
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  123 (  123),  selected  123 , name T0307TS393_5-D1
# Molecule2: number of CA atoms  123 (  939),  selected  123 , name T0307_D1.pdb
# PARAMETERS: T0307TS393_5-D1.T0307_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    25        10 - 34          4.60    32.23
  LCS_AVERAGE:     18.90

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    20        14 - 33          1.84    26.34
  LCS_AVERAGE:     12.74

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    17        14 - 30          0.65    25.81
  LONGEST_CONTINUOUS_SEGMENT:    17        15 - 31          0.86    26.21
  LONGEST_CONTINUOUS_SEGMENT:    17        80 - 96          0.51    45.85
  LCS_AVERAGE:     10.39

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  123
LCS_GDT     I      10     I      10      3    6   25     3    3    4   10   14   15   17   19   19   22   25   25   26   28   32   35   37   41   43   46 
LCS_GDT     M      11     M      11      4    6   25     3    3    4    5    7   11   14   19   21   22   25   25   26   28   31   35   37   41   43   46 
LCS_GDT     T      12     T      12      4    6   25     3    3    4    5    8    9   14   19   21   22   25   25   26   29   29   32   37   41   43   46 
LCS_GDT     F      13     F      13      4   19   25     3    3    4    5   10   14   18   19   21   22   25   25   26   29   29   34   37   41   43   46 
LCS_GDT     S      14     S      14     17   20   25     3    4   14   17   18   19   20   21   21   22   25   25   26   29   29   34   35   38   43   44 
LCS_GDT     G      15     G      15     17   20   25    15   16   16   17   18   19   20   21   21   22   25   25   26   29   31   35   37   41   43   46 
LCS_GDT     Q      16     Q      16     17   20   25    15   16   16   17   18   19   20   21   21   22   25   25   26   27   28   32   37   41   43   46 
LCS_GDT     E      17     E      17     17   20   25    15   16   16   17   18   19   20   21   21   22   25   25   26   29   32   35   37   41   43   46 
LCS_GDT     L      18     L      18     17   20   25    15   16   16   17   18   19   20   21   21   22   25   25   27   29   32   35   37   41   43   46 
LCS_GDT     T      19     T      19     17   20   25    15   16   16   17   18   19   20   21   21   22   25   25   26   29   32   35   37   41   43   46 
LCS_GDT     A      20     A      20     17   20   25    15   16   16   17   18   19   20   21   21   22   25   25   26   29   29   32   37   41   41   46 
LCS_GDT     I      21     I      21     17   20   25    15   16   16   17   18   19   20   21   21   22   25   25   27   29   32   35   37   41   43   46 
LCS_GDT     I      22     I      22     17   20   25    15   16   16   17   18   19   20   21   21   22   25   25   26   29   30   35   38   39   42   43 
LCS_GDT     K      23     K      23     17   20   25    15   16   16   17   18   19   20   21   21   22   25   25   26   29   29   30   31   34   36   36 
LCS_GDT     M      24     M      24     17   20   25    15   16   16   17   18   19   20   21   21   22   25   25   26   29   29   30   31   34   36   38 
LCS_GDT     A      25     A      25     17   20   25    15   16   16   17   18   19   20   21   21   22   25   25   26   29   29   30   32   34   40   42 
LCS_GDT     K      26     K      26     17   20   25    15   16   16   17   18   19   20   21   21   22   25   25   26   29   29   30   31   34   36   38 
LCS_GDT     S      27     S      27     17   20   25    15   16   16   17   18   19   20   21   21   22   25   25   26   29   29   30   31   34   36   36 
LCS_GDT     M      28     M      28     17   20   25    15   16   16   17   18   19   20   21   21   22   25   25   26   29   29   30   31   34   36   36 
LCS_GDT     V      29     V      29     17   20   25    15   16   16   17   18   19   20   21   21   22   25   25   26   27   27   28   28   34   36   36 
LCS_GDT     M      30     M      30     17   20   25     4   16   16   17   18   19   20   21   21   22   25   25   26   27   27   28   28   34   36   36 
LCS_GDT     A      31     A      31     17   20   25     0    3    3   13   18   19   20   21   21   22   25   25   26   27   27   28   28   30   31   32 
LCS_GDT     D      32     D      32      0   20   25     0    0    3    4   11   19   20   21   21   22   25   25   26   27   27   28   28   30   31   32 
LCS_GDT     G      33     G      33      4   20   25     0    3    4    6    6    7    8   20   21   22   23   25   25   27   27   28   28   30   31   32 
LCS_GDT     K      34     K      34      4    7   25     0    3    4    6    6    7    8    8    9   11   18   22   23   24   26   28   28   30   31   31 
