
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  123 (  123),  selected  123 , name T0307TS599_1-D1
# Molecule2: number of CA atoms  123 (  939),  selected  123 , name T0307_D1.pdb
# PARAMETERS: T0307TS599_1-D1.T0307_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    38        64 - 101         4.89    17.50
  LCS_AVERAGE:     26.25

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    20        67 - 86          1.92    18.50
  LONGEST_CONTINUOUS_SEGMENT:    20        68 - 87          1.85    18.99
  LCS_AVERAGE:     12.91

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    17        13 - 29          0.86    22.46
  LCS_AVERAGE:      9.70

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  123
LCS_GDT     I      10     I      10      5    6   23     4    5    5    5    5    6    8    9   11   12   13   15   16   19   19   20   20   32   34   36 
LCS_GDT     M      11     M      11      5   11   23     4    5    5    6    7    9   11   14   15   17   21   24   27   31   34   38   40   43   45   48 
LCS_GDT     T      12     T      12      5   18   24     4    5    5    6    9   13   17   18   18   18   21   24   27   29   34   38   40   44   46   50 
LCS_GDT     F      13     F      13     17   18   24     5    8   14   17   17   17   17   18   19   21   24   28   30   34   37   41   43   51   52   56 
LCS_GDT     S      14     S      14     17   18   24     8   15   16   17   17   17   17   20   23   25   31   33   34   36   37   41   43   46   52   56 
LCS_GDT     G      15     G      15     17   18   24     5   15   16   17   17   17   17   22   25   29   31   33   34   36   37   41   43   46   52   56 
LCS_GDT     Q      16     Q      16     17   18   24     6   15   16   17   17   17   18   19   22   24   31   33   35   42   44   46   52   55   55   56 
LCS_GDT     E      17     E      17     17   18   24     8   15   16   17   17   17   20   24   26   29   32   33   35   42   44   46   52   55   55   56 
LCS_GDT     L      18     L      18     17   18   24    10   15   16   17   17   17   17   19   20   23   30   32   35   42   44   46   52   55   55   56 
LCS_GDT     T      19     T      19     17   18   24    10   15   16   17   17   17   17   18   18   19   22   24   27   33   38   41   52   55   55   56 
LCS_GDT     A      20     A      20     17   18   24    10   15   16   17   17   18   22   24   26   28   31   33   35   42   44   46   52   55   55   56 
LCS_GDT     I      21     I      21     17   18   24    10   15   16   17   17   20   22   24   26   29   32   33   35   42   44   46   52   55   55   56 
LCS_GDT     I      22     I      22     17   18   24    10   15   16   17   17   17   17   18   19   23   25   27   31   33   37   40   43   48   55   56 
LCS_GDT     K      23     K      23     17   18   24    10   15   16   17   17   17   17   18   19   21   24   27   31   33   34   35   36   38   40   46 
LCS_GDT     M      24     M      24     17   18   24    10   15   16   17   17   17   17   18   18   19   23   27   31   33   34   35   36   38   38   39 
LCS_GDT     A      25     A      25     17   18   24    10   15   16   17   17   17   17   18   18   20   24   27   31   33   34   35   36   38   40   44 
LCS_GDT     K      26     K      26     17   18   24    10   15   16   17   17   17   17   18   18   19   22   24   26   28   30   33   36   38   38   39 
LCS_GDT     S      27     S      27     17   18   24    10   15   16   17   17   17   17   18   18   19   22   24   25   26   26   28   32   34   36   39 
LCS_GDT     M      28     M      28     17   18   24    10   15   16   17   17   17   17   18   18   19   22   24   25   26   26   27   29   31   35   39 
LCS_GDT     V      29     V      29     17   18   24     9   14   16   17   17   17   17   18   18   18   22   24   25   26   26   27   29   32   35   39 
LCS_GDT     M      30     M      30      6   17   24     5    5    6    6    7   10   13   16   18   19   22   24   25   26   26   27   29   30   33   37 
LCS_GDT     A      31     A      31      6    7   24     5    5    6    6    8   10   13   14   16   19   22   24   25   26   26   26   27   28   31   33 
LCS_GDT     D      32     D      32      6    7   24     5    5    6    6    8   10   13   14   16   19   22   24   25   26   26   26   27   28   31   33 
LCS_GDT     G      33     G      33      6    7   24     5    5    6    6    8   10   13   14   16   19   22   24   25   26   26   26   27   36   39   41 
LCS_GDT     K      34     K      34      7    7   24     5    6    7    8    8   10   13   14   16   19   22   24   25   26   28   31   33   37   43   48 
LCS_GDT     I      35     I      35      7    7   24     3    5    7    8    8   10   13   15   16   19   20   24   25   26   28   32   37   39   43   48 
