
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  133 (  133),  selected  132 , name T0307TS168_3
# Molecule2: number of CA atoms  132 ( 1005),  selected  132 , name T0307.pdb
# PARAMETERS: T0307TS168_3.T0307.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    26         8 - 33          4.93    33.27
  LONGEST_CONTINUOUS_SEGMENT:    26       103 - 128         4.98    24.82
  LCS_AVERAGE:     17.89

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    19        14 - 32          1.79    28.72
  LONGEST_CONTINUOUS_SEGMENT:    19        15 - 33          1.73    29.09
  LCS_AVERAGE:     11.55

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    17        15 - 31          0.91    28.81
  LONGEST_CONTINUOUS_SEGMENT:    17        80 - 96          0.51    45.82
  LCS_AVERAGE:      9.22

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  132
LCS_GDT     M       1     M       1      0    9   13     0    3    6    8    9   10   10   11   12   14   15   18   20   21   23   25   26   27   28   28 
LCS_GDT     G       2     G       2      4    9   13     3    4    6    8    9   10   10   11   12   14   15   18   20   21   23   28   28   32   37   39 
LCS_GDT     L       3     L       3      4    9   13     3    4    4    5    9    9   10   11   12   15   18   21   23   23   24   28   30   32   38   39 
LCS_GDT     G       4     G       4      4    9   13     3    4    6    8    9   10   10   11   12   15   18   21   23   24   27   29   33   38   42   46 
LCS_GDT     R       5     R       5      4    9   13     3    4    4    8    9   10   10   12   13   14   19   22   23   29   31   33   35   38   42   46 
LCS_GDT     Q       6     Q       6      5    9   13     3    4    6    8    9   10   11   12   13   15   19   23   24   29   31   33   35   39   44   47 
LCS_GDT     S       7     S       7      5    9   15     3    4    6    8    9   15   16   18   19   23   24   24   27   31   32   36   38   42   46   47 
LCS_GDT     L       8     L       8      5    9   26     3    5    6   11   15   18   19   21   21   24   26   27   29   32   35   37   39   42   46   47 
LCS_GDT     N       9     N       9      5    9   26     1    5    6   11   16   18   19   21   21   24   26   28   29   32   35   37   39   42   46   47 
LCS_GDT     I      10     I      10      5    8   26     2    4    6    7    9   14   18   21   21   24   26   28   29   32   35   37   39   42   46   47 
LCS_GDT     M      11     M      11      5    8   26     3    4    6    7    9   10   12   15   19   23   26   28   29   32   35   37   39   42   46   47 
LCS_GDT     T      12     T      12      4    7   26     3    4    6    7    9   10   12   15   19   23   25   28   28   31   33   37   39   41   46   47 
LCS_GDT     F      13     F      13      3   18   26     3    3    5    7    9   11   15   20   20   23   25   28   28   31   33   37   39   41   46   47 
LCS_GDT     S      14     S      14      3   19   26     3    3    4    7   12   14   19   20   21   23   25   28   28   31   33   37   39   41   44   47 
LCS_GDT     G      15     G      15     17   19   26    15   16   16   17   18   19   20   20   21   23   25   28   28   32   35   37   39   42   46   47 
LCS_GDT     Q      16     Q      16     17   19   26    15   16   16   17   18   19   20   20   21   21   23   28   28   29   33   36   38   41   44   47 
LCS_GDT     E      17     E      17     17   19   26    15   16   16   17   18   19   20   20   21   21   25   28   29   32   35   37   39   42   46   47 
LCS_GDT     L      18     L      18     17   19   26    15   16   16   17   18   19   20   21   21   24   26   28   29   32   35   37   39   42   46   47 
LCS_GDT     T      19     T      19     17   19   26    15   16   16   17   18   19   20   20   21   23   25   28   29   32   35   36   39   42   46   47 
LCS_GDT     A      20     A      20     17   19   26    15   16   16   17   18   19   20   20   21   22   25   28   28   29   32   36   38   41   45   47 
LCS_GDT     I      21     I      21     17   19   26    15   16   16   17   18   19   20   20   21   23   25   28   29   31   34   36   39   42   46   47 
LCS_GDT     I      22     I      22     17   19   26    15   16   16   17   18   19   20   20   21   23   25   28   28   29   32   35   37   40   44   46 
LCS_GDT     K      23     K      23     17   19   26    15   16   16   17   18   19   20   20   21   23   25   28   28   29   30   30   31   33   36   38 
LCS_GDT     M      24     M      24     17   19   26    15   16   16   17   18   19   20   20   21   23   25   28   28   29   30   30   31   35   36   39 
LCS_GDT     A      25     A      25     17   19   26    15   16   16   17   18   19   20   20   21   23   25   28   28   29   30   30   32   35   38   42 
LCS_GDT     K      26     K      26     17   19   26    15   16   16   17   18   19   20   20   21   23   25   28   28   29   30   30   31   33   35   38 
