
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  123 (  123),  selected  123 , name T0307TS393_3-D1
# Molecule2: number of CA atoms  123 (  939),  selected  123 , name T0307_D1.pdb
# PARAMETERS: T0307TS393_3-D1.T0307_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    26       103 - 128         4.98    25.25
  LCS_AVERAGE:     19.33

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    19        14 - 32          1.79    26.30
  LONGEST_CONTINUOUS_SEGMENT:    19        15 - 33          1.73    26.68
  LCS_AVERAGE:     12.71

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    17        15 - 31          0.91    26.34
  LONGEST_CONTINUOUS_SEGMENT:    17        80 - 96          0.51    45.79
  LCS_AVERAGE:     10.34

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  123
LCS_GDT     I      10     I      10      3    5   24     0    5    9   13   16   17   20   20   22   23   25   26   27   30   33   35   37   40   44   45 
LCS_GDT     M      11     M      11      3    5   24     3    3    5    9   13   17   20   20   22   23   25   26   27   30   33   35   37   40   44   45 
LCS_GDT     T      12     T      12      3    5   24     3    3    4    7    9   14   16   18   22   23   24   26   27   29   31   33   37   40   44   45 
LCS_GDT     F      13     F      13      3   18   24     3    3    4    7    8   11   16   20   22   23   24   26   27   29   31   35   37   40   44   45 
LCS_GDT     S      14     S      14      3   19   24     3    3    4    7   12   14   19   20   21   23   24   26   26   28   31   35   37   40   42   45 
LCS_GDT     G      15     G      15     17   19   24    15   16   17   17   18   19   20   20   21   23   24   26   26   30   33   35   37   40   44   45 
LCS_GDT     Q      16     Q      16     17   19   24    15   16   17   17   18   19   20   20   21   21   24   26   26   28   32   35   37   40   42   45 
LCS_GDT     E      17     E      17     17   19   24    15   16   17   17   18   19   20   20   22   23   25   26   27   30   33   35   37   40   44   45 
LCS_GDT     L      18     L      18     17   19   24    15   16   17   17   18   19   20   20   22   23   25   26   27   30   33   35   37   40   44   45 
LCS_GDT     T      19     T      19     17   19   24    15   16   17   17   18   19   20   20   21   22   24   26   27   29   33   35   37   40   44   45 
LCS_GDT     A      20     A      20     17   19   24    15   16   17   17   18   19   20   20   21   21   24   26   26   29   32   35   37   40   44   45 
LCS_GDT     I      21     I      21     17   19   24    15   16   17   17   18   19   20   20   21   22   24   26   28   29   32   37   38   40   44   45 
LCS_GDT     I      22     I      22     17   19   24    15   16   17   17   18   19   20   20   21   21   24   26   29   32   34   37   38   40   41   44 
LCS_GDT     K      23     K      23     17   19   24    15   16   17   17   18   19   20   20   21   21   24   26   26   27   29   29   31   34   36   38 
LCS_GDT     M      24     M      24     17   19   24    15   16   17   17   18   19   20   20   21   21   24   26   26   27   29   29   31   35   36   38 
LCS_GDT     A      25     A      25     17   19   24    15   16   17   17   18   19   20   20   21   21   24   26   26   27   29   29   32   37   39   41 
LCS_GDT     K      26     K      26     17   19   24    15   16   17   17   18   19   20   20   21   21   24   26   26   27   29   29   31   34   35   38 
LCS_GDT     S      27     S      27     17   19   24    15   16   17   17   18   19   20   20   21   21   24   26   26   27   29   29   31   34   35   37 
LCS_GDT     M      28     M      28     17   19   24    15   16   17   17   18   19   20   20   21   21   24   26   26   27   29   29   31   34   35   37 
LCS_GDT     V      29     V      29     17   19   24    15   16   17   17   18   19   20   20   21   21   24   26   26   27   27   28   28   30   31   33 
LCS_GDT     M      30     M      30     17   19   24     9   16   17   17   18   19   20   20   21   21   24   26   26   27   27   28   28   30   31   33 
LCS_GDT     A      31     A      31     17   19   24     0    3    3   11   18   19   20   20   21   21   24   26   26   27   27   28   28   30   31   33 
LCS_GDT     D      32     D      32      0   19   24     0    0    3    6   12   19   20   20   21   21   24   26   26   27   27   28   28   30   31   31 
LCS_GDT     G      33     G      33      4   19   24     0    4    4    6    6    7   17   19   20   21   23   23   23   27   27   28   28   30   31   31 
LCS_GDT     K      34     K      34      4    7   24     0    4    4    6    6    7    8    8    9   14   21   22   23   23   26   26   27   27   29   31 
