
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  123 (  123),  selected  123 , name T0307TS168_4-D1
# Molecule2: number of CA atoms  123 (  939),  selected  123 , name T0307_D1.pdb
# PARAMETERS: T0307TS168_4-D1.T0307_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    25        10 - 34          4.52    31.34
  LONGEST_CONTINUOUS_SEGMENT:    25       103 - 127         5.00    25.55
  LCS_AVERAGE:     19.30

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    20        13 - 32          1.99    26.25
  LCS_AVERAGE:     12.88

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    17        15 - 31          0.95    26.19
  LONGEST_CONTINUOUS_SEGMENT:    17        80 - 96          0.51    45.72
  LCS_AVERAGE:     10.32

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  123
LCS_GDT     I      10     I      10      5    5   25     3    5    5    6   13   13   14   15   17   20   23   25   26   28   31   33   36   39   43   45 
LCS_GDT     M      11     M      11      5    5   25     3    5    5    7   13   13   15   19   22   23   24   25   28   30   31   33   36   39   43   45 
LCS_GDT     T      12     T      12      5    5   25     3    5    5    7   13   13   15   19   22   23   24   25   28   30   31   35   36   39   43   45 
LCS_GDT     F      13     F      13      5   20   25     3    5    5    7   13   17   19   20   22   23   24   25   28   30   31   35   36   39   43   45 
LCS_GDT     S      14     S      14      5   20   25     3    5    5    8   15   18   19   20   22   23   24   25   28   30   31   35   36   39   43   45 
LCS_GDT     G      15     G      15     17   20   25    15   16   17   17   17   19   19   20   22   23   24   25   28   30   31   35   36   39   43   45 
LCS_GDT     Q      16     Q      16     17   20   25    15   16   17   17   17   19   19   20   21   23   24   25   26   30   31   35   36   39   43   45 
LCS_GDT     E      17     E      17     17   20   25    15   16   17   17   17   19   19   20   22   23   24   25   28   30   31   35   36   39   43   45 
LCS_GDT     L      18     L      18     17   20   25    15   16   17   17   17   19   19   20   22   23   24   25   28   30   31   35   36   39   43   45 
LCS_GDT     T      19     T      19     17   20   25    15   16   17   17   17   19   19   20   22   23   24   25   28   30   31   35   36   38   43   45 
LCS_GDT     A      20     A      20     17   20   25    15   16   17   17   17   19   19   20   22   23   24   25   28   30   31   35   36   36   40   44 
LCS_GDT     I      21     I      21     17   20   25    15   16   17   17   17   19   19   20   22   23   24   25   28   30   31   35   36   40   43   45 
LCS_GDT     I      22     I      22     17   20   25    15   16   17   17   17   19   19   20   22   23   24   25   28   30   34   35   37   40   42   44 
LCS_GDT     K      23     K      23     17   20   25    15   16   17   17   17   19   19   20   22   23   24   25   28   30   31   35   36   36   38   39 
LCS_GDT     M      24     M      24     17   20   25    15   16   17   17   17   19   19   20   22   23   24   25   28   30   31   35   36   36   38   39 
LCS_GDT     A      25     A      25     17   20   25    15   16   17   17   17   19   19   20   22   23   24   25   28   30   31   35   36   39   40   42 
LCS_GDT     K      26     K      26     17   20   25    15   16   17   17   17   19   19   20   22   23   24   25   28   30   31   35   36   36   38   39 
LCS_GDT     S      27     S      27     17   20   25    15   16   17   17   17   19   19   20   22   23   24   25   28   30   31   35   36   36   38   39 
LCS_GDT     M      28     M      28     17   20   25    15   16   17   17   17   19   19   20   22   23   24   25   28   30   31   35   36   36   38   39 
LCS_GDT     V      29     V      29     17   20   25    15   16   17   17   17   19   19   20   22   23   24   25   26   27   30   35   36   36   38   39 
LCS_GDT     M      30     M      30     17   20   25    10   16   17   17   17   19   19   20   22   23   24   25   26   27   30   35   36   36   38   39 
LCS_GDT     A      31     A      31     17   20   25     0    3    3    6   17   19   19   20   22   23   24   25   26   27   30   35   36   36   38   39 
LCS_GDT     D      32     D      32      0   20   25     0    0    3    6   12   19   19   20   22   23   24   25   26   27   29   29   29   30   31   33 
LCS_GDT     G      33     G      33      3   19   25     0    3    4    6    6    7   18   20   21   23   24   25   26   27   29   29   29   30   31   33 
LCS_GDT     K      34     K      34      3    7   25     0    3    4    6    6    7    8    8    9   14   22   23   24   25   25   28   29   30   31   32 
