
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  123 (  123),  selected  123 , name T0307TS168_2-D1
# Molecule2: number of CA atoms  123 (  939),  selected  123 , name T0307_D1.pdb
# PARAMETERS: T0307TS168_2-D1.T0307_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    25        10 - 34          4.97    32.31
  LCS_AVERAGE:     18.57

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    19        13 - 31          1.95    25.60
  LONGEST_CONTINUOUS_SEGMENT:    19        14 - 32          1.63    25.87
  LONGEST_CONTINUOUS_SEGMENT:    19        15 - 33          1.78    26.13
  LCS_AVERAGE:     12.59

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    17        14 - 30          0.95    25.26
  LONGEST_CONTINUOUS_SEGMENT:    17        15 - 31          0.94    25.78
  LONGEST_CONTINUOUS_SEGMENT:    17        80 - 96          0.51    45.86
  LCS_AVERAGE:     10.29

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  123
LCS_GDT     I      10     I      10      3    5   25     0    3    4    4    8   15   17   19   20   21   24   26   26   29   33   35   36   39   40   43 
LCS_GDT     M      11     M      11      3    5   25     1    3    4    6   11   13   16   18   20   21   24   26   26   30   33   35   36   39   40   43 
LCS_GDT     T      12     T      12      3    6   25     2    3    4    6    8    9   11   15   19   21   24   25   26   30   32   34   36   39   40   42 
LCS_GDT     F      13     F      13      4   19   25     3    3    4    5    9   14   18   20   21   21   24   25   26   30   32   34   36   39   40   43 
LCS_GDT     S      14     S      14     17   19   25     3    3    4   11   17   17   19   20   21   22   23   24   26   30   32   34   34   38   40   42 
LCS_GDT     G      15     G      15     17   19   25    15   16   16   17   18   19   20   21   21   22   24   25   26   30   33   35   36   39   40   43 
LCS_GDT     Q      16     Q      16     17   19   25    15   16   16   17   18   19   20   21   21   22   23   24   25   27   29   32   36   39   40   43 
LCS_GDT     E      17     E      17     17   19   25    15   16   16   17   18   19   20   21   21   22   24   26   26   30   33   35   36   39   40   43 
LCS_GDT     L      18     L      18     17   19   25    15   16   16   17   18   19   20   21   21   22   24   26   27   30   33   35   36   39   40   43 
LCS_GDT     T      19     T      19     17   19   25    15   16   16   17   18   19   20   21   21   22   23   25   26   30   33   35   36   39   40   43 
LCS_GDT     A      20     A      20     17   19   25    15   16   16   17   18   19   20   21   21   22   23   24   26   30   32   35   36   39   39   43 
LCS_GDT     I      21     I      21     17   19   25    15   16   16   17   18   19   20   21   21   22   23   26   27   30   33   35   36   41   42   43 
LCS_GDT     I      22     I      22     17   19   25    15   16   16   17   18   19   20   21   21   22   23   24   26   30   32   35   38   41   42   43 
LCS_GDT     K      23     K      23     17   19   25    15   16   16   17   18   19   20   21   21   22   23   24   26   30   32   34   34   35   36   39 
LCS_GDT     M      24     M      24     17   19   25    15   16   16   17   18   19   20   21   21   22   23   24   26   30   32   34   34   35   36   39 
LCS_GDT     A      25     A      25     17   19   25    15   16   16   17   18   19   20   21   21   22   23   24   26   30   32   34   34   35   39   43 
LCS_GDT     K      26     K      26     17   19   25    15   16   16   17   18   19   20   21   21   22   23   24   26   30   32   34   34   35   36   39 
LCS_GDT     S      27     S      27     17   19   25    15   16   16   17   18   19   20   21   21   22   23   24   26   30   32   34   34   35   36   39 
LCS_GDT     M      28     M      28     17   19   25    15   16   16   17   18   19   20   21   21   22   23   24   26   30   32   34   34   35   36   39 
LCS_GDT     V      29     V      29     17   19   25    15   16   16   17   18   19   20   21   21   22   23   24   25   26   32   34   34   35   36   39 
LCS_GDT     M      30     M      30     17   19   25    11   16   16   17   18   19   20   21   21   22   23   24   25   27   32   34   34   35   36   39 
LCS_GDT     A      31     A      31     17   19   25     0    3    3    6   18   19   20   21   21   22   23   24   25   26   32   34   34   35   36   39 
LCS_GDT     D      32     D      32      0   19   25     0    0    3    6    8   19   20   21   21   22   23   24   25   26   27   28   28   30   30   31 
LCS_GDT     G      33     G      33      4   19   25     0    3    5    6    6    7   14   21   21   22   23   23   25   26   27   28   28   30   30   31 