LCS_GDT     I      35     I      35      4    7   24     1    4    4    6    6    7    8    9   10   14   18   18   19   20   21   22   23   24   25   30 
LCS_GDT     K      36     K      36      4   15   22     3    4    4    6    6   10   12   15   17   17   18   18   19   20   21   22   23   24   25   30 
LCS_GDT     P      37     P      37     15   16   22     9   12   15   15   15   15   16   16   17   17   18   18   19   20   21   22   22   24   25   26 
LCS_GDT     A      38     A      38     15   16   22     9   12   15   15   15   15   16   16   17   17   18   18   19   20   21   22   23   24   25   30 
LCS_GDT     E      39     E      39     15   16   22     9   12   15   15   15   15   16   16   17   17   18   18   19   20   21   22   23   24   25   26 
LCS_GDT     I      40     I      40     15   16   22     9   12   15   15   15   15   16   16   17   17   18   18   19   20   21   22   23   24   25   26 
LCS_GDT     A      41     A      41     15   16   22     9   12   15   15   15   15   16   16   17   17   18   18   19   20   21   22   23   24   25   30 
LCS_GDT     V      42     V      42     15   16   22     9   12   15   15   15   15   16   16   17   17   18   18   19   20   21   22   23   24   25   30 
LCS_GDT     M      43     M      43     15   16   22     9   12   15   15   15   15   16   16   17   17   18   18   19   20   21   22   23   24   25   30 
LCS_GDT     T      44     T      44     15   16   22     9   12   15   15   15   15   16   16   17   17   18   18   19   20   21   22   23   24   25   28 
LCS_GDT     R      45     R      45     15   16   22     9   12   15   15   15   15   16   16   17   17   18   18   19   20   21   22   23   26   26   30 
LCS_GDT     E      46     E      46     15   16   22     5   12   15   15   15   15   16   16   17   17   18   18   19   20   21   22   23   26   26   30 
LCS_GDT     F      47     F      47     15   16   22     9   12   15   15   15   15   16   16   17   17   18   18   19   20   21   22   23   26   26   30 
LCS_GDT     M      48     M      48     15   16   22     4   11   15   15   15   15   16   16   17   17   18   18   19   20   21   22   23   26   27   29 
LCS_GDT     R      49     R      49     15   16   22     4    5   15   15   15   15   16   16   17   17   18   18   19   20   21   24   24   26   27   29 
LCS_GDT     F      50     F      50     15   16   22     4   12   15   15   15   15   16   16   17   17   18   18   19   20   21   22   23   26   27   30 
LCS_GDT     G      51     G      51     15   16   22     4    4   15   15   15   15   16   16   17   17   18   18   19   20   21   22   23   30   32   34 
LCS_GDT     I      52     I      52      3   16   23     3    3    5   10   14   14   16   16   19   22   25   27   29   32   34   37   38   40   41   42 
LCS_GDT     L      53     L      53     13   16   23     5   10   13   15   16   16   16   17   19   22   25   27   29   32   34   37   38   40   41   42 
LCS_GDT     Q      54     Q      54     13   16   23     5   10   13   15   16   16   16   17   18   22   25   27   29   32   34   37   38   40   41   42 
LCS_GDT     D      55     D      55     13   16   23     5    9   13   15   16   16   16   17   18   19   21   27   29   32   34   37   38   40   41   42 
LCS_GDT     Q      56     Q      56     13   16   23     8   12   13   15   16   16   16   17   19   22   25   27   29   32   34   37   38   40   41   42 
LCS_GDT     V      57     V      57     13   16   23     8   12   13   15   16   16   16   17   19   22   25   27   29   32   34   37   38   40   41   42 
LCS_GDT     D      58     D      58     13   16   23     8   12   13   15   16   16   16   17   18   19   25   27   29   32   34   37   38   40   41   42 
LCS_GDT     L      59     L      59     13   16   23     8   12   13   15   16   16   16   17   18   18   20   22   29   32   34   37   38   40   41   42 
LCS_GDT     L      60     L      60     13   16   23     8   12   13   15   16   16   16   17   19   22   25   27   29   32   34   37   38   40   44   45 
LCS_GDT     L      61     L      61     13   16   23     8   12   13   15   16   16   16   17   19   22   25   27   29   32   34   37   38   40   44   45 
LCS_GDT     K      62     K      62     13   16   23     8   12   13   15   16   16   16   17   18   21   25   27   29   32   34   37   38   40   42   45 
LCS_GDT     A      63     A      63     13   16   23     8   12   13   15   16   16   16   17   18   22   25   26   27   32   34   37   38   40   44   45 
LCS_GDT     S      64     S      64     13   16   23     8   12   13   15   16   16   20   20   22   23   25   27   29   32   34   37   38   40   44   45 