LCS_GDT     I      35     I      35      3    7   24     1    3    4    6    6    7    8    8    9   13   15   18   19   20   21   22   23   25   25   30 
LCS_GDT     K      36     K      36      3   15   22     3    3    4    6    6   11   12   15   17   17   18   18   19   20   21   22   23   23   25   30 
LCS_GDT     P      37     P      37     15   16   22     9   12   15   15   15   15   16   16   17   17   18   18   19   20   21   22   22   23   24   26 
LCS_GDT     A      38     A      38     15   16   22     9   12   15   15   15   15   16   16   17   17   18   18   19   20   21   22   23   23   25   30 
LCS_GDT     E      39     E      39     15   16   22     9   12   15   15   15   15   16   16   17   17   18   18   19   20   21   22   23   23   24   25 
LCS_GDT     I      40     I      40     15   16   22     9   12   15   15   15   15   16   16   17   17   18   18   19   20   21   22   23   23   24   26 
LCS_GDT     A      41     A      41     15   16   22     9   12   15   15   15   15   16   16   17   17   18   18   19   20   21   22   23   23   25   30 
LCS_GDT     V      42     V      42     15   16   22     9   12   15   15   15   15   16   16   17   17   18   18   19   20   21   22   23   23   25   30 
LCS_GDT     M      43     M      43     15   16   22     9   12   15   15   15   15   16   16   17   17   18   18   19   20   21   22   23   23   25   30 
LCS_GDT     T      44     T      44     15   16   22     9   12   15   15   15   15   16   16   17   17   18   18   19   20   21   22   23   23   25   29 
LCS_GDT     R      45     R      45     15   16   22     9   12   15   15   15   15   16   16   17   17   18   18   19   20   21   22   24   25   27   30 
LCS_GDT     E      46     E      46     15   16   22     5   12   15   15   15   15   16   16   17   17   18   18   19   20   21   22   24   25   27   30 
LCS_GDT     F      47     F      47     15   16   22     9   12   15   15   15   15   16   16   17   17   18   18   19   20   21   22   24   25   27   30 
LCS_GDT     M      48     M      48     15   16   22     4   11   15   15   15   15   16   16   17   17   18   18   19   20   22   25   28   32   35   39 
LCS_GDT     R      49     R      49     15   16   22     4    5   15   15   15   15   16   16   17   17   18   18   19   20   22   24   28   32   35   39 
LCS_GDT     F      50     F      50     15   16   22     4   12   15   15   15   15   16   16   17   17   18   18   19   20   22   24   25   27   28   30 
LCS_GDT     G      51     G      51     15   16   22     4    4   15   15   15   15   16   16   17   17   18   20   20   22   24   26   29   32   38   40 
LCS_GDT     I      52     I      52      3   16   23     3    3    5    9   14   15   16   16   17   20   24   26   27   30   34   35   37   40   42   44 
LCS_GDT     L      53     L      53     13   16   23     5   10   13   15   16   16   16   18   18   20   24   26   27   30   34   35   37   40   42   44 
LCS_GDT     Q      54     Q      54     13   16   23     5   10   13   15   16   16   16   18   18   20   24   26   27   30   34   35   37   39   41   44 
LCS_GDT     D      55     D      55     13   16   23     5    9   13   15   16   16   16   18   18   19   20   24   27   30   34   35   37   39   41   44 
LCS_GDT     Q      56     Q      56     13   16   23     8   12   13   15   16   16   16   18   18   20   24   26   27   30   34   35   37   40   42   44 
LCS_GDT     V      57     V      57     13   16   23     8   12   13   15   16   16   16   18   18   20   24   26   27   30   34   35   37   40   42   44 
LCS_GDT     D      58     D      58     13   16   23     8   12   13   15   16   16   16   18   18   19   23   26   27   30   34   35   37   40   42   44 
LCS_GDT     L      59     L      59     13   16   23     8   12   13   15   16   16   16   18   18   19   20   21   25   30   34   35   37   40   42   44 
LCS_GDT     L      60     L      60     13   16   23     8   12   13   15   16   16   16   18   18   20   24   26   28   30   34   35   37   40   42   44 
LCS_GDT     L      61     L      61     13   16   23     8   12   13   15   16   16   16   18   22   23   24   26   28   30   34   35   37   40   42   44 
LCS_GDT     K      62     K      62     13   16   23     8   12   13   15   16   16   16   18   21   23   24   25   28   30   34   35   37   40   42   44 
LCS_GDT     A      63     A      63     13   16   23     8   12   13   15   16   16   16   18   18   19   20   21   25   26   33   35   37   40   42   44 
LCS_GDT     S      64     S      64     13   16   23     8   12   13   15   16   16   16   18   18   20   24   26   27   30   34   35   37   40   43   45 
