
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  123 (  123),  selected  123 , name T0307TS393_1-D1
# Molecule2: number of CA atoms  123 (  939),  selected  123 , name T0307_D1.pdb
# PARAMETERS: T0307TS393_1-D1.T0307_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    25        10 - 34          4.94    32.15
  LCS_AVERAGE:     19.15

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    19        15 - 33          1.99    27.39
  LCS_AVERAGE:     12.62

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    17        80 - 96          0.51    45.40
  LCS_AVERAGE:     10.19

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  123
LCS_GDT     I      10     I      10      5    5   25     3    5    5    6    7   10   13   14   19   21   23   26   29   29   30   34   37   38   41   42 
LCS_GDT     M      11     M      11      5    5   25     3    5    5    6    9   11   13   15   19   21   23   26   29   29   30   34   37   38   41   42 
LCS_GDT     T      12     T      12      5    5   25     3    5    5    6    9   11   13   15   19   21   23   26   29   29   30   34   37   38   41   42 
LCS_GDT     F      13     F      13      5    5   25     3    5    5    6    9   11   13   16   19   20   23   26   29   29   30   34   37   38   41   42 
LCS_GDT     S      14     S      14      5   18   25     3    5    5    6    9   13   18   18   20   21   23   26   29   29   30   34   37   38   40   42 
LCS_GDT     G      15     G      15     16   19   25    15   16   17   17   17   18   18   19   21   21   23   26   29   29   30   34   37   38   41   42 
LCS_GDT     Q      16     Q      16     16   19   25    15   16   17   17   17   18   18   19   21   21   23   25   29   29   30   34   37   38   41   42 
LCS_GDT     E      17     E      17     16   19   25    15   16   17   17   17   18   18   19   21   21   23   26   29   29   30   34   37   38   41   42 
LCS_GDT     L      18     L      18     16   19   25    15   16   17   17   17   18   18   19   21   21   23   25   29   29   30   34   37   38   41   42 
LCS_GDT     T      19     T      19     16   19   25    15   16   17   17   17   18   18   19   21   21   23   25   25   27   29   31   37   38   41   42 
LCS_GDT     A      20     A      20     16   19   25    15   16   17   17   17   18   18   19   21   21   23   25   25   27   29   30   32   35   39   41 
LCS_GDT     I      21     I      21     16   19   25    15   16   17   17   17   18   18   19   21   21   23   25   25   27   29   30   32   37   41   42 
LCS_GDT     I      22     I      22     16   19   25    15   16   17   17   17   18   18   19   21   21   23   25   25   28   32   34   36   37   38   39 
LCS_GDT     K      23     K      23     16   19   25    15   16   17   17   17   18   18   19   21   21   23   25   25   27   29   30   31   33   34   39 
LCS_GDT     M      24     M      24     16   19   25    15   16   17   17   17   18   18   19   21   21   23   25   25   27   29   30   31   33   36   39 
LCS_GDT     A      25     A      25     16   19   25    15   16   17   17   17   18   18   19   21   21   23   25   25   27   32   34   36   37   38   39 
LCS_GDT     K      26     K      26     16   19   25    15   16   17   17   17   18   18   19   21   21   23   25   25   27   29   30   33   36   37   39 
LCS_GDT     S      27     S      27     16   19   25    15   16   17   17   17   18   18   19   21   21   23   25   25   27   29   30   31   33   34   37 
LCS_GDT     M      28     M      28     16   19   25    15   16   17   17   17   18   18   19   21   21   23   25   25   25   29   30   31   33   34   37 
LCS_GDT     V      29     V      29     16   19   25    15   16   17   17   17   18   18   19   21   21   23   25   25   27   29   30   30   30   34   37 
LCS_GDT     M      30     M      30     16   19   25    12   16   17   17   17   18   18   19   21   21   23   25   25   27   29   30   30   33   34   35 
LCS_GDT     A      31     A      31      3   19   25     0    3    3    4    8   18   18   19   21   21   23   25   25   27   29   30   30   30   31   32 
LCS_GDT     D      32     D      32      0   19   25     0    0    3    4    8   15   18   19   21   21   22   25   25   27   29   30   30   30   31   32 
LCS_GDT     G      33     G      33      4   19   25     0    3    5    5    7    7    8   19   21   21   22   23   24   27   29   30   30   30   31   32 
LCS_GDT     K      34     K      34      4    7   25     0    3    5    5    7    7    8    8   12   13   22   22   23   24   24   25   29   30   31   32 
LCS_GDT     I      35     I      35      4    7   24     1    3    5    5    7    7    8    9   12   15   16   18   20   21   21   23   24   25   26   30 