LCS_GDT     I      35     I      35      4    7   23     1    3    4    6    6    7    8    8    9   14   16   18   19   20   21   22   23   23   24   26 
LCS_GDT     K      36     K      36      4   15   22     3    3    4    6    6   11   12   15   17   17   18   18   19   20   21   22   23   23   24   26 
LCS_GDT     P      37     P      37     15   16   22     9   12   15   15   15   15   16   16   17   17   18   18   19   20   21   22   22   23   24   25 
LCS_GDT     A      38     A      38     15   16   22     9   12   15   15   15   15   16   16   17   17   18   18   19   20   21   22   23   23   24   26 
LCS_GDT     E      39     E      39     15   16   22     9   12   15   15   15   15   16   16   17   17   18   18   19   20   21   22   23   23   24   25 
LCS_GDT     I      40     I      40     15   16   22     9   12   15   15   15   15   16   16   17   17   18   18   19   20   21   22   23   23   24   25 
LCS_GDT     A      41     A      41     15   16   22     9   12   15   15   15   15   16   16   17   17   18   18   19   20   21   22   23   23   24   26 
LCS_GDT     V      42     V      42     15   16   22     9   12   15   15   15   15   16   16   17   17   18   18   19   20   21   22   23   23   24   26 
LCS_GDT     M      43     M      43     15   16   22     9   12   15   15   15   15   16   16   17   17   18   18   19   20   21   22   23   23   24   25 
LCS_GDT     T      44     T      44     15   16   22     9   12   15   15   15   15   16   16   17   17   18   18   19   20   21   22   23   23   24   25 
LCS_GDT     R      45     R      45     15   16   22     9   12   15   15   15   15   16   16   17   17   18   18   19   20   21   22   23   25   30   33 
LCS_GDT     E      46     E      46     15   16   22     5   12   15   15   15   15   16   16   17   17   18   18   19   20   21   22   23   25   26   28 
LCS_GDT     F      47     F      47     15   16   22     9   12   15   15   15   15   16   16   17   17   18   18   19   20   21   22   23   25   26   28 
LCS_GDT     M      48     M      48     15   16   22     4   11   15   15   15   15   16   16   17   17   18   18   19   20   21   22   24   31   32   38 
LCS_GDT     R      49     R      49     15   16   22     4    5   15   15   15   15   16   16   17   17   18   18   19   20   21   22   23   26   30   33 
LCS_GDT     F      50     F      50     15   16   22     4   12   15   15   15   15   16   16   17   17   18   18   19   20   21   22   23   23   24   28 
LCS_GDT     G      51     G      51     15   16   22     4    4   15   15   15   15   16   16   17   17   18   19   20   24   26   28   29   31   33   38 
LCS_GDT     I      52     I      52      3   16   23     3    3    5    9   14   15   16   16   17   17   19   21   26   32   33   35   38   39   42   43 
LCS_GDT     L      53     L      53     13   16   23     5   10   13   15   16   16   16   17   18   18   19   21   27   32   33   35   38   39   42   43 
LCS_GDT     Q      54     Q      54     13   16   23     5   10   13   15   16   16   16   17   18   18   19   20   22   25   32   35   38   39   41   43 
LCS_GDT     D      55     D      55     13   16   23     5    9   13   15   16   16   16   17   18   18   19   21   25   31   32   35   38   39   41   43 
LCS_GDT     Q      56     Q      56     13   16   23     8   12   13   15   16   16   16   17   18   18   20   21   27   32   33   35   38   39   42   43 
LCS_GDT     V      57     V      57     13   16   23     8   12   13   15   16   16   16   17   18   18   20   21   27   32   33   35   38   39   42   43 
LCS_GDT     D      58     D      58     13   16   23     8   12   13   15   16   16   16   17   18   18   19   21   27   32   33   35   38   39   42   43 
LCS_GDT     L      59     L      59     13   16   23     8   12   13   15   16   16   16   17   18   18   19   21   24   32   33   35   38   39   42   43 
LCS_GDT     L      60     L      60     13   16   23     8   12   13   15   16   16   16   17   18   18   21   23   27   32   33   35   38   39   42   43 
LCS_GDT     L      61     L      61     13   16   23     8   12   13   15   16   16   16   17   18   18   21   22   27   32   33   35   38   39   42   43 
LCS_GDT     K      62     K      62     13   16   23     8   12   13   15   16   16   16   17   18   22   25   25   27   32   33   35   38   39   42   43 
LCS_GDT     A      63     A      63     13   16   23     8   12   13   15   16   16   16   17   18   22   25   25   26   27   32   35   38   39   42   43 
LCS_GDT     S      64     S      64     13   16   23     8   12   13   15   16   16   17   18   19   20   22   25   27   32   33   35   38   41   43   46 
