
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  129 (  129),  selected  129 , name T0302TS393_5-D1
# Molecule2: number of CA atoms  129 ( 2108),  selected  129 , name T0302_D1.pdb
# PARAMETERS: T0302TS393_5-D1.T0302_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   129         3 - 131         3.52     3.52
  LCS_AVERAGE:    100.00

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    52        19 - 70          1.90     3.81
  LONGEST_CONTINUOUS_SEGMENT:    52        20 - 71          1.98     3.73
  LCS_AVERAGE:     29.55

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    26        26 - 51          0.95     4.84
  LCS_AVERAGE:     11.17

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  129
LCS_GDT     V       3     V       3      4   13  129     3    4   14   29   50   75   94  103  109  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     S       4     S       4      4   13  129     3    8   18   29   50   88  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     P       5     P       5     11   13  129     7   10   34   55   75   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     E       6     E       6     11   13  129     7   17   30   55   75   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     E       7     E       7     11   13  129     7   10   10   13   72   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     A       8     A       8     11   13  129     7   10   21   44   71   90  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     V       9     V       9     11   13  129     7   15   41   68   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     K      10     K      10     11   13  129    12   26   41   68   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     W      11     W      11     11   13  129     7   10   15   21   35   63   87   98  105  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     G      12     G      12     11   13  129     4   10   10   20   26   50   63   85   98  106  109  119  121  123  125  127  129  129  129  129 
LCS_GDT     E      13     E      13     11   13  129     4   10   10   14   26   56   74   94  101  108  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     S      14     S      14     11   13  129     6   10   30   41   56   68   87   97  103  110  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     F      15     F      15     11   13  129     6    6   10   14   17   25   32   39   96  102  107  115  121  123  125  127  129  129  129  129 
LCS_GDT     D      16     D      16      6    7  129     6   15   17   34   53   79   90  101  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     K      17     K      17      6    7  129     6    6    6    7   40   67   99  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     L      18     L      18      6   37  129     6    6    6    8    8    9   17   57   88  102  112  118  121  123  125  127  129  129  129  129 
LCS_GDT     L      19     L      19      6   52  129     6   10   19   38   54   79   95  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     S      20     S      20      4   52  129     3    4   30   46   65   85   93  101  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     H      21     H      21     15   52  129     7   23   38   60   81   89   95  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     R      22     R      22     17   52  129     9   14   37   68   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     D      23     D      23     18   52  129     9   16   40   68   82   90  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     G      24     G      24     18   52  129     9   15   37   60   82   90  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     L      25     L      25     18   52  129     9   15   37   68   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     E      26     E      26     26   52  129     9   23   41   68   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     A      27     A      27     26   52  129     9   22   40   68   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     F      28     F      28     26   52  129     9   23   41   68   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     T      29     T      29     26   52  129     8   23   41   68   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     R      30     R      30     26   52  129     9   22   41   68   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     F      31     F      31     26   52  129     9   22   41   68   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     L      32     L      32     26   52  129     9   23   41   68   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     K      33     K      33     26   52  129     9   23   41   68   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     T      34     T      34     26   52  129     9   23   41   68   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     E      35     E      35     26   52  129     9   23   40   68   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     