
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  123 (  123),  selected  123 , name T0307TS599_2-D1
# Molecule2: number of CA atoms  123 (  939),  selected  123 , name T0307_D1.pdb
# PARAMETERS: T0307TS599_2-D1.T0307_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    38        64 - 101         4.91    17.19
  LONGEST_CONTINUOUS_SEGMENT:    38        65 - 102         4.86    17.51
  LCS_AVERAGE:     26.02

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    19        43 - 61          1.96    23.32
  LCS_AVERAGE:     12.34

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    16        13 - 28          0.96    23.35
  LONGEST_CONTINUOUS_SEGMENT:    16        14 - 29          0.66    23.48
  LCS_AVERAGE:      9.33

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  123
LCS_GDT     I      10     I      10      5    6   23     4    5    5    5    6    7    7    9   11   11   12   15   15   16   19   20   20   25   27   28 
LCS_GDT     M      11     M      11      5    8   23     4    5    5    6    7    8   11   14   15   20   23   26   29   31   37   39   41   43   45   47 
LCS_GDT     T      12     T      12      5   18   24     4    5    5    5    7    8   11   14   17   22   24   26   29   32   37   39   41   43   45   50 
LCS_GDT     F      13     F      13     16   18   24     4    5    7   14   16   17   17   17   19   22   24   28   30   33   37   39   43   46   53   61 
LCS_GDT     S      14     S      14     16   18   24     4   15   16   16   16   17   17   17   20   22   24   26   30   33   37   44   48   52   57   62 
LCS_GDT     G      15     G      15     16   18   24     8   15   16   16   16   17   17   17   21   22   24   26   29   33   39   44   48   56   61   64 
LCS_GDT     Q      16     Q      16     16   18   24     6   15   16   16   16   17   17   17   18   21   24   27   30   35   42   48   52   57   61   64 
LCS_GDT     E      17     E      17     16   18   24    12   15   16   16   16   17   19   22   25   28   30   31   34   36   39   48   52   57   61   64 
LCS_GDT     L      18     L      18     16   18   24    12   15   16   16   16   17   17   17   20   22   27   29   32   35   39   48   52   57   61   64 
LCS_GDT     T      19     T      19     16   18   24    12   15   16   16   16   17   17   17   18   19   22   24   27   31   42   48   52   57   61   64 
LCS_GDT     A      20     A      20     16   18   24    12   15   16   16   17   18   22   24   26   26   27   30   32   35   37   43   48   56   61   64 
LCS_GDT     I      21     I      21     16   18   24    12   15   16   16   17   19   22   24   26   27   29   31   34   36   38   39   42   54   61   64 
LCS_GDT     I      22     I      22     16   18   24    12   15   16   16   16   17   17   17   18   23   25   28   32   33   34   39   50   56   61   64 
LCS_GDT     K      23     K      23     16   18   24    12   15   16   16   16   17   17   17   19   22   25   28   32   33   34   35   37   39   42   45 
LCS_GDT     M      24     M      24     16   18   24    12   15   16   16   16   17   17   17   18   20   25   28   32   33   34   35   37   39   42   45 
LCS_GDT     A      25     A      25     16   18   24    12   15   16   16   16   17   17   17   18   22   24   28   32   33   34   35   37   38   42   47 
LCS_GDT     K      26     K      26     16   18   24    12   15   16   16   16   17   17   17   18   20   25   25   27   29   30   33   37   39   42   45 
LCS_GDT     S      27     S      27     16   18   24    12   15   16   16   16   17   17   17   18   19   22   24   25   26   27   33   37   37   38   39 
LCS_GDT     M      28     M      28     16   18   24    12   15   16   16   16   17   17   17   18   19   22   24   25   26   26   27   29   30   35   38 
LCS_GDT     V      29     V      29     16   18   24     8   14   16   16   16   17   17   17   18   19   22   24   25   26   26   27   29   32   35   39 
LCS_GDT     M      30     M      30      6   17   24     5    5    6    6    7   12   13   16   18   20   25   25   27   29   29   33   37   39   42   45 
LCS_GDT     A      31     A      31      6    7   24     5    5    6    6    8   10   13   13   16   19   22   24   25   26   26   26   27   28   31   39 
