
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  122 (  122),  selected  107 , name T0304TS599_1
# Molecule2: number of CA atoms  107 (  848),  selected  107 , name T0304.pdb
# PARAMETERS: T0304TS599_1.T0304.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    44        48 - 91          4.99    14.24
  LONGEST_CONTINUOUS_SEGMENT:    44        49 - 92          4.69    14.26
  LONGEST_CONTINUOUS_SEGMENT:    44        50 - 93          4.81    14.39
  LCS_AVERAGE:     28.16

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    33        53 - 85          1.93    14.75
  LCS_AVERAGE:     14.86

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    21        62 - 82          0.95    14.64
  LONGEST_CONTINUOUS_SEGMENT:    21        63 - 83          0.96    15.07
  LONGEST_CONTINUOUS_SEGMENT:    21        64 - 84          0.95    15.47
  LCS_AVERAGE:      8.85

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  107
LCS_GDT     D      16     D      16      3    7   11     3    4    5    7    7    8   10   11   15   16   17   18   20   21   24   25   28   31   34   36 
LCS_GDT     R      17     R      17      3    7   11     3    3    5    7    7    9   10   11   15   16   17   18   20   21   24   25   28   31   34   36 
LCS_GDT     P      18     P      18      4    7   11     3    4    5    7    7    9   10   11   15   16   17   18   20   21   24   25   28   31   34   36 
LCS_GDT     W      19     W      19      4    7   12     3    4    4    5    5    9   10   11   15   16   17   18   20   21   24   25   28   32   35   38 
LCS_GDT     W      20     W      20      4    7   12     3    4    4    7    7   10   12   14   15   16   18   21   24   27   30   32   35   38   39   40 
LCS_GDT     G      21     G      21      4    7   12     3    4    5    7    8    9   12   14   22   27   28   30   31   34   39   42   43   46   50   56 
LCS_GDT     L      22     L      22      4    7   12     3    4    5    7    7    8   10   11   15   16   17   19   24   30   37   42   43   46   51   56 
LCS_GDT     P      23     P      23      4    6   13     3    4    5    6    6    7    9   10   12   13   16   18   24   26   28   30   34   46   50   56 
LCS_GDT     C      24     C      24      4    6   13     3    4    5    6    6    7   11   13   15   16   20   20   39   42   45   47   50   53   54   58 
LCS_GDT     T      25     T      25      4    6   13     3    4    5    6    6    7   11   11   12   15   20   21   26   27   45   47   48   53   54   56 
LCS_GDT     V      26     V      26      4    6   13     3    4    5    6    6    8   11   14   17   19   23   27   40   43   45   48   50   53   55   58 
LCS_GDT     T      27     T      27      4    6   13     3    3    4    4    6    8   11   14   17   19   23   27   40   43   45   48   50   53   55   58 
LCS_GDT     P      28     P      28      4    5   13     3    3    4    4    5    7    9   10   27   30   34   35   40   43   45   48   50   52   55   58 
LCS_GDT     C      29     C      29      3    4   13     3    3    3    4    4    6    7   10   12   13   14   17   19   21   44   48   50   52   53   58 
LCS_GDT     F      30     F      30      3    4   13     3    3    3    4    5    6   10   14   19   30   34   37   40   43   45   48   50   53   55   58 
LCS_GDT     G      31     G      31      3    3   13     3    3    3    5    7    8   10   18   20   22   27   35   39   43   45   48   50   53   55   58 
LCS_GDT     A      32     A      32      3    3   13     4    4    5    5    6    7    7   14   14   18   20   25   25   28   37   42   46   50   54   57 
LCS_GDT     R      33     R      33      3    3   13     3    3    5    5    6    7   10   14   19   22   27   32   34   37   41   46   48   51   54   58 
LCS_GDT     L      34     L      34      3    3   16     3    4    7    9    9    9    9   10   14   22   24   30   38   39   41   45   48   50   54   57 
LCS_GDT     V      35     V      35      3    3   16     3    4    4    4    4    5    9   10   13   15   16   18   23   24   29   40   44   47   50   56 
LCS_GDT     Q      36     Q      36      4    4   16     3    4    4    4    4    7    7    9   13   15   15   18   22   23   27   31   34   35   39   49 
LCS_GDT     E      37     E      37      4    4   16     3    4    4    4    5    8   10   11   15   16   17   18   20   24   27   31   37   46   50   56 