LCS_GDT     S      27     S      27     17   19   26    15   16   16   17   18   19   20   20   21   23   25   28   28   29   30   30   31   33   35   38 
LCS_GDT     M      28     M      28     17   19   26    15   16   16   17   18   19   20   20   21   23   25   28   28   29   30   30   31   33   35   38 
LCS_GDT     V      29     V      29     17   19   26    15   16   16   17   18   19   20   20   21   23   25   28   28   29   30   30   30   31   32   33 
LCS_GDT     M      30     M      30     17   19   26     9   16   16   17   18   19   20   20   21   23   25   28   28   29   30   30   30   31   32   33 
LCS_GDT     A      31     A      31     17   19   26     0    3    3   11   18   19   20   20   21   23   25   28   28   29   30   30   30   31   32   33 
LCS_GDT     D      32     D      32      0   19   26     0    0    3    6   12   19   20   20   21   23   25   28   28   29   30   30   30   31   32   32 
LCS_GDT     G      33     G      33      4   19   26     0    4    4    6    6    7   17   19   20   21   23   23   25   27   29   30   30   31   32   32 
LCS_GDT     K      34     K      34      4    7   24     0    4    4    6    6    7    8    8    9   14   21   22   23   23   26   28   28   29   30   32 
LCS_GDT     I      35     I      35      4    7   24     1    4    4    6    6    7    8    9   10   14   18   18   19   20   21   22   23   24   25   30 
LCS_GDT     K      36     K      36      4   15   22     3    4    4    6    6   10   12   15   17   17   18   19   20   21   22   23   24   25   26   30 
LCS_GDT     P      37     P      37     15   16   22     9   12   15   15   15   15   16   16   17   17   18   19   19   21   22   23   24   25   26   26 
LCS_GDT     A      38     A      38     15   16   22     9   12   15   15   15   15   16   16   17   17   18   19   20   21   22   23   24   25   26   30 
LCS_GDT     E      39     E      39     15   16   22     9   12   15   15   15   15   16   16   17   17   18   19   20   21   22   23   24   25   26   26 
LCS_GDT     I      40     I      40     15   16   22     9   12   15   15   15   15   16   16   17   17   18   19   20   21   22   23   24   25   26   26 
LCS_GDT     A      41     A      41     15   16   22     9   12   15   15   15   15   16   16   17   17   18   19   20   21   22   23   24   25   26   30 
LCS_GDT     V      42     V      42     15   16   22     9   12   15   15   15   15   16   16   17   17   18   19   20   21   22   23   24   25   26   30 
LCS_GDT     M      43     M      43     15   16   22     9   12   15   15   15   15   16   16   17   17   18   19   20   21   22   23   24   25   26   30 
LCS_GDT     T      44     T      44     15   16   22     9   12   15   15   15   15   16   16   17   17   18   19   20   21   22   23   24   25   26   28 
LCS_GDT     R      45     R      45     15   16   22     9   12   15   15   15   15   16   16   17   17   18   19   20   21   22   23   24   25   27   31 
LCS_GDT     E      46     E      46     15   16   22     5   12   15   15   15   15   16   16   17   17   18   19   20   21   22   23   24   25   27   31 
LCS_GDT     F      47     F      47     15   16   22     9   12   15   15   15   15   16   16   17   17   18   19   20   21   22   23   24   25   26   30 
LCS_GDT     M      48     M      48     15   16   22     4   11   15   15   15   15   16   16   17   17   18   19   20   21   22   23   24   27   28   31 
LCS_GDT     R      49     R      49     15   16   22     4    5   15   15   15   15   16   16   17   17   18   19   20   21   22   24   25   27   28   31 
LCS_GDT     F      50     F      50     15   16   22     4   12   15   15   15   15   16   16   17   17   18   18   19   20   22   23   24   25   28   30 
LCS_GDT     G      51     G      51     15   16   22     4    4   15   15   15   15   16   16   17   17   18   18   19   20   21   22   23   30   32   34 
LCS_GDT     I      52     I      52      3   16   23     3    3    5   10   14   14   16   16   17   18   19   20   26   29   32   35   36   37   41   42 
LCS_GDT     L      53     L      53     13   16   23     5   10   13   15   16   16   16   17   19   21   22   24   26   29   32   35   36   38   41   42 
LCS_GDT     Q      54     Q      54     13   16   23     5   10   13   15   16   16   16   17   19   21   22   24   24   25   27   29   34   37   41   42 
LCS_GDT     D      55     D      55     13   16   23     5    9   13   15   16   16   16   18   19   21   22   24   24   25   26   28   34   37   41   42 
LCS_GDT     Q      56     Q      56     13   16   23     8   12   13   15   16   16   17   18   19   21   22   24   26   29   32   35   36   38   41   42 
LCS_GDT     V      57     V      57     13   16   23     8   12   13   15   16   16   17   18   19   23   24   24   26   29   32   35   36   39   41   43 
LCS_GDT     D      58     D      58     13   16   23     8   12   13   15   16   16   17   18   19   23   24   24   25   28   32   35   36   39   41   43 