F      36     F      36     26   52  129     4   22   40   60   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     S      37     S      37     26   52  129     4   23   40   68   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     E      38     E      38     26   52  129     4   21   39   65   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     E      39     E      39     26   52  129     4    7   19   38   66   89   99  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     N      40     N      40     26   52  129     5   21   39   68   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     I      41     I      41     26   52  129     7   23   41   68   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     E      42     E      42     26   52  129     4   19   38   57   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     F      43     F      43     26   52  129     9   21   39   68   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     W      44     W      44     26   52  129     8   21   40   68   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     I      45     I      45     26   52  129     8   23   40   68   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     A      46     A      46     26   52  129     9   21   39   65   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     C      47     C      47     26   52  129     8   21   41   68   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     E      48     E      48     26   52  129     8   21   41   68   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     D      49     D      49     26   52  129     9   22   39   64   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     F      50     F      50     26   52  129     8   21   34   62   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     K      51     K      51     26   52  129     8   21   41   68   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     K      52     K      52      4   52  129     8   16   33   56   79   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     S      53     S      53      4   52  129     9   19   39   68   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     K      54     K      54      4   52  129     3   20   41   68   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     G      55     G      55     16   52  129     3   13   29   53   72   90  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     P      56     P      56     16   52  129    12   26   41   68   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     Q      57     Q      57     16   52  129    10   26   41   68   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     Q      58     Q      58     16   52  129    12   26   41   68   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     I      59     I      59     16   52  129     6   21   41   68   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     H      60     H      60     16   52  129     6   20   37   67   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     L      61     L      61     16   52  129    10   26   41   68   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     K      62     K      62     16   52  129    12   26   41   68   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     A      63     A      63     16   52  129    12   26   41   68   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     K      64     K      64     16   52  129    12   26   41   68   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     A      65     A      65     16   52  129    12   26   41   68   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     I      66     I      66     16   52  129    12   26   41   68   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     Y      67     Y      67     16   52  129    12   26   41   68   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     E      68     E      68     16   52  129    10   26   41   68   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     K      69     K      69     16   52  129    12   26   41   68   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     F      70     F      70     16   52  129     9   20   41   68   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     I      71     I      71      6   52  129     3    4    9   18   32   65   90  104  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     Q      72     Q      72      6   48  129     3    3    9   22   46   62   84  101  109  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     T      73     T      73      6   34  129     3    4   11   18   28   40   65   91  103  109  113  118  121  122  125  127  129  129  129  129 
LCS_GDT     D      74     D      74      3   20  129     1    4   16   22   34   45   55   98  105  111  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     A      75     A      75      3    6  129     3    4   10   23   36   60   78   92  108  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     P      76     P      76      3   16  129     3    3    3   12   34   65   77   93  107  112  115  118  121  123  125  127  129  129  129  129 
