
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  152 (  152),  selected  152 , name T0299TS677_1
# Molecule2: number of CA atoms  180 ( 1483),  selected  152 , name T0299.pdb
# PARAMETERS: T0299TS677_1.T0299.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    35       129 - 164         4.96    20.61
  LONGEST_CONTINUOUS_SEGMENT:    35       130 - 165         4.88    20.05
  LCS_AVERAGE:     16.66

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    17        52 - 68          1.84    23.09
  LCS_AVERAGE:      5.94

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    13        19 - 31          0.97    24.09
  LONGEST_CONTINUOUS_SEGMENT:    13        54 - 66          0.97    21.18
  LONGEST_CONTINUOUS_SEGMENT:    13        55 - 67          0.76    22.45
  LCS_AVERAGE:      4.17

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  180
LCS_GDT     L       6     L       6      5    7   14     4    5    6    6    6    8   10   17   19   22   24   28   31   34   35   35   37   38   43   47 
LCS_GDT     L       7     L       7      5    7   20     4    5    6    6    6    8   10   11   12   14   25   28   31   34   35   39   42   46   50   53 
LCS_GDT     V       8     V       8      5    7   22     4    5    6    6    6    8   10   14   15   18   27   28   32   37   44   52   53   59   67   72 
LCS_GDT     R       9     R       9      5    7   22     4    5    6    6    6    8   10   14   19   22   25   36   42   48   55   58   61   67   72   75 
LCS_GDT     G      10     G      10      5    7   22     4    5    7    8   10   14   22   25   28   29   30   35   42   48   55   58   61   67   72   75 
LCS_GDT     I      11     I      11      3    7   23     3    3    4   10   15   18   22   25   28   29   30   35   42   48   55   58   61   67   72   75 
LCS_GDT     N      12     N      12      3    7   23     3    3    3    5    6    8   10   11   18   21   24   27   37   43   50   58   60   67   72   75 
LCS_GDT     V      13     V      13      3    5   23     3    3    3    5    7    8   15   19   21   22   24   26   30   33   41   45   56   60   65   68 
LCS_GDT     G      14     G      14      3    5   23     3    3    3    5    7    8   10   12   15   18   23   25   26   29   31   36   39   43   46   48 
LCS_GDT     G      15     G      15      3    5   26     0    3    3    5    7    8   12   14   17   18   21   23   25   27   28   32   35   39   43   44 
LCS_GDT     K      16     K      16      3    5   27     3    3    3    4   10   14   17   20   21   24   26   26   30   34   38   38   40   43   46   48 
LCS_GDT     N      17     N      17      3    5   27     3    3    3    4    5   13   19   20   21   24   26   26   27   30   32   33   37   43   46   48 
LCS_GDT     K      18     K      18      3   15   27     3    3    3    4    8   14   18   20   21   24   26   27   37   43   48   53   60   63   67   72 
LCS_GDT     V      19     V      19     13   15   27     3    5   12   13   15   17   19   20   21   24   27   34   41   47   55   58   61   67   72   75 
LCS_GDT     V      20     V      20     13   15   27    10   11   12   13   15   17   19   20   21   24   27   34   41   47   55   58   61   67   72   75 
LCS_GDT     M      21     M      21     13   15   27    10   11   12   13   15   17   19   20   21   24   27   32   40   47   55   58   60   67   72   75 
LCS_GDT     A      22     A      22     13   15   27    10   11   12   13   15   17   19   20   21   24   27   32   40   47   55   58   61   67   72   75 
LCS_GDT     E      23     E      23     13   15   27    10   11   12   13   15   17   22   25   28   29   30   36   42   48   55   58   61   67   72   75 
LCS_GDT     L      24     L      24     13   15   27    10   11   12   13   15   17   19   20   24   28   30   36   42   48   55   58   61   67   72   75 
LCS_GDT     R      25     R      25     13   15   27    10   11   12   13   15   17   19   20   21   24   26   26   33   37   44   52   57   60   66   75 
LCS_GDT     Q      26     Q      26     13   15   27    10   11   12   13   15   17   19   20   21   24   26   26   35   39   45   52   54   59   63   75 
LCS_GDT     E      27     E      27     13   15   27    10   11   12   13   15   17   19   20   21   24   26   26   28   31   44   52   53   58   63   66 
LCS_GDT     L      28     L      28     13   15   27    10   11   12   13   15   16   19   20   21   24   26   26   28   32   38   45   52   53   55   66 
LCS_GDT     T      29     T      29     13   15   27    10   11   12   13   15   17   19   20   21   24   26   26   28   30   35   39   44   46   54   56 
LCS_GDT     N      30     N      30     13   15   27     3   11   12   13   15   17   19   20   21   24   26   26   28   30   32   33   34   37   39   56 
LCS_GDT     L      31     L      31     13   15   27     3    4   12   13   15   17   19   20   21   24   26   26   28   30   32   33   33   37   39   40 
LCS_GDT     G      32     G      32      7   15   27     3    4    8   13   15   17   19   20   21   24   26   26   28   30   32   33   33   36   38   40 
LCS_GDT     L      33     L      33      7   15   27     3    4    8   10   11   17   19   20   21   24   26   26   28   30   32   33   33   36   38   40 
LCS_GDT     E      34     E      34      7   11   27     3    4    8   10   11   12   16   19   21   22   24   26   28   30   32   33   33   36   38   40 
LCS_GDT     K      35     K      35      7   11   27     3    6    8   10   11   12   14   16   19   21   24   24   25   26   27   33   33   36   38   40 