LCS_GDT     K      34     K      34      4    7   25     0    3    5    6    6    7    8    8    9   13   20   23   23   24   24   27   27   27   29   31 
LCS_GDT     I      35     I      35      4    7   24     1    3    5    6    6    7    8    8    9   13   14   18   19   20   21   22   22   24   25   28 
LCS_GDT     K      36     K      36      4   15   22     3    3    5    6    6   11   12   15   17   17   18   18   19   20   21   22   22   23   24   28 
LCS_GDT     P      37     P      37     15   16   22     9   12   15   15   15   15   16   16   17   17   18   18   19   20   21   22   22   23   24   25 
LCS_GDT     A      38     A      38     15   16   22     9   12   15   15   15   15   16   16   17   17   18   18   19   20   21   22   22   23   24   28 
LCS_GDT     E      39     E      39     15   16   22     9   12   15   15   15   15   16   16   17   17   18   18   19   20   21   22   22   23   24   25 
LCS_GDT     I      40     I      40     15   16   22     9   12   15   15   15   15   16   16   17   17   18   18   19   20   21   22   22   23   24   25 
LCS_GDT     A      41     A      41     15   16   22     9   12   15   15   15   15   16   16   17   17   18   18   19   20   21   22   22   23   24   28 
LCS_GDT     V      42     V      42     15   16   22     9   12   15   15   15   15   16   16   17   17   18   18   19   20   21   22   22   23   24   28 
LCS_GDT     M      43     M      43     15   16   22     9   12   15   15   15   15   16   16   17   17   18   18   19   20   21   22   22   23   24   26 
LCS_GDT     T      44     T      44     15   16   22     9   12   15   15   15   15   16   16   17   17   18   18   19   20   21   22   22   23   24   25 
LCS_GDT     R      45     R      45     15   16   22     9   12   15   15   15   15   16   16   17   17   18   18   19   20   21   22   25   28   29   30 
LCS_GDT     E      46     E      46     15   16   22     5   12   15   15   15   15   16   16   17   17   18   18   19   20   21   22   25   28   29   30 
LCS_GDT     F      47     F      47     15   16   22     9   12   15   15   15   15   16   16   17   17   18   18   19   20   21   22   22   28   29   30 
LCS_GDT     M      48     M      48     15   16   22     4   11   15   15   15   15   16   16   17   17   18   18   19   20   21   22   25   28   29   30 
LCS_GDT     R      49     R      49     15   16   22     4    5   15   15   15   15   16   16   17   17   18   18   19   20   21   22   26   30   32   34 
LCS_GDT     F      50     F      50     15   16   22     4   12   15   15   15   15   16   16   17   17   18   18   19   20   21   22   22   23   29   30 
LCS_GDT     G      51     G      51     15   16   22     4    4   15   15   15   15   16   16   17   17   18   18   19   21   23   23   26   31   33   39 
LCS_GDT     I      52     I      52      3   16   23     3    3    5    9   14   15   16   16   17   17   20   22   24   29   32   35   38   41   42   43 
LCS_GDT     L      53     L      53     13   16   23     5   10   13   15   16   16   16   17   18   18   20   22   24   29   32   35   38   41   42   43 
LCS_GDT     Q      54     Q      54     13   16   23     5   10   13   15   16   16   16   17   18   18   19   21   24   29   32   35   38   41   42   43 
LCS_GDT     D      55     D      55     13   16   23     5    9   13   15   16   16   16   17   18   19   20   21   25   29   32   35   38   41   42   43 
LCS_GDT     Q      56     Q      56     13   16   23     8   12   13   15   16   16   16   17   18   19   20   22   25   29   32   35   38   41   42   43 
LCS_GDT     V      57     V      57     13   16   23     8   12   13   15   16   16   16   17   18   19   20   22   25   29   32   35   38   41   42   43 
LCS_GDT     D      58     D      58     13   16   23     8   12   13   15   16   16   16   17   18   19   20   21   25   29   32   35   38   41   42   43 
LCS_GDT     L      59     L      59     13   16   23     8   12   13   15   16   16   16   17   18   19   20   21   25   28   32   35   38   41   42   43 
LCS_GDT     L      60     L      60     13   16   23     8   12   13   15   16   16   16   17   18   19   22   26   26   30   32   35   38   41   42   43 
LCS_GDT     L      61     L      61     13   16   23     8   12   13   15   16   16   16   17   18   19   20   26   26   30   32   35   38   41   42   43 
LCS_GDT     K      62     K      62     13   16   23     8   12   13   15   16   16   16   17   18   18   22   26   26   29   32   35   38   41   42   43 
LCS_GDT     A      63     A      63     13   16   23     8   12   13   15   16   16   16   17   18   18   22   26   26   28   32   35   38   41   42   43 