LCS_GDT     D      32     D      32      6    7   24     5    5    6    6    8   10   13   13   16   19   22   24   25   26   26   33   37   37   38   42 
LCS_GDT     G      33     G      33      6    7   24     5    5    6    6    8   10   13   13   16   19   25   25   27   29   29   43   49   53   60   63 
LCS_GDT     K      34     K      34      7    7   24     5    6   12   12   12   14   15   15   18   27   29   33   39   41   45   48   52   57   61   64 
LCS_GDT     I      35     I      35      7    7   24     4    7   11   12   13   17   19   21   23   27   29   33   39   41   45   48   52   57   61   64 
LCS_GDT     K      36     K      36      7    7   24     4    6    7    9   11   17   19   21   23   27   29   33   39   41   45   48   52   57   61   64 
LCS_GDT     P      37     P      37      7    7   24     4    6    7    9   12   17   19   21   23   27   29   33   39   41   45   47   52   57   61   64 
LCS_GDT     A      38     A      38      7    7   24     3    6    7    9   12   17   19   21   23   27   29   33   39   41   45   47   52   57   61   64 
LCS_GDT     E      39     E      39      7    7   29     3    6    7   12   13   17   19   21   23   27   29   33   39   41   45   48   52   57   61   64 
LCS_GDT     I      40     I      40      7    7   30     3    5    6    8    8   14   17   19   22   26   29   33   39   41   45   48   52   57   61   64 
LCS_GDT     A      41     A      41      3    3   32     0    3    4    5    6   10   12   14   18   19   24   28   32   34   37   41   47   53   59   63 
LCS_GDT     V      42     V      42      3    3   32     3    3    3    3    5   10   13   15   18   22   25   27   33   35   38   39   42   43   49   53 
LCS_GDT     M      43     M      43      8   19   32     6    6   11   17   20   22   24   24   26   28   30   32   34   36   38   39   42   44   45   51 
LCS_GDT     T      44     T      44      8   19   32     6    7   13   17   20   22   24   25   27   28   30   32   34   36   38   39   42   44   45   48 
LCS_GDT     R      45     R      45      8   19   32     6    7   13   17   20   22   24   25   27   28   30   32   34   36   38   39   42   44   45   48 
LCS_GDT     E      46     E      46      8   19   32     6    7   13   17   20   22   24   25   27   28   30   32   34   36   38   39   42   44   45   48 
LCS_GDT     F      47     F      47      8   19   32     6    6   11   14   18   21   24   25   27   28   30   32   34   36   38   39   42   44   45   48 
LCS_GDT     M      48     M      48      8   19   32     6    6   11   13   18   21   24   25   27   28   30   32   34   36   37   39   42   44   45   47 
LCS_GDT     R      49     R      49      8   19   32     3    6    9   13   18   20   23   25   27   28   29   32   33   36   37   39   42   44   45   47 
LCS_GDT     F      50     F      50      8   19   32     3    6   11   13   18   20   22   23   27   27   29   32   32   36   37   39   42   44   44   47 
LCS_GDT     G      51     G      51      6   19   32     3    6   11   13   18   20   22   24   27   28   29   32   33   36   37   39   42   44   45   47 
LCS_GDT     I      52     I      52      7   19   32     3    7   13   17   20   22   24   25   27   28   30   32   34   36   38   39   42   44   45   48 
LCS_GDT     L      53     L      53     13   19   32     4   10   13   17   20   22   24   25   27   28   30   32   34   36   38   39   42   44   45   48 
LCS_GDT     Q      54     Q      54     13   19   32     4    9   13   17   20   22   24   25   27   28   30   32   34   36   38   39   42   44   45   48 
LCS_GDT     D      55     D      55     13   19   32     4    9   13   17   20   22   24   25   27   28   30   32   34   36   38   39   42   44   46   52 
LCS_GDT     Q      56     Q      56     13   19   32     8   11   13   17   20   22   24   25   27   28   30   32   34   36   38   39   42   46   50   55 
LCS_GDT     V      57     V      57     13   19   32     8   10   13   17   20   22   24   25   27   28   30   32   34   36   38   39   43   48   51   58 
LCS_GDT     D      58     D      58     13   19   32     8   11   13   17   20   22   24   25   27   28   30   32   34   36   38   39   43   48   53   58 