LCS_GDT     K      36     K      36      4   16   22     3    3    5    5    7   11   14   16   17   17   18   18   20   21   21   22   24   25   26   30 
LCS_GDT     P      37     P      37     15   16   22     9   12   15   15   15   15   16   16   17   17   18   18   20   21   21   22   24   25   25   29 
LCS_GDT     A      38     A      38     15   16   22     9   12   15   15   15   15   16   16   17   17   18   18   20   21   21   22   24   25   26   30 
LCS_GDT     E      39     E      39     15   16   22     9   12   15   15   15   15   16   16   17   17   18   18   20   21   21   22   24   25   26   30 
LCS_GDT     I      40     I      40     15   16   22     9   12   15   15   15   15   16   16   17   17   18   18   20   21   21   22   24   25   25   30 
LCS_GDT     A      41     A      41     15   16   22     9   12   15   15   15   15   16   16   17   17   18   18   20   21   21   22   24   25   28   31 
LCS_GDT     V      42     V      42     15   16   22     9   12   15   15   15   15   16   16   17   17   18   18   20   21   21   22   24   25   28   31 
LCS_GDT     M      43     M      43     15   16   22     9   12   15   15   15   15   16   16   17   17   18   18   20   21   21   22   24   25   28   31 
LCS_GDT     T      44     T      44     15   16   22     9   12   15   15   15   15   16   16   17   17   18   18   20   21   21   22   24   25   28   31 
LCS_GDT     R      45     R      45     15   16   22     9   12   15   15   15   15   16   16   17   17   18   18   20   21   21   22   25   28   32   34 
LCS_GDT     E      46     E      46     15   16   22     5   12   15   15   15   15   16   16   17   17   18   18   20   21   21   22   26   28   32   34 
LCS_GDT     F      47     F      47     15   16   22     9   12   15   15   15   15   16   16   17   17   18   18   20   21   21   22   25   26   28   33 
LCS_GDT     M      48     M      48     15   16   22     4   11   15   15   15   15   16   16   17   17   18   18   20   21   21   25   31   32   36   37 
LCS_GDT     R      49     R      49     15   16   22     4    5   15   15   15   15   16   16   17   17   18   18   20   21   21   29   31   32   36   37 
LCS_GDT     F      50     F      50     15   16   22     4   12   15   15   15   15   16   16   17   17   18   18   20   21   26   29   31   32   36   38 
LCS_GDT     G      51     G      51     15   16   22     4    4   15   15   15   15   16   16   17   17   18   18   19   26   30   30   36   37   38   38 
LCS_GDT     I      52     I      52      3   16   23     3    3    5   12   14   15   16   16   17   17   19   22   26   28   32   34   36   37   38   39 
LCS_GDT     L      53     L      53     13   16   23     5   10   13   15   16   16   16   18   20   20   21   23   26   29   32   34   36   37   38   39 
LCS_GDT     Q      54     Q      54     13   16   23     5   10   13   15   16   16   17   18   20   20   21   23   26   29   32   34   36   37   38   39 
LCS_GDT     D      55     D      55     13   16   23     5    9   13   15   16   16   17   18   20   20   21   23   26   29   32   34   36   37   38   39 
LCS_GDT     Q      56     Q      56     13   16   23     8   12   13   15   16   16   17   18   20   20   21   23   26   29   32   34   36   37   38   39 
LCS_GDT     V      57     V      57     13   16   23     8   12   13   15   16   16   17   18   20   20   21   23   26   29   32   34   36   37   38   39 
LCS_GDT     D      58     D      58     13   16   23     8   12   13   15   16   16   17   18   20   20   21   23   26   29   32   34   36   37   38   39 
LCS_GDT     L      59     L      59     13   16   23     8   12   13   15   16   16   17   18   20   20   21   23   26   29   32   34   36   37   38   39 
LCS_GDT     L      60     L      60     13   16   23     8   12   13   15   16   16   17   18   20   20   21   23   26   29   32   34   36   37   38   39 
LCS_GDT     L      61     L      61     13   16   23     8   12   13   15   16   16   17   18   20   20   23   25   26   29   32   34   36   37   38   39 
LCS_GDT     K      62     K      62     13   16   23     8   12   13   15   16   16   17   18   20   20   23   25   26   29   32   34   36   37   38   40 
LCS_GDT     A      63     A      63     13   16   23     8   12   13   15   16   16   17   18   20   20   21   23   26   29   32   34   36   37   39   40 
LCS_GDT     S      64     S      64     13   16   23     8   12   13   15   16   16   17   18   20   20   21   23   26   29   32   34   36   37   39   40 
LCS_GDT     D      65     D      65     13   16   23     3   12   13   15   16   16   16   17   20   20   21   23   26   27   32   32   36   37   39   40 