LCS_GDT     D      65     D      65     13   16   23     3   12   13   15   16   16   16   18   18   20   24   26   27   30   34   35   37   40   43   45 
LCS_GDT     S      66     S      66     13   16   23     3   12   12   15   16   16   16   18   18   19   20   21   24   26   27   34   37   39   42   44 
LCS_GDT     I      67     I      67     13   16   23     3   12   12   15   16   16   16   18   18   19   20   21   23   29   33   34   37   39   43   45 
LCS_GDT     E      68     E      68     13   16   23    10   12   12   12   16   16   16   18   18   20   24   26   27   30   34   35   37   40   43   45 
LCS_GDT     A      69     A      69     12   14   23    10   12   12   12   13   13   14   17   18   20   24   26   27   30   34   35   37   40   43   45 
LCS_GDT     S      70     S      70     12   14   23    10   12   12   12   13   13   14   15   17   20   24   26   27   30   34   35   37   40   43   45 
LCS_GDT     Q      71     Q      71     12   14   23    10   12   12   12   13   13   16   17   18   19   20   21   23   26   32   33   37   39   41   42 
LCS_GDT     A      72     A      72     12   14   23    10   12   12   12   13   13   14   15   17   17   19   21   23   25   29   32   36   39   41   42 
LCS_GDT     V      73     V      73     12   14   23    10   12   12   12   13   13   14   15   17   17   19   20   23   26   30   33   37   39   41   44 
LCS_GDT     A      74     A      74     12   14   23    10   12   12   12   13   13   14   15   17   18   19   21   23   25   28   31   36   39   40   42 
LCS_GDT     L      75     L      75     12   14   23    10   12   12   12   13   13   14   15   17   17   19   19   21   22   23   25   27   30   34   38 
LCS_GDT     I      76     I      76     12   14   24    10   12   12   12   13   13   14   15   17   17   19   19   21   22   23   25   25   28   29   33 
LCS_GDT     A      77     A      77     12   14   24    10   12   12   12   13   13   14   15   17   17   19   21   21   22   23   26   29   31   34   38 
LCS_GDT     R      78     R      78     12   14   24    10   12   12   12   13   13   14   15   17   18   19   21   21   22   23   25   25   28   31   33 
LCS_GDT     M      79     M      79     12   18   24     5   12   12   12   13   13   17   18   19   19   19   21   21   22   23   25   25   27   28   29 
LCS_GDT     D      80     D      80     17   18   24     9   16   17   17   17   17   17   18   19   19   19   21   21   22   23   25   25   27   28   29 
LCS_GDT     E      81     E      81     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   21   22   23   25   25   27   28   29 
LCS_GDT     E      82     E      82     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   21   22   23   25   25   27   28   29 
LCS_GDT     R      83     R      83     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   21   22   23   25   25   27   28   29 
LCS_GDT     K      84     K      84     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   21   21   23   25   25   27   28   29 
LCS_GDT     K      85     K      85     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   21   21   23   24   25   27   28   29 
LCS_GDT     Y      86     Y      86     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   21   21   23   24   25   25   28   29 
LCS_GDT     V      87     V      87     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   21   21   23   24   25   25   28   29 
LCS_GDT     A      88     A      88     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   21   21   23   24   25   25   28   29 
LCS_GDT     S      89     S      89     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   21   21   23   24   25   25   28   29 
LCS_GDT     Y      90     Y      90     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   21   21   23   24   25   25   28   29 
LCS_GDT     L      91     L      91     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   21   21   23   24   25   25   28   29 
LCS_GDT     G      92     G      92     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   21   21   23   24   25   25   28   29 
LCS_GDT     V      93     V      93     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   21   21   23   24   25   25   28   29 
LCS_GDT     I      94     I      94     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   21   21   23   24   25   25   28   29 
LCS_GDT     M      95     M      95     17   18   24     4   15   17   17   17   17   17   18   19   19   19   21   21   21   23   24   25   25   28   29 