LCS_GDT     K      36     K      36      7    7   24     3    6    7    8    8    9   11   13   16   17   19   21   23   26   30   34   36   38   43   48 
LCS_GDT     P      37     P      37      7    7   23     4    6    7    8    8    9   11   12   15   17   18   19   23   23   25   28   31   34   40   48 
LCS_GDT     A      38     A      38      7    7   24     4    6    7    8    8    9   11   12   15   17   18   18   20   23   25   28   31   33   38   46 
LCS_GDT     E      39     E      39      7    7   30     4    6    7    8    8    9   12   14   17   19   23   27   31   33   34   35   37   40   43   48 
LCS_GDT     I      40     I      40      7    7   30     4    5    6    8    8   10   13   14   17   19   24   27   31   33   34   35   40   43   47   50 
LCS_GDT     A      41     A      41      3    3   32     0    3    4    5    7    9   14   16   17   19   24   27   31   33   37   41   43   51   53   56 
LCS_GDT     V      42     V      42      3    3   32     3    3    3    3    5    9   12   14   17   21   25   27   33   36   41   42   46   55   55   56 
LCS_GDT     M      43     M      43      7   19   32     5    6   12   17   21   23   24   26   27   29   32   33   35   38   44   46   52   55   55   56 
LCS_GDT     T      44     T      44      7   19   32     5    8   14   19   21   23   24   26   27   29   32   33   35   42   44   46   52   55   55   56 
LCS_GDT     R      45     R      45      7   19   32     5    7   14   19   21   23   24   26   27   29   32   33   35   38   41   46   52   55   55   56 
LCS_GDT     E      46     E      46      7   19   32     5    7   14   19   21   23   24   26   27   29   32   33   35   38   41   43   52   55   55   56 
LCS_GDT     F      47     F      47      7   19   32     5    6    9   14   19   22   24   26   27   29   32   33   35   38   41   42   52   55   55   56 
LCS_GDT     M      48     M      48      7   19   32     5    6    9   14   19   22   23   26   27   29   31   33   35   36   41   42   44   55   55   56 
LCS_GDT     R      49     R      49      7   19   32     3    6    9   14   18   21   23   24   26   27   30   30   32   35   37   41   44   45   47   48 
LCS_GDT     F      50     F      50      6   19   32     3    6    9   14   18   20   22   23   26   26   28   30   32   35   37   41   42   45   47   48 
LCS_GDT     G      51     G      51      6   19   32     3    6    9   14   18   21   23   24   26   27   30   31   32   35   38   41   44   49   55   56 
LCS_GDT     I      52     I      52     13   19   32     3    7   14   19   21   23   24   26   27   29   32   33   35   42   44   46   52   55   55   56 
LCS_GDT     L      53     L      53     15   19   32     4   11   15   19   21   23   24   26   27   29   32   33   35   42   44   46   52   55   55   56 
LCS_GDT     Q      54     Q      54     15   19   32     4   11   15   19   21   23   24   26   27   29   32   33   35   42   44   46   52   55   55   56 
LCS_GDT     D      55     D      55     15   19   32     4    9   15   19   21   23   24   26   27   29   32   33   35   42   44   46   52   55   55   56 
LCS_GDT     Q      56     Q      56     15   19   32     9   12   15   19   21   23   24   26   27   29   32   33   35   42   44   46   52   55   55   56 
LCS_GDT     V      57     V      57     15   19   32     9   12   15   19   21   23   24   26   27   29   32   33   35   42   44   46   52   55   55   56 
LCS_GDT     D      58     D      58     15   19   32     9   12   15   19   21   23   24   26   27   29   32   33   35   42   44   46   52   55   55   56 
LCS_GDT     L      59     L      59     15   19   32     9   12   15   19   21   23   24   26   27   29   32   33   35   42   44   46   52   55   55   56 
LCS_GDT     L      60     L      60     15   19   32     9   12   15   19   21   23   24   26   27   29   32   33   35   42   44   46   52   55   55   56 
LCS_GDT     L      61     L      61     15   19   37     9   12   15   19   21   23   24   26   27   29   32   33   35   42   44   46   52   55   55   56 
LCS_GDT     K      62     K      62     15   19   37     9   12   15   19   21   23   24   26   27   29   32   33   35   42   44   46   52   55   55   56 
LCS_GDT     A      63     A      63     15   18   37     9   12   15   19   21   23   24   26   27   29   32   33   35   42   44   46   52   55   55   56 
LCS_GDT     S      64     S      64     15   18   38     9   12   15   19   21   23   24   26   27   29   32   33   35   42   44   46   52   55   55   56 
LCS_GDT     D      65     D      65     15   18   38     4   12   15   17   21   23   24   26   27   29   32   33   35   42   44   46   52   55   55   56 