LCS_GDT     V      36     V      36      7   11   27     3    6    8   10   11   12   14   16   19   21   24   24   25   31   33   40   44   48   53   58 
LCS_GDT     E      37     E      37      7   11   27     3    6    8   10   11   12   13   16   18   21   24   25   27   30   35   40   45   49   53   58 
LCS_GDT     S      38     S      38      7   11   27     3    6    8   10   11   12   14   16   19   21   24   28   36   43   50   54   60   66   69   75 
LCS_GDT     Y      39     Y      39      7   11   27     3    6    8   10   11   12   14   16   19   21   25   28   37   46   50   58   60   66   69   75 
LCS_GDT     I      40     I      40      7   11   27     3    6    8   10   10   12   14   16   18   21   24   27   29   33   40   52   56   60   65   68 
LCS_GDT     N      41     N      41      3    7   27     3    3    4    5    7    9   10   11   13   16   18   22   29   33   40   45   49   51   53   63 
LCS_GDT     S      42     S      42      3    5   27     3    3    4    5    6    7    9    9    9   10   13   14   18   26   29   37   39   42   44   45 
LCS_GDT     G      43     G      43      3    5   21     3    3    4    4    7    8   11   12   15   21   24   28   28   32   33   37   39   42   44   45 
LCS_GDT     N      44     N      44      3    5   22     3    3    4    7    9   10   11   15   18   22   24   28   28   32   33   37   39   49   57   64 
LCS_GDT     S      49     S      49      3    4   31     3    3    3    6   14   16   20   20   21   25   29   36   39   43   45   53   61   67   72   75 
LCS_GDT     I      50     I      50      3    4   31     3    3    3    4    5   11   15   19   21   23   26   29   34   42   45   52   61   67   72   75 
LCS_GDT     D      51     D      51      3    4   31     3    3    3    4    5    7   11   19   20   23   26   29   34   42   45   48   50   60   72   73 
LCS_GDT     S      52     S      52      3   17   31     3    3    3    4    5   16   17   19   21   27   30   36   40   43   45   52   61   65   72   73 
LCS_GDT     K      53     K      53      4   17   31     3    4    4   11   15   18   22   25   28   29   30   33   40   48   50   53   61   67   72   75 
LCS_GDT     A      54     A      54     13   17   31     4    4   11   14   15   18   22   25   28   29   30   36   40   48   50   53   61   67   72   75 
LCS_GDT     Q      55     Q      55     13   17   31     4    6   12   14   15   18   22   25   28   29   30   36   42   48   50   53   61   67   72   75 
LCS_GDT     L      56     L      56     13   17   31     4   11   12   14   15   18   22   25   28   29   30   36   42   48   50   54   61   67   72   75 
LCS_GDT     V      57     V      57     13   17   31     6   11   12   14   15   18   22   25   28   29   30   36   42   48   50   54   61   67   72   75 
LCS_GDT     E      58     E      58     13   17   31     8   11   12   14   15   18   22   25   28   29   30   36   42   48   50   53   61   67   72   75 
LCS_GDT     K      59     K      59     13   17   31     8   11   12   14   15   18   22   25   28   29   30   36   42   48   50   53   61   67   72   75 
LCS_GDT     L      60     L      60     13   17   31     8   11   12   14   15   18   22   25   28   29   30   36   42   48   55   58   61   67   72   75 
LCS_GDT     E      61     E      61     13   17   31     8   11   12   14   15   18   22   25   28   29   30   36   42   48   53   58   61   67   72   75 
LCS_GDT     T      62     T      62     13   17   31     8   11   12   14   15   18   22   25   28   29   30   36   42   48   50   54   61   67   72   75 
LCS_GDT     F      63     F      63     13   17   31     8   11   12   14   15   18   22   25   28   29   30   36   42   48   55   58   61   67   72   75 
LCS_GDT     F      64     F      64     13   17   31     8   11   12   14   15   18   22   25   28   29   30   36   42   48   55   58   61   67   72   75 
LCS_GDT     A      65     A      65     13   17   31     8   11   12   14   15   18   22   25   28   29   30   36   42   48   55   58   61   67   72   75 
LCS_GDT     V      66     V      66     13   17   31     8   11   12   14   15   18   22   25   28   29   30   36   42   48   55   58   61   67   72   75 
LCS_GDT     H      67     H      67     13   17   31     3   11   12   14   15   17   22   25   27   29   30   35   42   48   55   58   61   67   72   75 
LCS_GDT     Y      68     Y      68     12   17   31     4    4    8   14   15   17   20   20   21   23   30   36   42   48   55   58   61   67   72   75 
LCS_GDT     P      69     P      69      4   16   31     4    4    4    8   11   17   20   20   24   27   30   36   42   48   55   58   61   67   72   75 
LCS_GDT     F      70     F      70      4    9   31     4    4    6    7    8   11   15   19   24   27   30   36   42   48   55   58   61   67   72   75 
LCS_GDT     I      71     I      71      4    9   31     4    4    4    6    7    8    9   15   20   25   28   36   40   47   55   58   61   67   72   75 
LCS_GDT     Q      72     Q      72      6    9   31     4    5    7    8    8   14   15   17   19   23   28   36   42   48   55   58   61   67   72   75 
LCS_GDT     S      73     S      73      6    9   31     4    5    7    8   10   14   15   19   22   25   30   36   42   48   55   58   61   67   72   75 
LCS_GDT     F      74     F      74      6    9   31     4    5    7    8   14   15   16   19   24   27   30   36   42   48   55   58   61   67   72   75 