LCS_GDT     K      77     K      77      3   16  129     3    4    4    5   15   17   24   33   43   49   73   91  118  122  124  127  129  129  129  129 
LCS_GDT     E      78     E      78      3   16  129     0    3    4    4   10   12   16   33   43   55   73   80   96  122  123  126  129  129  129  129 
LCS_GDT     V      79     V      79      4   16  129     1    5   10   14   16   18   24   33   59   68  105  116  120  123  125  127  129  129  129  129 
LCS_GDT     N      80     N      80      5   16  129     3    5   10   14   16   21   38   50   64   71  101  116  118  123  125  127  129  129  129  129 
LCS_GDT     L      81     L      81      5   16  129     3    5   10   14   16   20   25   45   59   68  101  116  120  123  125  127  129  129  129  129 
LCS_GDT     D      82     D      82     11   17  129     3    4   10   14   16   24   40   50   64   75   91  113  118  121  125  127  129  129  129  129 
LCS_GDT     F      83     F      83     12   32  129    10   15   26   44   60   83   98  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     H      84     H      84     12   34  129    10   15   26   41   60   82   98  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     T      85     T      85     12   36  129    10   11   25   46   71   91   99  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     K      86     K      86     12   36  129    10   12   32   59   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     E      87     E      87     12   36  129    10   16   30   52   78   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     V      88     V      88     12   36  129    10   17   36   65   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     I      89     I      89     12   36  129    10   23   40   68   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     T      90     T      90     12   36  129    10   16   39   68   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     N      91     N      91     12   36  129    10   16   40   68   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     S      92     S      92     12   36  129    10   12   25   68   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     I      93     I      93     12   36  129     3   12   41   68   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     T      94     T      94     12   36  129     4   13   41   68   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     Q      95     Q      95      5   36  129     5   26   41   68   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     P      96     P      96      5   36  129     4    8   23   53   81   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     T      97     T      97      5   36  129     6   18   39   68   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     L      98     L      98      4   36  129     4   13   24   39   64   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     H      99     H      99      4   36  129     4    4    5   10   24   33   59   92  104  111  114  119  121  123  125  127  129  129  129  129 
LCS_GDT     S     100     S     100     15   36  129     4    7   11   33   56   87  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     F     101     F     101     17   36  129     4   26   41   68   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     D     102     D     102     17   36  129     6   26   41   68   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     A     103     A     103     17   36  129    12   26   41   68   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     A     104     A     104     17   36  129    11   26   41   68   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     Q     105     Q     105     17   36  129     9   23   41   68   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     S     106     S     106     17   36  129    11   26   41   68   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     R     107     R     107     17   36  129    12   26   41   68   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     V     108     V     108     17   36  129    12   26   41   68   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     Y     109     Y     109     17   36  129    12   26   41   68   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     Q     110     Q     110     17   36  129    11   26   41   68   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     L     111     L     111     17   36  129    11   26   41   68   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     M     112     M     112     17   36  129    11   26   41   68   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     E     113     E     113     17   36  129    11   26   41   68   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     Q     114     Q     114     17   36  129    11   26   41   68   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     D     115     D     115     17   36  