LCS_GDT     S      66     S      66     13   16   23     3   12   12   15   16   16   17   18   20   20   21   23   26   29   32   34   36   37   41   42 
LCS_GDT     I      67     I      67     13   16   23     3   12   12   15   16   16   17   18   20   20   21   23   26   29   32   34   36   37   41   42 
LCS_GDT     E      68     E      68     13   16   23    10   12   12   12   16   16   16   18   20   20   21   23   26   29   32   34   36   38   41   42 
LCS_GDT     A      69     A      69     12   14   23    10   12   12   12   13   13   17   18   20   21   23   26   29   29   32   34   37   38   41   42 
LCS_GDT     S      70     S      70     12   14   23    10   12   12   12   13   13   14   15   18   20   23   26   29   29   32   34   37   38   41   42 
LCS_GDT     Q      71     Q      71     12   14   23    10   12   12   12   13   13   17   18   20   20   21   23   26   29   32   34   36   37   38   41 
LCS_GDT     A      72     A      72     12   14   23    10   12   12   12   13   13   14   15   17   18   20   23   25   26   27   33   34   36   40   41 
LCS_GDT     V      73     V      73     12   14   23    10   12   12   12   13   13   14   15   17   18   20   21   25   26   27   29   33   36   37   39 
LCS_GDT     A      74     A      74     12   14   23    10   12   12   12   13   13   14   15   17   18   20   23   25   26   27   29   33   36   37   39 
LCS_GDT     L      75     L      75     12   14   24    10   12   12   12   13   13   14   15   17   17   19   20   22   23   26   27   30   31   35   38 
LCS_GDT     I      76     I      76     12   14   24    10   12   12   12   13   13   14   15   17   17   19   20   22   23   24   26   28   31   32   34 
LCS_GDT     A      77     A      77     12   14   24    10   12   12   12   13   13   14   15   17   18   19   21   22   23   24   26   28   31   32   34 
LCS_GDT     R      78     R      78     12   14   24    10   12   12   12   13   13   14   15   17   18   19   21   22   23   24   26   28   31   32   34 
LCS_GDT     M      79     M      79     12   18   24     5   12   12   12   13   13   16   18   18   19   19   21   21   22   24   25   27   30   31   32 
LCS_GDT     D      80     D      80     17   18   24     9   16   17   17   17   17   17   18   18   19   19   21   21   21   22   24   26   28   28   29 
LCS_GDT     E      81     E      81     17   18   24    14   16   17   17   17   17   17   18   18   19   19   21   21   21   22   23   25   27   28   29 
LCS_GDT     E      82     E      82     17   18   24    14   16   17   17   17   17   17   18   18   19   19   21   21   21   22   24   25   26   28   29 
LCS_GDT     R      83     R      83     17   18   24    14   16   17   17   17   17   17   18   18   19   19   21   21   21   22   24   25   26   28   29 
LCS_GDT     K      84     K      84     17   18   24    14   16   17   17   17   17   17   18   18   19   19   21   21   21   22   24   25   26   26   29 
LCS_GDT     K      85     K      85     17   18   24    14   16   17   17   17   17   17   18   18   19   19   21   21   21   22   24   25   26   26   27 
LCS_GDT     Y      86     Y      86     17   18   24    14   16   17   17   17   17   17   18   18   19   19   21   21   21   22   24   25   26   26   27 
LCS_GDT     V      87     V      87     17   18   24    14   16   17   17   17   17   17   18   18   19   19   21   21   21   22   24   25   26   26   27 
LCS_GDT     A      88     A      88     17   18   24    14   16   17   17   17   17   17   18   18   19   19   21   21   21   22   24   25   26   26   27 
LCS_GDT     S      89     S      89     17   18   24    14   16   17   17   17   17   17   18   18   19   19   21   21   21   22   24   25   26   26   27 
LCS_GDT     Y      90     Y      90     17   18   24    14   16   17   17   17   17   17   18   18   19   19   21   21   21   22   24   25   26   26   27 
LCS_GDT     L      91     L      91     17   18   24    14   16   17   17   17   17   17   18   18   19   19   21   21   21   22   24   25   26   26   27 
LCS_GDT     G      92     G      92     17   18   24    14   16   17   17   17   17   17   18   18   19   19   21   21   21   22   24   25   26   26   27 
LCS_GDT     V      93     V      93     17   18   24    14   16   17   17   17   17   17   18   18   19   19   21   21   21   22   24   25   26   26   27 
LCS_GDT     I      94     I      94     17   18   24    14   16   17   17   17   17   17   18   18   19   19   21   21   21   22   24   25   26   26   27 
LCS_GDT     M      95     M      95     17   18   24     4   14   17   17   17   17   17   18   18   19   19   21   21   21   22   24   25   26   26   27 