LCS_GDT     S      64     S      64     13   16   23     8   12   13   15   16   16   17   19   20   21   24   26   27   29   33   35   38   41   42   43 
LCS_GDT     D      65     D      65     13   16   23     3   12   13   15   16   16   17   19   20   21   24   26   26   29   32   35   38   41   42   43 
LCS_GDT     S      66     S      66     13   16   23     3   12   12   15   16   16   16   17   18   18   19   20   22   22   23   28   38   41   42   43 
LCS_GDT     I      67     I      67     13   16   23     3   12   12   15   16   16   16   17   18   18   19   22   25   28   31   35   38   41   42   43 
LCS_GDT     E      68     E      68     13   16   23    10   12   12   12   16   16   16   17   18   19   21   24   27   29   33   35   38   41   42   43 
LCS_GDT     A      69     A      69     12   14   23    10   12   12   12   13   13   14   17   18   19   21   24   27   29   33   35   38   41   42   43 
LCS_GDT     S      70     S      70     12   14   23    10   12   12   12   13   13   14   15   17   19   21   23   26   29   32   35   38   41   42   43 
LCS_GDT     Q      71     Q      71     12   14   23    10   12   12   12   13   13   16   17   18   18   19   21   25   28   31   33   36   39   42   43 
LCS_GDT     A      72     A      72     12   14   23    10   12   12   12   13   13   14   15   17   17   19   20   24   28   31   33   36   39   42   43 
LCS_GDT     V      73     V      73     12   14   23    10   12   12   12   13   13   14   15   17   17   20   21   25   28   31   34   38   41   42   43 
LCS_GDT     A      74     A      74     12   14   23    10   12   12   12   13   13   14   15   17   17   19   19   23   28   31   32   33   36   39   41 
LCS_GDT     L      75     L      75     12   14   24    10   12   12   12   13   13   14   15   17   17   19   19   22   22   23   25   29   34   34   37 
LCS_GDT     I      76     I      76     12   14   24    10   12   12   12   13   13   14   15   17   17   19   19   22   22   24   25   27   27   32   35 
LCS_GDT     A      77     A      77     12   14   24    10   12   12   12   13   13   14   15   17   17   19   21   22   22   25   26   32   34   35   37 
LCS_GDT     R      78     R      78     12   14   24    10   12   12   12   13   13   14   15   17   18   19   21   22   22   24   25   27   29   33   35 
LCS_GDT     M      79     M      79     12   18   24     5   12   12   12   13   13   17   18   19   19   19   21   22   22   24   25   27   27   28   29 
LCS_GDT     D      80     D      80     17   18   24     9   16   17   17   17   17   17   18   19   19   19   21   22   22   24   25   27   27   28   30 
LCS_GDT     E      81     E      81     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   22   22   24   25   27   27   28   29 
LCS_GDT     E      82     E      82     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   22   22   24   25   27   27   28   29 
LCS_GDT     R      83     R      83     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   22   22   24   25   27   27   28   29 
LCS_GDT     K      84     K      84     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   21   22   24   25   27   27   28   29 
LCS_GDT     K      85     K      85     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   21   22   24   25   27   27   28   29 
LCS_GDT     Y      86     Y      86     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   21   22   24   24   25   26   28   29 
LCS_GDT     V      87     V      87     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   21   22   24   24   25   26   28   29 
LCS_GDT     A      88     A      88     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   21   22   24   24   25   26   28   29 
LCS_GDT     S      89     S      89     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   21   22   24   24   25   26   28   29 
LCS_GDT     Y      90     Y      90     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   21   22   24   24   25   26   28   29 
LCS_GDT     L      91     L      91     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   21   22   24   24   25   26   28   29 
LCS_GDT     G      92     G      92     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   21   22   24   24   25   26   28   29 
LCS_GDT     V      93     V      93     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   21   22   24   24   25   26   28   29 
LCS_GDT     I      94     I      94     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   21   22   24   24   25   26   28   29 
LCS_GDT     M      95     M      95     17   18   24     4   14   17   17   17   17   17   18   19   19   19   21   21   22   24   24   25   26   28   29 