LCS_GDT     L      59     L      59     13   19   32     8   11   13   17   20   22   24   25   27   28   30   32   34   36   38   41   45   50   56   63 
LCS_GDT     L      60     L      60     13   19   32     8   11   13   17   20   22   24   25   27   28   30   32   34   36   38   45   50   57   61   64 
LCS_GDT     L      61     L      61     13   19   32     8   11   13   17   20   22   24   25   27   28   30   32   34   37   39   45   50   57   61   64 
LCS_GDT     K      62     K      62     13   17   32     8   11   13   17   20   22   24   25   27   28   30   32   34   37   40   45   50   57   60   63 
LCS_GDT     A      63     A      63     13   17   32     8   11   13   16   20   22   24   25   27   28   30   32   34   38   45   47   52   57   61   64 
LCS_GDT     S      64     S      64     13   17   38     5   11   13   17   20   22   24   25   27   28   30   33   39   41   45   48   52   57   61   64 
LCS_GDT     D      65     D      65     13   17   38     5   11   13   17   20   22   24   25   27   28   30   33   39   41   45   48   52   57   61   64 
LCS_GDT     S      66     S      66     13   17   38     5   11   13   16   18   22   24   25   27   28   30   33   39   41   45   48   52   57   61   64 
LCS_GDT     I      67     I      67     13   18   38     5   11   13   16   18   22   24   25   27   28   30   33   39   41   45   48   52   57   61   64 
LCS_GDT     E      68     E      68     12   18   38     6   11   12   15   20   22   24   25   27   28   30   33   39   41   45   48   52   57   61   64 
LCS_GDT     A      69     A      69     12   18   38     7   11   12   14   15   17   22   24   27   28   30   33   39   41   45   48   52   57   61   64 
LCS_GDT     S      70     S      70     12   18   38     6   11   12   14   15   17   18   24   25   28   29   33   39   41   45   48   52   57   61   64 
LCS_GDT     Q      71     Q      71     12   18   38     6   11   12   14   15   17   22   24   25   28   30   33   39   41   45   48   52   57   61   64 
LCS_GDT     A      72     A      72     12   18   38     7   11   12   14   15   17   22   24   25   27   30   33   39   41   45   48   52   57   61   64 
LCS_GDT     V      73     V      73     12   18   38     7   11   12   14   15   17   22   24   25   27   30   33   39   41   45   48   52   57   61   64 
LCS_GDT     A      74     A      74     12   18   38     7   11   12   14   15   17   22   24   25   27   30   33   39   41   45   48   52   57   61   64 
LCS_GDT     L      75     L      75     12   18   38     7   11   12   14   15   17   22   24   25   27   30   33   39   41   45   48   52   57   61   64 
LCS_GDT     I      76     I      76     12   18   38     7   11   12   14   15   17   22   24   25   27   30   33   39   41   45   48   52   57   61   64 
LCS_GDT     A      77     A      77     12   18   38     7   11   12   14   15   17   22   24   25   27   30   33   39   41   45   48   52   57   61   64 
LCS_GDT     R      78     R      78     12   18   38     7   11   12   14   15   17   22   24   25   27   30   33   39   41   45   48   52   57   61   64 
LCS_GDT     M      79     M      79     12   18   38     4   11   12   14   15   17   22   24   25   27   30   33   39   41   45   48   52   57   61   64 
LCS_GDT     D      80     D      80     15   18   38    10   15   15   15   15   16   22   24   25   27   30   33   39   41   45   48   52   57   61   64 
LCS_GDT     E      81     E      81     15   18   38    10   15   15   15   15   17   22   24   25   27   30   33   39   41   45   48   52   57   61   64 
LCS_GDT     E      82     E      82     15   18   38    10   15   15   15   15   17   22   24   25   27   30   33   39   41   45   48   52   57   61   64 
LCS_GDT     R      83     R      83     15   18   38    10   15   15   15   15   17   22   24   25   26   30   33   39   41   45   48   52   57   61   64 
LCS_GDT     K      84     K      84     15   18   38    10   15   15   15   15   17   22   24   25   26   30   33   39   41   45   47   50   53   61   64 
LCS_GDT     K      85     K      85     15   16   38    10   15   15   15   15   17   22   24   25   26   30   33   39   41   45   47   50   56   61   64 