LCS_GDT     A      96     A      96     17   18   24    14   16   17   17   17   17   17   18   18   19   19   21   21   21   22   24   25   26   26   27 
LCS_GDT     S      97     S      97      3   18   24     3    3    4    4    5    8   11   18   18   19   19   21   21   21   22   24   25   26   26   27 
LCS_GDT     D      98     D      98      3    7   24     2    3    3    4    5    7    7    7    9   10   12   14   18   20   20   24   25   26   29   30 
LCS_GDT     G      99     G      99      4    7   24     0    3    6    6    6    7    7    8   10   12   15   19   19   20   22   24   25   26   29   33 
LCS_GDT     D     100     D     100      4    7   23     0    2    6    6    6    7    7    8   11   14   15   18   22   25   26   28   32   34   36   37 
LCS_GDT     I     101     I     101      4    7   19     1    3    6    6    6    7    7    8   13   14   16   19   22   25   28   30   32   36   39   40 
LCS_GDT     D     102     D     102      4   16   20     0    3    6   13   14   14   16   16   19   21   23   26   27   29   29   34   37   38   41   42 
LCS_GDT     D     103     D     103     14   16   20    12   13   13   14   14   15   16   16   19   21   23   26   29   29   30   34   37   38   41   42 
LCS_GDT     N     104     N     104     14   16   24    12   13   13   14   14   15   16   16   17   19   22   25   29   29   30   34   37   38   41   42 
LCS_GDT     E     105     E     105     14   16   24    12   13   13   14   14   15   16   16   19   21   23   26   29   29   30   34   37   38   41   42 
LCS_GDT     L     106     L     106     14   16   24    12   13   13   14   14   15   16   16   19   21   23   26   29   29   30   34   37   38   41   42 
LCS_GDT     A     107     A     107     14   16   24    12   13   13   14   14   15   16   16   19   21   23   26   29   29   30   34   37   38   41   42 
LCS_GDT     L     108     L     108     14   16   24    12   13   13   14   14   15   16   16   19   21   23   26   29   29   30   34   37   38   41   42 
LCS_GDT     W     109     W     109     14   16   24    12   13   13   14   14   15   16   16   19   21   23   26   29   29   30   34   37   38   41   42 
LCS_GDT     T     110     T     110     14   16   24    12   13   13   14   14   15   16   16   19   21   23   26   29   29   30   34   37   38   41   42 
LCS_GDT     L     111     L     111     14   16   24    12   13   13   14   14   15   16   16   19   21   23   26   29   29   30   34   37   38   41   42 
LCS_GDT     I     112     I     112     14   16   24    12   13   13   14   14   15   17   18   20   21   23   26   29   29   32   34   37   38   41   42 
LCS_GDT     S     113     S     113     14   16   24    12   13   13   14   14   15   17   18   20   21   23   26   29   29   32   34   37   38   41   42 
LCS_GDT     T     114     T     114     14   16   24    12   13   13   14   14   15   16   16   19   21   23   26   29   29   32   34   37   38   41   42 
LCS_GDT     L     115     L     115     14   16   24    10   13   13   14   14   15   16   16   19   21   23   26   29   29   32   34   37   38   41   42 
LCS_GDT     C     116     C     116     14   16   24     3    3   10   14   14   15   16   16   19   21   22   26   29   29   32   34   37   38   41   42 
LCS_GDT     G     117     G     117      4   16   24     3    3    4    5   12   15   16   16   17   19   21   26   29   29   32   34   37   38   41   42 
LCS_GDT     L     118     L     118      4    6   24     3    3    4    5    7   17   18   19   21   21   22   23   26   29   32   34   37   38   41   42 
LCS_GDT     P     119     P     119      4   14   24     3   16   17   17   17   18   18   19   21   21   22   23   26   29   32   34   37   38   41   42 
LCS_GDT     T     120     T     120     11   14   24     3    8    9   11   13   17   18   18   19   19   21   23   26   29   32   34   37   38   41   42 
LCS_GDT     M     121     M     121     12   14   24     3   10   11   12   13   13   14   15   16   17   19   23   26   29   32   34   37   38   41   42 
LCS_GDT     T     122     T     122     12   14   24     9   10   11   12   13   13   14   15   16   16   19   23   26   29   32   34   36   37   38   39 
LCS_GDT     V     123     V     123     12   14   24     9   10   11   12   13   13   14   16   16   19   21   22   25   29   32   34   36   37   38   39 
LCS_GDT     M     124     M     124     12   14   24     9   10   11   12   13   13   14   15   16   16   19   22   24   27   27   29   32   33   35   38 
LCS_GDT     E     125     E     125     12   14   24     9   10   11   12   13   13   14   15   16   16   19   22   24   27   27   29   32   33   38   41 