LCS_GDT     D      65     D      65     13   16   23     3   12   13   15   16   16   20   20   22   23   25   27   29   32   34   37   38   40   44   45 
LCS_GDT     S      66     S      66     13   16   23     3   12   12   15   16   16   16   17   18   18   20   22   23   32   34   37   38   40   44   45 
LCS_GDT     I      67     I      67     13   16   23     3   12   12   15   16   16   16   17   18   18   21   23   25   28   33   36   38   40   44   45 
LCS_GDT     E      68     E      68     13   16   23    10   12   12   12   16   16   16   17   18   18   25   27   29   32   34   37   38   40   42   45 
LCS_GDT     A      69     A      69     12   14   23    10   12   12   12   13   13   14   17   19   22   25   27   29   32   34   37   38   40   44   45 
LCS_GDT     S      70     S      70     12   14   23    10   12   12   12   13   13   14   15   17   22   25   27   29   32   34   37   38   40   42   44 
LCS_GDT     Q      71     Q      71     12   14   23    10   12   12   12   13   13   16   17   18   18   20   22   23   25   28   33   37   38   41   42 
LCS_GDT     A      72     A      72     12   14   23    10   12   12   12   13   13   14   15   17   17   19   20   23   25   27   33   37   38   41   42 
LCS_GDT     V      73     V      73     12   14   23    10   12   12   12   13   13   14   15   17   17   19   20   23   25   28   34   37   40   41   42 
LCS_GDT     A      74     A      74     12   14   23    10   12   12   12   13   13   14   15   17   17   19   20   23   24   25   29   32   37   39   42 
LCS_GDT     L      75     L      75     12   14   24    10   12   12   12   13   13   14   15   17   17   19   20   20   22   22   25   28   29   31   32 
LCS_GDT     I      76     I      76     12   14   24    10   12   12   12   13   13   14   15   17   17   19   20   20   22   23   25   26   29   30   31 
LCS_GDT     A      77     A      77     12   14   24    10   12   12   12   13   13   14   15   17   17   19   21   21   23   23   25   28   29   31   32 
LCS_GDT     R      78     R      78     12   14   24    10   12   12   12   13   13   14   15   17   18   19   21   21   22   23   25   26   28   29   32 
LCS_GDT     M      79     M      79     12   18   24     5   12   12   12   13   13   17   18   19   19   19   21   21   22   23   25   26   26   28   29 
LCS_GDT     D      80     D      80     17   18   24     9   16   17   17   17   17   17   18   19   19   19   21   21   22   23   25   26   26   28   29 
LCS_GDT     E      81     E      81     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   21   22   23   25   26   26   28   29 
LCS_GDT     E      82     E      82     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   21   22   23   25   26   26   28   29 
LCS_GDT     R      83     R      83     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   21   22   23   25   26   26   28   29 
LCS_GDT     K      84     K      84     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   21   22   23   25   26   26   28   29 
LCS_GDT     K      85     K      85     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   21   22   23   24   26   26   28   29 
LCS_GDT     Y      86     Y      86     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   21   22   23   24   25   26   28   29 
LCS_GDT     V      87     V      87     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   21   22   23   24   25   26   28   29 
LCS_GDT     A      88     A      88     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   21   22   23   24   25   26   28   29 
LCS_GDT     S      89     S      89     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   21   22   23   24   25   26   28   29 
LCS_GDT     Y      90     Y      90     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   21   22   23   24   25   26   28   29 
LCS_GDT     L      91     L      91     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   21   22   23   24   25   26   28   29 
LCS_GDT     G      92     G      92     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   21   22   23   24   25   26   28   29 
LCS_GDT     V      93     V      93     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   21   22   23   24   25   26   28   29 
LCS_GDT     I      94     I      94     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   21   22   23   24   25   26   28   29 
LCS_GDT     M      95     M      95     17   18   24     4   14   17   17   17   17   17   18   19   19   19   21   21   22   23   24   25   26   28   29 