LCS_GDT     G      38     G      38      4    6   16     3    4    4    5    6    7   10   11   15   16   17   18   20   22   27   30   34   35   38   42 
LCS_GDT     N      39     N      39      5    6   16     3    4    5    6    6    7    9   10   13   15   15   16   19   21   24   30   33   34   38   42 
LCS_GDT     R      40     R      40      5    6   16     3    4    5    6    6    7   10   11   15   16   17   18   20   21   24   26   33   34   38   41 
LCS_GDT     L      41     L      41      5    6   16     3    4    5    6    6    8   10   11   15   16   17   18   20   21   24   29   34   36   45   47 
LCS_GDT     H      42     H      42      5    6   24     3    4    5    7    7    9   10   10   12   14   17   19   22   22   23   26   30   34   36   43 
LCS_GDT     Y      43     Y      43      5    6   24     3    4    5    6    6    7    9   12   14   17   18   20   22   24   27   27   30   34   36   41 
LCS_GDT     L      44     L      44      6    6   24     5    5    7    7   11   12   13   16   18   19   21   22   23   24   27   28   31   36   39   43 
LCS_GDT     A      45     A      45      6    6   25     5    5    7    7    9   11   12   16   18   19   21   24   36   38   40   43   44   46   48   54 
LCS_GDT     D      46     D      46      6    6   25     5    5    7    7   11   12   14   17   18   19   25   34   36   38   40   43   44   46   50   56 
LCS_GDT     R      47     R      47      6    6   41     5    5    7    7    9   11   12   13   15   17   20   22   23   24   29   38   42   45   46   52 
LCS_GDT     A      48     A      48      6    6   44     5    5    7    7    9   11   12   13   15   17   20   20   26   36   40   43   44   46   50   56 
LCS_GDT     G      49     G      49      6    6   44     0    4    4    6    9   11   12   13   15   17   23   36   38   39   41   45   48   50   53   57 
LCS_GDT     I      50     I      50      4   22   44     3    4    5    8   15   21   26   33   36   37   39   39   39   42   44   46   50   53   55   58 
LCS_GDT     R      51     R      51      4   30   44     3    4    4    8   10   26   28   31   35   37   39   39   40   43   45   48   50   53   55   58 
LCS_GDT     G      52     G      52      4   32   44     3    3    4   14   22   26   29   32   35   37   39   39   40   43   45   48   50   53   55   58 
LCS_GDT     L      53     L      53     17   33   44     5   14   20   24   27   32   33   35   36   37   39   39   40   43   45   48   50   53   55   58 
LCS_GDT     F      54     F      54     17   33   44     7   12   19   24   27   32   33   35   36   37   39   39   40   43   45   48   50   53   55   58 
LCS_GDT     S      55     S      55     17   33   44     8   12   17   23   27   32   33   35   36   37   39   39   40   43   45   48   50   53   55   58 
LCS_GDT     D      56     D      56     17   33   44     7   12   17   23   27   32   33   35   36   37   39   39   40   43   45   48   50   53   55   58 
LCS_GDT     A      57     A      57     17   33   44     8   12   17   22   27   32   33   35   36   37   39   39   40   43   45   48   50   53   55   58 
LCS_GDT     D      58     D      58     17   33   44     8   12   17   23   27   32   33   35   36   37   39   39   40   43   45   48   50   53   55   58 
LCS_GDT     A      59     A      59     17   33   44     8   12   19   24   27   32   33   35   36   37   39   39   40   43   45   48   50   53   55   58 
LCS_GDT     Y      60     Y      60     17   33   44     8   12   19   24   27   32   33   35   36   37   39   39   40   43   45   48   50   53   55   58 
LCS_GDT     H      61     H      61     20   33   44     8   12   19   24   27   32   33   35   36   37   39   39   40   43   45   48   50   53   55   58 
LCS_GDT     L      62     L      62     21   33   44     8   14   20   24   27   32   33   35   36   37   39   39   40   43   45   48   50   53   55   58 
LCS_GDT     D      63     D      63     21   33   44     8   14   20   24   27   32   33   35   36   37   39   39   40   43   45   48   50   53   55   58 
LCS_GDT     Q      64     Q      64     21   33   44     7   17   20   24   27   32   33   35   36   37   39   39   40   43   45   48   50   53   55   58 
LCS_GDT     A      65     A      65     21   33   44    12   16   20   24   27   32   33   35   36   37   39   39   40   43   45   48   50   53   55   58 
