
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  122 (  122),  selected  107 , name T0304TS168_5
# Molecule2: number of CA atoms  107 (  848),  selected  107 , name T0304.pdb
# PARAMETERS: T0304TS168_5.T0304.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    43        44 - 86          4.99    21.24
  LCS_AVERAGE:     29.19

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    23        56 - 78          1.99    19.19
  LONGEST_CONTINUOUS_SEGMENT:    23        57 - 79          1.90    19.36
  LONGEST_CONTINUOUS_SEGMENT:    23        58 - 80          1.84    19.44
  LCS_AVERAGE:     10.66

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    17        63 - 79          0.85    19.15
  LCS_AVERAGE:      6.46

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  107
LCS_GDT     D      16     D      16      3    7   15     2    3    4    6    7    7    9   14   17   18   22   26   27   30   32   35   36   38   42   43 
LCS_GDT     R      17     R      17      4    7   15     3    3    4    6    7    7    9   11   12   12   18   22   26   29   32   35   36   38   42   43 
LCS_GDT     P      18     P      18      4    7   15     3    3    4    6    7    7    9   11   12   12   14   24   26   30   32   35   37   40   42   44 
LCS_GDT     W      19     W      19      4    7   15     3    3    4    6    7    7    9   11   12   12   14   16   20   20   22   34   37   40   42   44 
LCS_GDT     W      20     W      20      4    7   15     3    3    4    6    7    8    9   11   12   12   14   17   20   20   22   25   29   40   42   44 
LCS_GDT     G      21     G      21      3    7   15     3    3    4    5    7    8    9   11   12   12   14   17   20   20   22   25   35   40   42   45 
LCS_GDT     L      22     L      22      3    7   15     3    3    4    6    7    8    9   11   12   12   14   17   20   20   22   36   41   44   45   47 
LCS_GDT     P      23     P      23      4    6   15     3    3    4    5    7    8    9   11   13   16   19   24   27   30   32   36   41   44   45   47 
LCS_GDT     C      24     C      24      4    6   15     3    4    6    7    7    8   11   14   15   22   25   28   29   34   36   37   41   44   45   47 
LCS_GDT     T      25     T      25      4    6   15     3    4    6    7    8   10   12   14   17   22   25   28   29   34   36   37   40   41   43   46 
LCS_GDT     V      26     V      26      4    6   15     3    4    6    7    7    8    9   13   17   19   24   28   29   34   36   37   40   41   43   45 
LCS_GDT     T      27     T      27      4    6   15     3    4    6    7    7    8    9   11   12   12   14   17   20   21   24   27   32   41   43   44 
LCS_GDT     P      28     P      28      4    6   15     0    3    5    5    5    8   12   12   12   15   16   17   24   25   25   31   38   42   44   46 
LCS_GDT     C      29     C      29      4    6   15     3    3    6    7    7   10   12   15   20   23   28   30   31   33   34   37   41   44   45   47 
LCS_GDT     F      30     F      30      4    6   15     3    3    6    7    7    8   12   17   20   23   28   30   31   33   36   37   42   44   47   49 
LCS_GDT     G      31     G      31      4    6   13     3    3    5    5    5    6    9   13   18   23   25   29   33   38   40   41   43   45   47   49 
LCS_GDT     A      32     A      32      3    6   12     3    3    3    6    8    8    9    9   10   13   16   26   36   40   42   43   44   45   48   50 
LCS_GDT     R      33     R      33      3    3   12     3    3    3    6    8    8   17   23   27   30   33   35   37   40   42   43   44   47   49   53 
LCS_GDT     L      34     L      34      3    3   12     3    4    4    4    8   10   15   21   25   29   33   35   37   40   42   43   46   51   54   58 
LCS_GDT     V      35     V      35      3    3   12     3    4    4    4    4    4    7    9   11   14   18   22   31   33   37   41   46   51   54   58 
LCS_GDT     Q      36     Q      36      3    4   15     3    4    4    4    5    8    9   11   17   19   21   23   26   32   36   42   48   51   54   58 
LCS_GDT     E      37     E      37      3    5   15     3    4    4    4    6    8    9   10   13   17   20   23   26   32   39   42   48   51   54   58 