129     4   20   38   58   82   90  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     S     116     S     116     17   36  129     7   23   41   68   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     Y     117     Y     117     17   36  129     5   19   37   68   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     T     118     T     118      6   36  129     5    9   37   65   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     R     119     R     119      6   36  129     5   11   37   65   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     F     120     F     120     11   36  129     7   21   30   65   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     L     121     L     121     11   36  129     5   13   36   68   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     K     122     K     122     11   35  129     3    9   33   68   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     S     123     S     123     11   32  129     3    5   15   27   77   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     D     124     D     124     11   32  129     3   14   40   68   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     I     125     I     125     11   32  129     5    9   27   59   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     Y     126     Y     126     11   32  129     5   14   40   68   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     L     127     L     127     11   32  129     5   14   39   68   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     D     128     D     128     11   32  129     5    9   28   57   77   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     L     129     L     129     11   32  129     5   10   33   60   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     M     130     M     130     11   32  129     5   15   41   68   82   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_GDT     E     131     E     131     10   32  129     3    7   15   28   72   91  100  105  110  112  116  119  121  123  125  127  129  129  129  129 
LCS_AVERAGE  LCS_A:  46.91  (  11.17   29.55  100.00 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     12     26     41     68     82     91    100    105    110    112    116    119    121    123    125    127    129    129    129    129 
GDT PERCENT_CA   9.30  20.16  31.78  52.71  63.57  70.54  77.52  81.40  85.27  86.82  89.92  92.25  93.80  95.35  96.90  98.45 100.00 100.00 100.00 100.00
GDT RMS_LOCAL    0.33   0.62   1.03   1.46   1.64   1.88   2.05   2.19   2.37   2.43   2.63   2.80   2.91   3.05   3.19   3.33   3.52   3.52   3.52   3.52
GDT RMS_ALL_CA   3.84   3.96   3.72   3.61   3.63   3.56   3.59   3.57   3.55   3.56   3.54   3.55   3.55   3.53   3.52   3.52   3.52   3.52   3.52   3.52

#      Molecule1      Molecule2       DISTANCE
LGA    V       3      V       3          4.403
LGA    S       4      S       4          3.650
LGA    P       5      P       5          2.779
LGA    E       6      E       6          2.922
LGA    E       7      E       7          3.441
LGA    A       8      A       8          3.461
LGA    V       9      V       9          2.543
LGA    K      10      K      10          2.008
LGA    W      11      W      11          6.059
LGA    G      12      G      12          7.934
LGA    E      13      E      13          6.794
LGA    S      14      S      14          6.848
LGA    F      15      F      15          8.491
LGA    D      16      D      16          5.140
LGA    K      17      K      17          3.755
LGA    L      18      L      18          7.101
LGA    L      19      L      19          4.077
LGA    S      20      S      20          5.072
LGA    H      21      H      21          3.973
LGA    R      22      R      22          2.903
LGA    D      23      D      23          3.151
LGA    G      24      G      24          3.082
LGA    L      25      L      25          2.441
LGA    E      26      E      26          1.957
LGA    A      27      A      27          2.274
LGA    F      28      F      28          1.594
LGA    T      29      T      29          1.109
LGA    R      30      R      30          1.270
LGA    F      31      F      31          0.985
LGA    L      32      L      32          0.379
LGA    K      33      K      33          0.736
LGA    T      34      T      34          0.911
LGA    E      35      E      35          1.631
LGA    F      36      F      36          2.864
LGA    S      37      S      37          2.176
LGA    E      38      E      38          2.215
LGA    E      39      E      39          3.776
LGA    N      40      N      40          1.910
LGA    I      41      I      41          1.047
LGA    E      42      E      42          2.652
LGA    F      43      F      43          1.309
LGA    W      44      W      44          1.434
LGA    I      45      I      45          1.854
LGA    A      46      A      46          1.885
LGA    C      47      C      47          1.047
LGA    E      48      E      48          1.489
LGA    D      49      D      49          2.134
LGA    F      50      F      50          1.876