LCS_GDT     F      66     F      66     21   33   44    12   17   20   24   27   32   33   35   36   37   39   39   40   43   45   48   50   53   55   58 
LCS_GDT     P      67     P      67     21   33   44    12   17   20   24   27   32   33   35   36   37   39   39   40   43   45   48   50   53   55   58 
LCS_GDT     L      68     L      68     21   33   44    12   17   20   24   27   32   33   35   36   37   39   39   40   43   45   48   50   53   55   58 
LCS_GDT     L      69     L      69     21   33   44    12   17   20   24   27   32   33   35   36   37   39   39   40   43   45   48   50   53   55   58 
LCS_GDT     M      70     M      70     21   33   44    12   17   20   24   27   32   33   35   36   37   39   39   40   43   45   48   50   53   55   58 
LCS_GDT     K      71     K      71     21   33   44    12   17   20   24   27   32   33   35   36   37   39   39   40   43   45   48   50   53   55   58 
LCS_GDT     Q      72     Q      72     21   33   44    12   17   20   24   27   32   33   35   36   37   39   39   40   43   45   48   50   53   55   58 
LCS_GDT     L      73     L      73     21   33   44    12   17   20   24   27   32   33   35   36   37   39   39   40   43   45   48   50   53   55   58 
LCS_GDT     E      74     E      74     21   33   44    12   17   20   24   27   32   33   35   36   37   39   39   40   43   45   48   50   53   55   58 
LCS_GDT     L      75     L      75     21   33   44    12   17   20   24   27   32   33   35   36   37   39   39   40   43   45   48   50   53   55   58 
LCS_GDT     M      76     M      76     21   33   44    12   17   20   24   27   32   33   35   36   37   39   39   40   43   45   48   50   53   55   58 
LCS_GDT     L      77     L      77     21   33   44    12   17   20   24   27   32   33   35   36   37   39   39   40   43   45   48   50   53   55   58 
LCS_GDT     T      78     T      78     21   33   44    12   17   20   24   27   32   33   35   36   37   39   39   40   43   45   48   50   53   55   58 
LCS_GDT     S      79     S      79     21   33   44    10   17   20   24   27   32   33   35   36   37   39   39   40   43   45   48   50   53   55   58 
LCS_GDT     G      80     G      80     21   33   44     4   17   20   24   27   32   33   35   36   37   39   39   40   43   45   48   50   53   55   58 
LCS_GDT     E      81     E      81     21   33   44     4   17   19   23   27   32   33   35   36   37   39   39   40   43   45   48   50   53   55   58 
LCS_GDT     L      82     L      82     21   33   44     4   17   19   23   27   32   33   35   36   37   39   39   40   43   45   48   50   53   55   58 
LCS_GDT     N      83     N      83     21   33   44     4    4   19   23   27   32   33   35   36   37   39   39   40   42   45   47   50   53   55   58 
LCS_GDT     P      84     P      84     21   33   44     4    6   15   21   24   32   33   35   36   37   39   39   39   42   45   47   50   53   55   58 
LCS_GDT     R      85     R      85      5   33   44     4    4    6   19   24   32   33   35   36   37   39   39   39   42   45   47   50   53   55   58 
LCS_GDT     H      86     H      86      5   28   44     4    4    6    6    7    7   11   30   35   37   39   39   39   42   45   47   50   53   55   58 
LCS_GDT     Q      87     Q      87      5    8   44     3    3    6    6    7    9   10   14   14   16   19   37   40   43   45   48   50   53   55   58 
LCS_GDT     H      88     H      88      7    8   44     5    7    7    9    9   13   16   18   31   34   35   37   40   43   45   48   50   53   55   58 
LCS_GDT     T      89     T      89      7    8   44     5    7    7   16   24   27   29   31   33   34   35   37   40   43   45   48   50   53   55   58 
LCS_GDT     V      90     V      90      7    8   44     5    7    7    9   10   26   28   31   33   34   35   37   40   43   45   48   50   53   55   58 
LCS_GDT     T      91     T      91      7    8   44     5    7    7    9    9   13   16   22   25   30   34   36   40   43   45   48   50   52   55   58 
LCS_GDT     L      92     L      92      7    8   44     5    7    7    9    9   13   15   15   16   19   21   30   37   43   45   48   50   52   55   57 
LCS_GDT     Y      93     Y      93      7    8   44     4    7    7    9    9   13   15   15   16   18   20   26   29   33   38   41   47   50   53   55 