LCS_GDT     L      59     L      59     13   16   23     8   12   13   15   16   16   17   18   19   23   24   24   25   28   30   35   36   39   41   45 
LCS_GDT     L      60     L      60     13   16   23     8   12   13   15   16   16   17   19   21   24   26   27   29   29   32   35   39   41   46   47 
LCS_GDT     L      61     L      61     13   16   23     8   12   13   15   16   16   17   18   21   24   26   27   29   29   32   35   39   41   46   47 
LCS_GDT     K      62     K      62     13   16   23     8   12   13   15   16   16   17   18   19   23   26   27   29   29   32   35   39   41   44   47 
LCS_GDT     A      63     A      63     13   16   23     8   12   13   15   16   16   17   18   19   24   26   28   29   29   32   34   39   41   46   47 
LCS_GDT     S      64     S      64     13   16   23     8   12   13   15   16   18   19   21   21   24   26   28   29   32   35   37   39   42   46   47 
LCS_GDT     D      65     D      65     13   16   23     3   12   13   15   16   18   19   21   21   24   26   28   29   32   35   37   39   42   46   47 
LCS_GDT     S      66     S      66     13   16   23     3   12   12   15   16   16   17   18   19   23   25   28   28   29   30   32   39   42   46   47 
LCS_GDT     I      67     I      67     13   16   23     3   12   12   15   16   16   17   18   19   21   23   24   27   31   35   37   39   42   46   47 
LCS_GDT     E      68     E      68     13   16   23    10   12   12   12   16   16   17   18   19   21   23   26   27   32   35   37   39   42   44   47 
LCS_GDT     A      69     A      69     12   14   23    10   12   12   12   13   13   14   17   18   21   23   26   28   32   35   37   39   42   46   47 
LCS_GDT     S      70     S      70     12   14   23    10   12   12   12   13   13   14   15   17   18   21   24   24   29   32   36   39   41   44   47 
LCS_GDT     Q      71     Q      71     12   14   23    10   12   12   12   13   13   17   18   19   21   22   24   24   29   31   33   35   38   42   46 
LCS_GDT     A      72     A      72     12   14   23    10   12   12   12   13   13   14   15   17   17   19   20   23   29   31   33   35   38   42   46 
LCS_GDT     V      73     V      73     12   14   23    10   12   12   12   13   13   14   15   17   17   19   20   23   29   31   33   35   38   42   46 
LCS_GDT     A      74     A      74     12   14   23    10   12   12   12   13   13   14   15   17   17   19   20   21   23   26   29   30   34   38   41 
LCS_GDT     L      75     L      75     12   14   24    10   12   12   12   13   13   14   15   17   17   19   20   20   22   22   25   26   32   37   39 
LCS_GDT     I      76     I      76     12   14   24    10   12   12   12   13   13   14   15   17   17   19   20   20   22   23   25   26   26   28   30 
LCS_GDT     A      77     A      77     12   14   24    10   12   12   12   13   13   14   15   17   17   19   21   21   22   23   25   26   26   28   30 
LCS_GDT     R      78     R      78     12   14   24    10   12   12   12   13   13   14   15   17   18   19   21   21   22   23   25   26   26   28   30 
LCS_GDT     M      79     M      79     12   18   24     5   12   12   12   13   13   17   18   19   19   19   21   21   22   23   25   26   26   28   29 
LCS_GDT     D      80     D      80     17   18   24     9   16   17   17   17   17   17   18   19   19   19   21   21   22   23   25   26   26   28   29 
LCS_GDT     E      81     E      81     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   21   22   23   25   26   26   28   29 
LCS_GDT     E      82     E      82     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   21   22   23   25   26   26   28   29 
LCS_GDT     R      83     R      83     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   21   22   23   25   26   26   28   29 
LCS_GDT     K      84     K      84     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   21   22   23   25   26   26   28   29 
LCS_GDT     K      85     K      85     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   21   22   23   24   26   26   28   29 
LCS_GDT     Y      86     Y      86     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   21   22   23   24   25   26   28   29 
LCS_GDT     V      87     V      87     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   21   22   23   24   25   26   28   29 
LCS_GDT     A      88     A      88     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   21   22   23   24   25   26   28   29 
LCS_GDT     S      89     S      89     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   21   22   23   24   25   26   28   29 
LCS_GDT     Y      90     Y      90     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   21   22   23   24   25   26   28   29 
LCS_GDT     L      91     L      91     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   21   22   23   24   25   26   28   29 
LCS_GDT     G      92     G      92     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   21   22   23   24   25   26   28   29 