LCS_GDT     D      65     D      65     13   16   23     3   12   13   15   16   16   16   17   19   19   22   23   27   32   33   35   38   41   43   46 
LCS_GDT     S      66     S      66     13   16   23     3   12   12   15   16   16   16   17   18   18   19   20   22   25   25   28   31   39   42   43 
LCS_GDT     I      67     I      67     13   16   23     3   12   12   15   16   16   16   17   18   18   19   21   24   26   29   35   38   41   43   46 
LCS_GDT     E      68     E      68     13   16   23    10   12   12   12   16   16   16   17   18   18   21   24   27   31   32   35   38   41   43   46 
LCS_GDT     A      69     A      69     12   14   23    10   12   12   12   13   13   14   17   18   18   22   25   27   32   33   35   38   41   43   46 
LCS_GDT     S      70     S      70     12   14   23    10   12   12   12   13   13   14   15   17   18   19   22   25   31   32   35   38   39   43   46 
LCS_GDT     Q      71     Q      71     12   14   23    10   12   12   12   13   13   16   17   18   18   19   21   24   26   29   34   36   38   41   43 
LCS_GDT     A      72     A      72     12   14   23    10   12   12   12   13   13   14   15   17   17   19   21   24   26   29   34   36   39   41   43 
LCS_GDT     V      73     V      73     12   14   23    10   12   12   12   13   13   14   15   17   17   19   21   24   26   29   35   38   39   41   43 
LCS_GDT     A      74     A      74     12   14   23    10   12   12   12   13   13   14   15   17   17   19   20   24   25   28   32   33   34   40   42 
LCS_GDT     L      75     L      75     12   14   24    10   12   12   12   13   13   14   15   17   17   19   19   22   23   23   25   29   32   34   37 
LCS_GDT     I      76     I      76     12   14   24    10   12   12   12   13   13   14   15   17   17   19   19   22   23   23   25   27   30   31   35 
LCS_GDT     A      77     A      77     12   14   24    10   12   12   12   13   13   14   15   17   17   19   20   22   23   25   28   30   32   34   37 
LCS_GDT     R      78     R      78     12   14   24    10   12   12   12   13   13   14   15   17   18   19   20   22   23   23   25   27   28   31   35 
LCS_GDT     M      79     M      79     12   18   24     5   12   12   12   13   13   17   18   19   19   19   20   22   23   23   25   27   28   28   30 
LCS_GDT     D      80     D      80     17   18   24     9   16   17   17   17   17   17   18   19   19   19   20   22   23   23   25   27   28   28   31 
LCS_GDT     E      81     E      81     17   18   24    14   16   17   17   17   17   17   18   19   19   19   20   22   23   23   25   27   28   28   30 
LCS_GDT     E      82     E      82     17   18   24    14   16   17   17   17   17   17   18   19   19   19   20   22   23   23   25   27   28   28   30 
LCS_GDT     R      83     R      83     17   18   24    14   16   17   17   17   17   17   18   19   19   19   20   22   23   23   25   27   28   28   30 
LCS_GDT     K      84     K      84     17   18   24    14   16   17   17   17   17   17   18   19   19   19   20   21   22   23   25   27   28   28   30 
LCS_GDT     K      85     K      85     17   18   24    14   16   17   17   17   17   17   18   19   19   19   20   21   22   23   25   27   28   28   30 
LCS_GDT     Y      86     Y      86     17   18   24    14   16   17   17   17   17   17   18   19   19   19   20   21   22   23   24   25   26   27   29 
LCS_GDT     V      87     V      87     17   18   24    14   16   17   17   17   17   17   18   19   19   19   20   21   22   23   24   25   26   27   29 
LCS_GDT     A      88     A      88     17   18   24    14   16   17   17   17   17   17   18   19   19   19   20   21   22   23   24   25   26   27   29 
LCS_GDT     S      89     S      89     17   18   24    14   16   17   17   17   17   17   18   19   19   19   20   21   22   23   24   25   26   27   29 
LCS_GDT     Y      90     Y      90     17   18   24    14   16   17   17   17   17   17   18   19   19   19   20   21   22   23   24   25   26   27   29 
LCS_GDT     L      91     L      91     17   18   24    14   16   17   17   17   17   17   18   19   19   19   20   21   22   23   24   25   26   27   29 
LCS_GDT     G      92     G      92     17   18   24    14   16   17   17   17   17   17   18   19   19   19   20   21   22   23   24   25   26   27   29 
LCS_GDT     V      93     V      93     17   18   24    14   16   17   17   17   17   17   18   19   19   19   20   21   22   23   24   25   26   27   29 
LCS_GDT     I      94     I      94     17   18   24    14   16   17   17   17   17   17   18   19   19   19   20   21   22   23   24   25   26   27   29 