LCS_GDT     A      94     A      94      7    8   24     4    7    7    9    9   13   15   15   16   18   20   25   26   29   31   34   36   40   44   48 
LCS_GDT     K      95     K      95      4    8   24     3    3    5    7    8   13   15   15   16   18   20   25   25   27   30   33   35   37   39   43 
LCS_GDT     G      96     G      96      6    8   24     4    6    6    7    8   10   15   15   16   18   20   25   26   29   30   33   35   37   40   45 
LCS_GDT     L      97     L      97      6    8   24     4    6    6    7    8   13   15   15   16   19   20   25   29   32   35   38   41   45   50   53 
LCS_GDT     T      98     T      98      6    8   24     4    6    6    7    8   13   15   15   16   19   21   27   31   36   39   43   46   50   52   54 
LCS_GDT     C      99     C      99      6    8   24     4    6    6    7    8   13   15   15   19   25   29   35   40   41   45   48   50   52   55   58 
LCS_GDT     K     100     K     100      6    8   24     4    6    6    7    8   13   15   17   23   28   34   35   40   43   45   48   50   52   55   58 
LCS_GDT     A     101     A     101      6    8   24     4    6    6    7   10   26   29   31   33   34   35   37   40   43   45   48   50   53   55   58 
LCS_GDT     D     102     D     102      3    8   24     3    3    5    7    8   13   15   15   16   32   35   37   40   43   45   48   50   53   55   58 
LCS_GDT     T     103     T     103      3    5   24     3    3    4    9    9    9   10   16   20   22   26   30   35   41   45   48   50   53   55   58 
LCS_GDT     L     104     L     104      3    5   24     4    4    5    5   10   13   16   18   20   22   24   26   28   31   33   46   47   53   54   58 
LCS_GDT     S     105     S     105      3   11   24     4    4    5    5   11   12   15   17   18   22   24   26   28   31   33   36   37   40   45   49 
LCS_GDT     S     106     S     106      3   11   24     4    4    5    5   11   12   16   18   20   22   24   26   28   31   33   36   38   44   47   50 
LCS_GDT     C     107     C     107      3   11   24     3    3    5    7   10   13   16   18   20   22   24   26   28   31   33   36   38   44   46   50 
LCS_GDT     D     108     D     108      8   11   24     3    7    8    9   11   13   16   18   20   22   24   26   28   31   33   36   38   44   47   50 
LCS_GDT     Y     109     Y     109      8   11   24     3    7    8    9   11   13   16   18   20   22   24   26   28   31   33   36   38   44   48   56 
LCS_GDT     V     110     V     110      8   11   24     3    7    8    9   11   13   16   18   20   22   24   26   28   38   41   43   48   50   53   56 
LCS_GDT     Y     111     Y     111      8   11   24     3    7    8    9   16   26   32   35   36   37   39   39   39   42   44   47   50   53   55   58 
LCS_GDT     L     112     L     112      8   11   23     4    7    8    9   19   26   31   35   36   37   39   39   39   41   44   46   50   53   55   58 
LCS_GDT     A     113     A     113      8   11   23     4    7    8    9   11   13   16   18   20   27   30   33   38   39   43   44   46   50   54   57 
LCS_GDT     V     114     V     114      8   11   23     4    7    8    9   11   13   16   18   20   22   24   26   28   31   33   36   38   44   47   50 
LCS_GDT     Y     115     Y     115      8   11   23     4    7    8    9   11   13   16   18   20   22   24   26   28   31   33   36   38   44   47   50 
LCS_GDT     P     116     P     116      7   11   23     4    5    8    9   11   13   16   18   20   22   24   26   28   31   33   36   38   44   47   50 
LCS_GDT     T     117     T     117      6   11   23     4    5    6    9   10   12   16   18   20   22   24   26   28   31   33   36   38   44   47   50 
LCS_GDT     P     118     P     118      5   11   23     4    5    5    7    9   12   16   18   20   22   24   26   28   31   33   36   38   44   47   50 
LCS_GDT     E     119     E     119      5    9   23     4    5    5    7    8   12   15   18   20   22   24   26   28   31   33   36   38   44   47   50 
LCS_GDT     M     120     M     120      3    4   23     2    3    3    3    4    5   12   14   15   22   23   25   28   31   33   36   38   44   47   50 
LCS_GDT     K     121     K     121      3    4   23     0    2    3    3    4    5    5    5    6    7    8   15   24   27   30   36   38   44   47   50 
