
PFRMAT AL
TARGET T0127
AUTHOR 3359-3308-3659
REMARK FUGUE AUTOMATIC ALIGNMENT
REMARK ZSCORE=6.67 
REMARK CONFIDENCE: CERTAIN   (99% confidence [ ZSCORE>=6.0 ])
REMARK DERIVED FROM HOMSTRAD PROFILE: hsd1d2na
METHOD Environment-specific substitution tables were derived from the structure-based
METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted
METHOD into a scoring template (profile) using the environment-specific substitution 
METHOD tables and structure-dependent gap penalties. The program FUGUE searches
METHOD a sequence or sequence alignment against the library of profiles.
MODEL  3
PARENT 1d2n_A
A   6     E   505
R   7     D   506
L   8     Y   507
Q   9     A   508
P  10     S   509
S  11     Y   510
A  12     I   511
S  13     M   512
G  14     N   513
A  15     G   514
K  16     I   515
T  17     I   516
R  18     K   517
P  19     W   518
V  20     G   519
F  21     D   520
P  22     P   521
F  23     V   522
S  24     T   523
A  25     R   524
I  26     V   525
V  27     L   526
G  28     D   527
Q  29     D   528
E  30     G   529
D  31     E   530
M  32     L   531
K  33     L   532
L  34     V   533
A  35     Q   534
L  36     Q   535
L  37     T   536
L  38     K   537
T  39     N   538
A  40     S   539
V  41     D   540
D  42     R   541
P  43     T   542
G  44     P   543
I  45     L   544
G  46     V   545
G  47     S   546
V  48     V   547
L  49     L   548
V  50     L   549
F  51     E   550
G  52     G   551
D  53     P   552
R  54     P   553
G  55     H   554
T  56     S   555
G  57     G   556
K  58     K   557
S  59     T   558
T  60     A   559
A  61     L   560
V  62     A   561
R  63     A   562
A  64     K   563
L  65     I   564
A  66     A   565
A  67     E   566
L  68     E   567
L  69     S   568
N  98     N   569
V  99     F   570
I 100     P   571
R 101     F   572
K 102     I   573
P 103     K   574
T 104     I   575
P 105     C   576
S 114     S   577
E 115     P   578
D 116     D   579
R 117     K   580
V 118     M   581
V 119     I   582
G 120     G   583
A 121     F   584
L 122     S   585
D 123     E   586
I 124     T   587
E 125     A   588
R 126     K   589
A 127     C   590
I 128     Q   591
S 129     A   592
K 130     M   593
G 131     K   594
E 132     K   595
K 133     I   596
A 134     F   597
F 135     D   598
E 136     D   599
P 137     A   600
G 138     Y   601
R 142     K   602
A 143     S   603
N 144     Q   604
R 145     L   605
G 146     S   606
Y 147     C   607
L 148     V   608
Y 149     V   609
I 150     V   610
D 151     D   611
E 152     D   612
C 153     I   613
N 154     E   614
L 155     R   615
L 156     L   616
E 157     L   617
D 158     D   618
H 159     Y   619
I 160     V   620
V 161     P   621
D 162     I   622
L 163     G   623
L 164     P   624
L 165     R   625
D 166     F   626
V 167     S   627
A 168     N   628
Q 169     L   629
S 170     V   630
G 171     L   631
E 172     Q   632
N 173     A   633
V 174     L   634
V 175     L   635
E 176     V   636
R 177     L   637
D 178     L   638
G 179     K   639
L 180     K   640
S 181     A   641
I 182     P   642
R 183     P   643
H 184     Q   644
P 185     G   645
A 186     R   646
R 187     K   647
F 188     L   648
V 189     L   649
L 190     I   650
V 191     I   651
G 192     G   652
S 193     T   653
G 194     T   654
N 195     S   655
P 196     R   656
E 197     K   657
E 198     D   658
G 199     V   659
D 200     L   660
L 201     Q   661
R 202     E   662
P 203     M   663
Q 204     E   664
L 205     M   665
L 206     L   666
D 207     N   667
R 208     A   668
F 209     F   669
G 210     S   670
L 211     T   671
S 212     T   672
V 213     I   673
E 214     H   674
V 215     V   675
L 216     P   676
S 217     N   677
P 218     I   678
R 219     A   679
D 220     T   680
V 221     G   681
E 222     E   682
T 223     Q   683
R 224     L   684
V 225     L   685
E 226     E   686
V 227     A   687
I 228     L   688
R 229     E   689
R 230     L   690
R 231     L   691
D 232     G   692
T 233     N   693
Y 234     F   694
D 235     K   695
A 236     D   696
D 237     K   697
P 238     E   698
K 239     R   699
A 240     T   700
F 241     T   701
L 242     I   702
E 243     A   703
E 244     Q   704
W 245     Q   705
R 246     V   706
R 289     K   707
G 290     G   708
E 291     K   709
L 292     K   710
T 293     V   711
L 294     W   712
L 295     I   713
R 296     G   714
S 297     I   715
A 298     K   716
R 299     K   717
A 300     L   718
L 301     L   719
A 302     M   720
A 303     L   721
L 304     I   722
E 305     E   723
G 306     M   724
A 307     S   725
T 308     L   726
A 309     Q   727
V 310     M   728
G 311     D   729
R 312     P   730
D 313     E   731
H 314     Y   732
L 315     R   733
K 316     V   734
R 317     R   735
V 318     K   736
A 319     F   737
T 320     L   738
M 321     A   739
A 322     L   740
L 323     L   741
S 324     R   742
H 325     E   743
R 326     E   744
R 328     G   745
R 329     A   746
D 330     S   747
P 331     P   748
L 332     L   749
D 333     D   750
TER
END