LCS_GDT     S      75     S      75      6    9   31     4    5    7    9   15   16   18   20   24   27   30   36   42   48   55   58   61   67   72   75 
LCS_GDT     L      76     L      76      6    9   31     4    5    6    8   10   14   15   19   24   27   30   36   42   48   55   58   61   67   72   75 
LCS_GDT     L      77     L      77      6    9   31     3    5    6    7    8   12   14   19   24   27   30   36   41   47   55   58   61   67   72   75 
LCS_GDT     L      79     L      79     10   11   31     8   10   12   14   15   17   20   21   24   26   26   34   37   44   48   55   60   63   67   72 
LCS_GDT     E      80     E      80     10   11   31     8   10   10   14   15   17   20   22   24   26   27   34   40   47   55   58   60   66   69   74 
LCS_GDT     D      81     D      81     10   11   30     8   10   10   10   11   13   20   22   24   26   27   34   41   47   55   58   60   66   70   75 
LCS_GDT     F      82     F      82     10   11   30     8   10   10   10   10   14   18   22   24   26   28   34   40   47   55   58   60   66   69   74 
LCS_GDT     E      83     E      83     10   11   30     8   10   10   10   10   14   18   22   24   26   28   30   36   43   48   52   60   63   67   70 
LCS_GDT     A      84     A      84     10   11   30     8   10   10   10   11   14   18   22   24   26   27   30   35   36   42   49   55   59   67   70 
LCS_GDT     E      85     E      85     10   11   30     8   10   10   10   11   14   18   22   24   26   26   28   34   36   42   45   49   54   60   68 
LCS_GDT     L      86     L      86     10   11   30     8   10   10   10   10   12   16   22   24   26   26   28   32   35   37   45   49   51   55   62 
LCS_GDT     E      87     E      87     10   11   30     7   10   10   10   10   12   13   15   20   26   26   28   29   30   32   37   42   50   54   62 
LCS_GDT     N      88     N      88     10   11   30     4   10   10   10   10   14   17   22   24   26   26   28   29   30   31   33   37   44   50   51 
LCS_GDT     A      91     A      91      4   11   30     3    4    4    6    6    6    6   11   11   17   25   28   29   30   31   32   34   34   37   40 
LCS_GDT     W      92     W      92      5    6   30     3    5    5    9    9   11   13   14   17   23   26   28   29   30   31   32   33   34   38   40 
LCS_GDT     W      93     W      93      5    6   30     3    5    5    6    6   11   16   22   24   26   26   28   29   30   31   32   34   34   38   40 
LCS_GDT     S      94     S      94      5    7   30     3    5    5    7   11   14   18   22   24   26   26   28   29   30   31   32   34   34   38   40 
LCS_GDT     R      95     R      95      5   11   30     3    5    5    6    7   10   15   19   24   26   26   28   29   30   31   32   34   34   38   40 
LCS_GDT     D      96     D      96      5   11   30     3    5    5    9   10   14   18   22   24   26   26   28   29   30   31   32   34   34   40   44 
LCS_GDT     L      97     L      97      4   11   30     3    5    6    9   10   14   18   22   24   26   26   28   29   34   37   37   38   42   44   45 
LCS_GDT     A      98     A      98      4   11   30     3    4    4    7   10   14   18   22   24   26   26   28   33   35   38   38   40   42   44   46 
LCS_GDT     R      99     R      99      7   11   30     4    6    8    9   11   17   19   22   24   26   26   28   33   35   38   38   40   42   44   46 
LCS_GDT     K     100     K     100      7   11   30     4    7    8    9   11   14   18   22   24   26   26   28   33   35   38   38   40   42   44   46 
LCS_GDT     D     101     D     101      7   11   30     4    7    8    9   11   15   19   22   24   26   26   28   33   35   38   38   40   45   51   54 
LCS_GDT     F     102     F     102      7   11   30     4    7    8    9   11   14   18   22   24   26   26   28   33   35   38   45   49   51   60   66 
LCS_GDT     L     103     L     103      7   11   30     4    7   13   13   13   17   19   22   24   26   30   31   40   47   55   58   60   67   72   75 
LCS_GDT     F     104     F     104      7   11   30     4    7    8    9   13   17   19   22   24   26   30   34   41   47   55   58   61   67   72   75 
LCS_GDT     Y     105     Y     105      7   11   30     4   10   13   13   13   17   19   25   28   29   30   35   42   48   55   58   61   67   72   75 
LCS_GDT     T     106     T     106      4   11   30     3    4    4    7   13   17   19   25   28   29   30   35   42   48   50   54   61   67   72   75 
LCS_GDT     E     107     E     107      4    7   30     3    4    4    7   10   17   19   22   24   26   26   28   33   35   38   38   40   42   49   56 
LCS_GDT     G     108     G     108      4    5   30     3    4    4    7   11   17   19   22   23   24   26   28   33   35   38   38   40   42   45   54 
LCS_GDT     L     109     L     109      4    4   30     3    4    4    4    4    8    8   17   20   23   26   27   28   30   37   38   40   41   45   54 
LCS_GDT     D     110     D     110      4    4   30     2    4    4    4    4    6    8    9   12   13   24   25   28   30   32   33   33   41   45   54 
LCS_GDT     V     111     V     111     11   13   28     4   11   13   13   13   17   19   20   28   29   30   36   42   48   55   58   61   67   72   75 
LCS_GDT     D     112     D     112     11   13   28     5   11   13   13   13   17   19   20   24   27   30   36   42   48   55   58   61   67   72   75 