LCS_GDT     N     122     N     122      3    4   23     0    0    3    3    4    5    5    5    6    6   15   19   26   29   30   36   38   44   47   50 
LCS_AVERAGE  LCS_A:  17.29  (   8.85   14.86   28.16 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     12     17     20     24     27     32     33     35     36     37     39     39     40     43     45     48     50     53     55     58 
GDT PERCENT_CA  11.21  15.89  18.69  22.43  25.23  29.91  30.84  32.71  33.64  34.58  36.45  36.45  37.38  40.19  42.06  44.86  46.73  49.53  51.40  54.21
GDT RMS_LOCAL    0.23   0.51   0.91   1.23   1.52   1.86   1.93   2.14   2.27   2.43   2.74   2.74   3.45   3.82   4.10   4.50   4.77   5.18   5.40   5.69
GDT RMS_ALL_CA  14.52  14.82  14.15  14.27  14.39  14.71  14.75  14.86  14.83  14.80  14.72  14.72  14.83  15.11  14.98  15.07  14.76  14.79  14.72  14.79

#      Molecule1      Molecule2       DISTANCE
LGA    D      16      D      16         33.471
LGA    R      17      R      17         27.116
LGA    P      18      P      18         22.520
LGA    W      19      W      19         15.429
LGA    W      20      W      20         13.173
LGA    G      21      G      21          9.297
LGA    L      22      L      22         10.176
LGA    P      23      P      23         12.210
LGA    C      24      C      24         10.485
LGA    T      25      T      25         14.055
LGA    V      26      V      26         14.282
LGA    T      27      T      27         15.270
LGA    P      28      P      28         15.494
LGA    C      29      C      29         17.043
LGA    F      30      F      30         11.316
LGA    G      31      G      31         10.695
LGA    A      32      A      32         13.258
LGA    R      33      R      33         12.629
LGA    L      34      L      34         11.365
LGA    V      35      V      35         15.522
LGA    Q      36      Q      36         19.009
LGA    E      37      E      37         17.132
LGA    G      38      G      38         21.287
LGA    N      39      N      39         20.574
LGA    R      40      R      40         21.293
LGA    L      41      L      41         18.460
LGA    H      42      H      42         20.152
LGA    Y      43      Y      43         20.935
LGA    L      44      L      44         19.787
LGA    A      45      A      45         14.714
LGA    D      46      D      46         15.390
LGA    R      47      R      47         18.159
LGA    A      48      A      48         14.730
LGA    G      49      G      49         10.156
LGA    I      50      I      50          4.927
LGA    R      51      R      51          8.551
LGA    G      52      G      52          6.803
LGA    L      53      L      53          1.772
LGA    F      54      F      54          2.626
LGA    S      55      S      55          3.722
LGA    D      56      D      56          3.538
LGA    A      57      A      57          3.069
LGA    D      58      D      58          2.024
LGA    A      59      A      59          1.414
LGA    Y      60      Y      60          1.028
LGA    H      61      H      61          0.809
LGA    L      62      L      62          0.609
LGA    D      63      D      63          1.516
LGA    Q      64      Q      64          2.537
LGA    A      65      A      65          2.765
LGA    F      66      F      66          2.017
LGA    P      67      P      67          2.140
LGA    L      68      L      68          2.180
LGA    L      69      L      69          1.725
LGA    M      70      M      70          1.244
LGA    K      71      K      71          0.993
LGA    Q      72      Q      72          1.081
LGA    L      73      L      73          0.812
LGA    E      74      E      74          0.451
LGA    L      75      L      75          0.720
LGA    M      76      M      76          1.123
LGA    L      77      L      77          0.759
LGA    T      78      T      78          1.430
LGA    S      79      S      79          2.176
LGA    G      80      G      80          2.306
LGA    E      81      E      81          2.815
LGA    L      82      L      82          2.398
LGA    N      83      N      83          2.030
LGA    P      84      P      84          3.305
LGA    R      85      R      85          3.019
LGA    H      86      H      86          5.514
LGA    Q      87      Q      87          9.302
LGA    H      88      H      88         12.025
LGA    T      89      T      89         11.450