LCS_GDT     M      95     M      95     17   18   24     4   14   17   17   17   17   17   18   19   19   19   20   21   22   23   24   25   26   27   29 
LCS_GDT     A      96     A      96     17   18   24    14   16   17   17   17   17   17   18   19   19   19   20   21   22   23   24   25   26   27   29 
LCS_GDT     S      97     S      97      3   18   24     0    3    3    4    6    9   15   18   19   19   19   20   21   22   23   24   25   26   27   29 
LCS_GDT     D      98     D      98      3    7   24     0    3    3    3    6    7    7    7    9   10   12   16   19   22   23   24   25   26   31   36 
LCS_GDT     G      99     G      99      4    7   24     0    3    6    6    6    7    7    7   11   11   13   17   19   21   22   24   25   30   33   36 
LCS_GDT     D     100     D     100      4    7   23     0    3    6    6    6    7    7    9   11   14   16   16   17   21   25   29   32   37   38   40 
LCS_GDT     I     101     I     101      4    7   19     1    3    6    6    6    7    7    9   13   14   16   16   17   25   27   29   33   37   41   43 
LCS_GDT     D     102     D     102     14   16   19     0    3    6   13   14   14   17   19   19   20   22   23   25   28   32   35   37   41   41   46 
LCS_GDT     D     103     D     103     14   16   19    13   13   13   13   14   15   17   19   19   20   22   25   27   28   32   35   37   41   41   46 
LCS_GDT     N     104     N     104     14   16   23    13   13   13   13   14   15   17   19   19   20   22   25   27   32   33   35   37   41   42   46 
LCS_GDT     E     105     E     105     14   16   23    13   13   13   13   14   15   17   19   19   20   22   25   27   32   33   35   37   41   43   46 
LCS_GDT     L     106     L     106     14   16   23    13   13   13   13   14   15   17   19   19   20   22   25   27   29   33   35   37   41   43   46 
LCS_GDT     A     107     A     107     14   16   23    13   13   13   13   14   15   17   19   19   20   22   25   27   32   33   35   37   41   43   46 
LCS_GDT     L     108     L     108     14   16   23    13   13   13   13   14   15   17   19   19   20   22   25   27   32   33   35   38   41   43   46 
LCS_GDT     W     109     W     109     14   16   23    13   13   13   13   14   15   17   19   19   20   22   25   27   32   33   35   38   41   43   46 
LCS_GDT     T     110     T     110     14   16   23    13   13   13   13   14   15   17   19   19   20   22   25   27   32   33   35   38   41   43   46 
LCS_GDT     L     111     L     111     14   16   23    13   13   13   13   14   15   17   19   19   20   22   25   27   32   33   35   38   41   43   46 
LCS_GDT     I     112     I     112     14   16   23    13   13   13   13   14   15   17   19   19   20   22   25   27   32   33   35   38   41   43   46 
LCS_GDT     S     113     S     113     14   16   23    13   13   13   13   14   15   17   19   19   20   22   25   27   32   33   35   38   41   43   46 
LCS_GDT     T     114     T     114     14   16   23    13   13   13   13   14   15   17   19   19   20   22   25   27   32   33   35   38   41   43   46 
LCS_GDT     L     115     L     115     14   16   23    13   13   13   13   14   15   17   19   19   20   22   25   27   31   32   35   38   41   43   46 
LCS_GDT     C     116     C     116      4   16   23     3    3    4   10   14   14   15   17   19   20   22   25   27   32   33   35   38   41   43   46 
LCS_GDT     G     117     G     117      4   16   23     3    4    5    6    6   14   15   17   20   20   22   25   27   32   33   35   38   41   43   46 
LCS_GDT     L     118     L     118      4    6   23     3    4    5    6   17   19   19   21   21   22   23   25   27   32   33   35   38   41   43   46 
LCS_GDT     P     119     P     119      4    9   23     3   11   16   17   18   19   20   21   21   22   23   25   27   32   33   35   38   41   43   46 
LCS_GDT     T     120     T     120      4   13   23     1    4    8    9   12   18   19   20   21   21   23   23   24   26   29   32   34   39   43   46 
LCS_GDT     M     121     M     121     12   13   23     4   11   12   12   12   14   14   15   16   16   20   22   26   32   33   35   38   39   43   46 
LCS_GDT     T     122     T     122     12   13   23    10   11   12   12   12   14   14   15   16   16   20   22   26   32   33   35   38   39   42   43 
LCS_GDT     V     123     V     123     12   13   23    10   11   12   12   12   14   14   15   16   17   20   22   27   32   33   35   38   39   43   46 
LCS_GDT     M     124     M     124     12   13   23    10   11   12   12   12   14   14   15   16   18   22   24   27   32   33   35   38   39   43   46 