LCS_GDT     G      38     G      38      3    5   15     3    3    4    5    6    8    9    9   11   15   18   19   24   27   31   34   36   41   43   45 
LCS_GDT     N      39     N      39      3    5   15     3    4    4    5    6    8    9   11   14   17   18   20   26   29   32   34   41   41   43   46 
LCS_GDT     R      40     R      40      3    5   15     3    4    4    4    5    5    5    8   10   19   22   24   26   29   34   39   42   46   49   51 
LCS_GDT     L      41     L      41      3    5   15     0    4    4    6    6    9   11   15   17   21   25   28   29   36   39   42   48   51   54   58 
LCS_GDT     H      42     H      42      3    3   39     0    3    4    5    6    9   12   15   17   19   22   24   27   32   35   42   46   50   54   58 
LCS_GDT     Y      43     Y      43      3    7   40     1    3    3    3    8   10   11   15   18   20   24   31   37   40   43   45   48   51   54   58 
LCS_GDT     L      44     L      44      5    7   43     4    5    6    7    9   10   14   16   23   27   33   36   37   40   43   45   48   51   54   58 
LCS_GDT     A      45     A      45      5    7   43     4    5    6    7    9   10   11   15   17   20   22   36   37   40   43   45   48   51   54   58 
LCS_GDT     D      46     D      46      5    7   43     4    4    6    6    6    7   11   15   16   19   22   31   37   40   43   45   48   51   54   58 
LCS_GDT     R      47     R      47      5    7   43     4    4    6    6    6    7   11   15   20   26   30   35   37   40   43   45   48   51   54   58 
LCS_GDT     A      48     A      48      5    8   43     3    5    6    8   11   15   19   25   28   30   33   36   37   40   43   45   48   51   54   58 
LCS_GDT     G      49     G      49      5    8   43     3    5    6    6    8   15   19   25   28   30   33   36   37   40   43   45   48   51   54   58 
LCS_GDT     I      50     I      50      4    8   43     4    5    6    6   10   21   24   26   28   30   33   36   37   40   43   45   48   51   54   58 
LCS_GDT     R      51     R      51      4    8   43     4    4    6    6    8    8   12   13   17   20   27   28   37   40   43   45   48   51   54   58 
LCS_GDT     G      52     G      52      4    8   43     4    4    6    6    8    8   11   19   23   25   32   36   37   40   43   45   48   51   54   58 
LCS_GDT     L      53     L      53      4   18   43     4    4    8   12   18   24   26   28   29   30   33   36   37   40   43   45   48   51   54   58 
LCS_GDT     F      54     F      54     13   22   43     3   11   13   16   20   24   26   28   29   30   33   35   37   40   42   45   48   51   54   58 
LCS_GDT     S      55     S      55     13   22   43     3    3    5    9   14   18   24   26   29   30   33   35   37   40   42   43   44   46   51   56 
LCS_GDT     D      56     D      56     13   23   43     9   11   13   16   19   24   26   28   29   30   33   36   37   40   43   45   48   51   54   58 
LCS_GDT     A      57     A      57     13   23   43     9   11   13   16   19   24   26   28   29   30   33   36   37   40   43   45   48   51   54   58 
LCS_GDT     D      58     D      58     13   23   43     9   11   13   16   20   24   26   28   29   30   33   36   37   40   43   45   48   51   54   58 
LCS_GDT     A      59     A      59     13   23   43     9   11   13   17   21   24   26   28   29   30   33   36   37   40   43   45   48   51   54   58 
LCS_GDT     Y      60     Y      60     13   23   43     9   11   13   16   21   24   26   28   29   30   33   36   37   40   43   45   48   51   54   58 
LCS_GDT     H      61     H      61     13   23   43     9   11   13   19   21   24   26   28   29   30   33   36   37   40   43   45   48   51   54   58 
LCS_GDT     L      62     L      62     13   23   43     9   11   13   19   21   24   26   28   29   30   33   36   37   40   43   45   48   51   54   58 
LCS_GDT     D      63     D      63     17   23   43     9   11   16   19   21   24   26   28   29   30   33   36   37   40   43   45   48   51   54   58 
LCS_GDT     Q      64     Q      64     17   23   43     9   11   16   19   21   24   26   28   29   30   33   36   37   40   43   45   48   51   54   58 
LCS_GDT     A      65     A      65     17   23   43    15   15   16   19   21   23   25   27   29   30   33   36   37   40   43   45   48   51   54   58 