LCS_GDT     Y      86     Y      86     15   16   38    10   15   15   15   15   17   22   24   25   26   30   32   39   41   45   47   50   56   61   63 
LCS_GDT     V      87     V      87     15   16   38    10   15   15   15   15   16   17   20   24   26   30   32   34   38   41   43   48   52   57   61 
LCS_GDT     A      88     A      88     15   16   38    10   15   15   15   15   16   17   20   24   26   30   32   34   38   41   43   48   51   57   61 
LCS_GDT     S      89     S      89     15   16   38    10   15   15   15   15   16   17   20   24   26   30   32   34   38   41   43   48   51   57   61 
LCS_GDT     Y      90     Y      90     15   16   38    10   15   15   15   15   16   17   20   24   26   29   32   34   37   40   43   48   50   55   60 
LCS_GDT     L      91     L      91     15   16   38     9   15   15   15   15   16   17   20   22   25   27   30   34   37   40   43   48   50   54   60 
LCS_GDT     G      92     G      92     15   16   38     9   15   15   15   15   16   17   20   21   25   26   30   34   37   40   43   48   50   53   60 
LCS_GDT     V      93     V      93     15   16   38     9   15   15   15   15   16   17   20   23   25   29   31   34   37   40   43   48   50   53   60 
LCS_GDT     I      94     I      94     15   16   38     7   15   15   15   15   16   17   20   23   25   27   30   31   36   39   43   48   50   53   60 
LCS_GDT     M      95     M      95      4   16   38     3    3    6    7   11   12   15   20   24   26   29   32   34   38   41   44   48   52   57   62 
LCS_GDT     A      96     A      96      4   10   38     3    4    5    8   12   17   22   24   25   26   30   32   34   41   45   48   52   57   61   64 
LCS_GDT     S      97     S      97      4   10   38     3    4    5    8   13   17   22   24   25   26   30   33   39   41   45   48   52   57   61   64 
LCS_GDT     D      98     D      98      4   10   38     3    5    6    8   13   17   22   24   25   26   30   33   39   41   45   48   52   57   61   64 
LCS_GDT     G      99     G      99      4   10   38     3    5    6    7    9   10   22   24   25   26   30   33   39   41   45   48   52   57   61   64 
LCS_GDT     D     100     D     100      6   10   38     6    6    6    7    9   10   11   18   25   26   30   32   34   41   45   48   52   57   61   64 
LCS_GDT     I     101     I     101      6   10   38     6    6    6    7   11   13   16   20   24   26   30   32   34   38   41   45   50   57   61   64 
LCS_GDT     D     102     D     102      6   10   38     6    6    6    7   10   12   14   17   22   25   29   32   34   38   41   44   48   52   57   62 
LCS_GDT     D     103     D     103      6   10   37     6    6    6    7    9   10   11   17   21   22   26   27   29   33   34   43   48   52   57   61 
LCS_GDT     N     104     N     104      6   10   32     6    6    6    7    9   10   11   12   16   17   26   27   30   33   34   39   41   50   53   60 
LCS_GDT     E     105     E     105      6    8   32     6    6    6    7   10   15   17   18   21   24   26   30   34   38   41   44   48   52   57   61 
LCS_GDT     L     106     L     106      3   16   32     0    3    4    7   11   13   15   19   24   26   29   32   35   40   45   48   52   57   61   64 
LCS_GDT     A     107     A     107     15   16   32    11   13   15   15   16   17   18   20   22   24   27   28   34   37   42   46   49   53   60   64 
LCS_GDT     L     108     L     108     15   16   32    11   14   15   15   16   17   18   18   21   23   27   31   34   36   40   44   49   53   59   62 
LCS_GDT     W     109     W     109     15   16   32    11   14   15   15   16   17   18   20   22   26   29   33   39   41   45   48   52   57   61   64 
LCS_GDT     T     110     T     110     15   16   32    11   14   15   15   16   17   19   22   23   27   29   33   39   41   45   48   52   57   61   64 
LCS_GDT     L     111     L     111     15   16   32    11   14   15   15   20   22   24   24   25   27   30   32   34   37   45   48   52   57   61   64 
LCS_GDT     I     112     I     112     15   16   32    11   14   15   15   16   17   24   24   25   27   30   32   34   37   40   48   52   57   61   64 
