
PFRMAT AL
TARGET T0127
AUTHOR 4216-9015-4014
REMARK Predictor remarks
METHOD 
METHOD Work by Kelley LA, MacCallum RM & Sternberg MJE
METHOD Biomolecular Modelling Laboratory
METHOD Imperial Cancer Research Fund
METHOD 44 Lincoln's Inn Fields
METHOD London WC2A 3PX, England 
METHOD Tel +44-(0)20-7269-3565 / 3242
METHOD FAX +44-(0)20-7269-3534
METHOD
METHOD Using the results from the 3D-PSSM server:
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD We received a top ranking hit at high confidence (>95%)
METHOD to the P-loop 1doo chain E. The long excursion between residues 93
METHOD and 240 has not been equivalenced. In addition, what appears to
METHOD be an extra domain at the C-terminal end of the target could not be
METHOD satisfactorily aligned to any structure and hence we report
METHOD that region as a new fold.

MODEL 1
PARENT 1doo_E
M    1 P 6
T    2 R 7
T    3 E 8
A    4 I 9
V    5 V 10
A    6 S 11
R    7 E 12
L    8 L 13
Q    9 D 14
P   10 K 15
S   11 H 16
A   12 I 17
S   13 I 18
G   14 G 19
Q   29 Q 20
E   30 D 21
D   31 N 22
M   32 A 23
K   33 K 24
L   34 R 25
A   35 S 26
L   36 V 27
L   37 A 28
L   38 I 29
T   39 A 30
A   40 L 31
V   41 R 32
D   42 N 33
P   43 V 48
G   44 T 49
I   45 P 50
G   46 K 51
G   47 N 52
V   48 I 53
L   49 L 54
V   50 M 55
F   51 I 56
G   52 G 57
D   53 P 58
R   54 T 59
G   55 G 60
T   56 V 61
G   57 G 62
K   58 K 63
S   59 T 64
T   60 E 65
A   61 I 66
V   62 A 67
R   63 R 68
A   64 R 69
L   65 L 70
A   66 A 71
A   67 K 72
L   68 L 73
L   69 A 76
P   70 P 77
E   71 F 78
I   72 I 79
E   73 K 80
A   74 V 81
V   75 E 82
E   76 A 83
G   77 T 84
C   78 K 85
P   79 F 86
V   80 T 87
S   81 E 88
S   82 V 89
P   83 G 90
N   84 Y 91
V   85 V 92
E   86 G 93
F  135 K 240
E  136 Q 241
P  137 D 242
G  138 A 243
L  139 I 244
L  140 D 245
A  141 A 246
R  142 V 247
A  143 E 248
N  144 Q 249
R  145 H 250
G  146 G 251
Y  147 I 252
L  148 V 253
Y  149 F 254
I  150 I 255
D  151 D 256
E  152 E 257
C  153 I 258
N  154 D 259
L  155 K 260
L  156 I 261
E  157 R 274
D  158 E 275
H  159 G 276
I  160 V 277
V  161 Q 278
D  162 R 279
L  163 D 280
L  164 L 281
L  165 L 282
D  166 P 283
V  167 L 284
A  168 V 285
Q  169 E 286
E  172 G 287
N  173 C 288
V  174 T 289
V  175 V 290
E  176 S 291
R  177 T 292
D  178 K 293
G  179 H 294
L  180 G 295
S  181 M 296
I  182 V 297
R  183 K 298
H  184 T 299
P  185 D 300
R  187 H 301
F  188 I 302
V  189 L 303
L  190 F 304
V  191 I 305
G  192 A 306
S  193 S 307
G  194 G 308
N  195 A 309
P  196 F 310
E  197 K 314
E  198 P 315
G  199 S 316
D  200 D 317
L  201 L 318
R  202 I 319
P  203 P 320
Q  204 E 321
L  205 L 322
L  206 Q 323
D  207 G 324
R  208 R 325
F  209 L 326
G  210 P 327
L  211 I 328
S  212 R 329
V  213 V 330
E  214 E 331
V  215 L 332
L  216 Q 333
S  217 A 334
P  218 L 335
R  219 T 336
TER
PARENT NONE 220 350
TER
END