LCS_GDT     A      96     A      96     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   21   22   24   24   25   26   28   29 
LCS_GDT     S      97     S      97      3   18   24     0    3    3    4    6    8   14   18   19   19   19   21   21   22   24   24   25   26   28   29 
LCS_GDT     D      98     D      98      3    7   24     0    3    3    4    6    7    7    7    9   10   12   17   20   22   24   24   25   26   28   35 
LCS_GDT     G      99     G      99      4    7   24     0    3    6    6    6    7    7    8   10   11   13   17   20   21   24   24   25   27   32   35 
LCS_GDT     D     100     D     100      4    7   23     0    3    6    6    6    7    8    9   11   14   16   16   16   20   25   29   31   37   38   42 
LCS_GDT     I     101     I     101      4    7   19     1    3    6    6    6    7    8    9   13   14   16   16   17   20   28   31   33   37   39   42 
LCS_GDT     D     102     D     102      4   16   19     0    3    6   12   14   14   16   19   20   21   24   26   26   29   33   35   36   39   40   43 
LCS_GDT     D     103     D     103     14   16   19    12   13   13   13   14   15   17   19   20   21   24   26   26   29   33   35   36   39   40   43 
LCS_GDT     N     104     N     104     14   16   19    12   13   13   13   14   15   17   19   20   21   24   26   27   29   33   35   36   39   40   43 
LCS_GDT     E     105     E     105     14   16   19    12   13   13   13   14   15   17   19   20   21   24   26   27   29   33   35   36   39   40   43 
LCS_GDT     L     106     L     106     14   16   21    12   13   13   13   14   15   17   19   20   21   24   26   27   29   33   35   36   39   40   43 
LCS_GDT     A     107     A     107     14   16   21    12   13   13   13   14   15   17   19   20   21   24   26   27   29   33   35   36   39   40   43 
LCS_GDT     L     108     L     108     14   16   21    12   13   13   13   14   15   17   19   20   21   24   26   27   29   33   35   38   41   42   43 
LCS_GDT     W     109     W     109     14   16   21    12   13   13   13   14   15   17   19   20   21   24   26   27   29   33   35   38   41   42   43 
LCS_GDT     T     110     T     110     14   16   21    12   13   13   13   14   15   17   19   20   21   24   26   27   29   33   35   38   41   42   43 
LCS_GDT     L     111     L     111     14   16   21    12   13   13   13   14   15   17   19   20   21   24   26   27   29   33   35   38   41   42   43 
LCS_GDT     I     112     I     112     14   16   21    12   13   13   13   14   15   17   19   20   21   24   26   27   29   33   35   38   41   42   43 
LCS_GDT     S     113     S     113     14   16   21    12   13   13   13   14   15   17   19   20   21   24   26   27   29   33   35   38   41   42   43 
LCS_GDT     T     114     T     114     14   16   21    12   13   13   13   14   15   17   19   20   21   24   26   27   29   33   35   38   41   42   43 
LCS_GDT     L     115     L     115     14   16   21    12   13   13   13   14   15   17   19   20   21   24   26   27   29   33   35   38   41   42   43 
LCS_GDT     C     116     C     116     14   16   21     3    4    4   11   14   15   17   19   20   21   24   26   27   29   33   35   38   41   42   43 
LCS_GDT     G     117     G     117      4   16   21     3    4    4    6    8   17   20   21   21   22   22   24   27   29   33   35   38   41   42   43 
LCS_GDT     L     118     L     118      4    6   21     3    4   16   17   18   19   20   21   21   22   23   24   27   29   33   35   38   41   42   43 
LCS_GDT     P     119     P     119      4    8   21     3    4    4    6    8    9   20   20   21   22   23   24   27   29   32   35   38   41   42   43 
LCS_GDT     T     120     T     120      3   13   21     3    3    7   11   16   17   19   20   21   22   23   23   26   29   32   35   38   41   42   43 
LCS_GDT     M     121     M     121     11   13   21     3    4   11   11   12   12   13   20   21   21   21   24   27   29   32   35   38   41   42   43 
LCS_GDT     T     122     T     122     11   13   21     8   10   11   11   12   12   13   14   15   18   20   23   26   30   32   35   38   41   42   43 
LCS_GDT     V     123     V     123     11   13   21     8   10   11   11   12   12   13   14   15   19   21   24   27   30   32   35   38   41   42   43 
LCS_GDT     M     124     M     124     11   13   21     8   10   11   11   12   12   13   14   15   19   21   24   27   30   32   35   38   41   42   43 
LCS_GDT     E     125     E     125     11   13   21     8   10   11   11   12   12   13   14   15   16   21   24   27   30   32   34   38   41   42   43 