LCS_GDT     Q     113     Q     113     11   13   28     4   11   13   13   13   17   19   20   21   24   28   33   35   39   45   52   56   64   70   75 
LCS_GDT     V     114     V     114     11   13   28     7   11   13   13   14   17   19   20   21   24   26   33   35   39   41   43   54   59   63   71 
LCS_GDT     I     115     I     115     11   13   28     7   11   13   13   13   17   19   20   21   24   30   32   34   42   45   50   56   61   67   72 
LCS_GDT     A     116     A     116     11   13   28     7   11   13   13   13   17   19   20   21   23   26   29   34   39   41   42   50   53   60   67 
LCS_GDT     T     117     T     117     11   13   28     7   11   13   13   13   17   19   20   21   23   25   28   33   35   38   38   40   45   51   54 
LCS_GDT     V     118     V     118     11   13   28     7   11   13   13   13   17   19   20   21   23   25   28   33   35   38   38   41   46   51   54 
LCS_GDT     E     119     E     119     11   13   28     7   11   13   13   13   17   19   20   21   23   25   28   33   35   38   38   42   46   51   54 
LCS_GDT     S     120     S     120     11   13   28     7   11   13   13   13   17   19   20   21   23   25   28   33   35   38   38   40   45   50   54 
LCS_GDT     L     121     L     121     11   13   28     7   11   13   13   13   17   19   20   21   23   25   28   33   35   38   38   40   42   44   47 
LCS_GDT     E     122     E     122      4   13   28     3    5    5    5   10   13   17   20   21   23   25   28   33   35   38   38   40   42   44   46 
LCS_GDT     L     123     L     123      4   13   28     3    4    4    4    7   13   19   20   21   23   25   28   33   35   38   38   40   42   44   50 
LCS_GDT     K     124     K     124      4    9   28     3    4    4    7    9   10   11   18   20   22   25   28   33   35   38   38   40   42   44   46 
LCS_GDT     D     125     D     125      8    9   28     4    7    8    8    9   10   10   13   17   22   25   28   33   35   38   38   40   42   44   46 
LCS_GDT     E     126     E     126      8    9   28     4    7    8    8    9   10   12   18   20   22   25   28   33   35   38   38   40   42   44   48 
LCS_GDT     V     127     V     127      8    9   26     4    7    8    8    9   10   11   15   18   22   25   28   33   35   38   38   40   42   44   50 
LCS_GDT     L     128     L     128      8    9   33     4    7    8    8    9   10   11   18   20   22   27   28   33   35   38   38   41   50   56   66 
LCS_GDT     Y     129     Y     129      8    9   35     3    7    8    8    9   17   20   21   24   26   27   31   33   38   43   50   60   63   67   72 
LCS_GDT     F     130     F     130      8    9   35     3    7    8    8   10   16   19   21   24   26   30   34   42   48   55   58   61   67   72   75 
LCS_GDT     G     131     G     131      8    9   35     3    7    8    8    9   13   16   20   24   27   30   36   42   48   55   58   61   67   72   75 
LCS_GDT     K     132     K     132      8    9   35     3    7    8    8    9   11   13   18   20   22   25   36   40   43   45   52   61   67   72   75 
LCS_GDT     G     134     G     134      8   10   35     4    6    8   11   14   17   20   21   24   26   29   36   39   46   50   53   60   63   68   72 
LCS_GDT     I     135     I     135      8   10   35     3    6    9   11   14   17   20   21   24   27   30   36   41   47   55   58   61   67   72   75 
LCS_GDT     F     136     F     136      8   10   35     4    6    9   11   14   17   20   21   24   27   30   36   40   46   55   58   60   66   72   75 
LCS_GDT     W     137     W     137      8   10   35     4    6    9   11   14   17   20   21   24   26   30   34   42   48   55   58   61   67   72   75 
LCS_GDT     G     138     G     138      8   10   35     4    6    9   11   14   17   20   21   24   26   28   34   38   46   55   58   61   67   72   75 
LCS_GDT     K     139     K     139      8   10   35     4    6    8   11   14   17   20   21   24   26   28   34   40   47   55   58   61   67   72   75 
LCS_GDT     F     140     F     140      8   10   35     3    6    9   11   14   17   20   21   24   26   28   31   35   37   42   43   51   57   60   68 
LCS_GDT     S     141     S     141      8   10   35     3    6    9   11   14   17   20   21   24   26   28   31   35   37   42   45   51   56   62   71 
LCS_GDT     E     142     E     142      4   10   35     3    4    4    5    9   17   20   21   24   26   28   34   40   47   55   58   60   66   70   75 
LCS_GDT     E     143     E     143      4   10   35     3    4    4    6   10   17   20   21   24   26   28   31   37   46   50   56   60   65   69   72 
LCS_GDT     S     144     S     144      4    9   35     3    4    6   10   14   17   20   21   24   26   28   34   40   47   55   58   60   66   70   75 
LCS_GDT     Y     145     Y     145      4    9   35     4    5    5   10   15   18   22   25   28   29   30   35   42   48   55   58   61   67   72   75 
LCS_GDT     S     146     S     146      4    9   35     4    5    6   11   15   18   22   25   28   29   30   35   42   48   55   58   61   67   72   75 
LCS_GDT     K     147     K     147      4    9   35     4    5    6   11   15   18   22   25   28   29   30   34   41   48   55   58   61   67   72   75 
LCS_GDT     T     148     T     148      6   10   35     5    6    8   11   14   18   22   25   28   29   30   35   42   48   55   58   61   67   72   75 
LCS_GDT     A     149     A     149      6   10   35     5    6    9   10   11   14   16   19   22   24   28   35   42   48   55   58   61   67   72   75 