LCS_GDT     A      96     A      96     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   21   22   23   24   25   26   28   29 
LCS_GDT     S      97     S      97      3   18   24     0    3    3    3    6    6   14   18   19   19   19   21   21   22   23   24   25   26   28   29 
LCS_GDT     D      98     D      98      3    7   24     0    3    3    3    6    7    7    7    9   10   12   14   19   22   23   24   25   26   30   36 
LCS_GDT     G      99     G      99      4    7   24     0    4    6    6    6    7    7    8   11   12   15   18   19   21   22   24   25   29   34   36 
LCS_GDT     D     100     D     100      4    7   23     0    4    6    6    6    7    7    8   11   14   15   16   18   22   27   31   35   37   41   43 
LCS_GDT     I     101     I     101      4    7   20     1    4    6    6    6    7    7    8   13   14   15   17   19   28   29   33   37   38   44   45 
LCS_GDT     D     102     D     102      4   16   21     0    4    6   13   14   15   20   20   22   23   25   26   27   30   33   35   37   40   44   45 
LCS_GDT     D     103     D     103     14   16   26    13   13   13   14   16   17   20   20   22   23   25   26   27   30   33   35   37   40   44   45 
LCS_GDT     N     104     N     104     14   16   26    13   13   13   14   16   17   20   20   22   23   25   26   28   30   33   35   37   40   44   45 
LCS_GDT     E     105     E     105     14   16   26    13   13   13   14   16   17   20   20   22   23   25   26   28   30   33   35   37   40   44   45 
LCS_GDT     L     106     L     106     14   16   26    13   13   13   14   16   17   20   20   22   23   25   26   28   30   33   35   37   40   44   45 
LCS_GDT     A     107     A     107     14   16   26    13   13   13   14   16   17   20   20   22   23   25   26   28   30   33   35   37   40   44   45 
LCS_GDT     L     108     L     108     14   16   26    13   13   13   14   16   17   20   20   22   23   25   26   28   30   34   37   38   40   44   45 
LCS_GDT     W     109     W     109     14   16   26    13   13   13   14   16   17   20   20   22   23   25   26   28   30   34   37   38   40   44   45 
LCS_GDT     T     110     T     110     14   16   26    13   13   13   14   16   17   20   20   22   23   25   26   28   31   34   37   38   40   44   45 
LCS_GDT     L     111     L     111     14   16   26    13   13   13   14   16   17   20   20   22   23   25   26   28   32   34   37   38   40   44   45 
LCS_GDT     I     112     I     112     14   16   26    13   13   13   14   16   17   20   20   22   23   25   27   29   32   34   37   38   40   44   45 
LCS_GDT     S     113     S     113     14   16   26    13   13   13   14   16   17   20   20   22   23   25   27   29   32   34   37   38   40   44   45 
LCS_GDT     T     114     T     114     14   16   26    13   13   13   14   16   17   20   20   22   23   25   27   29   32   34   37   38   40   44   45 
LCS_GDT     L     115     L     115     14   16   26    13   13   13   14   16   17   20   20   22   23   25   27   29   32   34   37   38   40   44   45 
LCS_GDT     C     116     C     116     14   16   26     3    4    6   13   14   16   19   19   21   22   25   27   29   32   34   37   38   40   44   45 
LCS_GDT     G     117     G     117      5   16   26     3    4    6    6    9   15   16   19   20   22   25   27   29   32   34   37   38   40   44   45 
LCS_GDT     L     118     L     118      5    7   26     3    4   17   17   18   19   20   20   21   22   25   27   29   32   34   37   38   40   44   45 
LCS_GDT     P     119     P     119      5   14   26     3    4    7   14   17   18   20   20   21   22   25   27   29   32   34   37   38   40   44   45 
LCS_GDT     T     120     T     120     11   14   26     3    3    8   12   12   13   16   20   20   22   25   27   29   32   34   37   38   40   41   44 
LCS_GDT     M     121     M     121     12   14   26    10   11   11   12   12   13   14   15   19   22   25   27   29   32   34   37   38   40   42   44 
LCS_GDT     T     122     T     122     12   14   26    10   11   11   12   12   13   14   15   19   22   25   27   29   32   34   37   38   40   41   42 
LCS_GDT     V     123     V     123     12   14   26    10   11   11   12   12   13   14   15   19   22   25   27   29   32   34   37   38   40   41   42 
LCS_GDT     M     124     M     124     12   14   26    10   11   11   12   12   13   14   15   16   21   25   26   28   31   34   37   38   40   41   42 
LCS_GDT     E     125     E     125     12   14   26    10   11   11   12   12   13   14   15   16   21   25   26   28   29   32   35   36   40   41   44 