LCS_GDT     F      66     F      66     17   23   43    15   15   16   19   21   24   26   28   29   30   33   36   37   40   43   45   48   51   54   58 
LCS_GDT     P      67     P      67     17   23   43    15   15   16   19   21   24   26   28   29   30   33   36   37   40   43   45   48   51   54   58 
LCS_GDT     L      68     L      68     17   23   43    15   15   16   19   21   24   26   28   29   30   33   36   37   40   43   45   48   51   54   58 
LCS_GDT     L      69     L      69     17   23   43    15   15   16   19   21   24   26   28   29   30   33   36   37   40   43   45   48   51   54   58 
LCS_GDT     M      70     M      70     17   23   43    15   15   16   19   21   24   26   28   29   30   33   36   37   40   43   45   48   51   54   58 
LCS_GDT     K      71     K      71     17   23   43    15   15   16   19   21   24   26   28   29   30   33   36   37   40   43   45   48   51   54   58 
LCS_GDT     Q      72     Q      72     17   23   43    15   15   16   19   21   24   26   28   29   30   33   36   37   40   43   45   48   51   54   58 
LCS_GDT     L      73     L      73     17   23   43    15   15   16   19   21   24   26   28   29   30   33   36   37   40   43   45   48   51   54   58 
LCS_GDT     E      74     E      74     17   23   43    15   15   16   19   21   24   26   28   29   30   33   36   37   40   43   45   48   51   54   58 
LCS_GDT     L      75     L      75     17   23   43    15   15   16   19   21   24   26   28   29   30   33   36   37   40   43   45   48   51   54   58 
LCS_GDT     M      76     M      76     17   23   43    15   15   16   19   21   24   26   28   29   30   33   36   37   40   43   45   48   51   54   58 
LCS_GDT     L      77     L      77     17   23   43    15   15   16   19   21   24   26   28   29   30   33   36   37   40   43   45   48   51   54   58 
LCS_GDT     T      78     T      78     17   23   43    15   15   16   19   21   24   26   28   29   30   33   36   37   40   43   45   48   51   54   58 
LCS_GDT     S      79     S      79     17   23   43    15   15   16   19   21   24   26   28   29   30   33   36   37   40   43   45   48   51   54   58 
LCS_GDT     G      80     G      80     16   23   43     3    3    4   18   20   24   26   28   29   30   33   36   37   40   43   45   47   51   54   55 
LCS_GDT     E      81     E      81      4   22   43     3    3    5    6    9   11   18   21   26   30   33   35   37   40   43   45   48   51   54   58 
LCS_GDT     L      82     L      82      4   21   43     3    3    4    6    9   14   18   19   22   30   33   34   37   40   42   45   47   49   54   57 
LCS_GDT     N      83     N      83      4    9   43     3    3    4    6    7   11   15   18   22   25   28   33   36   39   42   43   46   48   50   55 
LCS_GDT     P      84     P      84      4    9   43     1    3    5    6   10   11   13   15   19   25   27   30   34   36   40   42   44   47   49   52 
LCS_GDT     R      85     R      85      4    9   43     1    4    7    8   16   24   25   28   29   30   33   36   37   40   43   45   47   49   52   55 
LCS_GDT     H      86     H      86      4    9   43     1    4    6    9   19   24   26   28   29   30   33   36   37   40   43   45   48   51   54   58 
LCS_GDT     Q      87     Q      87      4    9   41     3    4    5    8   10   11   23   27   29   30   33   35   37   40   43   45   47   51   54   58 
LCS_GDT     H      88     H      88      4    9   41     3    5    5   11   16   20   24   25   29   30   33   35   37   40   42   43   46   50   54   58 
LCS_GDT     T      89     T      89      4    9   40     3    4    5    7   10   12   15   20   26   30   33   35   36   40   42   43   44   49   54   58 
LCS_GDT     V      90     V      90      4    9   38     4    5    5    7   10   11   14   16   18   21   24   27   31   34   36   39   43   48   50   58 
LCS_GDT     T      91     T      91      4    9   30     4    5    5    7   10   11   12   15   17   19   24   26   28   30   33   39   42   46   47   49 
LCS_GDT     L      92     L      92      5    9   30     3    5    6    8   10   11   12   17   20   23   28   30   31   33   34   39   42   48   52   57 