LCS_GDT     A     126     A     126     11   13   21     8   10   11   11   12   12   13   14   15   19   21   24   27   30   33   35   38   41   42   43 
LCS_GDT     I     127     I     127     11   13   21     8   10   11   11   12   12   13   14   15   19   21   24   27   30   33   35   36   39   40   43 
LCS_GDT     N     128     N     128     11   13   20     8   10   11   11   12   12   13   14   15   18   20   24   26   30   33   35   36   39   40   43 
LCS_GDT     N     129     N     129     11   13   20     8   10   11   11   12   12   13   14   15   16   18   24   26   30   33   35   36   39   40   43 
LCS_GDT     M     130     M     130     11   13   20     8   10   11   11   12   12   13   14   15   16   18   24   26   30   33   35   36   39   40   43 
LCS_GDT     K     131     K     131     11   13   20     8   10   11   11   12   12   13   14   15   16   18   24   26   30   33   35   36   39   40   43 
LCS_GDT     N     132     N     132     11   13   20     3    3    3   11   12   12   13   14   15   16   18   24   26   30   32   34   34   37   39   42 
LCS_AVERAGE  LCS_A:  13.82  (  10.29   12.59   18.57 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     15     16     17     17     18     19     20     21     21     22     24     26     27     30     33     35     38     41     42     43 
GDT PERCENT_CA  12.20  13.01  13.82  13.82  14.63  15.45  16.26  17.07  17.07  17.89  19.51  21.14  21.95  24.39  26.83  28.46  30.89  33.33  34.15  34.96
GDT RMS_LOCAL    0.29   0.33   0.51   0.51   1.06   1.33   1.56   2.07   1.87   2.21   3.42   4.00   4.84   7.56   5.41   5.51   5.81   6.13   6.28   6.40
GDT RMS_ALL_CA  25.56  25.50  45.86  45.86  25.88  26.11  26.39  26.14  26.21  26.19  25.96  24.60  26.03  26.82  26.28  25.48  25.45  25.30  25.29  25.25

#      Molecule1      Molecule2       DISTANCE
LGA    I      10      I      10         27.257
LGA    M      11      M      11         22.110
LGA    T      12      T      12         17.338
LGA    F      13      F      13         11.310
LGA    S      14      S      14          6.969
LGA    G      15      G      15          2.095
LGA    Q      16      Q      16          2.694
LGA    E      17      E      17          3.147
LGA    L      18      L      18          2.538
LGA    T      19      T      19          1.966
LGA    A      20      A      20          2.705
LGA    I      21      I      21          3.017
LGA    I      22      I      22          2.459
LGA    K      23      K      23          1.878
LGA    M      24      M      24          2.658
LGA    A      25      A      25          2.967
LGA    K      26      K      26          2.217
LGA    S      27      S      27          1.995
LGA    M      28      M      28          2.913
LGA    V      29      V      29          3.105
LGA    M      30      M      30          2.686
LGA    A      31      A      31          2.329
LGA    D      32      D      32          2.553
LGA    G      33      G      33          3.990
LGA    K      34      K      34          6.946
LGA    I      35      I      35         12.861
LGA    K      36      K      36         17.750
LGA    P      37      P      37         21.733
LGA    A      38      A      38         23.647
LGA    E      39      E      39         22.872
LGA    I      40      I      40         21.177
LGA    A      41      A      41         22.472
LGA    V      42      V      42         23.229
LGA    M      43      M      43         21.339
LGA    T      44      T      44         21.637
LGA    R      45      R      45         22.580
LGA    E      46      E      46         22.060
LGA    F      47      F      47         21.287
LGA    M      48      M      48         23.063
LGA    R      49      R      49         22.990
LGA    F      50      F      50         22.017
LGA    G      51      G      51         23.776
LGA    I      52      I      52         21.439
LGA    L      53      L      53         18.924
LGA    Q      54      Q      54         15.856
LGA    D      55      D      55         19.763
LGA    Q      56      Q      56         15.971
LGA    V      57      V      57         10.192
LGA    D      58      D      58         15.053
LGA    L      59      L      59         17.022
LGA    L      60      L      60         10.989
LGA    L      61      L      61         13.193
LGA    K      62      K      62         19.416
LGA    A      63      A      63         16.971
LGA    S      64      S      64         16.247
LGA    D      65      D      65         23.308
LGA    S      66      S      66         24.846
LGA    I      67      I      67         21.771
LGA    E      68      E      68         26.387