LGA    K      51      K      51          0.430
LGA    K      52      K      52          2.763
LGA    S      53      S      53          1.249
LGA    K      54      K      54          1.790
LGA    G      55      G      55          3.992
LGA    P      56      P      56          1.766
LGA    Q      57      Q      57          1.611
LGA    Q      58      Q      58          1.740
LGA    I      59      I      59          2.039
LGA    H      60      H      60          2.496
LGA    L      61      L      61          1.969
LGA    K      62      K      62          1.498
LGA    A      63      A      63          1.327
LGA    K      64      K      64          1.750
LGA    A      65      A      65          1.455
LGA    I      66      I      66          1.459
LGA    Y      67      Y      67          1.072
LGA    E      68      E      68          1.583
LGA    K      69      K      69          1.411
LGA    F      70      F      70          1.597
LGA    I      71      I      71          4.447
LGA    Q      72      Q      72          5.095
LGA    T      73      T      73          6.790
LGA    D      74      D      74          5.764
LGA    A      75      A      75          5.325
LGA    P      76      P      76          7.176
LGA    K      77      K      77          9.899
LGA    E      78      E      78         10.088
LGA    V      79      V      79          7.554
LGA    N      80      N      80          7.970
LGA    L      81      L      81          7.603
LGA    D      82      D      82          8.134
LGA    F      83      F      83          3.873
LGA    H      84      H      84          4.125
LGA    T      85      T      85          3.043
LGA    K      86      K      86          1.821
LGA    E      87      E      87          2.382
LGA    V      88      V      88          1.075
LGA    I      89      I      89          0.988
LGA    T      90      T      90          1.845
LGA    N      91      N      91          2.065
LGA    S      92      S      92          2.501
LGA    I      93      I      93          1.983
LGA    T      94      T      94          1.323
LGA    Q      95      Q      95          0.860
LGA    P      96      P      96          2.951
LGA    T      97      T      97          1.635
LGA    L      98      L      98          3.556
LGA    H      99      H      99          5.775
LGA    S     100      S     100          3.619
LGA    F     101      F     101          1.787
LGA    D     102      D     102          1.155
LGA    A     103      A     103          1.309
LGA    A     104      A     104          1.269
LGA    Q     105      Q     105          1.310
LGA    S     106      S     106          2.075
LGA    R     107      R     107          1.824
LGA    V     108      V     108          1.513
LGA    Y     109      Y     109          1.796
LGA    Q     110      Q     110          2.425
LGA    L     111      L     111          2.068
LGA    M     112      M     112          2.098
LGA    E     113      E     113          2.615
LGA    Q     114      Q     114          2.656
LGA    D     115      D     115          3.527
LGA    S     116      S     116          1.646
LGA    Y     117      Y     117          2.043
LGA    T     118      T     118          2.235
LGA    R     119      R     119          2.451
LGA    F     120      F     120          2.558
LGA    L     121      L     121          1.914
LGA    K     122      K     122          1.625
LGA    S     123      S     123          3.129
LGA    D     124      D     124          1.629
LGA    I     125      I     125          2.622
LGA    Y     126      Y     126          1.820
LGA    L     127      L     127          1.664
LGA    D     128      D     128          2.783
LGA    L     129      L     129          2.585
LGA    M     130      M     130          1.455
LGA    E     131      E     131          3.296

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  129  129    4.0    105    2.19    63.178    58.847     4.588

LGA_LOCAL      RMSD =  2.188  Number of atoms =  105  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  3.552  Number of atoms =  129 
Std_ALL_ATOMS  RMSD =  3.516  (standard rmsd on all 129 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.514400 * X  +  -0.172800 * Y  +  -0.839960 * Z  + 123.208183
  Y_new =   0.742832 * X  +   0.399617 * Y  +  -0.537128 * Z  +  -4.078028
  Z_new =   0.428478 * X  +  -0.900248 * Y  +  -0.077201 * Z  +   0.376539 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -1.656343    1.485250  [ DEG:   -94.9014     85.0986 ]
  Theta =  -0.442808   -2.698785  [ DEG:   -25.3710   -154.6290 ]
  Phi   =   2.176461   -0.965132  [ DEG:   124.7020    -55.2980 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0302TS393_5-D1                               
REMARK     2: T0302_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0302TS393_5-D1.T0302_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  129  129   4.0  105   2.19  58.847     3.52
REMARK  ---------------------------------------------------------- 
MOLECULE T0302TS393_5-D1
PFRMAT TS
TARGET T0302
MODEL 5
PARENT N/A
