
PFRMAT AL
TARGET T0127
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 4
PARENT 1a5t
F   23 M 1
S   24 R 2
A   25 W 3
I   26 Y 4
V   27 P 5
G   28 W 6
Q   29 L 7
E   30 R 8
D   31 P 9
M   32 D 10
K   33 F 11
L   34 E 12
A   35 K 13
L   36 L 14
L   37 V 15
L   38 A 16
T   39 S 17
A   40 Y 18
V   41 Q 19
D   42 A 20
P   43 G 21
G   44 R 22
I   45 G 23
G   46 H 24
G   47 A 26
V   48 L 27
L   49 L 28
V   50 I 29
F   51 Q 30
G   52 A 31
D   53 L 32
R   54 P 33
G   55 G 34
T   56 M 35
G   57 G 36
K   58 D 37
S   59 D 38
T   60 A 39
A   61 L 40
V   62 I 41
R   63 Y 42
A   64 A 43
L   65 L 44
A   66 S 45
A   67 R 46
L   68 L 49
L   69 C 50
P   70 Q 51
E   71 Q 52
I   72 P 53
E   73 Q 54
A   74 G 55
V   75 H 56
E   76 K 57
G   77 S 58
C   78 C 59
P   79 G 60
V   80 H 61
S   81 C 62
S   82 R 63
P   83 G 64
N   84 C 65
V   85 Q 66
E   86 L 67
M   87 M 68
I   88 Q 69
T   93 A 70
V   94 G 71
L   95 T 72
S   96 H 73
T   97 P 74
N   98 D 75
V   99 Y 76
I  100 Y 77
R  101 T 78
D  108 L 79
L  109 A 80
P  110 P 81
L  111 E 82
G  112 K 83
V  113 G 84
S  114 K 85
E  115 N 86
D  116 T 87
R  117 L 88
V  118 G 89
V  119 V 90
G  120 D 91
D  123 A 92
I  124 V 93
E  125 R 94
R  126 E 95
A  127 V 96
I  128 T 97
S  129 E 98
K  130 K 99
G  131 N 101
E  132 E 102
K  133 H 103
A  134 A 104
F  135 R 105
E  136 L 106
P  137 G 107
G  138 G 108
L  139 A 109
L  140 K 110
A  141 V 111
R  142 V 112
Y  149 W 113
I  150 V 114
D  151 T 115
E  152 D 116
C  153 A 117
N  154 A 118
L  155 L 119
L  156 L 120
E  157 T 121
D  158 D 122
H  159 A 123
I  160 A 124
V  161 A 125
D  162 N 126
L  163 A 127
L  164 L 128
L  165 L 129
D  166 K 130
D  178 T 131
G  179 L 132
L  180 E 133
S  181 E 134
H  184 P 135
P  185 P 136
A  186 A 137
R  187 E 138
F  188 T 139
V  189 W 140
L  190 F 141
V  191 F 142
G  192 L 143
S  193 A 144
G  194 T 145
N  195 R 146
P  196 E 147
E  197 P 148
E  198 E 149
D  200 R 150
L  201 L 151
R  202 L 152
P  203 A 153
Q  204 T 154
L  205 L 155
L  206 R 156
D  207 S 157
R  208 R 158
F  209 C 159
S  212 R 160
V  213 L 161
E  214 H 162
V  215 Y 163
L  216 L 164
S  217 A 165
P  218 P 166
TER
END