LCS_GDT     Y      93     Y      93      5    9   30     3    5    7    8   10   11   12   17   20   23   28   30   31   34   36   39   42   46   47   52 
LCS_GDT     A      94     A      94      5    9   30     4    4    7    8   10   11   12   17   20   23   28   30   31   34   36   39   42   46   46   48 
LCS_GDT     K      95     K      95      5    9   30     4    5    7    8   10   11   12   17   20   23   28   30   31   33   36   37   41   44   45   48 
LCS_GDT     G      96     G      96      5    9   30     4    5    7    8   10   11   12   17   20   23   28   30   31   33   35   37   41   44   45   47 
LCS_GDT     L      97     L      97      5    9   30     4    4    7    8   10   11   12   17   20   23   28   30   31   34   36   39   42   46   47   49 
LCS_GDT     T      98     T      98      4    9   30     4    5    7    8   10   11   12   17   20   23   28   30   31   34   37   39   42   46   47   49 
LCS_GDT     C      99     C      99      4    9   30     4    5    5    7    9   11   14   17   27   30   33   35   37   40   42   43   44   49   54   58 
LCS_GDT     K     100     K     100      4    9   30     3    4    5    7    8   11   24   25   27   30   33   35   37   40   42   43   44   49   54   58 
LCS_GDT     A     101     A     101      4    9   30     3    4    5    6    7   10   12   14   17   21   25   35   37   40   42   43   44   49   54   58 
LCS_GDT     D     102     D     102      4    6   28     3    4    4    6    7    8   11   13   17   21   25   28   29   34   36   41   44   48   54   58 
LCS_GDT     T     103     T     103      3    6   26     3    3    4    6    8    8   11   15   17   22   25   28   29   34   36   39   42   49   54   58 
LCS_GDT     L     104     L     104      3    6   26     3    3    4    6    8    8   11   13   17   22   25   28   29   34   36   37   42   48   54   58 
LCS_GDT     S     105     S     105      3    5   26     3    3    3    7    8   10   12   15   17   22   25   28   29   34   36   42   48   51   54   58 
LCS_GDT     S     106     S     106      4    6   26     3    4    4    7    8   10   12   15   21   25   28   31   36   38   43   45   48   51   54   58 
LCS_GDT     C     107     C     107      5    6   26     4    5    5    6    8    8    9   11   17   22   25   28   28   34   36   42   48   51   54   58 
LCS_GDT     D     108     D     108      5    6   26     4    5    5    7    8   10   12   15   17   22   25   31   37   40   42   45   48   51   54   57 
LCS_GDT     Y     109     Y     109      5    8   26     4    5    5    7    9   10   14   16   22   27   33   36   37   40   43   45   48   51   54   58 
LCS_GDT     V     110     V     110      5    8   26     4    5    5    6    8   10   11   13   21   27   33   36   37   40   43   45   48   51   54   58 
LCS_GDT     Y     111     Y     111      5    8   26     4    5    6    7    9   10   14   16   18   22   33   34   37   40   43   45   48   51   54   58 
LCS_GDT     L     112     L     112      5    8   26     3    4    5    7   14   20   24   26   29   30   33   35   37   40   42   43   44   49   54   58 
LCS_GDT     A     113     A     113      5    8   26     3    4    5    6    8   11   14   17   20   24   28   34   36   40   42   43   44   45   48   50 
LCS_GDT     V     114     V     114      5    8   26     3    4    5    7    8   10   14   17   20   23   28   30   31   34   36   39   42   44   47   49 
LCS_GDT     Y     115     Y     115      5    8   26     3    4    5    6    8   10   14   16   18   22   25   28   30   34   36   37   41   44   45   47 
LCS_GDT     P     116     P     116      5    8   26     3    4    5    7    9   10   14   16   18   22   25   28   29   34   36   37   40   41   43   45 
LCS_GDT     T     117     T     117      3    7   26     0    3    4    7    9   10   14   16   18   22   25   28   29   34   36   37   40   41   43   45 
LCS_GDT     P     118     P     118      3    7   26     3    3    4    6    8    9   13   16   18   22   25   28   29   34   36   37   40   41   43   45 
LCS_GDT     E     119     E     119      3    7   26     3    3    4    5    9   10   14   16   18   22   25   28   29   34   36   37   40   41   43   45 
LCS_GDT     M     120     M     120      3    7   26     3    3    4    6    8    9   13   15   18   20   25   28   29   34   36   37   39   41   42   45 