ATOM      3  CA  VAL     3     144.261   9.224   2.348  1.00 25.00           C
ATOM      4  CA  SER     4     144.798  11.304  -0.829  1.00 25.00           C
ATOM      5  CA  PRO     5     142.784  12.073  -3.895  1.00 25.00           C
ATOM      6  CA  GLU     6     141.696  10.340  -7.134  1.00 25.00           C
ATOM      7  CA  GLU     7     143.396   7.100  -6.000  1.00 25.00           C
ATOM      8  CA  ALA     8     141.620   7.324  -2.615  1.00 25.00           C
ATOM      9  CA  VAL     9     138.264   7.853  -4.382  1.00 25.00           C
ATOM     10  CA  LYS    10     138.932   4.812  -6.612  1.00 25.00           C
ATOM     11  CA  TRP    11     139.782   2.707  -3.529  1.00 25.00           C
ATOM     12  CA  GLY    12     136.545   3.845  -1.828  1.00 25.00           C
ATOM     13  CA  GLU    13     134.546   2.922  -4.961  1.00 25.00           C
ATOM     14  CA  SER    14     136.203  -0.529  -5.032  1.00 25.00           C
ATOM     15  CA  PHE    15     135.354  -1.041  -1.333  1.00 25.00           C
ATOM     16  CA  ASP    16     131.718  -0.045  -2.005  1.00 25.00           C
ATOM     17  CA  LYS    17     131.556  -2.513  -4.929  1.00 25.00           C
ATOM     18  CA  LEU    18     132.975  -5.285  -2.700  1.00 25.00           C
ATOM     19  CA  LEU    19     130.371  -4.488  -0.008  1.00 25.00           C
ATOM     20  CA  SER    20     132.948  -4.567   2.846  1.00 25.00           C
ATOM     21  CA  HIS    21     136.571  -3.422   2.986  1.00 25.00           C
ATOM     22  CA  ARG    22     137.286  -0.638   5.479  1.00 25.00           C
ATOM     23  CA  ASP    23     137.128   2.974   6.746  1.00 25.00           C
ATOM     24  CA  GLY    24     135.365   4.052   3.520  1.00 25.00           C
ATOM     25  CA  LEU    25     132.845   1.196   3.913  1.00 25.00           C
ATOM     26  CA  GLU    26     132.191   2.237   7.540  1.00 25.00           C
ATOM     27  CA  ALA    27     131.647   5.861   6.427  1.00 25.00           C
ATOM     28  CA  PHE    28     129.198   4.689   3.725  1.00 25.00           C
ATOM     29  CA  THR    29     127.301   2.602   6.315  1.00 25.00           C
ATOM     30  CA  ARG    30     127.118   5.628   8.655  1.00 25.00           C
ATOM     31  CA  PHE    31     125.786   7.793   5.791  1.00 25.00           C
ATOM     32  CA  LEU    32     123.141   5.144   4.984  1.00 25.00           C
ATOM     33  CA  LYS    33     122.099   5.026   8.668  1.00 25.00           C
ATOM     34  CA  THR    34     121.816   8.845   8.734  1.00 25.00           C
ATOM     35  CA  GLU    35     118.845   9.511   6.550  1.00 25.00           C
ATOM     36  CA  PHE    36     116.501   6.593   7.115  1.00 25.00           C
ATOM     37  CA  SER    37     117.217   4.257   4.164  1.00 25.00           C
ATOM     38  CA  GLU    38     119.939   1.641   4.764  1.00 25.00           C
ATOM     39  CA  GLU    39     117.403  -0.846   3.333  1.00 25.00           C
ATOM     40  CA  ASN    40     119.882  -1.831   0.585  1.00 25.00           C
ATOM     41  CA  ILE    41     122.623  -2.349   3.210  1.00 25.00           C
ATOM     42  CA  GLU    42     120.257  -4.532   5.285  1.00 25.00           C
ATOM     43  CA  PHE    43     119.403  -6.603   2.179  1.00 25.00           C
ATOM     44  CA  TRP    44     123.131  -7.048   1.421  1.00 25.00           C
ATOM     45  CA  ILE    45     123.756  -8.169   5.030  1.00 25.00           C
ATOM     46  CA  ALA    46     120.877 -10.682   4.773  1.00 25.00           C
ATOM     47  CA  CYS    47     122.318 -12.036   1.493  1.00 25.00           C
ATOM     48  CA  GLU    48     125.763 -12.400   3.128  1.00 25.00           C
ATOM     49  CA  ASP    49     124.190 -14.268   6.079  1.00 25.00           C
ATOM     50  CA  PHE    50     122.357 -16.601   3.658  1.00 25.00           C
ATOM     51  CA  LYS    51     125.631 -17.271   1.787  1.00 25.00           C
ATOM     52  CA  LYS    52     128.769 -19.520   1.848  1.00 25.00           C
ATOM     53  CA  SER    53     126.912 -21.492   4.531  1.00 25.00           C
ATOM     54  CA  LYS    54     126.234 -24.970   5.920  1.00 25.00           C
ATOM     55  CA  GLY    55     126.165 -27.044   2.757  1.00 25.00           C
ATOM     56  CA  PRO    56     122.477 -27.786   3.408  1.00 25.00           C
ATOM     57  CA  GLN    57     119.610 -27.798   5.947  1.00 25.00           C
ATOM     58  CA  GLN    58     121.254 -24.911   7.854  1.00 25.00           C
ATOM     59  CA  ILE    59     121.640 -22.944   4.592  1.00 25.00           C
ATOM     60  CA  HIS    60     117.953 -23.556   3.757  1.00 25.00           C
ATOM     61  CA  LEU    61     116.938 -22.353   7.248  1.00 25.00           C
ATOM     62  CA  LYS    62     119.069 -19.201   6.809  1.00 25.00           C
ATOM     63  CA  ALA    63     117.435 -18.540   3.409  1.00 25.00           C
ATOM     64  CA  LYS    64     113.963 -18.964   4.967  1.00 25.00           C
ATOM     65  CA  ALA    65     114.894 -16.520   7.766  1.00 25.00           C
ATOM     66  CA  ILE    66     116.134 -13.987   5.174  1.00 25.00           C
ATOM     67  CA  TYR    67     112.863 -14.354   3.215  1.00 25.00           C