LCS_GDT     E     125     E     125     12   13   23    10   11   12   12   12   14   14   15   16   18   22   25   27   32   33   35   38   39   43   46 
LCS_GDT     A     126     A     126     12   13   23    10   11   12   12   12   14   14   15   16   18   22   25   27   32   33   35   38   41   43   46 
LCS_GDT     I     127     I     127     12   13   21    10   11   12   12   12   14   14   15   16   17   21   25   27   29   32   35   37   41   43   46 
LCS_GDT     N     128     N     128     12   13   20    10   11   12   12   12   14   14   15   16   18   21   25   27   29   32   35   37   41   43   46 
LCS_GDT     N     129     N     129     12   13   20    10   11   12   12   12   14   14   15   16   16   18   20   26   29   32   35   37   41   43   46 
LCS_GDT     M     130     M     130     12   13   20    10   11   12   12   12   14   14   15   16   16   18   20   26   29   32   35   37   41   43   46 
LCS_GDT     K     131     K     131     12   13   20    10   11   12   12   12   14   14   15   16   16   16   18   26   29   32   35   37   41   43   46 
LCS_GDT     N     132     N     132     12   13   20     3   11   12   12   12   14   14   15   16   16   18   20   26   29   29   31   33   41   41   43 
LCS_AVERAGE  LCS_A:  14.01  (  10.39   12.74   18.90 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     15     16     17     17     18     19     20     21     21     22     25     25     27     32     33     35     38     41     43     46 
GDT PERCENT_CA  12.20  13.01  13.82  13.82  14.63  15.45  16.26  17.07  17.07  17.89  20.33  20.33  21.95  26.02  26.83  28.46  30.89  33.33  34.96  37.40
GDT RMS_LOCAL    0.29   0.33   0.51   0.51   0.84   1.09   1.36   1.71   1.67   2.06   7.35   3.92   4.56   5.22   5.30   5.51   5.87   6.35   6.95   7.06
GDT RMS_ALL_CA  25.99  25.93  45.85  45.85  26.01  26.14  26.33  26.30  26.33  26.33  32.20  32.32  25.74  24.94  24.90  25.25  25.12  26.49  27.59  27.05

#      Molecule1      Molecule2       DISTANCE
LGA    I      10      I      10         24.960
LGA    M      11      M      11         19.350
LGA    T      12      T      12         15.484
LGA    F      13      F      13          9.205
LGA    S      14      S      14          3.584
LGA    G      15      G      15          0.863
LGA    Q      16      Q      16          1.050
LGA    E      17      E      17          1.135
LGA    L      18      L      18          1.037
LGA    T      19      T      19          0.852
LGA    A      20      A      20          0.986
LGA    I      21      I      21          1.217
LGA    I      22      I      22          1.187
LGA    K      23      K      23          0.797
LGA    M      24      M      24          1.062
LGA    A      25      A      25          1.492
LGA    K      26      K      26          1.293
LGA    S      27      S      27          1.128
LGA    M      28      M      28          1.593
LGA    V      29      V      29          1.753
LGA    M      30      M      30          1.726
LGA    A      31      A      31          2.933
LGA    D      32      D      32          3.053
LGA    G      33      G      33          5.110
LGA    K      34      K      34          8.741
LGA    I      35      I      35         15.082
LGA    K      36      K      36         19.929
LGA    P      37      P      37         24.494
LGA    A      38      A      38         26.364
LGA    E      39      E      39         25.354
LGA    I      40      I      40         23.636
LGA    A      41      A      41         24.995
LGA    V      42      V      42         25.736
LGA    M      43      M      43         23.800
LGA    T      44      T      44         23.928
LGA    R      45      R      45         24.857
LGA    E      46      E      46         24.587
LGA    F      47      F      47         23.687
LGA    M      48      M      48         25.061
LGA    R      49      R      49         25.085
LGA    F      50      F      50         24.485
LGA    G      51      G      51         25.914
LGA    I      52      I      52         23.078
LGA    L      53      L      53         20.752
LGA    Q      54      Q      54         17.166
LGA    D      55      D      55         20.133
LGA    Q      56      Q      56         16.733
LGA    V      57      V      57         10.880
LGA    D      58      D      58         14.451
LGA    L      59      L      59         16.833
LGA    L      60      L      60         11.168
LGA    L      61      L      61         12.547
LGA    K      62      K      62         18.742
LGA    A      63      A      63         16.971
LGA    S      64      S      64         16.135
LGA    D      65      D      65         22.959
LGA    S      66      S      66         25.172
LGA    I      67      I      67         22.464