LCS_GDT     Y     150     Y     150      6   10   35     5    6    8   10   11   11   12   14   21   24   26   35   42   48   55   58   61   67   72   75 
LCS_GDT     H     151     H     151      7   10   35     5    6    8   10   11   11   16   17   28   29   30   33   41   48   55   58   61   67   72   75 
LCS_GDT     K     152     K     152      7   10   35     5    6    8   10   15   18   22   25   28   29   30   35   42   48   55   58   61   67   72   75 
LCS_GDT     Y     153     Y     153      7   10   35     5    6    8   10   12   17   19   21   28   29   30   35   42   48   55   58   61   67   72   75 
LCS_GDT     L     154     L     154      7   10   35     5    5    8   11   14   17   20   21   24   26   28   31   35   39   45   52   59   67   72   75 
LCS_GDT     L     155     L     155      7   10   35     5    5    8   10   11   13   14   17   18   25   28   31   35   39   45   52   59   64   72   75 
LCS_GDT     K     156     K     156      7   10   35     5    5    8   10   11   11   14   20   28   29   30   35   42   48   55   58   61   67   72   75 
LCS_GDT     V     157     V     157      7   10   35     5    5    9   11   14   17   20   21   24   26   28   31   35   39   42   50   58   66   72   75 
LCS_GDT     P     158     P     158      4   10   35     3    4    4    8   14   17   20   21   24   26   28   31   35   37   42   45   49   57   63   74 
LCS_GDT     F     159     F     159      4    5   35     3    4    9   11   14   17   20   21   24   26   28   31   35   37   42   45   49   57   64   74 
LCS_GDT     Y     160     Y     160      4    5   35     3    4    6    8    9   13   18   21   23   26   28   31   35   39   44   52   58   67   72   75 
LCS_GDT     R     161     R     161      4    5   35     3    4    4    5    8   10   13   18   22   25   28   31   35   39   44   52   59   67   72   75 
LCS_GDT     H     162     H     162      4    5   35     4    5    5    5    5    6    7   11   15   20   23   28   33   39   47   52   60   67   72   75 
LCS_GDT     I     163     I     163      4    5   35     4    5    5    5    5    9   14   16   19   23   28   35   42   48   55   58   61   67   72   75 
LCS_GDT     T     164     T     164      4    5   35     4    5    5    5    5    6   10   14   17   22   25   35   42   48   55   58   61   67   72   75 
LCS_GDT     I     165     I     165      4    5   35     4    5    7    8   10   14   16   20   23   27   30   36   42   48   55   58   61   67   72   75 
LCS_AVERAGE  LCS_A:   8.92  (   4.17    5.94   16.66 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     10     11     13     14     15     18     22     25     28     29     30     36     42     48     55     58     61     67     72     75 
GDT PERCENT_CA   5.56   6.11   7.22   7.78   8.33  10.00  12.22  13.89  15.56  16.11  16.67  20.00  23.33  26.67  30.56  32.22  33.89  37.22  40.00  41.67
GDT RMS_LOCAL    0.26   0.43   0.77   1.01   1.34   2.11   2.47   2.82   3.27   3.32   3.39   4.25   5.01   6.93   5.77   5.92   6.02   6.40   7.61   6.89
GDT RMS_ALL_CA  27.28  23.21  23.96  21.77  25.65  18.55  18.63  18.50  18.10  18.12  18.30  17.08  17.11  17.11  16.28  16.29  17.02  16.95  16.95  16.79

#      Molecule1      Molecule2       DISTANCE
LGA    L       6      L       6         26.109
LGA    L       7      L       7         20.283
LGA    V       8      V       8         13.291
LGA    R       9      R       9          8.363
LGA    G      10      G      10          3.070
LGA    I      11      I      11          1.973
LGA    N      12      N      12          8.531
LGA    V      13      V      13         13.380
LGA    G      14      G      14         19.537
LGA    G      15      G      15         23.722
LGA    K      16      K      16         20.739
LGA    N      17      N      17         17.554
LGA    K      18      K      18         12.089
LGA    V      19      V      19          7.913
LGA    V      20      V      20          9.279
LGA    M      21      M      21         10.968
LGA    A      22      A      22          8.804
LGA    E      23      E      23          3.622
LGA    L      24      L      24          6.436
LGA    R      25      R      25         12.700
LGA    Q      26      Q      26         12.213
LGA    E      27      E      27         13.197
LGA    L      28      L      28         17.189
LGA    T      29      T      29         21.597
LGA    N      30      N      30         21.881
LGA    L      31      L      31         23.773
LGA    G      32      G      32         27.507
LGA    L      33      L      33         24.134
LGA    E      34      E      34         27.525
LGA    K      35      K      35         25.403
LGA    V      36      V      36         18.051
LGA    E      37      E      37         16.664
LGA    S      38      S      38         13.415
LGA    Y      39      Y      39         13.578
LGA    I      40      I      40         17.812
LGA    N      41      N      41         18.531
LGA    S      42      S      42         19.943
LGA    G      43      G      43         18.402
LGA    N      44      N      44         14.481
LGA    S      49      S      49          9.442
LGA    I      50      I      50         10.591
LGA    D      51      D      51         10.424
LGA    S      52      S      52          6.515
LGA    K      53      K      53          3.725
LGA    A      54      A      54          3.382
LGA    Q      55      Q      55          3.379