LCS_GDT     S      66     S      66     15   18   38     4   12   15   18   21   23   24   26   27   29   32   33   35   42   44   46   52   55   55   56 
LCS_GDT     I      67     I      67     15   20   38     4   12   15   19   21   23   24   26   27   29   32   33   35   42   44   46   52   55   55   56 
LCS_GDT     E      68     E      68     13   20   38     6   11   13   19   21   23   24   26   28   29   32   33   35   42   44   46   52   55   55   56 
LCS_GDT     A      69     A      69     12   20   38     6   11   13   15   17   19   24   25   28   29   32   33   35   42   44   46   52   55   55   56 
LCS_GDT     S      70     S      70     12   20   38     6   11   12   15   17   19   22   25   28   29   31   33   35   42   44   46   52   55   55   56 
LCS_GDT     Q      71     Q      71     12   20   38     6   11   13   15   17   19   22   25   28   29   32   33   35   42   44   46   52   55   55   56 
LCS_GDT     A      72     A      72     12   20   38     7   11   13   15   17   19   22   25   28   29   31   33   34   40   44   45   52   55   55   56 
LCS_GDT     V      73     V      73     12   20   38     7   11   13   15   17   19   22   25   28   29   31   33   34   36   39   41   44   51   52   56 
LCS_GDT     A      74     A      74     12   20   38     7   11   13   15   17   19   22   25   28   29   31   33   34   36   39   41   43   51   52   56 
LCS_GDT     L      75     L      75     12   20   38     7   11   13   15   17   19   22   25   28   29   31   33   34   36   37   41   43   46   52   56 
LCS_GDT     I      76     I      76     12   20   38     7   11   13   15   17   19   22   25   28   29   31   33   34   36   37   41   43   46   50   54 
LCS_GDT     A      77     A      77     12   20   38     7   11   13   15   17   19   22   25   28   29   31   33   34   36   37   41   43   46   50   54 
LCS_GDT     R      78     R      78     12   20   38     7   11   13   15   17   19   22   25   28   29   31   33   34   36   37   41   43   46   50   54 
LCS_GDT     M      79     M      79     12   20   38     5   11   13   15   17   19   22   25   28   29   31   33   34   36   38   41   44   46   50   54 
LCS_GDT     D      80     D      80     15   20   38    14   15   15   15   15   16   22   25   28   29   31   33   34   36   38   41   43   46   50   54 
LCS_GDT     E      81     E      81     15   20   38    14   15   15   15   17   19   22   25   28   29   31   33   34   36   38   41   43   46   50   54 
LCS_GDT     E      82     E      82     15   20   38    14   15   15   15   15   19   22   25   28   29   31   33   34   36   38   41   43   46   50   54 
LCS_GDT     R      83     R      83     15   20   38    14   15   15   15   16   19   22   25   28   29   31   33   34   36   38   41   44   46   50   54 
LCS_GDT     K      84     K      84     15   20   38    14   15   15   15   17   19   22   25   28   29   31   33   34   36   38   41   43   46   50   54 
LCS_GDT     K      85     K      85     15   20   38    14   15   15   15   17   19   22   25   28   29   31   33   34   36   38   41   43   46   50   54 
LCS_GDT     Y      86     Y      86     15   20   38    14   15   15   15   17   19   22   25   28   29   31   33   34   36   38   41   44   46   50   54 
LCS_GDT     V      87     V      87     15   20   38    14   15   15   15   16   19   22   25   28   29   31   33   34   36   38   41   44   46   50   54 
LCS_GDT     A      88     A      88     15   17   38    14   15   15   15   15   18   22   25   28   29   31   33   34   36   38   41   43   46   50   54 
LCS_GDT     S      89     S      89     15   17   38    14   15   15   15   17   19   22   25   28   29   31   33   34   36   38   41   43   46   50   54 
LCS_GDT     Y      90     Y      90     15   17   38    14   15   15   15   17   19   22   25   28   29   31   33   34   36   38   41   44   46   50   54 
LCS_GDT     L      91     L      91     15   17   38    14   15   15   15   15   17   21   25   28   29   31   33   34   36   38   41   44   46   50   54 
LCS_GDT     G      92     G      92     15   17   38    14   15   15   15   15   17   21   25   28   29   31   33   34   36   38   41   44   46   50   54 
LCS_GDT     V      93     V      93     15   17   38    14   15   15   15   17   19   22   25   28   29   31   33   34   36   38   41   44   46   50   54 
LCS_GDT     I      94     I      94     15   17   38    11   15   15   15   15   19   21   25   28   29   31   33   34   36   38   41   44   45   50   54 
LCS_GDT     M      95     M      95      4   16   38     3    4    6    9   11   11   22   25   28   29   31   33   34   36   38   41   47   51   52   56 
LCS_GDT     A      96     A      96      4   12   38     3    4    8   12   17   17   21   24   26   28   31   33   34   42   44   46   52   55   55   56 