LCS_GDT     A     126     A     126     12   14   24     9   10   11   12   13   13   14   15   17   19   21   23   29   29   30   34   37   38   41   42 
LCS_GDT     I     127     I     127     12   14   24     9   10   11   12   13   13   14   15   16   19   21   23   24   29   30   34   37   38   41   42 
LCS_GDT     N     128     N     128     12   14   24     9   10   11   12   13   13   14   15   16   16   19   21   23   26   27   30   32   35   41   42 
LCS_GDT     N     129     N     129     12   14   22     9   10   11   12   13   13   14   15   16   16   18   20   23   26   28   32   37   38   41   42 
LCS_GDT     M     130     M     130     12   14   21     9   10   11   12   13   13   14   15   16   19   23   26   29   29   30   34   37   38   41   42 
LCS_GDT     K     131     K     131     12   14   21     3    7   11   12   13   13   14   15   16   19   21   26   29   29   30   34   37   38   41   42 
LCS_GDT     N     132     N     132     12   14   21     3    3    4   12   13   13   14   15   16   16   17   19   23   25   28   30   33   36   39   41 
LCS_AVERAGE  LCS_A:  13.99  (  10.19   12.62   19.15 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     15     16     17     17     17     18     18     19     21     21     23     26     29     29     32     34     37     38     41     42 
GDT PERCENT_CA  12.20  13.01  13.82  13.82  13.82  14.63  14.63  15.45  17.07  17.07  18.70  21.14  23.58  23.58  26.02  27.64  30.08  30.89  33.33  34.15
GDT RMS_LOCAL    0.29   0.33   0.46   0.46   0.46   1.26   0.98   1.51   2.14   2.14   3.74   4.28   4.68   4.68   5.39   5.42   5.76   5.90   6.43   6.45
GDT RMS_ALL_CA  26.45  26.39  26.54  26.54  26.54  26.80  26.60  26.80  27.15  27.15  31.63  28.38  28.44  28.44  26.19  28.47  28.27  28.19  27.56  27.70

#      Molecule1      Molecule2       DISTANCE
LGA    I      10      I      10         24.730
LGA    M      11      M      11         19.536
LGA    T      12      T      12         14.459
LGA    F      13      F      13          9.364
LGA    S      14      S      14          7.223
LGA    G      15      G      15          1.032
LGA    Q      16      Q      16          0.973
LGA    E      17      E      17          0.832
LGA    L      18      L      18          0.273
LGA    T      19      T      19          0.217
LGA    A      20      A      20          0.636
LGA    I      21      I      21          0.697
LGA    I      22      I      22          0.511
LGA    K      23      K      23          0.489
LGA    M      24      M      24          0.980
LGA    A      25      A      25          1.185
LGA    K      26      K      26          1.209
LGA    S      27      S      27          1.495
LGA    M      28      M      28          1.735
LGA    V      29      V      29          1.663
LGA    M      30      M      30          2.599
LGA    A      31      A      31          3.600
LGA    D      32      D      32          4.404
LGA    G      33      G      33          5.042
LGA    K      34      K      34          8.550
LGA    I      35      I      35         14.620
LGA    K      36      K      36         19.746
LGA    P      37      P      37         25.421
LGA    A      38      A      38         25.531
LGA    E      39      E      39         25.049
LGA    I      40      I      40         24.897
LGA    A      41      A      41         25.457
LGA    V      42      V      42         25.523
LGA    M      43      M      43         24.641
LGA    T      44      T      44         25.026
LGA    R      45      R      45         25.364
LGA    E      46      E      46         25.044
LGA    F      47      F      47         24.383
LGA    M      48      M      48         25.619
LGA    R      49      R      49         25.570
LGA    F      50      F      50         25.175
LGA    G      51      G      51         26.184
LGA    I      52      I      52         24.703
LGA    L      53      L      53         25.722
LGA    Q      54      Q      54         21.944
LGA    D      55      D      55         20.843
LGA    Q      56      Q      56         21.351
LGA    V      57      V      57         17.937
LGA    D      58      D      58         15.809
LGA    L      59      L      59         17.653
LGA    L      60      L      60         17.971
LGA    L      61      L      61         14.929
LGA    K      62      K      62         16.162
LGA    A      63      A      63         19.844
LGA    S      64      S      64         19.268
LGA    D      65      D      65         20.131
LGA    S      66      S      66         23.188
LGA    I      67      I      67         25.443
LGA    E      68      E      68         25.296