LGA    E      68      E      68         27.266
LGA    A      69      A      69         27.171
LGA    S      70      S      70         27.135
LGA    Q      71      Q      71         26.683
LGA    A      72      A      72         26.790
LGA    V      73      V      73         27.314
LGA    A      74      A      74         27.006
LGA    L      75      L      75         26.739
LGA    I      76      I      76         26.983
LGA    A      77      A      77         27.605
LGA    R      78      R      78         27.257
LGA    M      79      M      79         27.088
LGA    D      80      D      80         24.841
LGA    E      81      E      81         24.391
LGA    E      82      E      82         24.436
LGA    R      83      R      83         27.449
LGA    K      84      K      84         30.632
LGA    K      85      K      85         31.288
LGA    Y      86      Y      86         32.536
LGA    V      87      V      87         36.777
LGA    A      88      A      88         39.370
LGA    S      89      S      89         40.224
LGA    Y      90      Y      90         42.632
LGA    L      91      L      91         47.054
LGA    G      92      G      92         48.931
LGA    V      93      V      93         50.159
LGA    I      94      I      94         53.667
LGA    M      95      M      95         57.992
LGA    A      96      A      96         58.744
LGA    S      97      S      97         58.495
LGA    D      98      D      98         54.162
LGA    G      99      G      99         48.441
LGA    D     100      D     100         47.763
LGA    I     101      I     101         45.034
LGA    D     102      D     102         44.818
LGA    D     103      D     103         41.723
LGA    N     104      N     104         40.240
LGA    E     105      E     105         35.987
LGA    L     106      L     106         33.387
LGA    A     107      A     107         32.926
LGA    L     108      L     108         29.899
LGA    W     109      W     109         25.570
LGA    T     110      T     110         24.405
LGA    L     111      L     111         24.455
LGA    I     112      I     112         19.811
LGA    S     113      S     113         16.139
LGA    T     114      T     114         17.203
LGA    L     115      L     115         16.722
LGA    C     116      C     116         11.664
LGA    G     117      G     117         10.168
LGA    L     118      L     118          3.982
LGA    P     119      P     119          2.623
LGA    T     120      T     120          7.346
LGA    M     121      M     121         10.993
LGA    T     122      T     122         18.058
LGA    V     123      V     123         22.079
LGA    M     124      M     124         26.223
LGA    E     125      E     125         20.801
LGA    A     126      A     126         18.066
LGA    I     127      I     127         24.731
LGA    N     128      N     128         24.694
LGA    N     129      N     129         17.864
LGA    M     130      M     130         19.977
LGA    K     131      K     131         25.772
LGA    N     132      N     132         22.689

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  123  123    4.0     21    1.71    18.089    16.372     1.158

LGA_LOCAL      RMSD =  1.714  Number of atoms =   21  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 26.427  Number of atoms =  123 
Std_ALL_ATOMS  RMSD = 22.329  (standard rmsd on all 123 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.336348 * X  +   0.867940 * Y  +  -0.365446 * Z  +  14.581874
  Y_new =  -0.940475 * X  +  -0.329662 * Y  +   0.082641 * Z  +  12.655607
  Z_new =  -0.048746 * X  +   0.371489 * Y  +   0.927157 * Z  +  33.660923 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   0.381089   -2.760504  [ DEG:    21.8348   -158.1652 ]
  Theta =   0.048765    3.092828  [ DEG:     2.7940    177.2060 ]
  Phi   =  -1.914258    1.227334  [ DEG:  -109.6789     70.3211 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0307TS393_5-D1                               
REMARK     2: T0307_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0307TS393_5-D1.T0307_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  123  123   4.0   21   1.71  16.372    22.33
REMARK  ---------------------------------------------------------- 
MOLECULE T0307TS393_5-D1
PFRMAT TS
TARGET T0307
MODEL 5
PARENT N/A
ATOM     10  CA  ILE    10      28.760   6.978  48.728  1.00 25.00           C
ATOM     11  CA  MET    11      25.622   9.146  48.729  1.00 25.00           C
ATOM     12  CA  THR    12      26.379  12.831  48.221  1.00 25.00           C
ATOM     13  CA  PHE    13      23.393  13.395  45.896  1.00 25.00           C
ATOM     14  CA  SER    14      22.615  16.425  43.845  1.00 25.00           C