LCS_GDT     S      97     S      97      4   12   38     3    3    4    5    7   10   12   14   22   24   26   28   34   42   44   46   52   55   55   56 
LCS_GDT     D      98     D      98      4   12   38     3    4    6    9   11   14   17   20   22   24   26   28   34   42   44   46   52   55   55   56 
LCS_GDT     G      99     G      99      4   12   38     3    4    6    9   11   14   17   20   22   24   26   30   35   42   44   46   52   55   55   56 
LCS_GDT     D     100     D     100      7   12   38     6    7    7    9   11   14   16   20   22   24   29   32   35   42   44   46   52   55   55   56 
LCS_GDT     I     101     I     101      7   12   38     6    7    8    9   11   14   18   21   24   27   28   32   35   42   44   46   52   55   55   56 
LCS_GDT     D     102     D     102      7   12   33     6    7    8    9   11   14   17   20   22   24   26   29   35   42   44   46   52   55   55   56 
LCS_GDT     D     103     D     103      7   12   33     6    7    8    9   11   14   17   20   22   24   26   29   31   35   38   45   51   55   55   56 
LCS_GDT     N     104     N     104      7   12   33     6    7    8    9   11   14   17   20   22   25   26   29   31   35   38   41   44   45   47   49 
LCS_GDT     E     105     E     105      7   12   33     6    7    8    9   11   14   17   20   22   24   26   29   31   35   38   41   44   45   52   56 
LCS_GDT     L     106     L     106      7   16   33     3    7    8    8   11   14   17   20   24   25   26   30   35   42   44   46   52   55   55   56 
LCS_GDT     A     107     A     107     15   16   33    10   14   15   16   18   18   19   22   24   25   30   32   35   42   44   46   52   55   55   56 
LCS_GDT     L     108     L     108     15   16   33    10   14   15   16   18   18   19   22   24   25   26   29   35   42   44   46   52   55   55   56 
LCS_GDT     W     109     W     109     15   16   33    10   14   15   16   18   18   19   22   24   25   26   32   35   42   44   46   52   55   55   56 
LCS_GDT     T     110     T     110     15   16   33    10   14   15   16   18   18   19   22   25   28   30   33   35   42   44   46   52   55   55   56 
LCS_GDT     L     111     L     111     15   16   33    10   14   15   16   18   18   19   22   24   27   32   33   35   42   44   46   52   55   55   56 
LCS_GDT     I     112     I     112     15   16   33    10   14   15   16   18   18   19   22   24   25   30   32   35   42   44   46   52   55   55   56 
LCS_GDT     S     113     S     113     15   16   33    10   14   15   16   18   18   21   24   26   29   32   33   35   42   44   46   52   55   55   56 
LCS_GDT     T     114     T     114     15   16   33    10   14   15   19   21   23   24   26   27   29   32   33   35   38   41   46   52   55   55   56 
LCS_GDT     L     115     L     115     15   16   33    10   14   15   16   18   23   24   25   27   29   32   33   35   38   41   46   52   55   55   56 
LCS_GDT     C     116     C     116     15   16   33    10   14   15   16   19   22   24   26   27   29   32   33   35   42   44   46   52   55   55   56 
LCS_GDT     G     117     G     117     15   16   33    10   14   15   16   18   21   24   26   27   29   32   33   35   38   41   43   52   55   55   56 
LCS_GDT     L     118     L     118     15   16   33     9   14   15   16   18   18   19   22   24   29   31   33   34   38   41   42   52   55   55   56 
LCS_GDT     P     119     P     119     15   16   33     8   14   15   16   18   18   19   22   24   25   26   30   33   36   39   40   44   45   47   50 
LCS_GDT     T     120     T     120     15   16   33     4    8   15   16   18   18   19   22   24   25   26   30   33   36   39   40   44   45   48   53 
LCS_GDT     M     121     M     121     15   16   33     4   14   15   16   18   18   19   22   24   25   26   29   31   33   37   40   44   45   47   49 
LCS_GDT     T     122     T     122     11   16   33     9   10   10   11   11   11   11   13   17   20   26   29   31   33   37   40   44   45   47   49 
LCS_GDT     V     123     V     123     11   12   33     9   10   10   11   11   11   11   12   15   20   22   26   31   35   38   41   44   45   47   49 
LCS_GDT     M     124     M     124     11   12   33     9   10   10   11   11   11   11   12   19   22   25   29   31   35   38   41   44   45   47   49 
LCS_GDT     E     125     E     125     11   12   33     9   10   10   16   18   18   19   22   24   25   26   29   31   35   38   41   44   45   47   49 
LCS_GDT     A     126     A     126     11   12   33     9   10   10   16   18   18   19   22   24   25   26   29   31   35   38   41   44   45   47   49 
LCS_GDT     I     127     I     127     11   12   33     9   10   10   11   11   18   19   22   24   25   26   29   31   35   37   41   44   45   47   49 