LCS_GDT     V      93     V      93     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   21   22   23   24   25   26   28   29 
LCS_GDT     I      94     I      94     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   21   22   23   24   25   26   28   29 
LCS_GDT     M      95     M      95     17   18   24     4   14   17   17   17   17   17   18   19   19   19   21   21   22   23   24   25   26   28   29 
LCS_GDT     A      96     A      96     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   21   22   23   24   25   26   28   29 
LCS_GDT     S      97     S      97      3   18   24     0    3    3    3    6    6   14   18   19   19   19   21   21   22   23   24   25   26   28   29 
LCS_GDT     D      98     D      98      3    7   24     0    3    3    3    6    7    7    7    9   10   12   14   19   22   23   24   25   26   30   31 
LCS_GDT     G      99     G      99      4    7   24     0    4    6    6    6    7    7    8   11   12   15   18   19   21   22   24   25   28   33   35 
LCS_GDT     D     100     D     100      4    7   23     0    4    6    6    6    7    7    8   11   14   15   16   19   23   28   34   36   39   43   43 
LCS_GDT     I     101     I     101      4    7   20     1    4    6    6    6    7    7    8   13   14   15   17   21   25   28   34   36   39   46   47 
LCS_GDT     D     102     D     102      4   16   21     0    4    6   13   14   14   15   21   21   24   26   27   29   32   35   37   39   42   46   47 
LCS_GDT     D     103     D     103     14   16   26    12   13   13   14   16   18   19   21   21   24   26   27   29   32   35   37   39   42   46   47 
LCS_GDT     N     104     N     104     14   16   26    12   13   13   14   16   18   19   21   21   24   26   27   29   32   35   37   39   42   46   47 
LCS_GDT     E     105     E     105     14   16   26    12   13   13   14   16   18   19   21   21   24   26   27   29   32   35   37   39   42   46   47 
LCS_GDT     L     106     L     106     14   16   26    12   13   13   14   16   18   19   21   21   24   26   27   29   32   35   37   39   42   46   47 
LCS_GDT     A     107     A     107     14   16   26    12   13   13   14   16   18   19   21   21   24   26   27   29   32   35   37   39   42   46   47 
LCS_GDT     L     108     L     108     14   16   26    12   13   13   14   16   18   19   21   21   24   26   27   29   32   35   37   39   42   46   47 
LCS_GDT     W     109     W     109     14   16   26    12   13   13   14   16   18   19   21   21   24   26   27   29   32   35   37   39   42   46   47 
LCS_GDT     T     110     T     110     14   16   26    12   13   13   14   16   18   19   21   21   24   26   27   29   32   35   37   39   42   46   47 
LCS_GDT     L     111     L     111     14   16   26    12   13   13   14   16   18   19   21   21   24   26   27   29   32   35   37   39   42   46   47 
LCS_GDT     I     112     I     112     14   16   26    12   13   13   14   16   18   19   21   21   24   26   27   29   32   35   37   39   42   46   47 
LCS_GDT     S     113     S     113     14   16   26    12   13   13   14   16   18   19   21   21   24   26   27   29   32   35   37   39   42   46   47 
LCS_GDT     T     114     T     114     14   16   26    12   13   13   14   16   18   19   21   21   24   26   27   29   32   35   37   39   42   46   47 
LCS_GDT     L     115     L     115     14   16   26    10   13   13   14   16   18   19   21   21   24   26   27   29   32   35   37   39   42   46   47 
LCS_GDT     C     116     C     116     14   16   26     3    4    6   13   16   18   19   21   21   24   26   27   29   32   35   37   39   42   46   47 
LCS_GDT     G     117     G     117      5   16   26     3    4    6    6    9   15   16   19   20   22   25   26   28   32   35   37   39   42   46   47 
LCS_GDT     L     118     L     118      5    7   26     3    4    6   17   18   19   20   20   21   22   25   26   28   32   35   37   39   42   46   47 
LCS_GDT     P     119     P     119      5   14   26     3    4    7   14   17   18   20   20   21   22   25   26   28   32   35   37   39   42   46   47 
LCS_GDT     T     120     T     120     11   14   26     3    3    8   12   12   13   16   20   20   21   22   25   28   30   32   35   37   42   44   47 
LCS_GDT     M     121     M     121     12   14   26    10   11   11   12   12   13   14   15   17   21   25   26   28   30   32   35   37   42   44   47 
LCS_GDT     T     122     T     122     12   14   26    10   11   11   12   12   13   14   15   16   21   22   25   27   29   32   35   36   38   41   46 
LCS_GDT     V     123     V     123     12   14   26    10   11   11   12   12   13   14   15   16   21   22   25   28   29   32   35   36   38   40   46 
LCS_GDT     M     124     M     124     12   14   26    10   11   11   12   12   13   14   15   16   21   25   26   28   29   32   35   36   38   41   44 