ATOM     15  CA  GLY    15      22.738  17.276  40.191  1.00 25.00           C
ATOM     16  CA  GLN    16      24.911  14.127  40.356  1.00 25.00           C
ATOM     17  CA  GLU    17      21.923  11.980  39.295  1.00 25.00           C
ATOM     18  CA  LEU    18      21.235  14.343  36.360  1.00 25.00           C
ATOM     19  CA  THR    19      24.909  14.137  35.302  1.00 25.00           C
ATOM     20  CA  ALA    20      24.768  10.313  35.465  1.00 25.00           C
ATOM     21  CA  ILE    21      21.589  10.316  33.329  1.00 25.00           C
ATOM     22  CA  ILE    22      23.282  12.606  30.769  1.00 25.00           C
ATOM     23  CA  LYS    23      26.319  10.278  30.656  1.00 25.00           C
ATOM     24  CA  MET    24      24.019   7.263  30.116  1.00 25.00           C
ATOM     25  CA  ALA    25      22.227   9.108  27.278  1.00 25.00           C
ATOM     26  CA  LYS    26      25.597   9.949  25.665  1.00 25.00           C
ATOM     27  CA  SER    27      26.666   6.281  25.925  1.00 25.00           C
ATOM     28  CA  MET    28      23.372   5.181  24.310  1.00 25.00           C
ATOM     29  CA  VAL    29      23.894   7.700  21.472  1.00 25.00           C
ATOM     30  CA  MET    30      27.454   6.393  20.934  1.00 25.00           C
ATOM     31  CA  ALA    31      28.884   4.666  17.883  1.00 25.00           C
ATOM     32  CA  ASP    32      30.853   3.857  14.731  1.00 25.00           C
ATOM     33  CA  GLY    33      32.869   3.281  11.545  1.00 25.00           C
ATOM     34  CA  LYS    34      34.877   2.789   8.372  1.00 25.00           C
ATOM     35  CA  ILE    35      37.058   2.456   5.274  1.00 25.00           C
ATOM     36  CA  LYS    36      39.570   3.414   2.633  1.00 25.00           C
ATOM     37  CA  PRO    37      42.214   5.255   0.643  1.00 25.00           C
ATOM     38  CA  ALA    38      43.445   5.936   4.205  1.00 25.00           C
ATOM     39  CA  GLU    39      42.394   9.606   3.893  1.00 25.00           C
ATOM     40  CA  ILE    40      38.933   8.534   2.650  1.00 25.00           C
ATOM     41  CA  ALA    41      38.591   6.121   5.603  1.00 25.00           C
ATOM     42  CA  VAL    42      39.576   8.914   8.031  1.00 25.00           C
ATOM     43  CA  MET    43      36.981  11.241   6.444  1.00 25.00           C
ATOM     44  CA  THR    44      34.304   8.524   6.778  1.00 25.00           C
ATOM     45  CA  ARG    45      35.234   8.025  10.459  1.00 25.00           C
ATOM     46  CA  GLU    46      34.995  11.800  11.057  1.00 25.00           C
ATOM     47  CA  PHE    47      31.552  11.872   9.379  1.00 25.00           C
ATOM     48  CA  MET    48      30.393   8.955  11.573  1.00 25.00           C
ATOM     49  CA  ARG    49      31.643  10.780  14.700  1.00 25.00           C
ATOM     50  CA  PHE    50      29.774  13.946  13.629  1.00 25.00           C
ATOM     51  CA  GLY    51      26.579  11.906  13.084  1.00 25.00           C
ATOM     52  CA  ILE    52      26.964  10.332  16.555  1.00 25.00           C
ATOM     53  CA  LEU    53      27.430  13.803  18.104  1.00 25.00           C
ATOM     54  CA  GLN    54      24.289  15.055  16.306  1.00 25.00           C
ATOM     55  CA  ASP    55      22.319  12.033  17.591  1.00 25.00           C
ATOM     56  CA  GLN    56      23.550  12.714  21.153  1.00 25.00           C
ATOM     57  CA  VAL    57      22.499  16.384  20.841  1.00 25.00           C
ATOM     58  CA  ASP    58      19.038  15.311  19.598  1.00 25.00           C
ATOM     59  CA  LEU    59      18.697  12.898  22.553  1.00 25.00           C
ATOM     60  CA  LEU    60      19.681  15.692  24.980  1.00 25.00           C
ATOM     61  CA  LEU    61      17.086  18.019  23.393  1.00 25.00           C
ATOM     62  CA  LYS    62      14.409  15.301  23.726  1.00 25.00           C
ATOM     63  CA  ALA    63      15.339  14.801  27.408  1.00 25.00           C
ATOM     64  CA  SER    64      15.099  18.577  28.006  1.00 25.00           C
ATOM     65  CA  ASP    65      11.658  18.648  26.327  1.00 25.00           C
ATOM     66  CA  SER    66      10.499  15.733  28.522  1.00 25.00           C
ATOM     67  CA  ILE    67      11.748  17.558  31.649  1.00 25.00           C
ATOM     68  CA  GLU    68       9.879  20.724  30.578  1.00 25.00           C
ATOM     69  CA  ALA    69       6.684  18.683  30.033  1.00 25.00           C
ATOM     70  CA  SER    70       7.068  17.110  33.504  1.00 25.00           C
ATOM     71  CA  GLN    71       7.536  20.580  35.053  1.00 25.00           C
ATOM     72  CA  ALA    72       4.394  21.832  33.255  1.00 25.00           C
ATOM     73  CA  VAL    73       2.424  18.811  34.540  1.00 25.00           C