LCS_GDT     N     128     N     128     11   12   33     9   10   10   11   11   15   19   22   24   25   26   29   31   35   38   41   44   45   47   49 
LCS_GDT     N     129     N     129     11   12   33     9   10   10   11   11   17   19   22   24   25   26   29   31   35   38   41   44   45   47   49 
LCS_GDT     M     130     M     130     11   12   33     9   10   10   15   18   18   19   22   24   25   26   29   31   35   37   41   44   45   47   49 
LCS_GDT     K     131     K     131     11   12   33     8   10   10   11   11   17   19   22   24   25   26   29   31   33   37   40   44   45   47   49 
LCS_GDT     N     132     N     132     11   12   33     0    4    5   11   11   15   19   21   24   25   26   29   31   35   38   41   44   45   47   49 
LCS_AVERAGE  LCS_A:  16.28  (   9.70   12.91   26.25 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     14     15     16     19     21     23     24     26     28     29     32     33     35     42     44     46     52     55     55     56 
GDT PERCENT_CA  11.38  12.20  13.01  15.45  17.07  18.70  19.51  21.14  22.76  23.58  26.02  26.83  28.46  34.15  35.77  37.40  42.28  44.72  44.72  45.53
GDT RMS_LOCAL    0.30   0.35   0.62   1.41   1.51   1.68   1.81   2.19   2.74   2.60   3.15   3.25   3.58   5.01   5.15   5.36   5.81   6.02   6.02   6.11
GDT RMS_ALL_CA  22.06  21.96  22.48  18.77  19.33  18.96  19.10  18.85  19.83  18.68  17.97  18.15  17.93  16.37  16.30  16.55  16.58  16.65  16.65  16.73

#      Molecule1      Molecule2       DISTANCE
LGA    I      10      I      10         20.936
LGA    M      11      M      11         16.120
LGA    T      12      T      12         17.332
LGA    F      13      F      13         14.804
LGA    S      14      S      14         15.544
LGA    G      15      G      15         15.151
LGA    Q      16      Q      16          8.842
LGA    E      17      E      17          6.947
LGA    L      18      L      18          8.875
LGA    T      19      T      19          9.878
LGA    A      20      A      20          6.280
LGA    I      21      I      21          5.460
LGA    I      22      I      22         10.850
LGA    K      23      K      23         13.845
LGA    M      24      M      24         13.292
LGA    A      25      A      25         13.476
LGA    K      26      K      26         19.448
LGA    S      27      S      27         22.348
LGA    M      28      M      28         21.414
LGA    V      29      V      29         22.775
LGA    M      30      M      30         23.954
LGA    A      31      A      31         28.492
LGA    D      32      D      32         29.393
LGA    G      33      G      33         30.245
LGA    K      34      K      34         26.044
LGA    I      35      I      35         23.667
LGA    K      36      K      36         25.767
LGA    P      37      P      37         26.726
LGA    A      38      A      38         26.462
LGA    E      39      E      39         19.707
LGA    I      40      I      40         16.654
LGA    A      41      A      41         14.143
LGA    V      42      V      42          9.348
LGA    M      43      M      43          2.937
LGA    T      44      T      44          0.928
LGA    R      45      R      45          0.858
LGA    E      46      E      46          1.401
LGA    F      47      F      47          3.151
LGA    M      48      M      48          3.982
LGA    R      49      R      49          6.527
LGA    F      50      F      50          6.994
LGA    G      51      G      51          5.612
LGA    I      52      I      52          1.810
LGA    L      53      L      53          1.019
LGA    Q      54      Q      54          1.627
LGA    D      55      D      55          2.170
LGA    Q      56      Q      56          1.543
LGA    V      57      V      57          2.725
LGA    D      58      D      58          2.673
LGA    L      59      L      59          1.787
LGA    L      60      L      60          1.956
LGA    L      61      L      61          2.826
LGA    K      62      K      62          2.520
LGA    A      63      A      63          1.384
LGA    S      64      S      64          2.530
LGA    D      65      D      65          3.719
LGA    S      66      S      66          2.636
LGA    I      67      I      67          0.765
LGA    E      68      E      68          1.400
LGA    A      69      A      69          4.580
LGA    S      70      S      70          8.375
LGA    Q      71      Q      71          6.471
LGA    A      72      A      72         10.044
LGA    V      73      V      73         13.981
LGA    A      74      A      74         15.500
LGA    L      75      L      75         16.484
LGA    I      76      I      76         20.015