LGA    V      90      V      90         10.971
LGA    T      91      T      91         13.843
LGA    L      92      L      92         15.793
LGA    Y      93      Y      93         19.576
LGA    A      94      A      94         22.562
LGA    K      95      K      95         27.324
LGA    G      96      G      96         25.696
LGA    L      97      L      97         20.214
LGA    T      98      T      98         18.817
LGA    C      99      C      99         13.942
LGA    K     100      K     100         14.288
LGA    A     101      A     101          9.875
LGA    D     102      D     102         13.305
LGA    T     103      T     103         13.674
LGA    L     104      L     104         14.597
LGA    S     105      S     105         17.807
LGA    S     106      S     106         18.854
LGA    C     107      C     107         20.481
LGA    D     108      D     108         18.350
LGA    Y     109      Y     109         12.788
LGA    V     110      V     110          9.708
LGA    Y     111      Y     111          3.859
LGA    L     112      L     112          3.938
LGA    A     113      A     113          7.609
LGA    V     114      V     114         13.566
LGA    Y     115      Y     115         18.664
LGA    P     116      P     116         24.300
LGA    T     117      T     117         24.572
LGA    P     118      P     118         27.823
LGA    E     119      E     119         31.540
LGA    M     120      M     120         28.582
LGA    K     121      K     121         29.497
LGA    N     122      N     122         33.018

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  122  107    4.0     35    2.14    28.972    25.960     1.562

LGA_LOCAL      RMSD =  2.140  Number of atoms =   35  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 14.796  Number of atoms =  107 
Std_ALL_ATOMS  RMSD = 13.155  (standard rmsd on all 107 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.620157 * X  +  -0.200407 * Y  +   0.758448 * Z  +  42.644604
  Y_new =   0.228290 * X  +  -0.971079 * Y  +  -0.069927 * Z  +  25.813040
  Z_new =   0.750526 * X  +   0.129780 * Y  +   0.647972 * Z  +  42.016495 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   0.197671   -2.943922  [ DEG:    11.3257   -168.6743 ]
  Theta =  -0.848858   -2.292735  [ DEG:   -48.6360   -131.3640 ]
  Phi   =   2.788871   -0.352722  [ DEG:   159.7905    -20.2095 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0304TS599_1                                  
REMARK     2: T0304.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0304TS599_1.T0304.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  122  107   4.0   35   2.14  25.960    13.16
REMARK  ---------------------------------------------------------- 
MOLECULE T0304TS599_1
PFRMAT TS                                                                       
TARGET T0304                                                                    
MODEL  1                                                                        
PARENT N/A                                                                      
ATOM      1  CA  MET     1      30.233  26.098  32.244  1.00  0.00              
ATOM      2  CA  SER     2      27.433  28.401  31.140  1.00  0.00              
ATOM      3  CA  ASP     3      23.846  28.276  31.400  1.00  0.00              
ATOM      4  CA  THR     4      26.139  26.235  34.274  1.00  0.00              
ATOM      5  CA  LEU     5      26.569  29.434  36.214  1.00  0.00              
ATOM      6  CA  PRO     6      30.358  29.540  36.744  1.00  0.00              
ATOM      7  CA  GLY     7      30.889  33.237  36.034  1.00  0.00              
ATOM      8  CA  THR     8      32.750  34.111  39.246  1.00  0.00              
ATOM      9  CA  THR     9      35.301  36.644  38.057  1.00  0.00              
ATOM     10  CA  LEU    10      38.306  36.966  40.372  1.00  0.00              
ATOM     11  CA  PRO    11      38.876  40.312  41.989  1.00  0.00              
ATOM     12  CA  ASP    12      42.163  41.990  41.308  1.00  0.00              
ATOM     13  CA  ASP    13      43.042  42.784  44.955  1.00  0.00              
ATOM     14  CA  ASN    14      46.579  43.992  44.484  1.00  0.00              
ATOM     15  CA  HIS    15      48.461  41.156  46.264  1.00  0.00              
ATOM     16  CA  ASP    16      50.925  39.706  43.830  1.00  0.00              