LGA    A      69      A      69         23.276
LGA    S      70      S      70         28.270
LGA    Q      71      Q      71         27.159
LGA    A      72      A      72         22.336
LGA    V      73      V      73         25.671
LGA    A      74      A      74         28.698
LGA    L      75      L      75         24.302
LGA    I      76      I      76         23.018
LGA    A      77      A      77         28.620
LGA    R      78      R      78         27.703
LGA    M      79      M      79         23.013
LGA    D      80      D      80         23.803
LGA    E      81      E      81         27.284
LGA    E      82      E      82         23.688
LGA    R      83      R      83         25.572
LGA    K      84      K      84         32.059
LGA    K      85      K      85         32.919
LGA    Y      86      Y      86         32.143
LGA    V      87      V      87         36.600
LGA    A      88      A      88         41.425
LGA    S      89      S      89         41.055
LGA    Y      90      Y      90         42.910
LGA    L      91      L      91         48.088
LGA    G      92      G      92         50.633
LGA    V      93      V      93         51.145
LGA    I      94      I      94         54.615
LGA    M      95      M      95         59.606
LGA    A      96      A      96         60.158
LGA    S      97      S      97         59.089
LGA    D      98      D      98         54.603
LGA    G      99      G      99         49.105
LGA    D     100      D     100         48.654
LGA    I     101      I     101         46.168
LGA    D     102      D     102         46.063
LGA    D     103      D     103         43.213
LGA    N     104      N     104         42.321
LGA    E     105      E     105         38.194
LGA    L     106      L     106         34.691
LGA    A     107      A     107         34.654
LGA    L     108      L     108         31.880
LGA    W     109      W     109         27.480
LGA    T     110      T     110         26.131
LGA    L     111      L     111         26.119
LGA    I     112      I     112         21.870
LGA    S     113      S     113         18.466
LGA    T     114      T     114         19.695
LGA    L     115      L     115         17.995
LGA    C     116      C     116         12.176
LGA    G     117      G     117         10.316
LGA    L     118      L     118          3.384
LGA    P     119      P     119          1.986
LGA    T     120      T     120          8.986
LGA    M     121      M     121         14.484
LGA    T     122      T     122         20.437
LGA    V     123      V     123         25.662
LGA    M     124      M     124         27.289
LGA    E     125      E     125         20.828
LGA    A     126      A     126         21.001
LGA    I     127      I     127         26.706
LGA    N     128      N     128         24.160
LGA    N     129      N     129         18.332
LGA    M     130      M     130         22.406
LGA    K     131      K     131         27.981
LGA    N     132      N     132         24.264

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  123  123    4.0     19    1.51    17.480    15.902     1.178

LGA_LOCAL      RMSD =  1.512  Number of atoms =   19  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 27.148  Number of atoms =  123 
Std_ALL_ATOMS  RMSD = 22.214  (standard rmsd on all 123 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.078257 * X  +  -0.544936 * Y  +  -0.834818 * Z  +  14.506083
  Y_new =   0.824423 * X  +  -0.435457 * Y  +   0.361531 * Z  +  12.312218
  Z_new =  -0.560538 * X  +  -0.716535 * Y  +   0.415180 * Z  +  34.324715 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -1.045641    2.095952  [ DEG:   -59.9108    120.0892 ]
  Theta =   0.595036    2.546557  [ DEG:    34.0930    145.9070 ]
  Phi   =   1.476157   -1.665436  [ DEG:    84.5776    -95.4224 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0307TS393_1-D1                               
REMARK     2: T0307_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0307TS393_1-D1.T0307_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  123  123   4.0   19   1.51  15.902    22.21
REMARK  ---------------------------------------------------------- 
MOLECULE T0307TS393_1-D1
PFRMAT TS
TARGET T0307
MODEL 1
PARENT N/A
ATOM     10  CA  ILE    10      29.692   9.286  48.065  1.00 25.00           C
ATOM     11  CA  MET    11      26.940  11.913  48.107  1.00 25.00           C
ATOM     12  CA  THR    12      26.669  15.050  45.971  1.00 25.00           C
ATOM     13  CA  PHE    13      24.784  17.517  43.857  1.00 25.00           C
ATOM     14  CA  SER    14      26.089  19.585  40.889  1.00 25.00           C