LGA    A      69      A      69         25.904
LGA    S      70      S      70         25.182
LGA    Q      71      Q      71         24.929
LGA    A      72      A      72         25.195
LGA    V      73      V      73         25.023
LGA    A      74      A      74         24.350
LGA    L      75      L      75         24.461
LGA    I      76      I      76         24.571
LGA    A      77      A      77         24.588
LGA    R      78      R      78         24.004
LGA    M      79      M      79         23.925
LGA    D      80      D      80         21.067
LGA    E      81      E      81         21.621
LGA    E      82      E      82         22.363
LGA    R      83      R      83         25.811
LGA    K      84      K      84         29.164
LGA    K      85      K      85         30.608
LGA    Y      86      Y      86         32.384
LGA    V      87      V      87         36.615
LGA    A      88      A      88         39.321
LGA    S      89      S      89         40.841
LGA    Y      90      Y      90         43.582
LGA    L      91      L      91         47.781
LGA    G      92      G      92         49.908
LGA    V      93      V      93         51.727
LGA    I      94      I      94         55.399
LGA    M      95      M      95         59.689
LGA    A      96      A      96         60.664
LGA    S      97      S      97         61.002
LGA    D      98      D      98         57.327
LGA    G      99      G      99         51.357
LGA    D     100      D     100         50.495
LGA    I     101      I     101         47.285
LGA    D     102      D     102         46.952
LGA    D     103      D     103         43.369
LGA    N     104      N     104         41.306
LGA    E     105      E     105         37.722
LGA    L     106      L     106         35.363
LGA    A     107      A     107         33.576
LGA    L     108      L     108         30.576
LGA    W     109      W     109         27.234
LGA    T     110      T     110         25.289
LGA    L     111      L     111         23.775
LGA    I     112      I     112         19.846
LGA    S     113      S     113         17.048
LGA    T     114      T     114         15.508
LGA    L     115      L     115         13.988
LGA    C     116      C     116          7.420
LGA    G     117      G     117          2.826
LGA    L     118      L     118          3.896
LGA    P     119      P     119          8.934
LGA    T     120      T     120         13.668
LGA    M     121      M     121         17.010
LGA    T     122      T     122         23.812
LGA    V     123      V     123         27.877
LGA    M     124      M     124         31.951
LGA    E     125      E     125         26.154
LGA    A     126      A     126         23.630
LGA    I     127      I     127         30.316
LGA    N     128      N     128         29.905
LGA    N     129      N     129         23.042
LGA    M     130      M     130         25.508
LGA    K     131      K     131         30.323
LGA    N     132      N     132         26.976

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  123  123    4.0     21    2.07    18.089    16.284     0.967

LGA_LOCAL      RMSD =  2.071  Number of atoms =   21  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 26.834  Number of atoms =  123 
Std_ALL_ATOMS  RMSD = 22.299  (standard rmsd on all 123 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.546382 * X  +   0.485531 * Y  +  -0.682442 * Z  +  15.696783
  Y_new =  -0.729173 * X  +   0.676624 * Y  +  -0.102404 * Z  +  10.889049
  Z_new =   0.412036 * X  +   0.553570 * Y  +   0.723731 * Z  +  36.727131 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   0.652958   -2.488634  [ DEG:    37.4118   -142.5882 ]
  Theta =  -0.424687   -2.716905  [ DEG:   -24.3328   -155.6672 ]
  Phi   =  -0.927733    2.213860  [ DEG:   -53.1552    126.8448 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0307TS168_2-D1                               
REMARK     2: T0307_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0307TS168_2-D1.T0307_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  123  123   4.0   21   2.07  16.284    22.30
REMARK  ---------------------------------------------------------- 
MOLECULE T0307TS168_2-D1
PFRMAT TS
TARGET T0307
MODEL 2
PARENT N/A
ATOM     10  CA  ILE    10      32.772  11.134  48.750  1.00 25.00           C
ATOM     11  CA  MET    11      29.520  13.050  49.056  1.00 25.00           C
ATOM     12  CA  THR    12      28.566  16.679  48.644  1.00 25.00           C
ATOM     13  CA  PHE    13      25.115  15.731  47.257  1.00 25.00           C
ATOM     14  CA  SER    14      25.387  18.654  44.752  1.00 25.00           C