ATOM     17  CA  ARG    17      48.711  37.567  41.654  1.00  0.00              
ATOM     18  CA  PRO    18      49.848  34.054  42.728  1.00  0.00              
ATOM     19  CA  TRP    19      46.698  32.159  41.889  1.00  0.00              
ATOM     20  CA  TRP    20      48.034  29.276  39.880  1.00  0.00              
ATOM     21  CA  GLY    21      45.695  28.525  37.174  1.00  0.00              
ATOM     22  CA  LEU    22      46.352  24.881  36.152  1.00  0.00              
ATOM     23  CA  PRO    23      43.393  23.219  34.550  1.00  0.00              
ATOM     24  CA  CYS    24      41.833  20.523  36.636  1.00  0.00              
ATOM     25  CA  THR    25      41.364  17.235  35.012  1.00  0.00              
ATOM     26  CA  VAL    26      39.483  14.649  37.094  1.00  0.00              
ATOM     27  CA  THR    27      40.809  11.032  37.157  1.00  0.00              
ATOM     28  CA  PRO    28      38.856   8.525  39.283  1.00  0.00              
ATOM     29  CA  CYS    29      41.585   7.558  41.750  1.00  0.00              
ATOM     30  CA  PHE    30      42.374  11.248  42.388  1.00  0.00              
ATOM     31  CA  GLY    31      38.792  12.569  42.635  1.00  0.00              
ATOM     32  CA  ALA    32      37.863  10.102  45.388  1.00  0.00              
ATOM     33  CA  ARG    33      41.020  11.184  47.220  1.00  0.00              
ATOM     34  CA  LEU    34      39.986  14.856  46.999  1.00  0.00              
ATOM     35  CA  VAL    35      36.483  14.096  48.364  1.00  0.00              
ATOM     36  CA  GLN    36      37.996  12.096  51.144  1.00  0.00              
ATOM     37  CA  GLU    37      40.508  14.825  52.147  1.00  0.00              
ATOM     38  CA  GLY    38      37.922  17.569  52.259  1.00  0.00              
ATOM     39  CA  ASN    39      39.078  19.614  49.315  1.00  0.00              
ATOM     40  CA  ARG    40      36.026  20.751  47.486  1.00  0.00              
ATOM     41  CA  LEU    41      36.240  20.749  43.721  1.00  0.00              
ATOM     42  CA  HIS    42      33.299  22.688  42.525  1.00  0.00              
ATOM     43  CA  TYR    43      30.606  23.631  40.128  1.00  0.00              
ATOM     44  CA  LEU    44      32.455  23.558  36.747  1.00  0.00              
ATOM     45  CA  ALA    45      34.083  20.259  37.822  1.00  0.00              
ATOM     46  CA  ASP    46      30.665  18.652  38.438  1.00  0.00              
ATOM     47  CA  ARG    47      29.194  19.650  35.086  1.00  0.00              
ATOM     48  CA  ALA    48      32.150  18.143  33.250  1.00  0.00              
ATOM     49  CA  GLY    49      32.107  14.849  35.142  1.00  0.00              
ATOM     50  CA  ILE    50      35.348  14.760  37.114  1.00  0.00              
ATOM     51  CA  ARG    51      36.824  11.475  36.010  1.00  0.00              
ATOM     52  CA  GLY    52      36.068  12.087  32.340  1.00  0.00              
ATOM     53  CA  LEU    53      36.944  15.649  31.687  1.00  0.00              
ATOM     54  CA  PHE    54      40.564  15.562  30.779  1.00  0.00              
ATOM     55  CA  SER    55      41.830  13.763  27.753  1.00  0.00              
ATOM     56  CA  ASP    56      45.041  11.936  28.654  1.00  0.00              
ATOM     57  CA  ALA    57      47.116  14.224  26.413  1.00  0.00              
ATOM     58  CA  ASP    58      45.780  17.328  28.160  1.00  0.00              
ATOM     59  CA  ALA    59      46.621  15.688  31.543  1.00  0.00              
ATOM     60  CA  TYR    60      50.252  15.324  30.358  1.00  0.00              
ATOM     61  CA  HIS    61      50.256  19.035  29.350  1.00  0.00              
ATOM     62  CA  LEU    62      48.754  20.072  32.708  1.00  0.00              
ATOM     63  CA  ASP    63      51.343  17.943  34.559  1.00  0.00              
ATOM     64  CA  GLN    64      54.096  19.869  32.830  1.00  0.00              
ATOM     65  CA  ALA    65      52.596  23.280  33.725  1.00  0.00              
ATOM     66  CA  PHE    66      51.960  22.348  37.315  1.00  0.00              
ATOM     67  CA  PRO    67      55.496  21.513  38.277  1.00  0.00              
ATOM     68  CA  LEU    68      56.594  25.023  37.153  1.00  0.00              
ATOM     69  CA  LEU    69      53.748  26.747  38.881  1.00  0.00              