ATOM     68  CA  GLU    68     110.850 -13.801   6.426  1.00 25.00           C
ATOM     69  CA  LYS    69     112.911 -10.669   7.208  1.00 25.00           C
ATOM     70  CA  PHE    70     112.299  -9.352   3.664  1.00 25.00           C
ATOM     71  CA  ILE    71     108.542  -9.983   4.052  1.00 25.00           C
ATOM     72  CA  GLN    72     106.002 -11.221   6.578  1.00 25.00           C
ATOM     73  CA  THR    73     105.489  -7.927   8.444  1.00 25.00           C
ATOM     74  CA  ASP    74     107.182  -4.608   9.421  1.00 25.00           C
ATOM     75  CA  ALA    75     107.672  -1.881   6.763  1.00 25.00           C
ATOM     76  CA  PRO    76     104.079  -2.678   5.764  1.00 25.00           C
ATOM     77  CA  LYS    77     103.617  -0.679   2.515  1.00 25.00           C
ATOM     78  CA  GLU    78     103.551   1.449  -0.637  1.00 25.00           C
ATOM     79  CA  VAL    79     106.608  -0.415  -1.944  1.00 25.00           C
ATOM     80  CA  ASN    80     104.374  -2.123  -4.462  1.00 25.00           C
ATOM     81  CA  LEU    81     106.359  -3.067  -7.517  1.00 25.00           C
ATOM     82  CA  ASP    82     104.007  -5.539  -9.167  1.00 25.00           C
ATOM     83  CA  PHE    83     105.125  -8.024  -6.561  1.00 25.00           C
ATOM     84  CA  HIS    84     106.003 -10.732  -9.124  1.00 25.00           C
ATOM     85  CA  THR    85     109.721 -10.351  -8.288  1.00 25.00           C
ATOM     86  CA  LYS    86     108.938 -10.663  -4.552  1.00 25.00           C
ATOM     87  CA  GLU    87     106.879 -13.822  -5.222  1.00 25.00           C
ATOM     88  CA  VAL    88     109.763 -15.300  -7.262  1.00 25.00           C
ATOM     89  CA  ILE    89     112.207 -14.516  -4.420  1.00 25.00           C
ATOM     90  CA  THR    90     109.860 -16.196  -1.904  1.00 25.00           C
ATOM     91  CA  ASN    91     109.618 -19.284  -4.156  1.00 25.00           C
ATOM     92  CA  SER    92     113.435 -19.418  -4.427  1.00 25.00           C
ATOM     93  CA  ILE    93     113.739 -19.170  -0.617  1.00 25.00           C
ATOM     94  CA  THR    94     111.339 -22.146  -0.216  1.00 25.00           C
ATOM     95  CA  GLN    95     113.098 -25.123  -1.883  1.00 25.00           C
ATOM     96  CA  PRO    96     116.784 -24.342  -2.405  1.00 25.00           C
ATOM     97  CA  THR    97     120.043 -22.655  -3.506  1.00 25.00           C
ATOM     98  CA  LEU    98     122.324 -19.639  -3.986  1.00 25.00           C
ATOM     99  CA  HIS    99     120.185 -18.775  -6.975  1.00 25.00           C
ATOM    100  CA  SER   100     117.108 -16.567  -6.407  1.00 25.00           C
ATOM    101  CA  PHE   101     118.630 -15.241  -3.153  1.00 25.00           C
ATOM    102  CA  ASP   102     121.909 -14.466  -4.974  1.00 25.00           C
ATOM    103  CA  ALA   103     119.978 -12.620  -7.718  1.00 25.00           C
ATOM    104  CA  ALA   104     118.099 -10.593  -5.066  1.00 25.00           C
ATOM    105  CA  GLN   105     121.413  -9.701  -3.366  1.00 25.00           C
ATOM    106  CA  SER   106     122.870  -8.596  -6.730  1.00 25.00           C
ATOM    107  CA  ARG   107     119.781  -6.429  -7.385  1.00 25.00           C
ATOM    108  CA  VAL   108     120.126  -4.845  -3.915  1.00 25.00           C
ATOM    109  CA  TYR   109     123.825  -4.119  -4.588  1.00 25.00           C
ATOM    110  CA  GLN   110     122.925  -2.513  -7.946  1.00 25.00           C
ATOM    111  CA  LEU   111     120.268  -0.354  -6.229  1.00 25.00           C
ATOM    112  CA  MET   112     122.822   0.733  -3.590  1.00 25.00           C
ATOM    113  CA  GLU   113     125.322   1.639  -6.346  1.00 25.00           C
ATOM    114  CA  GLN   114     122.630   3.679  -8.150  1.00 25.00           C
ATOM    115  CA  ASP   115     121.886   7.184  -6.729  1.00 25.00           C
ATOM    116  CA  SER   116     122.997   6.341  -3.198  1.00 25.00           C
ATOM    117  CA  TYR   117     126.543   7.716  -3.023  1.00 25.00           C
ATOM    118  CA  THR   118     125.286  11.068  -4.385  1.00 25.00           C
ATOM    119  CA  ARG   119     124.748  12.345  -0.814  1.00 25.00           C
ATOM    120  CA  PHE   120     128.293  11.250   0.137  1.00 25.00           C
ATOM    121  CA  LEU   121     129.701  13.054  -2.934  1.00 25.00           C
ATOM    122  CA  LYS   122     127.167  15.748  -4.021  1.00 25.00           C
ATOM    123  CA  SER   123     127.351  16.753  -0.349  1.00 25.00           C
ATOM    124  CA  ASP   124     129.817  16.822   2.523  1.00 25.00           C
ATOM    125  CA  ILE   125     132.137  14.496   4.493  1.00 25.00           C
ATOM    126  CA  TYR   126     133.367  12.916   1.228  1.00 25.00           C
ATOM    127  CA  LEU   127     134.033  16.395  -0.231  1.00 25.00           C
ATOM    128  CA  ASP   128     135.984  17.369   2.918  1.00 25.00           C
ATOM    129  CA  LEU   129     138.052  14.157   2.660  1.00 25.00           C
ATOM    130  CA  MET   130     138.796  14.900  -1.022  1.00 25.00           C
ATOM    131  CA  GLU   131     140.171  18.415  -1.376  1.00 25.00           C
TER
END