ATOM     15  CA  GLY    15      23.937  17.831  41.290  1.00 25.00           C
ATOM     16  CA  GLN    16      26.341  14.851  41.365  1.00 25.00           C
ATOM     17  CA  GLU    17      23.418  12.447  40.774  1.00 25.00           C
ATOM     18  CA  LEU    18      22.232  14.577  37.820  1.00 25.00           C
ATOM     19  CA  THR    19      25.770  14.554  36.352  1.00 25.00           C
ATOM     20  CA  ALA    20      25.930  10.747  36.732  1.00 25.00           C
ATOM     21  CA  ILE    21      22.540  10.406  34.983  1.00 25.00           C
ATOM     22  CA  ILE    22      23.759  12.645  32.126  1.00 25.00           C
ATOM     23  CA  LYS    23      26.929  10.523  31.783  1.00 25.00           C
ATOM     24  CA  MET    24      24.812   7.334  31.675  1.00 25.00           C
ATOM     25  CA  ALA    25      22.581   8.878  28.971  1.00 25.00           C
ATOM     26  CA  LYS    26      25.677   9.844  26.934  1.00 25.00           C
ATOM     27  CA  SER    27      27.034   6.279  27.261  1.00 25.00           C
ATOM     28  CA  MET    28      23.670   4.864  26.101  1.00 25.00           C
ATOM     29  CA  VAL    29      23.683   7.235  23.092  1.00 25.00           C
ATOM     30  CA  MET    30      27.246   6.140  22.214  1.00 25.00           C
ATOM     31  CA  ALA    31      28.317   4.761  18.801  1.00 25.00           C
ATOM     32  CA  ASP    32      30.227   4.391  15.556  1.00 25.00           C
ATOM     33  CA  GLY    33      32.249   4.329  12.328  1.00 25.00           C
ATOM     34  CA  LYS    34      33.853   4.681   8.870  1.00 25.00           C
ATOM     35  CA  ILE    35      35.812   4.980   5.629  1.00 25.00           C
ATOM     36  CA  LYS    36      37.911   6.059   2.599  1.00 25.00           C
ATOM     37  CA  PRO    37      39.962   8.525   0.528  1.00 25.00           C
ATOM     38  CA  ALA    38      41.405   9.544   3.926  1.00 25.00           C
ATOM     39  CA  GLU    39      39.527  12.877   3.751  1.00 25.00           C
ATOM     40  CA  ILE    40      36.278  11.031   2.912  1.00 25.00           C
ATOM     41  CA  ALA    41      36.826   8.669   5.877  1.00 25.00           C
ATOM     42  CA  VAL    42      37.426  11.666   8.186  1.00 25.00           C
ATOM     43  CA  MET    43      34.212  13.317   6.918  1.00 25.00           C
ATOM     44  CA  THR    44      32.269  10.078   7.549  1.00 25.00           C
ATOM     45  CA  ARG    45      33.700   9.882  11.096  1.00 25.00           C
ATOM     46  CA  GLU    46      32.687  13.519  11.732  1.00 25.00           C
ATOM     47  CA  PHE    47      29.149  12.783  10.463  1.00 25.00           C
ATOM     48  CA  MET    48      28.932   9.731  12.766  1.00 25.00           C
ATOM     49  CA  ARG    49      30.087  11.859  15.734  1.00 25.00           C
ATOM     50  CA  PHE    50      27.444  14.502  14.899  1.00 25.00           C
ATOM     51  CA  GLY    51      24.750  11.787  14.719  1.00 25.00           C
ATOM     52  CA  ILE    52      25.869  10.417  18.116  1.00 25.00           C
ATOM     53  CA  LEU    53      25.717  13.938  19.614  1.00 25.00           C
ATOM     54  CA  GLN    54      22.191  14.416  18.196  1.00 25.00           C
ATOM     55  CA  ASP    55      21.110  11.060  19.690  1.00 25.00           C
ATOM     56  CA  GLN    56      22.553  12.078  23.088  1.00 25.00           C
ATOM     57  CA  VAL    57      20.675  15.412  22.913  1.00 25.00           C
ATOM     58  CA  ASP    58      17.426  13.566  22.074  1.00 25.00           C
ATOM     59  CA  LEU    59      17.973  11.204  25.039  1.00 25.00           C
ATOM     60  CA  LEU    60      18.574  14.201  27.346  1.00 25.00           C
ATOM     61  CA  LEU    61      15.359  15.852  26.079  1.00 25.00           C
ATOM     62  CA  LYS    62      13.417  12.613  26.710  1.00 25.00           C
ATOM     63  CA  ALA    63      14.847  12.417  30.258  1.00 25.00           C
ATOM     64  CA  SER    64      13.835  16.054  30.892  1.00 25.00           C
ATOM     65  CA  ASP    65      10.297  15.317  29.624  1.00 25.00           C
ATOM     66  CA  SER    66      10.081  12.266  31.928  1.00 25.00           C
ATOM     67  CA  ILE    67      11.235  14.394  34.896  1.00 25.00           C
ATOM     68  CA  GLU    68       8.592  17.037  34.059  1.00 25.00           C
ATOM     69  CA  ALA    69       5.897  14.322  33.881  1.00 25.00           C
ATOM     70  CA  SER    70       7.017  12.952  37.278  1.00 25.00           C
ATOM     71  CA  GLN    71       6.864  16.474  38.775  1.00 25.00           C
ATOM     72  CA  ALA    72       3.339  16.950  37.357  1.00 25.00           C
ATOM     73  CA  VAL    73       2.258  13.594  38.851  1.00 25.00           C