ATOM     70  CA  MET    70      54.291  25.044  42.213  1.00  0.00              
ATOM     71  CA  LYS    71      57.979  25.859  42.158  1.00  0.00              
ATOM     72  CA  GLN    72      57.278  29.534  41.408  1.00  0.00              
ATOM     73  CA  LEU    73      54.705  29.673  44.170  1.00  0.00              
ATOM     74  CA  GLU    74      57.205  28.116  46.640  1.00  0.00              
ATOM     75  CA  LEU    75      59.888  30.639  45.698  1.00  0.00              
ATOM     76  CA  MET    76      57.367  33.468  46.258  1.00  0.00              
ATOM     77  CA  LEU    77      56.317  32.066  49.630  1.00  0.00              
ATOM     78  CA  THR    78      59.870  31.725  50.939  1.00  0.00              
ATOM     79  CA  SER    79      60.666  35.322  49.870  1.00  0.00              
ATOM     80  CA  GLY    80      57.733  37.060  51.453  1.00  0.00              
ATOM     81  CA  GLU    81      56.368  38.535  48.269  1.00  0.00              
ATOM     82  CA  LEU    82      52.919  37.143  48.681  1.00  0.00              
ATOM     83  CA  ASN    83      50.569  38.160  51.252  1.00  0.00              
ATOM     84  CA  PRO    84      48.876  37.125  54.348  1.00  0.00              
ATOM     85  CA  ARG    85      45.727  35.853  52.751  1.00  0.00              
ATOM     86  CA  HIS    86      47.592  33.658  50.195  1.00  0.00              
ATOM     87  CA  GLN    87      49.927  31.815  52.502  1.00  0.00              
ATOM     88  CA  HIS    88      49.246  28.300  51.414  1.00  0.00              
ATOM     89  CA  THR    89      45.439  28.422  50.928  1.00  0.00              
ATOM     90  CA  VAL    90      43.895  28.363  47.510  1.00  0.00              
ATOM     91  CA  THR    91      40.373  29.642  47.040  1.00  0.00              
ATOM     92  CA  LEU    92      38.376  28.547  44.194  1.00  0.00              
ATOM     93  CA  TYR    93      35.367  30.587  43.249  1.00  0.00              
ATOM     94  CA  ALA    94      32.522  28.947  41.285  1.00  0.00              
ATOM     95  CA  LYS    95      30.604  27.457  44.229  1.00  0.00              
ATOM     96  CA  GLY    96      33.107  27.659  47.009  1.00  0.00              
ATOM     97  CA  LEU    97      36.025  25.308  46.781  1.00  0.00              
ATOM     98  CA  THR    98      38.852  25.504  49.244  1.00  0.00              
ATOM     99  CA  CYS    99      42.201  24.070  48.419  1.00  0.00              
ATOM    100  CA  LYS   100      44.838  23.718  51.104  1.00  0.00              
ATOM    101  CA  ALA   101      48.377  24.362  49.825  1.00  0.00              
ATOM    102  CA  ASP   102      49.918  20.973  50.218  1.00  0.00              
ATOM    103  CA  THR   103      47.087  18.586  49.291  1.00  0.00              
ATOM    104  CA  LEU   104      46.005  20.296  46.069  1.00  0.00              
ATOM    105  CA  SER   105      49.609  20.509  44.877  1.00  0.00              
ATOM    106  CA  SER   106      50.458  16.864  45.527  1.00  0.00              
ATOM    107  CA  CYS   107      47.375  15.674  43.729  1.00  0.00              
ATOM    108  CA  ASP   108      47.533  17.676  40.565  1.00  0.00              
ATOM    109  CA  TYR   109      45.062  20.463  41.341  1.00  0.00              
ATOM    110  CA  VAL   110      45.055  24.043  40.011  1.00  0.00              
ATOM    111  CA  TYR   111      44.189  26.861  42.494  1.00  0.00              
ATOM    112  CA  LEU   112      42.118  29.847  41.573  1.00  0.00              
ATOM    113  CA  ALA   113      41.904  32.661  44.013  1.00  0.00              
ATOM    114  CA  VAL   114      38.736  34.702  44.230  1.00  0.00              
ATOM    115  CA  TYR   115      38.757  38.052  46.079  1.00  0.00              
ATOM    116  CA  PRO   116      35.540  39.610  47.266  1.00  0.00              
ATOM    117  CA  THR   117      35.091  43.110  45.983  1.00  0.00              
ATOM    118  CA  PRO   118      34.344  45.030  49.120  1.00  0.00              
ATOM    119  CA  GLU   119      31.109  46.760  47.978  1.00  0.00              
ATOM    120  CA  MET   120      29.649  43.174  46.349  1.00  0.00              
ATOM    121  CA  LYS   121      30.163  39.009  46.559  1.00  0.00              
ATOM    122  CA  ASN   122      27.831  40.815  48.751  1.00  0.00              
TER                                                                             
END