LCS_GDT     A      96     A      96     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   21   21   23   24   25   25   28   29 
LCS_GDT     S      97     S      97      3   18   24     0    3    3    5    6    6   13   18   19   19   19   21   21   21   23   24   25   25   28   29 
LCS_GDT     D      98     D      98      3    7   24     0    2    3    5    6    7    7    7   10   10   13   16   20   21   23   24   25   25   31   36 
LCS_GDT     G      99     G      99      4    7   24     0    3    6    6    6    7    7    8   10   12   17   17   20   21   22   24   25   30   33   36 
LCS_GDT     D     100     D     100      4    7   23     0    3    6    6    6    7    7    8   10   14   15   16   18   19   25   32   34   37   38   41 
LCS_GDT     I     101     I     101      4    7   19     1    3    6    6    6    7    7    8   12   14   15   17   20   25   28   32   34   37   40   44 
LCS_GDT     D     102     D     102      4   16   20     0    3    6   13   14   16   16   17   19   20   21   23   26   28   31   33   36   39   43   45 
LCS_GDT     D     103     D     103     14   16   25    12   13   13   14   15   16   16   17   19   20   20   24   26   28   31   33   36   39   43   45 
LCS_GDT     N     104     N     104     14   16   25    12   13   13   14   15   16   16   17   19   20   22   24   26   28   31   33   36   39   43   45 
LCS_GDT     E     105     E     105     14   16   25    12   13   13   14   15   16   16   17   19   20   22   24   27   28   31   34   36   40   43   45 
LCS_GDT     L     106     L     106     14   16   25    12   13   13   14   15   16   16   17   19   20   22   24   26   28   31   33   36   40   43   45 
LCS_GDT     A     107     A     107     14   16   25    12   13   13   14   15   16   16   17   19   20   22   24   27   28   31   34   36   40   43   45 
LCS_GDT     L     108     L     108     14   16   25    12   13   13   14   15   16   16   17   19   20   22   24   27   28   34   35   37   40   43   45 
LCS_GDT     W     109     W     109     14   16   25    12   13   13   14   15   16   16   17   19   20   22   24   27   28   34   35   37   40   43   45 
LCS_GDT     T     110     T     110     14   16   25    12   13   13   14   15   16   16   17   19   20   22   24   27   30   34   35   37   40   43   45 
LCS_GDT     L     111     L     111     14   16   25    12   13   13   14   15   16   16   17   19   20   24   26   27   30   34   35   37   40   43   45 
LCS_GDT     I     112     I     112     14   16   25    12   13   13   14   15   16   16   17   19   20   24   26   27   30   34   35   37   40   43   45 
LCS_GDT     S     113     S     113     14   16   25    12   13   13   14   15   16   16   17   19   20   24   26   27   30   34   35   37   40   43   45 
LCS_GDT     T     114     T     114     14   16   25    12   13   13   14   15   16   16   17   19   20   24   26   27   30   34   35   37   40   43   45 
LCS_GDT     L     115     L     115     14   16   25    10   13   13   14   15   16   16   17   19   20   24   26   27   30   34   35   37   40   43   45 
LCS_GDT     C     116     C     116     14   16   25     3    4    8   14   15   16   16   17   19   20   24   26   27   30   34   35   37   40   43   45 
LCS_GDT     G     117     G     117      4   16   25     3    4    7   14   15   16   16   17   20   20   24   26   27   30   34   35   37   40   43   45 
LCS_GDT     L     118     L     118      4   12   25     3    4    5    6    9   15   17   19   21   21   24   26   27   30   34   35   37   40   43   45 
LCS_GDT     P     119     P     119      4   14   25     3    4    6   15   17   19   19   20   21   21   24   26   27   30   34   35   37   40   43   45 
LCS_GDT     T     120     T     120      5   14   25     3   16   17   17   17   18   19   20   21   21   24   26   27   30   34   35   37   40   43   45 
LCS_GDT     M     121     M     121     12   14   25     3    4   11   12   12   13   14   20   21   21   24   26   27   30   34   35   37   40   43   45 
LCS_GDT     T     122     T     122     12   14   25     8   10   11   12   12   13   14   15   16   20   24   26   27   30   34   35   37   40   42   44 
LCS_GDT     V     123     V     123     12   14   25     9   10   11   12   12   13   14   16   19   19   23   26   28   30   34   35   37   40   42   44 
LCS_GDT     M     124     M     124     12   14   25     9   10   11   12   12   13   14   15   16   18   22   24   27   30   34   35   37   40   42   44 
LCS_GDT     E     125     E     125     12   14   25     9   10   11   12   12   13   14   15   16   16   21   24   26   28   31   35   36   40   42   45 