LCS_GDT     K     121     K     121      3    7   26     0    3    4    7    8   10   12   15   17   22   25   28   29   34   36   37   40   41   43   45 
LCS_GDT     N     122     N     122      3    5   26     0    3    3    7    8   10   12   15   17   22   25   28   29   34   36   37   40   41   43   45 
LCS_AVERAGE  LCS_A:  15.44  (   6.46   10.66   29.19 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     15     15     16     19     21     24     26     28     29     30     33     36     37     40     43     45     48     51     54     58 
GDT PERCENT_CA  14.02  14.02  14.95  17.76  19.63  22.43  24.30  26.17  27.10  28.04  30.84  33.64  34.58  37.38  40.19  42.06  44.86  47.66  50.47  54.21
GDT RMS_LOCAL    0.21   0.21   0.67   1.20   1.52   1.95   2.13   2.31   2.40   2.65   3.17   3.84   3.66   3.98   5.04   5.15   6.01   6.22   6.42   7.15
GDT RMS_ALL_CA  19.35  19.35  19.12  19.31  19.09  19.30  19.71  20.18  20.18  20.54  18.26  21.61  18.80  18.25  21.30  21.18  21.36  21.05  21.15  20.46

#      Molecule1      Molecule2       DISTANCE
LGA    D      16      D      16         39.962
LGA    R      17      R      17         39.053
LGA    P      18      P      18         37.368
LGA    W      19      W      19         35.770
LGA    W      20      W      20         31.974
LGA    G      21      G      21         31.693
LGA    L      22      L      22         30.212
LGA    P      23      P      23         32.401
LGA    C      24      C      24         31.323
LGA    T      25      T      25         34.026
LGA    V      26      V      26         30.845
LGA    T      27      T      27         30.776
LGA    P      28      P      28         30.159
LGA    C      29      C      29         24.003
LGA    F      30      F      30         21.641
LGA    G      31      G      31         19.583
LGA    A      32      A      32         15.614
LGA    R      33      R      33         11.940
LGA    L      34      L      34          9.498
LGA    V      35      V      35         13.038
LGA    Q      36      Q      36         15.391
LGA    E      37      E      37         14.840
LGA    G      38      G      38         20.232
LGA    N      39      N      39         22.502
LGA    R      40      R      40         18.628
LGA    L      41      L      41         13.875
LGA    H      42      H      42         15.112
LGA    Y      43      Y      43         13.207
LGA    L      44      L      44         12.130
LGA    A      45      A      45         11.783
LGA    D      46      D      46         14.047
LGA    R      47      R      47         13.632
LGA    A      48      A      48         10.207
LGA    G      49      G      49         10.537
LGA    I      50      I      50          7.357
LGA    R      51      R      51          9.821
LGA    G      52      G      52          8.589
LGA    L      53      L      53          3.057
LGA    F      54      F      54          3.494
LGA    S      55      S      55          6.655
LGA    D      56      D      56          3.536
LGA    A      57      A      57          2.335
LGA    D      58      D      58          2.192
LGA    A      59      A      59          1.545
LGA    Y      60      Y      60          1.125
LGA    H      61      H      61          1.180
LGA    L      62      L      62          1.351
LGA    D      63      D      63          1.262
LGA    Q      64      Q      64          3.268
LGA    A      65      A      65          4.046
LGA    F      66      F      66          2.487
LGA    P      67      P      67          2.673
LGA    L      68      L      68          3.405
LGA    L      69      L      69          2.465
LGA    M      70      M      70          0.581
LGA    K      71      K      71          1.653
LGA    Q      72      Q      72          1.829
LGA    L      73      L      73          1.576
LGA    E      74      E      74          1.377
LGA    L      75      L      75          0.252
LGA    M      76      M      76          1.795
LGA    L      77      L      77          2.593
LGA    T      78      T      78          2.039
LGA    S      79      S      79          1.835
LGA    G      80      G      80          2.667
LGA    E      81      E      81          7.961
LGA    L      82      L      82          7.376