ATOM     15  CA  GLY    15      23.327  17.750  38.974  1.00 25.00           C
ATOM     16  CA  GLN    16      25.172  14.444  39.550  1.00 25.00           C
ATOM     17  CA  GLU    17      22.034  12.491  38.548  1.00 25.00           C
ATOM     18  CA  LEU    18      21.706  14.601  35.369  1.00 25.00           C
ATOM     19  CA  THR    19      25.385  13.948  34.525  1.00 25.00           C
ATOM     20  CA  ALA    20      24.862  10.190  35.046  1.00 25.00           C
ATOM     21  CA  ILE    21      21.792  10.274  32.759  1.00 25.00           C
ATOM     22  CA  ILE    22      23.806  12.129  30.082  1.00 25.00           C
ATOM     23  CA  LYS    23      26.604   9.526  30.350  1.00 25.00           C
ATOM     24  CA  MET    24      24.043   6.701  29.983  1.00 25.00           C
ATOM     25  CA  ALA    25      22.563   8.411  26.893  1.00 25.00           C
ATOM     26  CA  LYS    26      26.064   8.768  25.382  1.00 25.00           C
ATOM     27  CA  SER    27      26.755   5.061  26.047  1.00 25.00           C
ATOM     28  CA  MET    28      23.441   4.117  24.377  1.00 25.00           C
ATOM     29  CA  VAL    29      24.327   6.278  21.343  1.00 25.00           C
ATOM     30  CA  MET    30      27.760   4.597  21.117  1.00 25.00           C
ATOM     31  CA  ALA    31      30.398   5.469  18.454  1.00 25.00           C
ATOM     32  CA  ASP    32      32.041   5.066  15.079  1.00 25.00           C
ATOM     33  CA  GLY    33      33.721   4.646  11.629  1.00 25.00           C
ATOM     34  CA  LYS    34      35.272   3.977   8.186  1.00 25.00           C
ATOM     35  CA  ILE    35      36.164   3.187   4.632  1.00 25.00           C
ATOM     36  CA  LYS    36      36.950   2.075   1.035  1.00 25.00           C
ATOM     37  CA  PRO    37      36.205  -0.382  -1.770  1.00 25.00           C
ATOM     38  CA  ALA    38      32.470  -0.127  -2.576  1.00 25.00           C
ATOM     39  CA  GLU    39      31.668  -2.594   0.241  1.00 25.00           C
ATOM     40  CA  ILE    40      33.804  -0.547   2.674  1.00 25.00           C
ATOM     41  CA  ALA    41      31.987   2.653   1.616  1.00 25.00           C
ATOM     42  CA  VAL    42      28.604   0.940   2.156  1.00 25.00           C
ATOM     43  CA  MET    43      29.719  -0.221   5.631  1.00 25.00           C
ATOM     44  CA  THR    44      30.836   3.340   6.489  1.00 25.00           C
ATOM     45  CA  ARG    45      27.455   4.710   5.320  1.00 25.00           C
ATOM     46  CA  GLU    46      25.634   2.118   7.472  1.00 25.00           C
ATOM     47  CA  PHE    47      27.770   3.094  10.498  1.00 25.00           C
ATOM     48  CA  MET    48      26.972   6.792   9.900  1.00 25.00           C
ATOM     49  CA  ARG    49      23.236   5.976   9.687  1.00 25.00           C
ATOM     50  CA  PHE    50      23.454   4.006  12.964  1.00 25.00           C
ATOM     51  CA  GLY    51      25.236   6.950  14.644  1.00 25.00           C
ATOM     52  CA  ILE    52      22.521   9.342  13.387  1.00 25.00           C
ATOM     53  CA  LEU    53      19.804   7.013  14.748  1.00 25.00           C
ATOM     54  CA  GLN    54      21.584   6.874  18.137  1.00 25.00           C
ATOM     55  CA  ASP    55      21.806  10.698  18.203  1.00 25.00           C
ATOM     56  CA  GLN    56      18.071  10.953  17.396  1.00 25.00           C
ATOM     57  CA  VAL    57      17.269   8.486  20.215  1.00 25.00           C
ATOM     58  CA  ASP    58      19.405  10.533  22.647  1.00 25.00           C
ATOM     59  CA  LEU    59      17.587  13.733  21.589  1.00 25.00           C
ATOM     60  CA  LEU    60      14.205  12.020  22.128  1.00 25.00           C
ATOM     61  CA  LEU    61      15.319  10.859  25.603  1.00 25.00           C
ATOM     62  CA  LYS    62      16.437  14.420  26.462  1.00 25.00           C
ATOM     63  CA  ALA    63      13.056  15.788  25.293  1.00 25.00           C
ATOM     64  CA  SER    64      11.235  13.197  27.445  1.00 25.00           C
ATOM     65  CA  ASP    65      13.370  14.173  30.471  1.00 25.00           C
ATOM     66  CA  SER    66      12.573  17.871  29.873  1.00 25.00           C
ATOM     67  CA  ILE    67       8.836  17.056  29.659  1.00 25.00           C
ATOM     68  CA  GLU    68       9.054  15.086  32.937  1.00 25.00           C
ATOM     69  CA  ALA    69      10.837  18.030  34.616  1.00 25.00           C
ATOM     70  CA  SER    70       8.122  20.422  33.360  1.00 25.00           C
ATOM     71  CA  GLN    71       5.405  18.091  34.721  1.00 25.00           C
ATOM     72  CA  ALA    72       7.186  17.954  38.109  1.00 25.00           C
ATOM     73  CA  VAL    73       7.407  21.776  38.176  1.00 25.00           C