LGA    A      77      A      77         22.877
LGA    R      78      R      78         24.458
LGA    M      79      M      79         26.908
LGA    D      80      D      80         32.717
LGA    E      81      E      81         34.423
LGA    E      82      E      82         34.051
LGA    R      83      R      83         30.326
LGA    K      84      K      84         29.927
LGA    K      85      K      85         31.992
LGA    Y      86      Y      86         29.983
LGA    V      87      V      87         26.422
LGA    A      88      A      88         27.642
LGA    S      89      S      89         29.466
LGA    Y      90      Y      90         26.333
LGA    L      91      L      91         24.009
LGA    G      92      G      92         26.934
LGA    V      93      V      93         27.604
LGA    I      94      I      94         24.040
LGA    M      95      M      95         18.652
LGA    A      96      A      96         16.911
LGA    S      97      S      97         16.991
LGA    D      98      D      98         17.546
LGA    G      99      G      99         18.126
LGA    D     100      D     100         15.644
LGA    I     101      I     101         16.295
LGA    D     102      D     102         16.420
LGA    D     103      D     103         16.104
LGA    N     104      N     104         17.934
LGA    E     105      E     105         18.240
LGA    L     106      L     106         16.188
LGA    A     107      A     107         12.810
LGA    L     108      L     108         14.975
LGA    W     109      W     109         14.482
LGA    T     110      T     110          9.063
LGA    L     111      L     111          7.810
LGA    I     112      I     112          9.592
LGA    S     113      S     113          7.370
LGA    T     114      T     114          1.665
LGA    L     115      L     115          4.455
LGA    C     116      C     116          3.619
LGA    G     117      G     117          3.581
LGA    L     118      L     118          8.251
LGA    P     119      P     119         11.636
LGA    T     120      T     120         12.513
LGA    M     121      M     121         16.855
LGA    T     122      T     122         18.980
LGA    V     123      V     123         20.253
LGA    M     124      M     124         25.411
LGA    E     125      E     125         26.472
LGA    A     126      A     126         24.647
LGA    I     127      I     127         29.211
LGA    N     128      N     128         33.758
LGA    N     129      N     129         32.999
LGA    M     130      M     130         32.974
LGA    K     131      K     131         39.039
LGA    N     132      N     132         41.471

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  123  123    4.0     26    2.19    21.545    19.199     1.135

LGA_LOCAL      RMSD =  2.192  Number of atoms =   26  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 18.805  Number of atoms =  123 
Std_ALL_ATOMS  RMSD = 14.330  (standard rmsd on all 123 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.481713 * X  +   0.158816 * Y  +  -0.861818 * Z  +  24.839771
  Y_new =  -0.483417 * X  +   0.868430 * Y  +  -0.110171 * Z  +   3.836056
  Z_new =   0.730932 * X  +   0.469688 * Y  +   0.495108 * Z  +  29.577877 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   0.759057   -2.382536  [ DEG:    43.4907   -136.5093 ]
  Theta =  -0.819686   -2.321906  [ DEG:   -46.9646   -133.0354 ]
  Phi   =  -0.787164    2.354429  [ DEG:   -45.1012    134.8988 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0307TS599_1-D1                               
REMARK     2: T0307_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0307TS599_1-D1.T0307_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  123  123   4.0   26   2.19  19.199    14.33
REMARK  ---------------------------------------------------------- 
MOLECULE T0307TS599_1-D1
PFRMAT TS                                                                       
TARGET T0307                                                                    
MODEL  1                                                                        
PARENT N/A                                                                      
ATOM     10  CA  ILE    10      21.700   7.644  28.551  1.00  0.00              
ATOM     11  CA  MET    11      20.905   5.553  31.596  1.00  0.00              
ATOM     12  CA  THR    12      23.881   3.908  33.350  1.00  0.00              
ATOM     13  CA  PHE    13      23.240   1.785  36.435  1.00  0.00              
ATOM     14  CA  SER    14      26.247   1.371  38.723  1.00  0.00              
ATOM     15  CA  GLY    15      25.212   2.155  42.350  1.00  0.00              
ATOM     16  CA  GLN    16      27.080   5.478  42.530  1.00  0.00              