LCS_GDT     A     126     A     126     12   14   25     9   10   11   12   12   13   14   16   19   20   22   25   28   30   31   35   36   40   43   45 
LCS_GDT     I     127     I     127     12   14   25     9   10   11   12   12   13   14   16   19   20   22   25   28   30   31   35   36   40   43   45 
LCS_GDT     N     128     N     128     12   14   24     9   10   11   12   12   13   14   15   16   17   20   25   28   30   31   35   36   39   43   45 
LCS_GDT     N     129     N     129     12   14   20     9   10   11   12   12   13   14   15   16   16   22   25   28   30   31   35   36   39   43   45 
LCS_GDT     M     130     M     130     12   14   20     9   10   11   12   12   13   14   16   19   19   22   25   28   30   31   35   36   39   43   45 
LCS_GDT     K     131     K     131     12   14   20     9   10   11   12   12   13   14   16   19   19   22   25   28   30   31   35   36   39   43   45 
LCS_GDT     N     132     N     132     12   14   20     0    3    3   11   12   13   14   15   19   19   22   25   28   30   31   35   36   37   40   45 
LCS_AVERAGE  LCS_A:  14.17  (  10.32   12.88   19.30 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     15     16     17     17     17     19     19     20     22     23     24     26     28     30     34     35     37     40     43     45 
GDT PERCENT_CA  12.20  13.01  13.82  13.82  13.82  15.45  15.45  16.26  17.89  18.70  19.51  21.14  22.76  24.39  27.64  28.46  30.08  32.52  34.96  36.59
GDT RMS_LOCAL    0.29   0.32   0.51   0.51   0.51   1.49   1.49   1.67   3.05   3.12   3.30   4.23   4.39   4.60   5.21   5.32   5.54   6.05   6.49   6.77
GDT RMS_ALL_CA  25.95  25.88  45.72  45.72  45.72  26.21  26.21  25.92  29.31  29.23  30.04  25.80  26.50  26.57  25.35  25.38  25.47  24.95  26.89  26.79

#      Molecule1      Molecule2       DISTANCE
LGA    I      10      I      10         19.643
LGA    M      11      M      11         13.828
LGA    T      12      T      12         10.344
LGA    F      13      F      13          5.148
LGA    S      14      S      14          3.664
LGA    G      15      G      15          1.426
LGA    Q      16      Q      16          1.472
LGA    E      17      E      17          1.323
LGA    L      18      L      18          0.977
LGA    T      19      T      19          0.903
LGA    A      20      A      20          0.852
LGA    I      21      I      21          0.654
LGA    I      22      I      22          0.416
LGA    K      23      K      23          0.745
LGA    M      24      M      24          0.833
LGA    A      25      A      25          0.637
LGA    K      26      K      26          0.709
LGA    S      27      S      27          1.165
LGA    M      28      M      28          1.063
LGA    V      29      V      29          0.496
LGA    M      30      M      30          1.540
LGA    A      31      A      31          3.070
LGA    D      32      D      32          3.917
LGA    G      33      G      33          5.583
LGA    K      34      K      34         10.482
LGA    I      35      I      35         16.848
LGA    K      36      K      36         23.056
LGA    P      37      P      37         28.179
LGA    A      38      A      38         30.705
LGA    E      39      E      39         29.188
LGA    I      40      I      40         26.301
LGA    A      41      A      41         27.991
LGA    V      42      V      42         29.114
LGA    M      43      M      43         26.197
LGA    T      44      T      44         25.618
LGA    R      45      R      45         27.383
LGA    E      46      E      46         27.214
LGA    F      47      F      47         25.155
LGA    M      48      M      48         26.484
LGA    R      49      R      49         26.832
LGA    F      50      F      50         25.528
LGA    G      51      G      51         26.898
LGA    I      52      I      52         23.741
LGA    L      53      L      53         21.822
LGA    Q      54      Q      54         17.403
LGA    D      55      D      55         18.881
LGA    Q      56      Q      56         16.541
LGA    V      57      V      57          9.686
LGA    D      58      D      58         10.526
LGA    L      59      L      59         14.834
LGA    L      60      L      60          9.425
LGA    L      61      L      61          8.478
LGA    K      62      K      62         15.488
LGA    A      63      A      63         16.008
LGA    S      64      S      64         14.027
LGA    D      65      D      65         20.258
LGA    S      66      S      66         24.390
LGA    I      67      I      67         22.408
LGA    E      68      E      68         26.319
LGA    A      69      A      69         27.542
LGA    S      70      S      70         28.949