LCS_GDT     E     125     E     125     12   14   26    10   11   11   12   12   13   14   15   16   21   25   26   28   29   32   35   36   42   44   47 
LCS_GDT     A     126     A     126     12   14   26    10   11   11   12   12   13   16   18   20   22   25   26   28   32   35   37   39   42   46   47 
LCS_GDT     I     127     I     127     12   14   26    10   11   11   12   12   13   14   18   20   22   25   26   28   32   35   37   39   42   46   47 
LCS_GDT     N     128     N     128     12   14   26    10   11   11   12   12   13   14   15   16   16   16   24   27   31   32   34   39   42   46   47 
LCS_GDT     N     129     N     129     12   14   20    10   11   11   12   12   13   14   15   16   16   20   20   26   31   32   36   39   41   46   47 
LCS_GDT     M     130     M     130     12   14   20    10   11   11   12   12   13   14   15   16   16   17   22   27   32   35   37   39   42   46   47 
LCS_GDT     K     131     K     131     12   14   20     3   11   11   12   12   13   14   15   16   16   20   24   27   32   35   37   39   42   46   47 
LCS_GDT     N     132     N     132     12   14   20     0    3    4   12   12   12   14   15   16   16   17   19   24   26   28   34   37   41   46   47 
LCS_AVERAGE  LCS_A:  12.89  (   9.22   11.55   17.89 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     15     16     17     17     18     19     20     21     21     24     26     28     29     32     35     37     39     42     46     47 
GDT PERCENT_CA  11.36  12.12  12.88  12.88  13.64  14.39  15.15  15.91  15.91  18.18  19.70  21.21  21.97  24.24  26.52  28.03  29.55  31.82  34.85  35.61
GDT RMS_LOCAL    0.29   0.33   0.51   0.51   0.98   1.30   1.50   2.35   1.92   3.16   3.44   4.33   3.87   4.84   5.13   5.29   5.50   6.09   6.51   6.44
GDT RMS_ALL_CA  28.68  28.63  45.82  45.82  28.74  28.95  28.91  25.20  28.67  24.61  24.57  32.67  24.65  26.14  26.16  26.62  26.70  25.97  25.36  26.07

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         41.874
LGA    G       2      G       2         36.444
LGA    L       3      L       3         31.900
LGA    G       4      G       4         26.533
LGA    R       5      R       5         19.378
LGA    Q       6      Q       6         14.182
LGA    S       7      S       7          9.310
LGA    L       8      L       8          3.860
LGA    N       9      N       9          1.718
LGA    I      10      I      10          3.492
LGA    M      11      M      11          5.262
LGA    T      12      T      12          8.834
LGA    F      13      F      13          9.279
LGA    S      14      S      14         10.904
LGA    G      15      G      15          8.708
LGA    Q      16      Q      16         10.357
LGA    E      17      E      17          5.690
LGA    L      18      L      18          2.047
LGA    T      19      T      19          7.188
LGA    A      20      A      20          9.043
LGA    I      21      I      21          7.526
LGA    I      22      I      22         11.075
LGA    K      23      K      23         15.196
LGA    M      24      M      24         15.677
LGA    A      25      A      25         17.788
LGA    K      26      K      26         21.400
LGA    S      27      S      27         23.979
LGA    M      28      M      28         24.807
LGA    V      29      V      29         28.344
LGA    M      30      M      30         31.627
LGA    A      31      A      31         35.188
LGA    D      32      D      32         42.390
LGA    G      33      G      33         45.268
LGA    K      34      K      34         50.700
LGA    I      35      I      35         53.454
LGA    K      36      K      36         57.969
LGA    P      37      P      37         58.740
LGA    A      38      A      38         57.999
LGA    E      39      E      39         54.001
LGA    I      40      I      40         50.015
LGA    A      41      A      41         49.672
LGA    V      42      V      42         47.438
LGA    M      43      M      43         43.080
LGA    T      44      T      44         40.765
LGA    R      45      R      45         40.902
LGA    E      46      E      46         38.139
LGA    F      47      F      47         34.337
LGA    M      48      M      48         33.613
LGA    R      49      R      49         31.793
LGA    F      50      F      50         27.861
LGA    G      51      G      51         28.221
LGA    I      52      I      52         24.478
LGA    L      53      L      53         22.910
LGA    Q      54      Q      54         24.647
LGA    D      55      D      55         24.061
LGA    Q      56      Q      56         17.861
LGA    V      57      V      57         15.834
LGA    D      58      D      58         16.571
LGA    L      59      L      59         14.230
LGA    L      60      L      60          8.505
LGA    L      61      L      61          8.492
LGA    K      62      K      62          9.544
LGA    A      63      A      63          7.275
LGA    S      64      S      64          1.205
LGA    D      65      D      65          2.569