LGA    N      83      N      83          7.762
LGA    P      84      P      84          7.567
LGA    R      85      R      85          3.813
LGA    H      86      H      86          2.423
LGA    Q      87      Q      87          7.907
LGA    H      88      H      88         11.924
LGA    T      89      T      89         14.978
LGA    V      90      V      90         16.729
LGA    T      91      T      91         19.395
LGA    L      92      L      92         15.709
LGA    Y      93      Y      93         17.417
LGA    A      94      A      94         18.199
LGA    K      95      K      95         22.316
LGA    G      96      G      96         21.742
LGA    L      97      L      97         16.849
LGA    T      98      T      98         16.399
LGA    C      99      C      99         11.625
LGA    K     100      K     100         12.559
LGA    A     101      A     101         13.209
LGA    D     102      D     102         15.443
LGA    T     103      T     103         16.098
LGA    L     104      L     104         16.384
LGA    S     105      S     105         14.928
LGA    S     106      S     106          9.799
LGA    C     107      C     107         15.164
LGA    D     108      D     108         12.987
LGA    Y     109      Y     109          8.411
LGA    V     110      V     110          6.981
LGA    Y     111      Y     111          6.147
LGA    L     112      L     112          8.837
LGA    A     113      A     113         14.656
LGA    V     114      V     114         18.787
LGA    Y     115      Y     115         25.068
LGA    P     116      P     116         29.785
LGA    T     117      T     117         35.130
LGA    P     118      P     118         41.480
LGA    E     119      E     119         46.331
LGA    M     120      M     120         52.926
LGA    K     121      K     121         58.387
LGA    N     122      N     122         61.991

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  122  107    4.0     28    2.31    25.000    21.395     1.161

LGA_LOCAL      RMSD =  2.311  Number of atoms =   28  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 20.184  Number of atoms =  107 
Std_ALL_ATOMS  RMSD = 17.088  (standard rmsd on all 107 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.758829 * X  +  -0.651235 * Y  +   0.008443 * Z  +  50.162323
  Y_new =   0.287657 * X  +  -0.323495 * Y  +   0.901446 * Z  +  18.984673
  Z_new =  -0.584322 * X  +   0.686472 * Y  +   0.432810 * Z  +  49.649876 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   1.008263   -2.133330  [ DEG:    57.7692   -122.2308 ]
  Theta =   0.624044    2.517549  [ DEG:    35.7551    144.2449 ]
  Phi   =   2.779250   -0.362343  [ DEG:   159.2393    -20.7607 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0304TS168_5                                  
REMARK     2: T0304.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0304TS168_5.T0304.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  122  107   4.0   28   2.31  21.395    17.09
REMARK  ---------------------------------------------------------- 
MOLECULE T0304TS168_5
PFRMAT TS
TARGET T0304
MODEL 5
PARENT N/A
ATOM      1  CA  MET     1      55.142  -2.913  61.510  1.00 25.00           C
ATOM      2  CA  SER     2      51.725  -3.545  60.037  1.00 25.00           C
ATOM      3  CA  ASP     3      50.419   0.084  59.871  1.00 25.00           C
ATOM      4  CA  THR     4      46.959  -0.236  61.513  1.00 25.00           C
ATOM      5  CA  LEU     5      45.793   3.352  62.191  1.00 25.00           C
ATOM      6  CA  PRO     6      42.101   2.608  62.544  1.00 25.00           C
ATOM      7  CA  GLY     7      40.160   5.004  64.781  1.00 25.00           C
ATOM      8  CA  THR     8      42.232   5.729  67.917  1.00 25.00           C
ATOM      9  CA  THR     9      42.799   9.444  68.465  1.00 25.00           C
ATOM     10  CA  LEU    10      44.562  12.788  67.781  1.00 25.00           C
ATOM     11  CA  PRO    11      42.429  15.025  70.021  1.00 25.00           C
ATOM     12  CA  ASP    12      40.133  17.518  71.742  1.00 25.00           C
ATOM     13  CA  ASP    13      43.022  18.527  73.922  1.00 25.00           C
ATOM     14  CA  ASN    14      45.055  16.223  76.099  1.00 25.00           C