ATOM     17  CA  GLU    17      26.213   6.535  38.947  1.00  0.00              
ATOM     18  CA  LEU    18      22.408   6.199  38.752  1.00  0.00              
ATOM     19  CA  THR    19      22.081   8.071  42.012  1.00  0.00              
ATOM     20  CA  ALA    20      24.316  10.869  40.788  1.00  0.00              
ATOM     21  CA  ILE    21      22.374  11.101  37.486  1.00  0.00              
ATOM     22  CA  ILE    22      19.074  11.316  39.422  1.00  0.00              
ATOM     23  CA  LYS    23      20.343  14.185  41.594  1.00  0.00              
ATOM     24  CA  MET    24      21.509  16.073  38.484  1.00  0.00              
ATOM     25  CA  ALA    25      18.142  15.533  36.797  1.00  0.00              
ATOM     26  CA  LYS    26      16.117  16.823  39.677  1.00  0.00              
ATOM     27  CA  SER    27      18.149  20.031  40.022  1.00  0.00              
ATOM     28  CA  MET    28      17.689  20.524  36.235  1.00  0.00              
ATOM     29  CA  VAL    29      14.019  19.880  35.734  1.00  0.00              
ATOM     30  CA  MET    30      12.170  18.052  32.979  1.00  0.00              
ATOM     31  CA  ALA    31       8.732  19.473  32.285  1.00  0.00              
ATOM     32  CA  ASP    32       7.015  16.840  30.253  1.00  0.00              
ATOM     33  CA  GLY    33       7.892  14.005  32.558  1.00  0.00              
ATOM     34  CA  LYS    34       9.964  12.264  29.926  1.00  0.00              
ATOM     35  CA  ILE    35      12.811  11.067  32.106  1.00  0.00              
ATOM     36  CA  LYS    36      11.876   9.383  35.419  1.00  0.00              
ATOM     37  CA  PRO    37      14.292   9.954  38.250  1.00  0.00              
ATOM     38  CA  ALA    38      15.430   6.356  38.596  1.00  0.00              
ATOM     39  CA  GLU    39      16.143   5.796  34.939  1.00  0.00              
ATOM     40  CA  ILE    40      17.801   9.018  33.779  1.00  0.00              
ATOM     41  CA  ALA    41      17.589   9.997  30.085  1.00  0.00              
ATOM     42  CA  VAL    42      19.446  12.930  28.666  1.00  0.00              
ATOM     43  CA  MET    43      18.522  14.362  25.317  1.00  0.00              
ATOM     44  CA  THR    44      20.066  17.695  24.540  1.00  0.00              
ATOM     45  CA  ARG    45      17.493  19.497  22.347  1.00  0.00              
ATOM     46  CA  GLU    46      14.899  18.109  24.772  1.00  0.00              
ATOM     47  CA  PHE    47      16.595  19.753  27.803  1.00  0.00              
ATOM     48  CA  MET    48      17.123  23.302  26.624  1.00  0.00              
ATOM     49  CA  ARG    49      13.611  23.154  25.215  1.00  0.00              
ATOM     50  CA  PHE    50      11.907  21.826  28.384  1.00  0.00              
ATOM     51  CA  GLY    51      13.554  24.545  30.455  1.00  0.00              
ATOM     52  CA  ILE    52      15.688  22.717  32.975  1.00  0.00              
ATOM     53  CA  LEU    53      18.513  25.264  32.842  1.00  0.00              
ATOM     54  CA  GLN    54      20.090  24.535  29.515  1.00  0.00              
ATOM     55  CA  ASP    55      23.657  25.542  30.541  1.00  0.00              
ATOM     56  CA  GLN    56      23.166  23.543  33.780  1.00  0.00              
ATOM     57  CA  VAL    57      22.274  20.439  31.727  1.00  0.00              
ATOM     58  CA  ASP    58      25.486  20.804  29.610  1.00  0.00              
ATOM     59  CA  LEU    59      27.514  20.885  32.847  1.00  0.00              
ATOM     60  CA  LEU    60      25.677  17.837  34.303  1.00  0.00              
ATOM     61  CA  LEU    61      26.197  15.875  31.072  1.00  0.00              
ATOM     62  CA  LYS    62      29.943  16.591  30.858  1.00  0.00              
ATOM     63  CA  ALA    63      30.534  15.573  34.469  1.00  0.00              
ATOM     64  CA  SER    64      28.588  12.311  34.100  1.00  0.00              
ATOM     65  CA  ASP    65      30.573  11.088  31.087  1.00  0.00              
ATOM     66  CA  SER    66      33.935  11.679  32.801  1.00  0.00              
ATOM     67  CA  ILE    67      33.170   9.857  36.047  1.00  0.00              
ATOM     68  CA  GLU    68      31.532   6.913  34.279  1.00  0.00              
ATOM     69  CA  ALA    69      34.385   6.322  31.818  1.00  0.00              
ATOM     70  CA  SER    70      37.046   6.350  34.515  1.00  0.00              
ATOM     71  CA  GLN    71      35.180   3.821  36.704  1.00  0.00              
ATOM     72  CA  ALA    72      34.679   1.470  33.764  1.00  0.00              
ATOM     73  CA  VAL    73      38.171   1.219  32.341  1.00  0.00              
ATOM     74  CA  ALA    74      39.612   0.679  35.796  1.00  0.00              
ATOM     75  CA  LEU    75      37.130  -2.012  36.689  1.00  0.00              