ATOM     74  CA  ALA    74       3.655  19.492  38.102  1.00 25.00           C
ATOM     75  CA  LEU    75       2.603  23.161  37.790  1.00 25.00           C
ATOM     76  CA  ILE    76      -0.857  22.089  36.546  1.00 25.00           C
ATOM     77  CA  ALA    77      -1.198  19.676  39.500  1.00 25.00           C
ATOM     78  CA  ARG    78      -0.214  22.470  41.928  1.00 25.00           C
ATOM     79  CA  MET    79      -2.809  24.796  40.341  1.00 25.00           C
ATOM     80  CA  ASP    80      -5.486  22.078  40.676  1.00 25.00           C
ATOM     81  CA  GLU    81      -4.556  21.579  44.357  1.00 25.00           C
ATOM     82  CA  GLU    82      -4.796  25.355  44.954  1.00 25.00           C
ATOM     83  CA  ARG    83      -8.237  25.426  43.276  1.00 25.00           C
ATOM     84  CA  LYS    84      -9.396  22.511  45.471  1.00 25.00           C
ATOM     85  CA  LYS    85      -8.147  24.336  48.598  1.00 25.00           C
ATOM     86  CA  TYR    86     -10.017  27.501  47.527  1.00 25.00           C
ATOM     87  CA  VAL    87     -13.211  25.461  46.982  1.00 25.00           C
ATOM     88  CA  ALA    88     -12.826  23.887  50.453  1.00 25.00           C
ATOM     89  CA  SER    89     -12.359  27.358  52.001  1.00 25.00           C
ATOM     90  CA  TYR    90     -15.501  28.610  50.204  1.00 25.00           C
ATOM     91  CA  LEU    91     -17.471  25.587  51.489  1.00 25.00           C
ATOM     92  CA  GLY    92     -16.240  26.269  55.051  1.00 25.00           C
ATOM     93  CA  VAL    93     -17.292  29.939  54.739  1.00 25.00           C
ATOM     94  CA  ILE    94     -20.752  28.866  53.496  1.00 25.00           C
ATOM     95  CA  MET    95     -21.093  26.453  56.450  1.00 25.00           C
ATOM     96  CA  ALA    96     -20.109  29.247  58.877  1.00 25.00           C
ATOM     97  CA  SER    97     -17.039  27.148  59.527  1.00 25.00           C
ATOM     98  CA  ASP    98     -14.303  24.899  58.045  1.00 25.00           C
ATOM     99  CA  GLY    99     -11.771  22.710  56.124  1.00 25.00           C
ATOM    100  CA  ASP   100      -9.433  20.600  53.921  1.00 25.00           C
ATOM    101  CA  ILE   101      -6.834  18.853  51.710  1.00 25.00           C
ATOM    102  CA  ASP   102      -4.534  17.057  49.304  1.00 25.00           C
ATOM    103  CA  ASP   103      -2.099  15.489  46.829  1.00 25.00           C
ATOM    104  CA  ASN   104       0.213  17.266  44.346  1.00 25.00           C
ATOM    105  CA  GLU   105       3.261  15.590  45.946  1.00 25.00           C
ATOM    106  CA  LEU   106       1.545  12.175  45.698  1.00 25.00           C
ATOM    107  CA  ALA   107       0.747  12.818  42.007  1.00 25.00           C
ATOM    108  CA  LEU   108       4.395  13.790  41.362  1.00 25.00           C
ATOM    109  CA  TRP   109       5.580  10.590  43.101  1.00 25.00           C
ATOM    110  CA  THR   110       3.176   8.510  40.967  1.00 25.00           C
ATOM    111  CA  LEU   111       4.479  10.213  37.794  1.00 25.00           C
ATOM    112  CA  ILE   112       8.086   9.482  38.854  1.00 25.00           C
ATOM    113  CA  SER   113       7.185   5.814  39.483  1.00 25.00           C
ATOM    114  CA  THR   114       5.544   5.599  36.029  1.00 25.00           C
ATOM    115  CA  LEU   115       8.671   7.122  34.424  1.00 25.00           C
ATOM    116  CA  CYS   116       9.586   4.372  31.923  1.00 25.00           C
ATOM    117  CA  GLY   117       8.717   1.340  29.805  1.00 25.00           C
ATOM    118  CA  LEU   118      12.144  -0.393  29.713  1.00 25.00           C
ATOM    119  CA  PRO   119      11.898  -3.110  32.383  1.00 25.00           C
ATOM    120  CA  THR   120      15.340  -2.117  33.653  1.00 25.00           C
ATOM    121  CA  MET   121      13.776   0.895  35.264  1.00 25.00           C
ATOM    122  CA  THR   122      14.895  -0.710  38.483  1.00 25.00           C
ATOM    123  CA  VAL   123      12.552  -1.271  41.460  1.00 25.00           C
ATOM    124  CA  MET   124      15.270  -0.039  43.861  1.00 25.00           C
ATOM    125  CA  GLU   125      15.799   3.079  41.702  1.00 25.00           C
ATOM    126  CA  ALA   126      12.029   3.750  41.703  1.00 25.00           C
ATOM    127  CA  ILE   127      11.939   3.385  45.513  1.00 25.00           C
ATOM    128  CA  ASN   128      14.872   5.827  45.841  1.00 25.00           C
ATOM    129  CA  ASN   129      13.073   8.330  43.568  1.00 25.00           C
ATOM    130  CA  MET   130       9.897   8.005  45.681  1.00 25.00           C
ATOM    131  CA  LYS   131      11.700   8.357  49.013  1.00 25.00           C
ATOM    132  CA  ASN   132      12.434  12.071  48.626  1.00 25.00           C
TER
END