ATOM     15  CA  HIS    15      44.423  14.582  79.474  1.00 25.00           C
ATOM     16  CA  ASP    16      47.706  12.658  79.425  1.00 25.00           C
ATOM     17  CA  ARG    17      50.794  14.777  79.140  1.00 25.00           C
ATOM     18  CA  PRO    18      53.519  16.549  77.084  1.00 25.00           C
ATOM     19  CA  TRP    19      54.473  14.771  73.829  1.00 25.00           C
ATOM     20  CA  TRP    20      57.263  15.174  71.210  1.00 25.00           C
ATOM     21  CA  GLY    21      58.363  18.068  69.049  1.00 25.00           C
ATOM     22  CA  LEU    22      58.166  17.884  65.199  1.00 25.00           C
ATOM     23  CA  PRO    23      60.062  19.940  62.574  1.00 25.00           C
ATOM     24  CA  CYS    24      58.482  20.496  59.221  1.00 25.00           C
ATOM     25  CA  THR    25      55.690  22.290  61.167  1.00 25.00           C
ATOM     26  CA  VAL    26      54.119  22.993  57.776  1.00 25.00           C
ATOM     27  CA  THR    27      51.605  20.139  57.869  1.00 25.00           C
ATOM     28  CA  PRO    28      54.391  17.956  56.641  1.00 25.00           C
ATOM     29  CA  CYS    29      51.629  16.319  54.635  1.00 25.00           C
ATOM     30  CA  PHE    30      53.109  12.859  53.917  1.00 25.00           C
ATOM     31  CA  GLY    31      53.411  10.794  50.706  1.00 25.00           C
ATOM     32  CA  ALA    32      49.770   9.662  51.062  1.00 25.00           C
ATOM     33  CA  ARG    33      48.663  13.295  51.555  1.00 25.00           C
ATOM     34  CA  LEU    34      50.618  14.341  48.433  1.00 25.00           C
ATOM     35  CA  VAL    35      48.977  11.520  46.429  1.00 25.00           C
ATOM     36  CA  GLN    36      45.521  12.630  47.653  1.00 25.00           C
ATOM     37  CA  GLU    37      46.293  16.241  46.637  1.00 25.00           C
ATOM     38  CA  GLY    38      47.411  15.052  43.172  1.00 25.00           C
ATOM     39  CA  ASN    39      44.181  13.030  42.796  1.00 25.00           C
ATOM     40  CA  ARG    40      42.115  16.096  43.798  1.00 25.00           C
ATOM     41  CA  LEU    41      43.993  18.229  41.230  1.00 25.00           C
ATOM     42  CA  HIS    42      43.336  15.598  38.527  1.00 25.00           C
ATOM     43  CA  TYR    43      39.617  15.553  39.438  1.00 25.00           C
ATOM     44  CA  LEU    44      39.496  19.376  39.230  1.00 25.00           C
ATOM     45  CA  ALA    45      41.188  19.267  35.797  1.00 25.00           C
ATOM     46  CA  ASP    46      38.652  16.658  34.602  1.00 25.00           C
ATOM     47  CA  ARG    47      35.771  18.848  35.857  1.00 25.00           C
ATOM     48  CA  ALA    48      36.242  22.509  36.847  1.00 25.00           C
ATOM     49  CA  GLY    49      36.872  23.520  33.174  1.00 25.00           C
ATOM     50  CA  ILE    50      40.682  23.603  33.074  1.00 25.00           C
ATOM     51  CA  ARG    51      43.434  22.382  30.745  1.00 25.00           C
ATOM     52  CA  GLY    52      41.962  20.219  28.013  1.00 25.00           C
ATOM     53  CA  LEU    53      39.417  17.393  28.352  1.00 25.00           C
ATOM     54  CA  PHE    54      41.696  14.507  29.268  1.00 25.00           C
ATOM     55  CA  SER    55      43.948  11.438  28.933  1.00 25.00           C
ATOM     56  CA  ASP    56      47.095  11.951  26.774  1.00 25.00           C
ATOM     57  CA  ALA    57      48.608  15.223  25.478  1.00 25.00           C
ATOM     58  CA  ASP    58      45.973  17.231  27.401  1.00 25.00           C
ATOM     59  CA  ALA    59      46.753  15.252  30.586  1.00 25.00           C
ATOM     60  CA  TYR    60      50.494  15.922  30.115  1.00 25.00           C
ATOM     61  CA  HIS    61      49.793  19.658  29.651  1.00 25.00           C
ATOM     62  CA  LEU    62      47.672  19.681  32.840  1.00 25.00           C
ATOM     63  CA  ASP    63      50.487  17.927  34.754  1.00 25.00           C
ATOM     64  CA  GLN    64      53.007  20.502  33.458  1.00 25.00           C
ATOM     65  CA  ALA    65      50.694  23.352  34.552  1.00 25.00           C
ATOM     66  CA  PHE    66      50.354  21.776  38.025  1.00 25.00           C
ATOM     67  CA  PRO    67      54.163  21.464  38.282  1.00 25.00           C
ATOM     68  CA  LEU    68      54.557  25.139  37.276  1.00 25.00           C