LCS_GDT     A     126     A     126     12   14   26    10   11   11   12   12   13   16   18   20   22   25   26   28   30   33   35   38   40   44   45 
LCS_GDT     I     127     I     127     12   14   26    10   11   11   12   12   13   14   18   20   22   25   26   28   29   33   35   37   40   44   45 
LCS_GDT     N     128     N     128     12   14   26    10   11   11   12   12   13   14   15   16   16   16   24   26   28   29   32   36   38   44   45 
LCS_GDT     N     129     N     129     12   14   20    10   11   11   12   12   13   14   15   16   16   20   20   24   28   30   33   37   40   44   45 
LCS_GDT     M     130     M     130     12   14   20    10   11   11   12   12   13   14   15   16   16   19   22   26   30   33   35   37   40   44   45 
LCS_GDT     K     131     K     131     12   14   20     3   11   11   12   12   13   14   15   16   16   19   23   26   30   33   35   37   40   44   45 
LCS_GDT     N     132     N     132     12   14   20     0    3    4   12   12   12   14   15   16   16   17   21   24   26   29   31   37   38   44   45 
LCS_AVERAGE  LCS_A:  14.13  (  10.34   12.71   19.33 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     15     16     17     17     18     19     20     20     22     23     25     27     29     32     34     37     38     40     44     45 
GDT PERCENT_CA  12.20  13.01  13.82  13.82  14.63  15.45  16.26  16.26  17.89  18.70  20.33  21.95  23.58  26.02  27.64  30.08  30.89  32.52  35.77  36.59
GDT RMS_LOCAL    0.29   0.33   0.50   0.50   0.98   1.30   1.50   1.50   2.82   2.97   3.57   4.04   4.26   7.22   4.91   5.25   5.38   5.75   6.50   6.45
GDT RMS_ALL_CA  26.14  26.08  26.04  26.04  26.19  26.43  26.45  26.45  25.66  25.79  24.56  26.00  26.04  25.99  25.76  25.59  25.48  25.33  25.35  26.05

#      Molecule1      Molecule2       DISTANCE
LGA    I      10      I      10         23.736
LGA    M      11      M      11         18.575
LGA    T      12      T      12         13.880
LGA    F      13      F      13          7.859
LGA    S      14      S      14          6.139
LGA    G      15      G      15          0.465
LGA    Q      16      Q      16          0.385
LGA    E      17      E      17          0.346
LGA    L      18      L      18          0.229
LGA    T      19      T      19          0.138
LGA    A      20      A      20          0.302
LGA    I      21      I      21          0.280
LGA    I      22      I      22          0.484
LGA    K      23      K      23          0.305
LGA    M      24      M      24          0.317
LGA    A      25      A      25          0.328
LGA    K      26      K      26          0.420
LGA    S      27      S      27          0.753
LGA    M      28      M      28          0.773
LGA    V      29      V      29          0.419
LGA    M      30      M      30          1.389
LGA    A      31      A      31          3.130
LGA    D      32      D      32          3.851
LGA    G      33      G      33          5.664
LGA    K      34      K      34          9.931
LGA    I      35      I      35         16.414
LGA    K      36      K      36         22.014
LGA    P      37      P      37         26.634
LGA    A      38      A      38         29.140
LGA    E      39      E      39         27.950
LGA    I      40      I      40         25.282
LGA    A      41      A      41         26.822
LGA    V      42      V      42         28.069
LGA    M      43      M      43         25.499
LGA    T      44      T      44         24.946
LGA    R      45      R      45         26.501
LGA    E      46      E      46         26.538
LGA    F      47      F      47         24.765
LGA    M      48      M      48         25.950
LGA    R      49      R      49         26.449
LGA    F      50      F      50         25.471
LGA    G      51      G      51         26.577
LGA    I      52      I      52         23.392
LGA    L      53      L      53         21.295
LGA    Q      54      Q      54         16.963
LGA    D      55      D      55         18.863
LGA    Q      56      Q      56         16.117
LGA    V      57      V      57          9.630
LGA    D      58      D      58         11.422
LGA    L      59      L      59         14.899
LGA    L      60      L      60          9.313
LGA    L      61      L      61          9.579
LGA    K      62      K      62         16.178
LGA    A      63      A      63         15.593
LGA    S      64      S      64         14.339
LGA    D      65      D      65         20.918
LGA    S      66      S      66         24.127
LGA    I      67      I      67         21.830
LGA    E      68      E      68         26.410
LGA    A      69      A      69         27.140
LGA    S      70      S      70         27.848