ATOM     74  CA  ALA    74       3.671  22.031  37.370  1.00 25.00           C
ATOM     75  CA  LEU    75       2.870  19.565  40.187  1.00 25.00           C
ATOM     76  CA  ILE    76       5.006  21.612  42.619  1.00 25.00           C
ATOM     77  CA  ALA    77       3.188  24.812  41.561  1.00 25.00           C
ATOM     78  CA  ARG    78      -0.195  23.099  42.101  1.00 25.00           C
ATOM     79  CA  MET    79       0.920  21.938  45.576  1.00 25.00           C
ATOM     80  CA  ASP    80       2.038  25.499  46.434  1.00 25.00           C
ATOM     81  CA  GLU    81      -1.343  26.868  45.266  1.00 25.00           C
ATOM     82  CA  GLU    82      -3.164  24.276  47.419  1.00 25.00           C
ATOM     83  CA  ARG    83      -1.029  25.252  50.444  1.00 25.00           C
ATOM     84  CA  LYS    84      -1.827  28.951  49.845  1.00 25.00           C
ATOM     85  CA  LYS    85      -5.562  28.135  49.632  1.00 25.00           C
ATOM     86  CA  TYR    86      -5.345  26.165  52.909  1.00 25.00           C
ATOM     87  CA  VAL    87      -3.563  29.109  54.589  1.00 25.00           C
ATOM     88  CA  ALA    88      -6.277  31.501  53.332  1.00 25.00           C
ATOM     89  CA  SER    89      -8.994  29.171  54.694  1.00 25.00           C
ATOM     90  CA  TYR    90      -7.214  29.034  58.082  1.00 25.00           C
ATOM     91  CA  LEU    91      -6.993  32.856  58.149  1.00 25.00           C
ATOM     92  CA  GLY    92     -10.727  33.111  57.342  1.00 25.00           C
ATOM     93  CA  VAL    93     -11.530  30.644  60.160  1.00 25.00           C
ATOM     94  CA  ILE    94      -9.394  32.691  62.593  1.00 25.00           C
ATOM     95  CA  MET    95     -11.211  35.892  61.534  1.00 25.00           C
ATOM     96  CA  ALA    96     -14.594  34.178  62.074  1.00 25.00           C
ATOM     97  CA  SER    97     -15.601  31.977  59.139  1.00 25.00           C
ATOM     98  CA  ASP    98     -14.377  29.176  56.972  1.00 25.00           C
ATOM     99  CA  GLY    99     -12.630  26.499  54.944  1.00 25.00           C
ATOM    100  CA  ASP   100     -10.527  23.971  52.979  1.00 25.00           C
ATOM    101  CA  ILE   101      -8.366  21.522  50.996  1.00 25.00           C
ATOM    102  CA  ASP   102      -5.922  19.329  48.964  1.00 25.00           C
ATOM    103  CA  ASP   103      -3.540  17.148  46.940  1.00 25.00           C
ATOM    104  CA  ASN   104       0.278  17.369  47.140  1.00 25.00           C
ATOM    105  CA  GLU   105       0.478  13.627  47.933  1.00 25.00           C
ATOM    106  CA  LEU   106      -1.788  12.847  44.946  1.00 25.00           C
ATOM    107  CA  ALA   107       0.421  15.001  42.677  1.00 25.00           C
ATOM    108  CA  LEU   108       3.542  13.175  43.939  1.00 25.00           C
ATOM    109  CA  TRP   109       1.871   9.796  43.258  1.00 25.00           C
ATOM    110  CA  THR   110       0.953  10.938  39.719  1.00 25.00           C
ATOM    111  CA  LEU   111       4.565  12.061  39.117  1.00 25.00           C
ATOM    112  CA  ILE   112       5.851   8.672  40.352  1.00 25.00           C
ATOM    113  CA  SER   113       3.414   6.867  38.012  1.00 25.00           C
ATOM    114  CA  THR   114       4.596   9.025  35.078  1.00 25.00           C
ATOM    115  CA  LEU   115       8.244   8.221  35.924  1.00 25.00           C
ATOM    116  CA  CYS   116       9.131   4.936  34.220  1.00 25.00           C
ATOM    117  CA  GLY   117       8.065   2.283  31.743  1.00 25.00           C
ATOM    118  CA  LEU   118      11.797   1.566  31.366  1.00 25.00           C
ATOM    119  CA  PRO   119      11.085  -1.779  32.998  1.00 25.00           C
ATOM    120  CA  THR   120      12.216  -1.256  36.610  1.00 25.00           C
ATOM    121  CA  MET   121      12.045   1.166  39.599  1.00 25.00           C
ATOM    122  CA  THR   122      15.076  -0.749  40.969  1.00 25.00           C
ATOM    123  CA  VAL   123      15.683  -0.413  44.735  1.00 25.00           C
ATOM    124  CA  MET   124      18.248   2.359  44.098  1.00 25.00           C
ATOM    125  CA  GLU   125      15.753   4.183  41.837  1.00 25.00           C
ATOM    126  CA  ALA   126      13.057   3.901  44.544  1.00 25.00           C
ATOM    127  CA  ILE   127      15.492   5.299  47.149  1.00 25.00           C
ATOM    128  CA  ASN   128      16.344   8.218  44.821  1.00 25.00           C
ATOM    129  CA  ASN   129      12.616   8.930  44.308  1.00 25.00           C
ATOM    130  CA  MET   130      12.061   8.886  48.097  1.00 25.00           C
ATOM    131  CA  LYS   131      14.462   9.827  50.907  1.00 25.00           C
ATOM    132  CA  ASN   132      13.673  13.458  49.925  1.00 25.00           C
TER
END