ATOM     69  CA  LEU    69      51.989  26.164  39.926  1.00 25.00           C
ATOM     70  CA  MET    70      53.864  24.125  42.569  1.00 25.00           C
ATOM     71  CA  LYS    71      57.158  25.797  41.559  1.00 25.00           C
ATOM     72  CA  GLN    72      55.516  29.247  41.825  1.00 25.00           C
ATOM     73  CA  LEU    73      54.169  28.366  45.299  1.00 25.00           C
ATOM     74  CA  GLU    74      57.656  27.212  46.385  1.00 25.00           C
ATOM     75  CA  LEU    75      59.169  30.484  45.089  1.00 25.00           C
ATOM     76  CA  MET    76      56.534  32.491  47.011  1.00 25.00           C
ATOM     77  CA  LEU    77      57.314  30.513  50.197  1.00 25.00           C
ATOM     78  CA  THR    78      61.055  31.182  49.726  1.00 25.00           C
ATOM     79  CA  SER    79      60.245  34.923  49.423  1.00 25.00           C
ATOM     80  CA  GLY    80      58.942  38.393  50.316  1.00 25.00           C
ATOM     81  CA  GLU    81      57.643  36.747  53.536  1.00 25.00           C
ATOM     82  CA  LEU    82      54.004  36.471  54.611  1.00 25.00           C
ATOM     83  CA  ASN    83      54.728  38.943  57.421  1.00 25.00           C
ATOM     84  CA  PRO    84      51.164  40.172  57.213  1.00 25.00           C
ATOM     85  CA  ARG    85      49.448  39.994  53.869  1.00 25.00           C
ATOM     86  CA  HIS    86      48.277  37.202  51.588  1.00 25.00           C
ATOM     87  CA  GLN    87      48.880  34.369  54.003  1.00 25.00           C
ATOM     88  CA  HIS    88      48.595  30.553  54.356  1.00 25.00           C
ATOM     89  CA  THR    89      50.361  27.221  53.642  1.00 25.00           C
ATOM     90  CA  VAL    90      53.098  24.654  53.018  1.00 25.00           C
ATOM     91  CA  THR    91      56.095  22.815  51.493  1.00 25.00           C
ATOM     92  CA  LEU    92      55.780  22.107  47.763  1.00 25.00           C
ATOM     93  CA  TYR    93      56.787  19.249  45.510  1.00 25.00           C
ATOM     94  CA  ALA    94      56.320  15.436  45.204  1.00 25.00           C
ATOM     95  CA  LYS    95      55.570  11.721  45.430  1.00 25.00           C
ATOM     96  CA  GLY    96      53.585  11.549  42.185  1.00 25.00           C
ATOM     97  CA  LEU    97      52.376  15.207  42.029  1.00 25.00           C
ATOM     98  CA  THR    98      51.758  18.426  43.971  1.00 25.00           C
ATOM     99  CA  CYS    99      48.442  20.240  44.199  1.00 25.00           C
ATOM    100  CA  LYS   100      45.795  21.242  46.721  1.00 25.00           C
ATOM    101  CA  ALA   101      44.872  20.257  50.263  1.00 25.00           C
ATOM    102  CA  ASP   102      42.587  19.678  53.221  1.00 25.00           C
ATOM    103  CA  THR   103      41.157  16.975  50.943  1.00 25.00           C
ATOM    104  CA  LEU   104      37.765  18.579  51.372  1.00 25.00           C
ATOM    105  CA  SER   105      37.162  22.369  51.713  1.00 25.00           C
ATOM    106  CA  SER   106      40.522  23.611  50.472  1.00 25.00           C
ATOM    107  CA  CYS   107      40.619  21.168  47.508  1.00 25.00           C
ATOM    108  CA  ASP   108      40.056  24.204  45.218  1.00 25.00           C
ATOM    109  CA  TYR   109      43.535  25.389  44.373  1.00 25.00           C
ATOM    110  CA  VAL   110      46.761  25.044  42.334  1.00 25.00           C
ATOM    111  CA  TYR   111      49.518  25.258  44.898  1.00 25.00           C
ATOM    112  CA  LEU   112      50.666  23.136  47.816  1.00 25.00           C
ATOM    113  CA  ALA   113      51.289  19.538  48.940  1.00 25.00           C
ATOM    114  CA  VAL   114      54.527  17.855  50.120  1.00 25.00           C
ATOM    115  CA  TYR   115      57.206  15.135  50.427  1.00 25.00           C
ATOM    116  CA  PRO   116      61.000  14.848  50.551  1.00 25.00           C
ATOM    117  CA  THR   117      63.516  12.751  52.518  1.00 25.00           C
ATOM    118  CA  PRO   118      67.249  11.788  52.711  1.00 25.00           C
ATOM    119  CA  GLU   119      70.769  12.939  53.646  1.00 25.00           C
ATOM    120  CA  MET   120      72.398  11.336  56.710  1.00 25.00           C
ATOM    121  CA  LYS   121      71.896   9.397  59.944  1.00 25.00           C
ATOM    122  CA  ASN   122      69.217   8.838  62.610  1.00 25.00           C
TER
END