LGA    Q      71      Q      71         26.802
LGA    A      72      A      72         26.957
LGA    V      73      V      73         28.522
LGA    A      74      A      74         28.267
LGA    L      75      L      75         27.424
LGA    I      76      I      76         28.318
LGA    A      77      A      77         29.599
LGA    R      78      R      78         28.912
LGA    M      79      M      79         28.820
LGA    D      80      D      80         27.676
LGA    E      81      E      81         26.525
LGA    E      82      E      82         25.984
LGA    R      83      R      83         28.950
LGA    K      84      K      84         32.111
LGA    K      85      K      85         32.006
LGA    Y      86      Y      86         33.031
LGA    V      87      V      87         37.276
LGA    A      88      A      88         39.667
LGA    S      89      S      89         40.044
LGA    Y      90      Y      90         42.312
LGA    L      91      L      91         46.751
LGA    G      92      G      92         48.330
LGA    V      93      V      93         49.312
LGA    I      94      I      94         52.613
LGA    M      95      M      95         56.768
LGA    A      96      A      96         57.420
LGA    S      97      S      97         56.326
LGA    D      98      D      98         51.934
LGA    G      99      G      99         46.525
LGA    D     100      D     100         46.296
LGA    I     101      I     101         44.056
LGA    D     102      D     102         43.998
LGA    D     103      D     103         41.257
LGA    N     104      N     104         39.833
LGA    E     105      E     105         35.469
LGA    L     106      L     106         33.041
LGA    A     107      A     107         32.890
LGA    L     108      L     108         29.845
LGA    W     109      W     109         25.410
LGA    T     110      T     110         24.589
LGA    L     111      L     111         24.892
LGA    I     112      I     112         20.206
LGA    S     113      S     113         16.493
LGA    T     114      T     114         18.000
LGA    L     115      L     115         17.687
LGA    C     116      C     116         11.785
LGA    G     117      G     117         10.053
LGA    L     118      L     118          2.647
LGA    P     119      P     119          2.934
LGA    T     120      T     120          9.254
LGA    M     121      M     121         13.026
LGA    T     122      T     122         19.658
LGA    V     123      V     123         24.472
LGA    M     124      M     124         25.972
LGA    E     125      E     125         19.445
LGA    A     126      A     126         19.571
LGA    I     127      I     127         24.973
LGA    N     128      N     128         22.004
LGA    N     129      N     129         16.377
LGA    M     130      M     130         20.724
LGA    K     131      K     131         23.935
LGA    N     132      N     132         21.017

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  123  123    4.0     20    1.50    18.293    16.546     1.251

LGA_LOCAL      RMSD =  1.499  Number of atoms =   20  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 26.450  Number of atoms =  123 
Std_ALL_ATOMS  RMSD = 22.195  (standard rmsd on all 123 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.622622 * X  +   0.420316 * Y  +  -0.660058 * Z  +  15.710690
  Y_new =  -0.769610 * X  +  -0.481514 * Y  +   0.419338 * Z  +  14.548903
  Z_new =  -0.141573 * X  +   0.769076 * Y  +   0.623281 * Z  +  32.947025 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   0.889729   -2.251864  [ DEG:    50.9777   -129.0223 ]
  Theta =   0.142050    2.999543  [ DEG:     8.1389    171.8611 ]
  Phi   =  -2.251007    0.890586  [ DEG:  -128.9732     51.0268 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0307TS393_3-D1                               
REMARK     2: T0307_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0307TS393_3-D1.T0307_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  123  123   4.0   20   1.50  16.546    22.19
REMARK  ---------------------------------------------------------- 
MOLECULE T0307TS393_3-D1
PFRMAT TS
TARGET T0307
MODEL 3
PARENT N/A
ATOM     10  CA  ILE    10      28.567   9.597  48.419  1.00 25.00           C
ATOM     11  CA  MET    11      25.895  12.244  48.085  1.00 25.00           C
ATOM     12  CA  THR    12      25.655  15.855  46.806  1.00 25.00           C
ATOM     13  CA  PHE    13      22.888  16.742  44.266  1.00 25.00           C
ATOM     14  CA  SER    14      25.410  18.614  42.051  1.00 25.00           C
ATOM     15  CA  GLY    15      23.155  17.263  39.261  1.00 25.00           C