LGA    L      56      L      56          1.562
LGA    V      57      V      57          2.066
LGA    E      58      E      58          3.865
LGA    K      59      K      59          3.241
LGA    L      60      L      60          1.618
LGA    E      61      E      61          2.839
LGA    T      62      T      62          3.544
LGA    F      63      F      63          2.682
LGA    F      64      F      64          2.805
LGA    A      65      A      65          3.025
LGA    V      66      V      66          2.272
LGA    H      67      H      67          3.961
LGA    Y      68      Y      68          6.742
LGA    P      69      P      69          6.979
LGA    F      70      F      70          8.494
LGA    I      71      I      71         10.476
LGA    Q      72      Q      72          8.788
LGA    S      73      S      73          9.192
LGA    F      74      F      74          8.428
LGA    S      75      S      75          9.213
LGA    L      76      L      76          9.521
LGA    L      77      L      77         10.279
LGA    L      79      L      79         19.960
LGA    E      80      E      80         19.602
LGA    D      81      D      81         15.127
LGA    F      82      F      82         18.145
LGA    E      83      E      83         24.516
LGA    A      84      A      84         23.504
LGA    E      85      E      85         22.335
LGA    L      86      L      86         27.225
LGA    E      87      E      87         31.770
LGA    N      88      N      88         31.971
LGA    A      91      A      91         39.066
LGA    W      92      W      92         42.117
LGA    W      93      W      93         39.547
LGA    S      94      S      94         40.976
LGA    R      95      R      95         43.477
LGA    D      96      D      96         46.584
LGA    L      97      L      97         42.343
LGA    A      98      A      98         38.669
LGA    R      99      R      99         32.638
LGA    K     100      K     100         29.373
LGA    D     101      D     101         22.512
LGA    F     102      F     102         19.019
LGA    L     103      L     103         11.708
LGA    F     104      F     104         10.572
LGA    Y     105      Y     105          3.967
LGA    T     106      T     106          3.751
LGA    E     107      E     107         10.536
LGA    G     108      G     108         12.680
LGA    L     109      L     109         13.451
LGA    D     110      D     110         15.905
LGA    V     111      V     111          6.237
LGA    D     112      D     112          8.279
LGA    Q     113      Q     113          9.120
LGA    V     114      V     114         11.723
LGA    I     115      I     115         14.768
LGA    A     116      A     116         17.301
LGA    T     117      T     117         19.985
LGA    V     118      V     118         22.093
LGA    E     119      E     119         24.855
LGA    S     120      S     120         27.948
LGA    L     121      L     121         31.319
LGA    E     122      E     122         32.948
LGA    L     123      L     123         33.298
LGA    K     124      K     124         34.541
LGA    D     125      D     125         34.774
LGA    E     126      E     126         28.812
LGA    V     127      V     127         25.763
LGA    L     128      L     128         19.229
LGA    Y     129      Y     129         16.357
LGA    F     130      F     130         10.281
LGA    G     131      G     131         10.995
LGA    K     132      K     132         10.906
LGA    G     134      G     134         16.397
LGA    I     135      I     135         13.004
LGA    F     136      F     136         13.124
LGA    W     137      W     137         10.075
LGA    G     138      G     138         10.743
LGA    K     139      K     139          9.342
LGA    F     140      F     140         12.253
LGA    S     141      S     141         12.024
LGA    E     142      E     142          9.564
LGA    E     143      E     143         11.947
LGA    S     144      S     144          9.635
LGA    Y     145      Y     145          2.780
LGA    S     146      S     146          1.674
LGA    K     147      K     147          3.170
LGA    T     148      T     148          3.228
LGA    A     149      A     149          5.885
LGA    Y     150      Y     150          6.849
LGA    H     151      H     151          5.320
LGA    K     152      K     152          2.693
LGA    Y     153      Y     153          4.335
LGA    L     154      L     154          8.774
LGA    L     155      L     155          7.651
LGA    K     156      K     156          4.101
LGA    V     157      V     157         10.614
LGA    P     158      P     158         11.584
LGA    F     159      F     159         13.388
LGA    Y     160      Y     160         10.069
LGA    R     161      R     161          9.634
LGA    H     162      H     162          9.501
LGA    I     163      I     163          7.876
LGA    T     164      T     164          7.637
LGA    I     165      I     165          6.144

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  152  180    4.0     25    2.82    15.000    12.060     0.856

LGA_LOCAL      RMSD =  2.822  Number of atoms =   25  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 18.150  Number of atoms =  152 
Std_ALL_ATOMS  RMSD = 15.462  (standard rmsd on all 152 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.729456 * X  +   0.197966 * Y  +  -0.654755 * Z  +  48.259766
  Y_new =   0.365177 * X  +   0.696679 * Y  +   0.617482 * Z  +  57.679832