LGA    Q      71      Q      71         27.488
LGA    A      72      A      72         27.463
LGA    V      73      V      73         29.846
LGA    A      74      A      74         29.794
LGA    L      75      L      75         28.362
LGA    I      76      I      76         29.647
LGA    A      77      A      77         31.562
LGA    R      78      R      78         30.585
LGA    M      79      M      79         30.311
LGA    D      80      D      80         30.173
LGA    E      81      E      81         28.504
LGA    E      82      E      82         27.169
LGA    R      83      R      83         30.450
LGA    K      84      K      84         33.788
LGA    K      85      K      85         32.795
LGA    Y      86      Y      86         33.597
LGA    V      87      V      87         38.164
LGA    A      88      A      88         40.321
LGA    S      89      S      89         40.016
LGA    Y      90      Y      90         42.377
LGA    L      91      L      91         46.957
LGA    G      92      G      92         48.070
LGA    V      93      V      93         48.737
LGA    I      94      I      94         52.121
LGA    M      95      M      95         56.064
LGA    A      96      A      96         56.392
LGA    S      97      S      97         54.641
LGA    D      98      D      98         49.950
LGA    G      99      G      99         44.729
LGA    D     100      D     100         44.590
LGA    I     101      I     101         42.549
LGA    D     102      D     102         42.587
LGA    D     103      D     103         40.191
LGA    N     104      N     104         39.376
LGA    E     105      E     105         34.620
LGA    L     106      L     106         31.874
LGA    A     107      A     107         32.744
LGA    L     108      L     108         29.795
LGA    W     109      W     109         24.782
LGA    T     110      T     110         24.634
LGA    L     111      L     111         25.893
LGA    I     112      I     112         20.914
LGA    S     113      S     113         17.235
LGA    T     114      T     114         20.369
LGA    L     115      L     115         20.185
LGA    C     116      C     116         14.677
LGA    G     117      G     117         15.398
LGA    L     118      L     118         11.681
LGA    P     119      P     119          7.062
LGA    T     120      T     120          2.969
LGA    M     121      M     121          6.198
LGA    T     122      T     122         12.700
LGA    V     123      V     123         16.892
LGA    M     124      M     124         20.368
LGA    E     125      E     125         14.939
LGA    A     126      A     126         12.985
LGA    I     127      I     127         19.319
LGA    N     128      N     128         18.527
LGA    N     129      N     129         12.026
LGA    M     130      M     130         15.131
LGA    K     131      K     131         19.567
LGA    N     132      N     132         17.858

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  123  123    4.0     20    1.67    17.886    16.318     1.131

LGA_LOCAL      RMSD =  1.668  Number of atoms =   20  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 26.214  Number of atoms =  123 
Std_ALL_ATOMS  RMSD = 22.120  (standard rmsd on all 123 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.506666 * X  +   0.000387 * Y  +  -0.862142 * Z  +  14.515130
  Y_new =  -0.393037 * X  +  -0.890143 * Y  +   0.230582 * Z  +  14.649051
  Z_new =  -0.767340 * X  +   0.455682 * Y  +   0.451157 * Z  +  31.251148 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   0.790388   -2.351205  [ DEG:    45.2859   -134.7141 ]
  Theta =   0.874683    2.266910  [ DEG:    50.1156    129.8844 ]
  Phi   =  -2.481825    0.659767  [ DEG:  -142.1981     37.8019 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0307TS168_4-D1                               
REMARK     2: T0307_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0307TS168_4-D1.T0307_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  123  123   4.0   20   1.67  16.318    22.12
REMARK  ---------------------------------------------------------- 
MOLECULE T0307TS168_4-D1
PFRMAT TS
TARGET T0307
MODEL 4
PARENT N/A
ATOM     10  CA  ILE    10      22.394   6.614  47.805  1.00 25.00           C
ATOM     11  CA  MET    11      20.448   9.366  46.053  1.00 25.00           C
ATOM     12  CA  THR    12      21.638  13.015  45.929  1.00 25.00           C
ATOM     13  CA  PHE    13      19.759  15.516  43.742  1.00 25.00           C
ATOM     14  CA  SER    14      22.662  17.770  42.773  1.00 25.00           C
ATOM     15  CA  GLY    15      21.847  17.133  39.162  1.00 25.00           C