LGA    S      66      S      66          8.100
LGA    I      67      I      67          8.512
LGA    E      68      E      68         10.191
LGA    A      69      A      69          7.818
LGA    S      70      S      70         11.017
LGA    Q      71      Q      71         15.792
LGA    A      72      A      72         15.636
LGA    V      73      V      73         15.811
LGA    A      74      A      74         20.113
LGA    L      75      L      75         23.217
LGA    I      76      I      76         23.427
LGA    A      77      A      77         23.935
LGA    R      78      R      78         28.875
LGA    M      79      M      79         31.581
LGA    D      80      D      80         34.447
LGA    E      81      E      81         31.490
LGA    E      82      E      82         33.466
LGA    R      83      R      83         34.814
LGA    K      84      K      84         32.231
LGA    K      85      K      85         30.915
LGA    Y      86      Y      86         33.363
LGA    V      87      V      87         33.648
LGA    A      88      A      88         30.774
LGA    S      89      S      89         31.168
LGA    Y      90      Y      90         33.619
LGA    L      91      L      91         32.414
LGA    G      92      G      92         30.285
LGA    V      93      V      93         31.778
LGA    I      94      I      94         33.493
LGA    M      95      M      95         30.719
LGA    A      96      A      96         30.367
LGA    S      97      S      97         25.209
LGA    D      98      D      98         22.377
LGA    G      99      G      99         20.617
LGA    D     100      D     100         14.245
LGA    I     101      I     101         10.477
LGA    D     102      D     102          3.963
LGA    D     103      D     103          1.444
LGA    N     104      N     104          2.704
LGA    E     105      E     105          2.270
LGA    L     106      L     106          0.667
LGA    A     107      A     107          1.518
LGA    L     108      L     108          2.083
LGA    W     109      W     109          1.676
LGA    T     110      T     110          1.364
LGA    L     111      L     111          1.821
LGA    I     112      I     112          1.859
LGA    S     113      S     113          1.964
LGA    T     114      T     114          2.283
LGA    L     115      L     115          1.764
LGA    C     116      C     116          3.614
LGA    G     117      G     117          7.436
LGA    L     118      L     118          9.773
LGA    P     119      P     119         11.548
LGA    T     120      T     120         13.576
LGA    M     121      M     121         13.218
LGA    T     122      T     122         17.112
LGA    V     123      V     123         16.814
LGA    M     124      M     124         16.623
LGA    E     125      E     125         13.365
LGA    A     126      A     126         10.160
LGA    I     127      I     127         10.809
LGA    N     128      N     128         10.873
LGA    N     129      N     129         10.452
LGA    M     130      M     130         10.289
LGA    K     131      K     131          9.543
LGA    N     132      N     132         11.049

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  133  132    4.0     21    2.35    17.235    15.483     0.856

LGA_LOCAL      RMSD =  2.353  Number of atoms =   21  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 25.198  Number of atoms =  132 
Std_ALL_ATOMS  RMSD = 22.998  (standard rmsd on all 132 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.037120 * X  +  -0.954627 * Y  +  -0.295481 * Z  +  23.272066
  Y_new =  -0.987434 * X  +   0.080491 * Y  +  -0.135998 * Z  +   8.370971
  Z_new =   0.153611 * X  +   0.286720 * Y  +  -0.945619 * Z  +  32.739017 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.847195   -0.294398  [ DEG:   163.1322    -16.8678 ]
  Theta =  -0.154222   -2.987371  [ DEG:    -8.8363   -171.1637 ]
  Phi   =  -1.608371    1.533221  [ DEG:   -92.1529     87.8471 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0307TS168_3                                  
REMARK     2: T0307.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0307TS168_3.T0307.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  133  132   4.0   21   2.35  15.483    23.00
REMARK  ---------------------------------------------------------- 
MOLECULE T0307TS168_3
PFRMAT TS
TARGET T0307
MODEL 3
PARENT N/A
ATOM      1  CA  MET     1      17.448  16.528  62.290  1.00 25.00           C
ATOM      2  CA  GLY     2      16.344  19.592  60.302  1.00 25.00           C
ATOM      3  CA  LEU     3      15.228  22.719  58.551  1.00 25.00           C
ATOM      4  CA  GLY     4      12.859  20.859  56.257  1.00 25.00           C
ATOM      5  CA  ARG     5      10.106  21.361  53.683  1.00 25.00           C
ATOM      6  CA  GLN     6       7.469  21.593  50.936  1.00 25.00           C
ATOM      7  CA  SER     7       4.966  21.541  48.094  1.00 25.00           C