  Z_new =   0.578394 * X  +  -0.689527 * Y  +   0.435904 * Z  +   9.061926 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -1.007052    2.134541  [ DEG:   -57.6998    122.3002 ]
  Theta =  -0.616759   -2.524834  [ DEG:   -35.3377   -144.6623 ]
  Phi   =   0.464140   -2.677453  [ DEG:    26.5933   -153.4067 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0299TS677_1                                  
REMARK     2: T0299.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0299TS677_1.T0299.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  152  180   4.0   25   2.82  12.060    15.46
REMARK  ---------------------------------------------------------- 
MOLECULE T0299TS677_1
PFRMAT     TS
TARGET     T0299
MODEL      1
PARENT     1lf1A
ATOM     27  CA  LEU     6      14.882  34.144   7.695  1.00 99.00
ATOM     28  CA  LEU     7      13.686  35.602   4.356  1.00 99.00
ATOM     29  CA  VAL     8       9.931  36.016   3.676  1.00 99.00
ATOM     30  CA  ARG     9       8.600  36.210   0.091  1.00 99.00
ATOM     31  CA  GLY    10       5.019  36.757  -1.067  1.00 84.00
ATOM     32  CA  ILE    11       2.301  38.933  -2.541  1.00 69.00
ATOM     33  CA  ASN    12       0.489  42.185  -1.779  1.00 51.00
ATOM     34  CA  VAL    13      -3.206  42.739  -2.346  1.00 51.00
ATOM     35  CA  GLY    14      -4.130  45.833  -4.329  1.00 75.00
ATOM     36  CA  GLY    15      -6.436  48.399  -2.556  1.00 77.00
ATOM     41  CA  LYS    16     -10.837  42.732  -2.065  1.00 92.00
ATOM     42  CA  ASN    17     -12.437  39.798  -3.880  1.00 94.00
ATOM     43  CA  LYS    18      -9.006  38.309  -4.559  1.00 99.00
ATOM     44  CA  VAL    19      -8.302  38.143  -0.843  1.00 99.00
ATOM     45  CA  VAL    20      -9.847  35.189   0.932  1.00 99.00
ATOM     46  CA  MET    21      -9.009  31.900   2.617  1.00 99.00
ATOM     47  CA  ALA    22      -9.017  29.860  -0.617  1.00 99.00
ATOM     48  CA  GLU    23      -6.887  32.266  -2.663  1.00 84.00
ATOM     49  CA  LEU    24      -4.331  32.627   0.151  1.00 61.00
ATOM     50  CA  ARG    25      -4.247  28.879   0.561  1.00 99.00
ATOM     51  CA  GLN    26      -3.709  28.512  -3.180  1.00 94.00
ATOM     52  CA  GLU    27      -0.849  31.028  -2.957  1.00 99.00
ATOM     53  CA  LEU    28       0.629  29.115  -0.012  1.00 99.00
ATOM     54  CA  THR    29       0.446  25.658  -1.662  1.00 99.00
ATOM     55  CA  ASN    30       0.982  26.464  -5.354  1.00 76.00
ATOM     56  CA  LEU    31       3.317  29.467  -5.264  1.00 76.00
ATOM     57  CA  GLY    32       4.968  28.848  -1.868  1.00 72.00
ATOM     58  CA  LEU    33       4.360  32.314  -0.428  1.00 78.00
ATOM     59  CA  GLU    34       5.413  32.800   3.203  1.00 42.00
ATOM     60  CA  LYS    35       3.928  36.298   3.710  1.00 87.00
ATOM     61  CA  VAL    36       0.717  38.048   2.608  1.00 90.00
ATOM     62  CA  GLU    37       0.307  41.828   2.620  1.00 71.00
ATOM     63  CA  SER    38      -3.111  43.427   3.247  1.00 54.00
ATOM     64  CA  TYR    39      -3.130  46.858   1.582  1.00 57.00
ATOM     65  CA  ILE    40      -5.799  48.904   3.313  1.00 31.00
ATOM     66  CA  ASN    41      -5.959  52.379   1.715  1.00 21.00
ATOM     67  CA  SER    42      -6.848  55.273   4.066  1.00 38.00
ATOM     68  CA  GLY    43      -8.095  57.655   1.407  1.00 44.00
ATOM     69  CA  ASN    44      -9.266  57.124  -2.190  1.00 36.00
ATOM     71  CA  SER    49     -10.415  53.553   1.823  1.00 29.00
ATOM     72  CA  ILE    50     -10.798  53.298   5.587  1.00 44.00
ATOM     73  CA  ASP    51     -11.285  57.010   6.308  1.00 43.00
ATOM     74  CA  SER    52     -13.993  57.167   3.642  1.00 52.00
ATOM     75  CA  LYS    53     -15.567  53.832   4.587  1.00 66.00
ATOM     76  CA  ALA    54     -14.349  52.030   7.675  1.00 70.00
ATOM     77  CA  GLN    55     -16.195  48.820   6.760  1.00 79.00
ATOM     78  CA  LEU    56     -12.956  47.768   5.039  1.00 83.00
ATOM     79  CA  VAL    57     -11.541  47.084   8.549  1.00 76.00
ATOM     80  CA  GLU    58     -13.547  43.898   8.592  1.00 66.00
ATOM     81  CA  LYS    59     -11.786  42.627   5.439  1.00 66.00
ATOM     82  CA  LEU    60      -8.419  43.185   7.161  1.00 62.00
ATOM     83  CA  GLU    61      -9.648  41.002  10.035  1.00 40.00
ATOM     84  CA  THR    62     -10.795  38.276   7.625  1.00 35.00
ATOM     85  CA  PHE    63      -7.358  38.277   6.032  1.00 48.00
ATOM     86  CA  PHE    64      -5.376  38.066   9.293  1.00 33.00
ATOM     87  CA  ALA    65      -7.606  35.267  10.565  1.00 47.00
ATOM     88  CA  VAL    66      -7.031  33.360   7.351  1.00 99.00
ATOM     89  CA  HIS    67      -3.294  33.791   7.701  1.00 99.00
ATOM     90  CA  TYR    68      -3.426  32.500  11.266  1.00 87.00
ATOM     91  CA  PRO    69      -5.374  29.488  10.002  1.00 99.00
ATOM     92  CA  PHE    70      -2.975  28.833   7.113  1.00 99.00
ATOM     93  CA  ILE    71       0.195  29.322   9.117  1.00 80.00
ATOM     94  CA  GLN    72       1.708  32.230   7.219  1.00 72.00
ATOM     95  CA  SER    73       2.919  35.732   8.161  1.00 81.00
ATOM     96  CA  PHE    74       0.597  38.670   7.325  1.00 41.00
ATOM     97  CA  SER    75       1.303  42.378   6.945  1.00 37.00
ATOM     98  CA  LEU    76      -1.351  44.862   8.064  1.00 19.00
ATOM     99  CA  LEU    77      -0.631  47.882   5.870  1.00 34.00
ATOM    112  CA  LEU    79      -2.578  59.888  12.747  1.00 36.00
ATOM    113  CA  GLU    80      -5.311  59.895  15.348  1.00 29.00