LCS_GDT     S     113     S     113     15   16   32    11   14   15   15   16   17   20   23   25   28   30   33   39   41   45   48   52   57   61   64 
LCS_GDT     T     114     T     114     15   16   32    11   14   15   15   16   17   22   25   27   28   30   32   34   37   42   48   52   57   61   64 
LCS_GDT     L     115     L     115     15   16   32    11   14   15   15   16   20   24   25   27   28   29   32   33   36   37   39   42   45   52   61 
LCS_GDT     C     116     C     116     15   16   32    11   14   15   15   16   19   24   25   27   28   29   32   34   36   37   39   42   44   52   61 
LCS_GDT     G     117     G     117     15   16   32    11   14   15   15   16   17   18   20   22   23   27   28   32   34   37   39   42   44   58   63 
LCS_GDT     L     118     L     118     15   16   32    11   14   15   15   16   17   18   20   22   23   25   28   32   33   42   46   52   57   61   64 
LCS_GDT     P     119     P     119     15   16   32     8   14   15   15   16   17   18   20   22   23   25   27   29   31   34   43   50   56   61   64 
LCS_GDT     T     120     T     120     15   16   32     5   14   15   15   16   17   18   20   22   23   25   27   29   32   42   48   52   57   61   64 
LCS_GDT     M     121     M     121     15   16   32     5   14   15   15   16   17   18   20   22   23   25   27   29   31   32   33   37   41   58   63 
LCS_GDT     T     122     T     122     11   16   32    11   11   12   12   13   14   15   16   18   20   22   26   27   29   30   33   37   37   38   39 
LCS_GDT     V     123     V     123     11   12   32    11   11   12   12   13   14   15   16   18   20   25   25   27   29   30   33   37   39   42   46 
LCS_GDT     M     124     M     124     11   12   32    11   11   12   12   13   14   15   16   18   20   25   27   27   31   32   33   37   39   42   52 
LCS_GDT     E     125     E     125     11   12   32    11   11   12   12   15   17   18   20   22   23   25   27   29   31   32   33   37   43   50   60 
LCS_GDT     A     126     A     126     11   12   32    11   11   12   13   16   17   18   20   22   23   25   27   29   34   36   45   50   57   61   64 
LCS_GDT     I     127     I     127     11   12   32    11   11   12   12   13   14   15   18   22   23   26   30   35   38   45   48   52   57   61   64 
LCS_GDT     N     128     N     128     11   12   32    11   11   12   12   13   14   15   20   22   23   26   29   32   38   45   48   52   57   61   64 
LCS_GDT     N     129     N     129     11   12   32    11   11   12   12   13   14   17   20   22   23   29   33   35   38   45   48   52   57   61   64 
LCS_GDT     M     130     M     130     11   12   32    11   11   12   12   13   17   19   21   23   27   29   33   39   41   45   48   52   57   61   64 
LCS_GDT     K     131     K     131     11   12   32    11   11   12   12   13   16   19   21   23   27   29   33   39   41   45   48   52   57   61   64 
LCS_GDT     N     132     N     132     11   12   32    11   11   12   12   13   17   19   21   23   27   29   33   39   41   45   48   52   57   61   64 
LCS_AVERAGE  LCS_A:  15.90  (   9.33   12.34   26.02 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     12     15     16     17     20     22     24     25     27     28     30     33     39     41     45     48     52     57     61     64 
GDT PERCENT_CA   9.76  12.20  13.01  13.82  16.26  17.89  19.51  20.33  21.95  22.76  24.39  26.83  31.71  33.33  36.59  39.02  42.28  46.34  49.59  52.03
GDT RMS_LOCAL    0.34   0.50   0.66   1.35   1.70   1.84   2.02   2.50   2.76   2.90   3.22   3.98   4.66   4.81   5.24   5.96   6.12   6.59   6.77   7.06
GDT RMS_ALL_CA  23.73  21.40  23.48  20.66  19.72  19.44  19.48  21.43  21.87  21.31  18.81  15.02  15.31  15.32  14.87  14.50  14.40  13.96  14.40  14.01

#      Molecule1      Molecule2       DISTANCE
LGA    I      10      I      10         19.659
LGA    M      11      M      11         15.638
LGA    T      12      T      12         15.517
LGA    F      13      F      13         13.774
LGA    S      14      S      14         14.871
LGA    G      15      G      15         14.302