ATOM      8  CA  LEU     8       4.216  19.522  44.959  1.00 25.00           C
ATOM      9  CA  ASN     9       3.981  17.656  41.693  1.00 25.00           C
ATOM     10  CA  ILE    10       4.987  16.384  38.272  1.00 25.00           C
ATOM     11  CA  MET    11       6.745  16.130  34.941  1.00 25.00           C
ATOM     12  CA  THR    12       9.273  18.202  32.927  1.00 25.00           C
ATOM     13  CA  PHE    13      12.422  16.451  31.544  1.00 25.00           C
ATOM     14  CA  SER    14      14.664  19.297  32.824  1.00 25.00           C
ATOM     15  CA  GLY    15      17.133  16.409  33.332  1.00 25.00           C
ATOM     16  CA  GLN    16      15.204  15.396  36.482  1.00 25.00           C
ATOM     17  CA  GLU    17      16.445  11.792  36.114  1.00 25.00           C
ATOM     18  CA  LEU    18      20.045  13.045  35.731  1.00 25.00           C
ATOM     19  CA  THR    19      19.653  15.203  38.871  1.00 25.00           C
ATOM     20  CA  ALA    20      18.291  12.189  40.802  1.00 25.00           C
ATOM     21  CA  ILE    21      21.256  10.068  39.630  1.00 25.00           C
ATOM     22  CA  ILE    22      23.689  12.807  40.745  1.00 25.00           C
ATOM     23  CA  LYS    23      21.979  12.966  44.169  1.00 25.00           C
ATOM     24  CA  MET    24      22.241   9.160  44.503  1.00 25.00           C
ATOM     25  CA  ALA    25      25.960   9.312  43.603  1.00 25.00           C
ATOM     26  CA  LYS    26      26.507  12.055  46.219  1.00 25.00           C
ATOM     27  CA  SER    27      24.698   9.939  48.849  1.00 25.00           C
ATOM     28  CA  MET    28      26.880   6.921  47.958  1.00 25.00           C
ATOM     29  CA  VAL    29      30.032   9.073  48.275  1.00 25.00           C
ATOM     30  CA  MET    30      28.856  10.333  51.696  1.00 25.00           C
ATOM     31  CA  ALA    31      31.078   9.648  54.679  1.00 25.00           C
ATOM     32  CA  ASP    32      32.912  10.776  57.823  1.00 25.00           C
ATOM     33  CA  GLY    33      34.925  12.053  60.818  1.00 25.00           C
ATOM     34  CA  LYS    34      36.826  13.498  63.772  1.00 25.00           C
ATOM     35  CA  ILE    35      38.476  14.945  66.925  1.00 25.00           C
ATOM     36  CA  LYS    36      39.841  17.667  69.226  1.00 25.00           C
ATOM     37  CA  PRO    37      40.304  21.153  70.669  1.00 25.00           C
ATOM     38  CA  ALA    38      36.640  21.704  69.698  1.00 25.00           C
ATOM     39  CA  GLU    39      37.702  24.241  67.033  1.00 25.00           C
ATOM     40  CA  ILE    40      40.265  21.753  65.651  1.00 25.00           C
ATOM     41  CA  ALA    41      37.581  19.025  65.518  1.00 25.00           C
ATOM     42  CA  VAL    42      35.219  21.404  63.667  1.00 25.00           C
ATOM     43  CA  MET    43      37.991  22.251  61.165  1.00 25.00           C
ATOM     44  CA  THR    44      38.659  18.521  60.606  1.00 25.00           C
ATOM     45  CA  ARG    45      34.923  17.914  60.024  1.00 25.00           C
ATOM     46  CA  GLU    46      34.821  20.799  57.507  1.00 25.00           C
ATOM     47  CA  PHE    47      37.862  19.348  55.685  1.00 25.00           C
ATOM     48  CA  MET    48      36.176  15.912  55.557  1.00 25.00           C
ATOM     49  CA  ARG    49      32.989  17.500  54.145  1.00 25.00           C
ATOM     50  CA  PHE    50      35.050  19.329  51.485  1.00 25.00           C
ATOM     51  CA  GLY    51      36.789  16.049  50.542  1.00 25.00           C
ATOM     52  CA  ILE    52      33.393  14.304  50.251  1.00 25.00           C
ATOM     53  CA  LEU    53      32.102  17.133  48.017  1.00 25.00           C
ATOM     54  CA  GLN    54      35.215  16.841  45.806  1.00 25.00           C
ATOM     55  CA  ASP    55      34.694  13.057  45.529  1.00 25.00           C
ATOM     56  CA  GLN    56      31.029  13.608  44.558  1.00 25.00           C
ATOM     57  CA  VAL    57      32.092  16.146  41.893  1.00 25.00           C
ATOM     58  CA  ASP    58      34.655  13.657  40.511  1.00 25.00           C
ATOM     59  CA  LEU    59      31.971  10.929  40.378  1.00 25.00           C
ATOM     60  CA  LEU    60      29.609  13.308  38.528  1.00 25.00           C
ATOM     61  CA  LEU    61      32.381  14.154  36.026  1.00 25.00           C
ATOM     62  CA  LYS    62      33.049  10.425  35.467  1.00 25.00           C
ATOM     63  CA  ALA    63      29.313   9.819  34.885  1.00 25.00           C
ATOM     64  CA  SER    64      29.212  12.703  32.368  1.00 25.00           C
ATOM     65  CA  ASP    65      32.252  11.252  30.546  1.00 25.00           C
ATOM     66  CA  SER    66      30.566   7.816  30.417  1.00 25.00           C
ATOM     67  CA  ILE    67      27.379   9.404  29.006  1.00 25.00           C
ATOM     68  CA  GLU    68      29.440  11.233  26.346  1.00 25.00           C
ATOM     69  CA  ALA    69      31.180   7.954  25.403  1.00 25.00           C
ATOM     70  CA  SER    70      27.783   6.208  25.113  1.00 25.00           C