ATOM     16  CA  GLN    16      24.805  13.831  39.673  1.00 25.00           C
ATOM     17  CA  GLU    17      21.677  12.131  38.262  1.00 25.00           C
ATOM     18  CA  LEU    18      21.695  14.524  35.272  1.00 25.00           C
ATOM     19  CA  THR    19      25.398  13.765  34.655  1.00 25.00           C
ATOM     20  CA  ALA    20      24.675  10.007  34.792  1.00 25.00           C
ATOM     21  CA  ILE    21      21.805  10.443  32.295  1.00 25.00           C
ATOM     22  CA  ILE    22      24.106  12.420  29.958  1.00 25.00           C
ATOM     23  CA  LYS    23      26.759   9.669  30.200  1.00 25.00           C
ATOM     24  CA  MET    24      24.118   7.018  29.386  1.00 25.00           C
ATOM     25  CA  ALA    25      22.964   9.061  26.359  1.00 25.00           C
ATOM     26  CA  LYS    26      26.588   9.374  25.158  1.00 25.00           C
ATOM     27  CA  SER    27      27.064   5.593  25.535  1.00 25.00           C
ATOM     28  CA  MET    28      23.857   4.965  23.539  1.00 25.00           C
ATOM     29  CA  VAL    29      25.075   7.336  20.788  1.00 25.00           C
ATOM     30  CA  MET    30      28.441   5.511  20.673  1.00 25.00           C
ATOM     31  CA  ALA    31      29.464   3.918  17.399  1.00 25.00           C
ATOM     32  CA  ASP    32      32.002   3.284  14.628  1.00 25.00           C
ATOM     33  CA  GLY    33      34.520   2.909  11.769  1.00 25.00           C
ATOM     34  CA  LYS    34      37.157   2.633   9.048  1.00 25.00           C
ATOM     35  CA  ILE    35      39.968   2.137   6.480  1.00 25.00           C
ATOM     36  CA  LYS    36      43.222   2.940   4.652  1.00 25.00           C
ATOM     37  CA  PRO    37      46.648   4.482   4.074  1.00 25.00           C
ATOM     38  CA  ALA    38      47.095   4.147   7.863  1.00 25.00           C
ATOM     39  CA  GLU    39      47.045   7.958   8.231  1.00 25.00           C
ATOM     40  CA  ILE    40      43.842   8.142   6.140  1.00 25.00           C
ATOM     41  CA  ALA    41      42.232   5.440   8.323  1.00 25.00           C
ATOM     42  CA  VAL    42      43.220   7.367  11.481  1.00 25.00           C
ATOM     43  CA  MET    43      41.714  10.573  10.026  1.00 25.00           C
ATOM     44  CA  THR    44      38.475   8.704   9.198  1.00 25.00           C
ATOM     45  CA  ARG    45      38.333   7.319  12.766  1.00 25.00           C
ATOM     46  CA  GLU    46      38.848  10.842  14.180  1.00 25.00           C
ATOM     47  CA  PHE    47      36.038  12.175  11.946  1.00 25.00           C
ATOM     48  CA  MET    48      33.725   9.363  13.133  1.00 25.00           C
ATOM     49  CA  ARG    49      34.566  10.178  16.780  1.00 25.00           C
ATOM     50  CA  PHE    50      33.812  13.880  16.151  1.00 25.00           C
ATOM     51  CA  GLY    51      30.460  12.951  14.549  1.00 25.00           C
ATOM     52  CA  ILE    52      29.604  10.744  17.559  1.00 25.00           C
ATOM     53  CA  LEU    53      30.480  13.611  19.941  1.00 25.00           C
ATOM     54  CA  GLN    54      28.259  15.996  17.928  1.00 25.00           C
ATOM     55  CA  ASP    55      25.381  13.472  18.070  1.00 25.00           C
ATOM     56  CA  GLN    56      25.829  13.138  21.859  1.00 25.00           C
ATOM     57  CA  VAL    57      25.778  16.949  22.227  1.00 25.00           C
ATOM     58  CA  ASP    58      22.574  17.133  20.135  1.00 25.00           C
ATOM     59  CA  LEU    59      20.965  14.430  22.319  1.00 25.00           C
ATOM     60  CA  LEU    60      21.953  16.357  25.477  1.00 25.00           C
ATOM     61  CA  LEU    61      20.446  19.563  24.022  1.00 25.00           C
ATOM     62  CA  LYS    62      17.208  17.694  23.194  1.00 25.00           C
ATOM     63  CA  ALA    63      17.066  16.310  26.762  1.00 25.00           C
ATOM     64  CA  SER    64      17.581  19.832  28.175  1.00 25.00           C
ATOM     65  CA  ASP    65      14.770  21.166  25.942  1.00 25.00           C
ATOM     66  CA  SER    66      12.458  18.353  27.129  1.00 25.00           C
ATOM     67  CA  ILE    67      13.299  19.168  30.776  1.00 25.00           C
ATOM     68  CA  GLU    68      12.545  22.871  30.147  1.00 25.00           C
ATOM     69  CA  ALA    69       9.194  21.942  28.543  1.00 25.00           C
ATOM     70  CA  SER    70       8.338  19.734  31.554  1.00 25.00           C
ATOM     71  CA  GLN    71       9.213  22.603  33.937  1.00 25.00           C
ATOM     72  CA  ALA    72       6.992  24.986  31.924  1.00 25.00           C
ATOM     73  CA  VAL    73       4.114  22.463  32.066  1.00 25.00           C