ATOM     16  CA  GLN    16      23.475  13.702  39.658  1.00 25.00           C
ATOM     17  CA  GLU    17      20.444  12.004  38.047  1.00 25.00           C
ATOM     18  CA  LEU    18      20.641  14.413  35.077  1.00 25.00           C
ATOM     19  CA  THR    19      24.377  13.663  34.686  1.00 25.00           C
ATOM     20  CA  ALA    20      23.655   9.903  34.759  1.00 25.00           C
ATOM     21  CA  ILE    21      20.943  10.346  32.091  1.00 25.00           C
ATOM     22  CA  ILE    22      23.379  12.341  29.911  1.00 25.00           C
ATOM     23  CA  LYS    23      26.018   9.594  30.302  1.00 25.00           C
ATOM     24  CA  MET    24      23.438   6.941  29.312  1.00 25.00           C
ATOM     25  CA  ALA    25      22.469   8.999  26.232  1.00 25.00           C
ATOM     26  CA  LYS    26      26.159   9.326  25.258  1.00 25.00           C
ATOM     27  CA  SER    27      26.620   5.543  25.643  1.00 25.00           C
ATOM     28  CA  MET    28      23.544   4.920  23.450  1.00 25.00           C
ATOM     29  CA  VAL    29      24.923   7.306  20.792  1.00 25.00           C
ATOM     30  CA  MET    30      28.295   5.490  20.875  1.00 25.00           C
ATOM     31  CA  ALA    31      29.687   4.145  17.644  1.00 25.00           C
ATOM     32  CA  ASP    32      32.292   3.176  15.045  1.00 25.00           C
ATOM     33  CA  GLY    33      34.990   2.508  12.446  1.00 25.00           C
ATOM     34  CA  LYS    34      38.125   1.830  10.490  1.00 25.00           C
ATOM     35  CA  ILE    35      41.286   1.635   8.310  1.00 25.00           C
ATOM     36  CA  LYS    36      44.917   1.879   7.113  1.00 25.00           C
ATOM     37  CA  PRO    37      48.694   2.601   7.232  1.00 25.00           C
ATOM     38  CA  ALA    38      48.230   1.608  10.902  1.00 25.00           C
ATOM     39  CA  GLU    39      48.725   5.251  11.975  1.00 25.00           C
ATOM     40  CA  ILE    40      46.138   6.389   9.390  1.00 25.00           C
ATOM     41  CA  ALA    41      43.664   3.762  10.673  1.00 25.00           C
ATOM     42  CA  VAL    42      44.232   4.947  14.270  1.00 25.00           C
ATOM     43  CA  MET    43      43.631   8.574  13.196  1.00 25.00           C
ATOM     44  CA  THR    44      40.395   7.540  11.429  1.00 25.00           C
ATOM     45  CA  ARG    45      39.242   5.684  14.575  1.00 25.00           C
ATOM     46  CA  GLU    46      40.002   8.773  16.707  1.00 25.00           C
ATOM     47  CA  PHE    47      38.012  10.968  14.279  1.00 25.00           C
ATOM     48  CA  MET    48      35.066   8.527  14.447  1.00 25.00           C
ATOM     49  CA  ARG    49      35.200   8.591  18.274  1.00 25.00           C
ATOM     50  CA  PHE    50      35.223  12.421  18.234  1.00 25.00           C
ATOM     51  CA  GLY    51      32.203  12.438  15.879  1.00 25.00           C
ATOM     52  CA  ILE    52      30.352  10.014  18.195  1.00 25.00           C
ATOM     53  CA  LEU    53      31.137  12.249  21.204  1.00 25.00           C
ATOM     54  CA  GLN    54      29.838  15.308  19.300  1.00 25.00           C
ATOM     55  CA  ASP    55      26.627  13.421  18.411  1.00 25.00           C
ATOM     56  CA  GLN    56      26.163  12.429  22.080  1.00 25.00           C
ATOM     57  CA  VAL    57      26.658  16.072  23.153  1.00 25.00           C
ATOM     58  CA  ASP    58      24.071  17.210  20.568  1.00 25.00           C
ATOM     59  CA  LEU    59      21.597  14.583  21.851  1.00 25.00           C
ATOM     60  CA  LEU    60      22.166  15.768  25.448  1.00 25.00           C
ATOM     61  CA  LEU    61      21.565  19.394  24.374  1.00 25.00           C
ATOM     62  CA  LYS    62      18.327  18.361  22.608  1.00 25.00           C
ATOM     63  CA  ALA    63      17.175  16.504  25.753  1.00 25.00           C
ATOM     64  CA  SER    64      17.935  19.594  27.884  1.00 25.00           C
ATOM     65  CA  ASP    65      15.946  21.789  25.457  1.00 25.00           C
ATOM     66  CA  SER    66      12.999  19.347  25.626  1.00 25.00           C
ATOM     67  CA  ILE    67      13.134  19.412  29.453  1.00 25.00           C
ATOM     68  CA  GLU    68      13.155  23.241  29.412  1.00 25.00           C
ATOM     69  CA  ALA    69      10.136  23.258  27.058  1.00 25.00           C
ATOM     70  CA  SER    70       8.285  20.835  29.374  1.00 25.00           C
ATOM     71  CA  GLN    71       9.071  23.070  32.382  1.00 25.00           C
ATOM     72  CA  ALA    72       7.771  26.129  30.478  1.00 25.00           C
ATOM     73  CA  VAL    73       4.559  24.241  29.588  1.00 25.00           C
