
PFRMAT AL
TARGET T0127
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 3
PARENT 1a04_A
N  144 E 5
R  145 P 6
G  146 A 7
Y  147 T 8
L  148 I 9
Y  149 L 10
I  150 L 11
C  153 I 12
N  154 D 13
L  155 D 14
E  157 H 15
D  158 P 16
H  159 M 17
I  160 L 18
V  161 R 19
D  162 T 20
L  163 G 21
L  164 V 22
L  165 K 23
D  166 Q 24
V  167 L 25
A  168 I 26
Q  169 S 27
S  170 M 28
G  171 P 30
E  172 D 31
N  173 I 32
V  174 T 33
V  175 V 34
E  176 V 35
R  177 G 36
D  178 E 37
G  179 A 38
L  180 S 39
S  181 N 40
I  182 E 49
R  183 S 50
H  184 L 51
P  185 D 52
A  186 P 53
R  187 D 54
F  188 L 55
V  189 I 56
L  190 L 57
V  191 L 58
G  192 D 59
G  194 L 60
N  195 N 61
P  196 M 62
E  197 P 63
E  198 G 64
G  199 M 65
D  200 N 66
L  201 G 67
R  202 L 68
P  203 E 69
Q  204 T 70
L  205 L 71
L  206 L 74
D  207 R 75
R  208 E 76
F  209 K 77
G  210 S 78
L  211 L 79
S  212 R 82
V  213 I 83
E  214 V 84
V  215 V 85
L  216 F 86
S  217 S 87
P  218 V 88
R  219 N 90
D  220 H 91
V  221 E 92
E  222 E 93
T  223 D 94
R  224 V 95
V  225 V 96
E  226 T 97
V  227 A 98
I  228 L 99
R  229 K 100
R  230 R 101
R  231 Y 106
D  232 L 107
T  233 L 108
Y  234 K 109
D  235 D 110
A  236 M 111
D  237 E 112
P  238 P 113
K  239 E 114
A  240 Q 122
F  241 A 123
L  242 A 124
E  243 A 125
E  244 G 126
W  245 E 127
R  246 M 128
P  247 V 129
K  248 L 130
D  249 S 131
M  250 E 132
D  251 A 133
I  252 L 134
R  253 T 135
N  254 P 136
Q  255 V 137
I  256 L 138
L  257 A 139
E  258 A 140
A  259 S 141
R  260 L 142
E  261 E 150
R  262 R 151
L  263 D 152
P  264 V 153
K  265 N 154
V  266 Q 155
E  267 L 156
A  268 T 157
P  269 P 158
N  270 R 159
T  271 E 160
A  272 I 163
L  273 L 164
Y  274 K 165
D  275 L 166
C  276 I 167
A  277 A 168
A  278 Q 169
L  279 K 174
C  280 M 175
I  281 I 176
A  282 A 177
L  283 R 178
G  284 R 179
S  285 L 180
D  286 D 181
G  287 I 182
L  288 T 183
R  289 E 184
G  290 S 185
E  291 T 186
L  292 V 187
T  293 K 188
L  295 V 189
R  296 H 190
S  297 V 191
A  298 K 192
R  299 H 193
A  300 M 194
L  301 L 195
A  302 K 196
A  303 K 197
L  304 M 198
E  305 K 199
G  306 L 200
A  307 K 201
T  308 S 202
H  314 R 203
L  315 V 204
R  317 E 205
V  318 A 206
A  319 A 207
T  320 V 208
M  321 W 209
A  322 V 210
L  323 H 211
S  324 Q 212
H  325 E 213
R  326 R 214
L  327 I 215
R  328 F 216
TER
END