ATOM     74  CA  ALA    74       4.561  22.129  35.855  1.00 25.00           C
ATOM     75  CA  LEU    75       4.510  25.940  36.222  1.00 25.00           C
ATOM     76  CA  ILE    76       1.308  26.124  34.130  1.00 25.00           C
ATOM     77  CA  ALA    77      -0.303  23.420  36.315  1.00 25.00           C
ATOM     78  CA  ARG    78       0.687  25.348  39.473  1.00 25.00           C
ATOM     79  CA  MET    79      -0.820  28.554  38.017  1.00 25.00           C
ATOM     80  CA  ASP    80      -4.059  26.686  37.189  1.00 25.00           C
ATOM     81  CA  GLU    81      -4.201  25.301  40.758  1.00 25.00           C
ATOM     82  CA  GLU    82      -3.687  28.823  42.171  1.00 25.00           C
ATOM     83  CA  ARG    83      -6.497  30.156  39.938  1.00 25.00           C
ATOM     84  CA  LYS    84      -8.809  27.343  41.125  1.00 25.00           C
ATOM     85  CA  LYS    85      -7.968  28.160  44.771  1.00 25.00           C
ATOM     86  CA  TYR    86      -8.721  31.862  44.142  1.00 25.00           C
ATOM     87  CA  VAL    87     -12.073  30.933  42.539  1.00 25.00           C
ATOM     88  CA  ALA    88     -12.929  28.725  45.550  1.00 25.00           C
ATOM     89  CA  SER    89     -12.054  31.593  47.933  1.00 25.00           C
ATOM     90  CA  TYR    90     -14.276  33.977  45.919  1.00 25.00           C
ATOM     91  CA  LEU    91     -17.153  31.454  46.062  1.00 25.00           C
ATOM     92  CA  GLY    92     -16.706  31.118  49.850  1.00 25.00           C
ATOM     93  CA  VAL    93     -16.757  34.931  50.218  1.00 25.00           C
ATOM     94  CA  ILE    94     -19.959  35.114  48.126  1.00 25.00           C
ATOM     95  CA  MET    95     -21.570  32.410  50.311  1.00 25.00           C
ATOM     96  CA  ALA    96     -20.581  34.339  53.468  1.00 25.00           C
ATOM     97  CA  SER    97     -18.344  31.344  53.842  1.00 25.00           C
ATOM     98  CA  ASP    98     -15.876  28.618  53.020  1.00 25.00           C
ATOM     99  CA  GLY    99     -13.261  26.353  51.437  1.00 25.00           C
ATOM    100  CA  ASP   100     -10.515  24.200  49.920  1.00 25.00           C
ATOM    101  CA  ILE   101      -8.079  21.878  48.249  1.00 25.00           C
ATOM    102  CA  ASP   102      -5.373  20.003  46.261  1.00 25.00           C
ATOM    103  CA  ASP   103      -2.816  18.103  44.136  1.00 25.00           C
ATOM    104  CA  ASN   104      -0.412  19.626  41.574  1.00 25.00           C
ATOM    105  CA  GLU   105       2.573  18.121  43.442  1.00 25.00           C
ATOM    106  CA  LEU   106       0.858  14.696  43.473  1.00 25.00           C
ATOM    107  CA  ALA   107       0.194  14.968  39.710  1.00 25.00           C
ATOM    108  CA  LEU   108       3.866  15.874  39.103  1.00 25.00           C
ATOM    109  CA  TRP   109       4.980  12.864  41.193  1.00 25.00           C
ATOM    110  CA  THR   110       2.648  10.580  39.191  1.00 25.00           C
ATOM    111  CA  LEU   111       4.068  11.959  35.914  1.00 25.00           C
ATOM    112  CA  ILE   112       7.633  11.341  37.171  1.00 25.00           C
ATOM    113  CA  SER   113       6.699   7.752  38.129  1.00 25.00           C
ATOM    114  CA  THR   114       5.184   7.193  34.656  1.00 25.00           C
ATOM    115  CA  LEU   115       8.370   8.552  33.021  1.00 25.00           C
ATOM    116  CA  CYS   116      10.058   5.506  31.385  1.00 25.00           C
ATOM    117  CA  GLY   117       9.336   2.236  29.643  1.00 25.00           C
ATOM    118  CA  LEU   118      12.316   1.007  31.766  1.00 25.00           C
ATOM    119  CA  PRO   119      11.040  -1.806  34.040  1.00 25.00           C
ATOM    120  CA  THR   120      13.829  -1.821  36.542  1.00 25.00           C
ATOM    121  CA  MET   121      12.414   1.463  37.958  1.00 25.00           C
ATOM    122  CA  THR   122      15.656   1.569  39.942  1.00 25.00           C
ATOM    123  CA  VAL   123      16.035   2.120  43.714  1.00 25.00           C
ATOM    124  CA  MET   124      17.662   5.529  43.077  1.00 25.00           C
ATOM    125  CA  GLU   125      14.793   6.486  40.727  1.00 25.00           C
ATOM    126  CA  ALA   126      12.238   5.439  43.380  1.00 25.00           C
ATOM    127  CA  ILE   127      14.070   7.538  46.008  1.00 25.00           C
ATOM    128  CA  ASN   128      14.064  10.550  43.642  1.00 25.00           C
ATOM    129  CA  ASN   129      10.310  10.098  43.037  1.00 25.00           C
ATOM    130  CA  MET   130       9.695   9.937  46.813  1.00 25.00           C
ATOM    131  CA  LYS   131      12.164  12.674  47.752  1.00 25.00           C
ATOM    132  CA  ASN   132      11.720  16.350  47.173  1.00 25.00           C
TER
END