ATOM     71  CA  GLN    71      26.492   9.038  22.877  1.00 25.00           C
ATOM     72  CA  ALA    72      29.605   8.745  20.666  1.00 25.00           C
ATOM     73  CA  VAL    73      29.084   4.961  20.390  1.00 25.00           C
ATOM     74  CA  ALA    74      25.420   5.512  19.419  1.00 25.00           C
ATOM     75  CA  LEU    75      26.483   8.049  16.754  1.00 25.00           C
ATOM     76  CA  ILE    76      29.046   5.562  15.373  1.00 25.00           C
ATOM     77  CA  ALA    77      26.361   2.833  15.239  1.00 25.00           C
ATOM     78  CA  ARG    78      23.999   5.213  13.389  1.00 25.00           C
ATOM     79  CA  MET    79      26.772   6.059  10.887  1.00 25.00           C
ATOM     80  CA  ASP    80      27.440   2.330  10.327  1.00 25.00           C
ATOM     81  CA  GLU    81      23.703   1.722   9.746  1.00 25.00           C
ATOM     82  CA  GLU    82      23.602   4.607   7.228  1.00 25.00           C
ATOM     83  CA  ARG    83      26.641   3.156   5.406  1.00 25.00           C
ATOM     84  CA  LYS    84      24.955  -0.281   5.278  1.00 25.00           C
ATOM     85  CA  LYS    85      21.770   1.309   3.866  1.00 25.00           C
ATOM     86  CA  TYR    86      23.831   3.138   1.207  1.00 25.00           C
ATOM     87  CA  VAL    87      25.570  -0.142   0.264  1.00 25.00           C
ATOM     88  CA  ALA    88      22.173  -1.887  -0.027  1.00 25.00           C
ATOM     89  CA  SER    89      20.882   0.942  -2.262  1.00 25.00           C
ATOM     90  CA  TYR    90      23.996   0.649  -4.473  1.00 25.00           C
ATOM     91  CA  LEU    91      23.473  -3.135  -4.749  1.00 25.00           C
ATOM     92  CA  GLY    92      19.810  -2.584  -5.720  1.00 25.00           C
ATOM     93  CA  VAL    93      20.872  -0.047  -8.386  1.00 25.00           C
ATOM     94  CA  ILE    94      23.435  -2.534  -9.767  1.00 25.00           C
ATOM     95  CA  MET    95      20.751  -5.264  -9.900  1.00 25.00           C
ATOM     96  CA  ALA    96      18.389  -2.883 -11.751  1.00 25.00           C
ATOM     97  CA  SER    97      16.547  -3.177  -8.490  1.00 25.00           C
ATOM     98  CA  ASP    98      15.854  -3.261  -4.788  1.00 25.00           C
ATOM     99  CA  GLY    99      15.994  -3.020  -0.993  1.00 25.00           C
ATOM    100  CA  ASP   100      16.093  -2.599   2.788  1.00 25.00           C
ATOM    101  CA  ILE   101      16.326  -2.538   6.536  1.00 25.00           C
ATOM    102  CA  ASP   102      16.963  -2.018  10.294  1.00 25.00           C
ATOM    103  CA  ASP   103      17.742  -1.640  14.024  1.00 25.00           C
ATOM    104  CA  ASN   104      20.197   0.846  15.590  1.00 25.00           C
ATOM    105  CA  GLU   105      17.396   2.270  17.780  1.00 25.00           C
ATOM    106  CA  LEU   106      16.435  -1.268  18.891  1.00 25.00           C
ATOM    107  CA  ALA   107      20.090  -2.017  19.753  1.00 25.00           C
ATOM    108  CA  LEU   108      20.302   1.224  21.782  1.00 25.00           C
ATOM    109  CA  TRP   109      17.093   0.293  23.653  1.00 25.00           C
ATOM    110  CA  THR   110      18.516  -3.181  24.413  1.00 25.00           C
ATOM    111  CA  LEU   111      21.751  -1.599  25.714  1.00 25.00           C
ATOM    112  CA  ILE   112      19.726   0.770  27.941  1.00 25.00           C
ATOM    113  CA  SER   113      17.714  -2.191  29.303  1.00 25.00           C
ATOM    114  CA  THR   114      20.959  -4.087  30.041  1.00 25.00           C
ATOM    115  CA  LEU   115      22.364  -1.023  31.860  1.00 25.00           C
ATOM    116  CA  CYS   116      22.439  -1.991  35.583  1.00 25.00           C
ATOM    117  CA  GLY   117      22.970  -4.900  37.931  1.00 25.00           C
ATOM    118  CA  LEU   118      20.039  -3.268  39.837  1.00 25.00           C
ATOM    119  CA  PRO   119      17.171  -5.812  39.957  1.00 25.00           C
ATOM    120  CA  THR   120      14.369  -3.470  40.800  1.00 25.00           C
ATOM    121  CA  MET   121      14.533  -2.168  37.184  1.00 25.00           C
ATOM    122  CA  THR   122      12.166   0.528  38.445  1.00 25.00           C
ATOM    123  CA  VAL   123       8.854   1.615  36.857  1.00 25.00           C
ATOM    124  CA  MET   124      10.379   5.006  35.937  1.00 25.00           C
ATOM    125  CA  GLU   125      13.399   3.248  34.368  1.00 25.00           C
ATOM    126  CA  ALA   126      11.062   0.977  32.357  1.00 25.00           C
ATOM    127  CA  ILE   127       9.092   4.030  31.149  1.00 25.00           C
ATOM    128  CA  ASN   128      12.351   5.750  30.103  1.00 25.00           C
ATOM    129  CA  ASN   129      13.426   2.606  28.198  1.00 25.00           C
ATOM    130  CA  MET   130      10.033   2.487  26.429  1.00 25.00           C
ATOM    131  CA  LYS   131       9.720   6.238  25.877  1.00 25.00           C
ATOM    132  CA  ASN   132      11.670   8.283  23.416  1.00 25.00           C
ATOM    133  CA  LEU   133      14.728   6.832  25.164  1.00 25.00           C
TER
END