ATOM     76  CA  ILE    76      37.629  -3.922  33.404  1.00  0.00              
ATOM     77  CA  ALA    77      41.431  -3.799  33.673  1.00  0.00              
ATOM     78  CA  ARG    78      41.458  -4.917  37.310  1.00  0.00              
ATOM     79  CA  MET    79      39.097  -7.865  36.558  1.00  0.00              
ATOM     80  CA  ASP    80      40.845  -9.231  33.558  1.00  0.00              
ATOM     81  CA  GLU    81      40.215 -12.994  33.212  1.00  0.00              
ATOM     82  CA  GLU    82      36.591 -12.728  34.208  1.00  0.00              
ATOM     83  CA  ARG    83      35.997  -9.821  31.900  1.00  0.00              
ATOM     84  CA  LYS    84      37.602 -11.560  28.880  1.00  0.00              
ATOM     85  CA  LYS    85      35.473 -14.672  29.459  1.00  0.00              
ATOM     86  CA  TYR    86      32.263 -12.585  29.734  1.00  0.00              
ATOM     87  CA  VAL    87      33.081 -10.723  26.552  1.00  0.00              
ATOM     88  CA  ALA    88      33.757 -13.996  24.651  1.00  0.00              
ATOM     89  CA  SER    89      30.459 -15.495  25.779  1.00  0.00              
ATOM     90  CA  TYR    90      28.541 -12.364  24.702  1.00  0.00              
ATOM     91  CA  LEU    91      30.298 -12.315  21.315  1.00  0.00              
ATOM     92  CA  GLY    92      29.824 -16.106  20.801  1.00  0.00              
ATOM     93  CA  VAL    93      26.078 -15.444  21.290  1.00  0.00              
ATOM     94  CA  ILE    94      25.718 -12.271  19.185  1.00  0.00              
ATOM     95  CA  MET    95      23.469  -9.791  21.049  1.00  0.00              
ATOM     96  CA  ALA    96      22.502  -6.719  19.099  1.00  0.00              
ATOM     97  CA  SER    97      21.833  -3.329  20.630  1.00  0.00              
ATOM     98  CA  ASP    98      18.174  -3.161  19.779  1.00  0.00              
ATOM     99  CA  GLY    99      17.295  -6.599  21.222  1.00  0.00              
ATOM    100  CA  ASP   100      17.080  -8.497  17.942  1.00  0.00              
ATOM    101  CA  ILE   101      19.092 -11.551  18.858  1.00  0.00              
ATOM    102  CA  ASP   102      17.535 -14.795  17.807  1.00  0.00              
ATOM    103  CA  ASP   103      17.337 -17.573  20.342  1.00  0.00              
ATOM    104  CA  ASN   104      20.246 -19.409  18.744  1.00  0.00              
ATOM    105  CA  GLU   105      22.652 -16.493  19.185  1.00  0.00              
ATOM    106  CA  LEU   106      22.140 -15.283  22.757  1.00  0.00              
ATOM    107  CA  ALA   107      24.529 -13.574  25.061  1.00  0.00              
ATOM    108  CA  LEU   108      25.761 -12.924  28.458  1.00  0.00              
ATOM    109  CA  TRP   109      26.985  -9.319  28.575  1.00  0.00              
ATOM    110  CA  THR   110      23.761  -8.426  26.704  1.00  0.00              
ATOM    111  CA  LEU   111      21.729  -9.939  29.555  1.00  0.00              
ATOM    112  CA  ILE   112      23.684  -8.053  32.229  1.00  0.00              
ATOM    113  CA  SER   113      23.587  -4.778  30.346  1.00  0.00              
ATOM    114  CA  THR   114      19.766  -5.102  30.105  1.00  0.00              
ATOM    115  CA  LEU   115      19.410  -5.856  33.826  1.00  0.00              
ATOM    116  CA  CYS   116      21.647  -2.906  34.851  1.00  0.00              
ATOM    117  CA  GLY   117      19.858  -0.453  32.595  1.00  0.00              
ATOM    118  CA  LEU   118      22.781   0.351  30.382  1.00  0.00              
ATOM    119  CA  PRO   119      21.994   0.634  26.709  1.00  0.00              
ATOM    120  CA  THR   120      23.144  -2.494  24.821  1.00  0.00              
ATOM    121  CA  MET   121      25.184  -0.691  22.136  1.00  0.00              
ATOM    122  CA  THR   122      26.783   1.651  24.715  1.00  0.00              
ATOM    123  CA  VAL   123      27.845  -1.050  27.178  1.00  0.00              
ATOM    124  CA  MET   124      29.377  -3.333  24.535  1.00  0.00              
ATOM    125  CA  GLU   125      31.353  -0.503  23.054  1.00  0.00              
ATOM    126  CA  ALA   126      32.670   0.532  26.417  1.00  0.00              
ATOM    127  CA  ILE   127      33.747  -2.981  27.387  1.00  0.00              
ATOM    128  CA  ASN   128      35.589  -3.397  24.057  1.00  0.00              
ATOM    129  CA  ASN   129      37.348  -0.089  24.456  1.00  0.00              
ATOM    130  CA  MET   130      38.545  -0.746  27.949  1.00  0.00              
ATOM    131  CA  LYS   131      39.813  -4.075  27.486  1.00  0.00              
ATOM    132  CA  ASN   132      41.881  -1.550  26.010  1.00  0.00              
TER                                                                             
END