ATOM    114  CA  ASP    81      -7.271  57.443  13.253  1.00 29.00
ATOM    115  CA  PHE    82      -4.063  55.411  12.697  1.00 48.00
ATOM    116  CA  GLU    83      -3.619  55.183  16.440  1.00 76.00
ATOM    117  CA  ALA    84      -7.146  53.922  17.061  1.00 65.00
ATOM    118  CA  GLU    85      -6.874  51.385  14.227  1.00 87.00
ATOM    119  CA  LEU    86      -3.516  49.928  15.383  1.00 83.00
ATOM    120  CA  GLU    87      -4.705  49.874  19.025  1.00 76.00
ATOM    121  CA  ASN    88      -7.622  47.702  17.871  1.00 31.00
ATOM    123  CA  ALA    91      -2.725  44.851  18.218  1.00 30.00
ATOM    124  CA  TRP    92      -5.288  44.140  20.922  1.00 23.00
ATOM    125  CA  TRP    93      -7.008  41.513  18.763  1.00 19.00
ATOM    126  CA  SER    94      -3.949  39.766  17.320  1.00 25.00
ATOM    127  CA  ARG    95      -0.874  40.875  19.273  1.00 54.00
ATOM    128  CA  ASP    96      -0.517  37.480  20.952  1.00 73.00
ATOM    129  CA  LEU    97       0.067  35.732  17.612  1.00 71.00
ATOM    130  CA  ALA    98       3.505  35.699  15.902  1.00 99.00
ATOM    131  CA  ARG    99       1.909  35.974  12.431  1.00 99.00
ATOM    132  CA  LYS   100       1.316  39.743  12.507  1.00 98.00
ATOM    133  CA  ASP   101       3.610  42.443  11.060  1.00 79.00
ATOM    134  CA  PHE   102       2.442  46.071  11.215  1.00 66.00
ATOM    135  CA  LEU   103       3.174  48.494   8.331  1.00  0.00
ATOM    136  CA  PHE   104       2.166  51.817   9.789  1.00  0.00
ATOM    137  CA  TYR   105       2.610  54.200   6.834  1.00  9.00
ATOM    138  CA  THR   106       2.928  52.734   3.308  1.00  8.00
ATOM    139  CA  GLU   107       4.506  55.541   1.231  1.00 59.00
ATOM    140  CA  GLY   108       5.212  58.949   2.688  1.00 80.00
ATOM    141  CA  LEU   109       5.909  61.336  -0.200  1.00 99.00
ATOM    142  CA  ASP   110       6.393  65.009  -1.072  1.00 99.00
ATOM    155  CA  VAL   111       6.337  56.600  14.283  1.00 99.00
ATOM    156  CA  ASP   112       7.173  57.625  17.832  1.00 86.00
ATOM    157  CA  GLN   113       3.465  58.258  18.396  1.00 96.00
ATOM    158  CA  VAL   114       2.054  55.089  16.794  1.00 86.00
ATOM    159  CA  ILE   115       4.608  52.494  17.962  1.00 79.00
ATOM    160  CA  ALA   116       3.889  52.985  21.717  1.00 59.00
ATOM    161  CA  THR   117       0.160  52.402  21.205  1.00 84.00
ATOM    162  CA  VAL   118       0.996  49.066  19.541  1.00 71.00
ATOM    163  CA  GLU   119       3.595  48.251  22.100  1.00 68.00
ATOM    164  CA  SER   120       1.151  48.494  25.013  1.00 99.00
ATOM    165  CA  LEU   121      -0.665  45.482  23.446  1.00 99.00
ATOM    166  CA  GLU   122       2.049  43.740  21.468  1.00 99.00
ATOM    167  CA  LEU   123       5.568  44.167  22.824  1.00 99.00
ATOM    168  CA  LYS   124       7.533  42.248  20.198  1.00 99.00
ATOM    169  CA  ASP   125       5.986  41.865  16.746  1.00 90.00
ATOM    170  CA  GLU   126       7.754  43.623  13.893  1.00 61.00
ATOM    171  CA  VAL   127       6.798  47.114  12.818  1.00 36.00
ATOM    172  CA  LEU   128       7.617  48.284   9.275  1.00 22.00
ATOM    173  CA  TYR   129       7.954  52.095   8.977  1.00  6.00
ATOM    174  CA  PHE   130       7.687  53.895   5.602  1.00 10.00
ATOM    175  CA  GLY   131      10.390  56.230   4.398  1.00  3.00
ATOM    176  CA  LYS   132      10.569  59.358   2.294  1.00 10.00
ATOM    196  CA  GLY   134      12.305  47.718   9.941  1.00 10.00
ATOM    197  CA  ILE   135      12.380  50.455   7.302  1.00  9.00
ATOM    198  CA  PHE   136      10.444  50.063   4.064  1.00  0.00
ATOM    199  CA  TRP   137      12.116  50.100   0.666  1.00 17.00
ATOM    200  CA  GLY   138       9.947  50.092  -2.497  1.00 66.00
ATOM    201  CA  LYS   139      11.064  49.971  -6.127  1.00 80.00
ATOM    202  CA  PHE   140       9.944  49.438  -9.705  1.00 99.00
ATOM    203  CA  SER   141      12.211  47.207 -11.787  1.00 99.00
ATOM    204  CA  GLU   142      11.533  49.132 -14.979  1.00 99.00
ATOM    205  CA  GLU   143      12.495  52.479 -13.328  1.00 88.00
ATOM    206  CA  SER   144      14.896  52.036 -10.398  1.00 88.00
ATOM    207  CA  TYR   145      18.626  51.571 -10.700  1.00 91.00
ATOM    208  CA  SER   146      22.029  51.294  -9.041  1.00 90.00
ATOM    209  CA  LYS   147      21.796  54.497  -7.012  1.00 99.00
ATOM    210  CA  THR   148      18.880  52.899  -5.096  1.00 99.00
ATOM    211  CA  ALA   149      20.849  49.692  -4.514  1.00 99.00
ATOM    212  CA  TYR   150      23.776  51.759  -3.230  1.00 99.00
ATOM    213  CA  HIS   151      21.358  53.555  -0.874  1.00 99.00
ATOM    214  CA  LYS   152      20.005  50.255   0.403  1.00 99.00
ATOM    215  CA  TYR   153      23.535  48.988   1.032  1.00 99.00
ATOM    216  CA  LEU   154      24.382  52.114   2.935  1.00 99.00
ATOM    217  CA  LEU   155      21.387  51.722   5.279  1.00 99.00
ATOM    218  CA  LYS   156      22.273  48.087   5.886  1.00 91.00
ATOM    219  CA  VAL   157      25.847  49.154   6.685  1.00 99.00
ATOM    220  CA  PRO   158      24.367  51.476   9.305  1.00 99.00
ATOM    221  CA  PHE   159      22.707  48.494  10.989  1.00 99.00
ATOM    222  CA  TYR   160      19.197  49.299   9.756  1.00 99.00
ATOM    223  CA  ARG   161      16.859  46.399   8.894  1.00 99.00
ATOM    224  CA  HIS   162      14.985  46.789   5.637  1.00 99.00
ATOM    225  CA  ILE   163      11.772  45.092   4.374  1.00 85.00
ATOM    226  CA  THR   164      10.949  45.429   0.721  1.00 85.00
ATOM    227  CA  ILE   165       7.189  45.514   1.423  1.00 85.00
TER
END