ATOM     74  CA  ALA    74       4.097  23.250  33.259  1.00 25.00           C
ATOM     75  CA  LEU    75       4.591  26.893  34.332  1.00 25.00           C
ATOM     76  CA  ILE    76       2.005  28.031  31.746  1.00 25.00           C
ATOM     77  CA  ALA    77      -0.470  25.403  33.029  1.00 25.00           C
ATOM     78  CA  ARG    78       0.099  26.588  36.626  1.00 25.00           C
ATOM     79  CA  MET    79      -0.502  30.215  35.553  1.00 25.00           C
ATOM     80  CA  ASP    80      -3.740  29.182  33.786  1.00 25.00           C
ATOM     81  CA  GLU    81      -4.892  27.325  36.931  1.00 25.00           C
ATOM     82  CA  GLU    82      -4.132  30.415  39.063  1.00 25.00           C
ATOM     83  CA  ARG    83      -6.122  32.609  36.635  1.00 25.00           C
ATOM     84  CA  LYS    84      -9.068  30.168  36.804  1.00 25.00           C
ATOM     85  CA  LYS    85      -8.933  30.233  40.631  1.00 25.00           C
ATOM     86  CA  TYR    86      -8.912  34.062  40.590  1.00 25.00           C
ATOM     87  CA  VAL    87     -11.932  34.079  38.235  1.00 25.00           C
ATOM     88  CA  ALA    88     -13.781  31.655  40.552  1.00 25.00           C
ATOM     89  CA  SER    89     -12.996  33.891  43.560  1.00 25.00           C
ATOM     90  CA  TYR    90     -14.296  36.950  41.656  1.00 25.00           C
ATOM     91  CA  LEU    91     -17.508  35.062  40.767  1.00 25.00           C
ATOM     92  CA  GLY    92     -17.971  34.071  44.437  1.00 25.00           C
ATOM     93  CA  VAL    93     -17.476  37.714  45.509  1.00 25.00           C
ATOM     94  CA  ILE    94     -20.063  38.851  42.924  1.00 25.00           C
ATOM     95  CA  MET    95     -22.537  36.224  44.208  1.00 25.00           C
ATOM     96  CA  ALA    96     -21.969  37.411  47.805  1.00 25.00           C
ATOM     97  CA  SER    97     -20.016  34.200  48.181  1.00 25.00           C
ATOM     98  CA  ASP    98     -17.696  31.136  47.835  1.00 25.00           C
ATOM     99  CA  GLY    99     -15.430  28.393  46.400  1.00 25.00           C
ATOM    100  CA  ASP   100     -12.793  26.142  44.979  1.00 25.00           C
ATOM    101  CA  ILE   101     -10.223  23.793  43.341  1.00 25.00           C
ATOM    102  CA  ASP   102      -7.587  21.645  41.639  1.00 25.00           C
ATOM    103  CA  ASP   103      -4.903  19.819  39.656  1.00 25.00           C
ATOM    104  CA  ASN   104      -1.726  21.336  38.147  1.00 25.00           C
ATOM    105  CA  GLU   105       0.427  18.888  40.156  1.00 25.00           C
ATOM    106  CA  LEU   106      -1.719  15.960  38.937  1.00 25.00           C
ATOM    107  CA  ALA   107      -1.350  17.164  35.319  1.00 25.00           C
ATOM    108  CA  LEU   108       2.446  17.412  35.765  1.00 25.00           C
ATOM    109  CA  TRP   109       2.535  13.861  37.196  1.00 25.00           C
ATOM    110  CA  THR   110       0.485  12.585  34.222  1.00 25.00           C
ATOM    111  CA  LEU   111       2.885  14.317  31.793  1.00 25.00           C
ATOM    112  CA  ILE   112       5.878  12.731  33.579  1.00 25.00           C
ATOM    113  CA  SER   113       4.216   9.287  33.358  1.00 25.00           C
ATOM    114  CA  THR   114       3.577   9.809  29.617  1.00 25.00           C
ATOM    115  CA  LEU   115       7.238  10.809  29.107  1.00 25.00           C
ATOM    116  CA  CYS   116       9.323   7.972  27.827  1.00 25.00           C
ATOM    117  CA  GLY   117       7.043   5.804  25.720  1.00 25.00           C
ATOM    118  CA  LEU   118       9.699   5.101  23.050  1.00 25.00           C
ATOM    119  CA  PRO   119      10.128   1.756  24.847  1.00 25.00           C
ATOM    120  CA  THR   120       9.097   0.254  28.252  1.00 25.00           C
ATOM    121  CA  MET   121       8.780   2.647  31.203  1.00 25.00           C
ATOM    122  CA  THR   122      11.233   2.076  34.056  1.00 25.00           C
ATOM    123  CA  VAL   123       8.767   1.340  36.893  1.00 25.00           C
ATOM    124  CA  MET   124      11.233   2.781  39.444  1.00 25.00           C
ATOM    125  CA  GLU   125      11.649   5.928  37.302  1.00 25.00           C
ATOM    126  CA  ALA   126       7.844   6.305  37.074  1.00 25.00           C
ATOM    127  CA  ILE   127       7.556   5.938  40.875  1.00 25.00           C
ATOM    128  CA  ASN   128      10.266   8.600  41.362  1.00 25.00           C
ATOM    129  CA  ASN   129       8.419  10.954  38.972  1.00 25.00           C
ATOM    130  CA  MET   130       5.156  10.385  40.895  1.00 25.00           C
ATOM    131  CA  LYS   131       7.044  11.412  44.008  1.00 25.00           C
ATOM    132  CA  ASN   132       8.292  14.857  45.086  1.00 25.00           C
TER
END