ATOM     74  CA  ALA    74       3.700  14.613  42.249  1.00 25.00           C
ATOM     75  CA  LEU    75       1.822  17.946  42.074  1.00 25.00           C
ATOM     76  CA  ILE    76      -1.427  16.100  41.235  1.00 25.00           C
ATOM     77  CA  ALA    77      -0.879  13.738  44.201  1.00 25.00           C
ATOM     78  CA  ARG    78      -0.278  16.736  46.508  1.00 25.00           C
ATOM     79  CA  MET    79      -3.494  18.387  45.240  1.00 25.00           C
ATOM     80  CA  ASP    80      -5.435  15.147  45.872  1.00 25.00           C
ATOM     81  CA  GLU    81      -4.005  14.951  49.419  1.00 25.00           C
ATOM     82  CA  GLU    82      -5.018  18.590  50.054  1.00 25.00           C
ATOM     83  CA  ARG    83      -8.555  17.852  48.785  1.00 25.00           C
ATOM     84  CA  LYS    84      -8.772  14.801  51.089  1.00 25.00           C
ATOM     85  CA  LYS    85      -7.618  16.929  54.057  1.00 25.00           C
ATOM     86  CA  TYR    86     -10.261  19.572  53.220  1.00 25.00           C
ATOM     87  CA  VAL    87     -12.955  16.857  53.042  1.00 25.00           C
ATOM     88  CA  ALA    88     -11.835  15.487  56.439  1.00 25.00           C
ATOM     89  CA  SER    89     -11.988  19.009  57.937  1.00 25.00           C
ATOM     90  CA  TYR    90     -15.514  19.485  56.519  1.00 25.00           C
ATOM     91  CA  LEU    91     -16.595  16.128  58.012  1.00 25.00           C
ATOM     92  CA  GLY    92     -15.152  17.148  61.411  1.00 25.00           C
ATOM     93  CA  VAL    93     -17.030  20.481  61.235  1.00 25.00           C
ATOM     94  CA  ILE    94     -20.280  18.635  60.397  1.00 25.00           C
ATOM     95  CA  MET    95     -19.732  16.273  63.362  1.00 25.00           C
ATOM     96  CA  ALA    96     -19.131  19.271  65.669  1.00 25.00           C
ATOM     97  CA  SER    97     -15.518  18.103  65.838  1.00 25.00           C
ATOM     98  CA  ASP    98     -12.374  16.760  64.281  1.00 25.00           C
ATOM     99  CA  GLY    99      -9.543  15.431  62.182  1.00 25.00           C
ATOM    100  CA  ASP   100      -6.814  13.893  60.021  1.00 25.00           C
ATOM    101  CA  ILE   101      -4.170  12.772  57.525  1.00 25.00           C
ATOM    102  CA  ASP   102      -1.542  11.582  55.119  1.00 25.00           C
ATOM    103  CA  ASP   103       1.148  10.476  52.603  1.00 25.00           C
ATOM    104  CA  ASN   104       2.455  12.448  49.592  1.00 25.00           C
ATOM    105  CA  GLU   105       6.058  11.904  50.769  1.00 25.00           C
ATOM    106  CA  LEU   106       5.394   8.152  51.150  1.00 25.00           C
ATOM    107  CA  ALA   107       3.915   8.031  47.619  1.00 25.00           C
ATOM    108  CA  LEU   108       6.987   9.857  46.242  1.00 25.00           C
ATOM    109  CA  TRP   109       9.294   7.376  48.029  1.00 25.00           C
ATOM    110  CA  THR   110       7.314   4.443  46.563  1.00 25.00           C
ATOM    111  CA  LEU   111       7.589   5.975  43.063  1.00 25.00           C
ATOM    112  CA  ILE   112      11.367   6.407  43.523  1.00 25.00           C
ATOM    113  CA  SER   113      11.673   2.757  44.641  1.00 25.00           C
ATOM    114  CA  THR   114       9.683   1.624  41.572  1.00 25.00           C
ATOM    115  CA  LEU   115      11.961   3.699  39.298  1.00 25.00           C
ATOM    116  CA  CYS   116      14.017   1.060  37.433  1.00 25.00           C
ATOM    117  CA  GLY   117      14.387  -1.959  35.076  1.00 25.00           C
ATOM    118  CA  LEU   118      17.891  -0.643  34.583  1.00 25.00           C
ATOM    119  CA  PRO   119      19.032  -4.320  34.314  1.00 25.00           C
ATOM    120  CA  THR   120      19.725  -3.920  38.066  1.00 25.00           C
ATOM    121  CA  MET   121      17.314  -1.874  40.076  1.00 25.00           C
ATOM    122  CA  THR   122      20.459  -0.945  42.087  1.00 25.00           C
ATOM    123  CA  VAL   123      19.352  -1.807  45.650  1.00 25.00           C
ATOM    124  CA  MET   124      22.074   0.479  47.075  1.00 25.00           C
ATOM    125  CA  GLU   125      20.938   3.314  44.764  1.00 25.00           C
ATOM    126  CA  ALA   126      17.312   2.811  45.889  1.00 25.00           C
ATOM    127  CA  ILE   127      18.409   2.917  49.557  1.00 25.00           C
ATOM    128  CA  ASN   128      20.355   6.151  48.906  1.00 25.00           C
ATOM    129  CA  ASN   129      17.283   7.688  47.211  1.00 25.00           C
ATOM    130  CA  MET   130      15.106   6.688  50.198  1.00 25.00           C
ATOM    131  CA  LYS   131      17.567   8.891  52.081  1.00 25.00           C
ATOM    132  CA  ASN   132      15.065  11.757  52.137  1.00 25.00           C
TER
END