LGA    Q      16      Q      16          9.083
LGA    E      17      E      17          8.455
LGA    L      18      L      18          9.485
LGA    T      19      T      19         10.451
LGA    A      20      A      20          8.966
LGA    I      21      I      21          8.439
LGA    I      22      I      22         12.694
LGA    K      23      K      23         15.535
LGA    M      24      M      24         15.380
LGA    A      25      A      25         15.635
LGA    K      26      K      26         21.104
LGA    S      27      S      27         23.724
LGA    M      28      M      28         22.658
LGA    V      29      V      29         24.219
LGA    M      30      M      30         25.188
LGA    A      31      A      31         29.500
LGA    D      32      D      32         31.005
LGA    G      33      G      33         32.312
LGA    K      34      K      34         28.731
LGA    I      35      I      35         26.554
LGA    K      36      K      36         29.226
LGA    P      37      P      37         29.711
LGA    A      38      A      38         30.035
LGA    E      39      E      39         23.450
LGA    I      40      I      40         19.578
LGA    A      41      A      41         17.338
LGA    V      42      V      42         12.310
LGA    M      43      M      43          5.855
LGA    T      44      T      44          3.372
LGA    R      45      R      45          2.539
LGA    E      46      E      46          2.630
LGA    F      47      F      47          3.005
LGA    M      48      M      48          2.044
LGA    R      49      R      49          3.874
LGA    F      50      F      50          5.123
LGA    G      51      G      51          4.256
LGA    I      52      I      52          1.319
LGA    L      53      L      53          1.413
LGA    Q      54      Q      54          2.283
LGA    D      55      D      55          2.435
LGA    Q      56      Q      56          0.956
LGA    V      57      V      57          3.134
LGA    D      58      D      58          3.375
LGA    L      59      L      59          1.328
LGA    L      60      L      60          1.455
LGA    L      61      L      61          3.024
LGA    K      62      K      62          2.465
LGA    A      63      A      63          1.315
LGA    S      64      S      64          2.687
LGA    D      65      D      65          2.908
LGA    S      66      S      66          3.071
LGA    I      67      I      67          3.470
LGA    E      68      E      68          2.180
LGA    A      69      A      69          5.890
LGA    S      70      S      70         10.841
LGA    Q      71      Q      71          9.375
LGA    A      72      A      72         10.791
LGA    V      73      V      73         14.828
LGA    A      74      A      74         17.608
LGA    L      75      L      75         17.839
LGA    I      76      I      76         20.236
LGA    A      77      A      77         23.515
LGA    R      78      R      78         26.355
LGA    M      79      M      79         27.827
LGA    D      80      D      80         32.348
LGA    E      81      E      81         34.775
LGA    E      82      E      82         35.544
LGA    R      83      R      83         30.437
LGA    K      84      K      84         29.002
LGA    K      85      K      85         32.877
LGA    Y      86      Y      86         31.972
LGA    V      87      V      87         26.714
LGA    A      88      A      88         27.974
LGA    S      89      S      89         32.774
LGA    Y      90      Y      90         30.520
LGA    L      91      L      91         26.498
LGA    G      92      G      92         30.470
LGA    V      93      V      93         34.215
LGA    I      94      I      94         31.111
LGA    M      95      M      95         29.796
LGA    A      96      A      96         28.302
LGA    S      97      S      97         32.501
LGA    D      98      D      98         34.267
LGA    G      99      G      99         33.428
LGA    D     100      D     100         30.164
LGA    I     101      I     101         27.769
LGA    D     102      D     102         28.556
LGA    D     103      D     103         27.602
LGA    N     104      N     104         25.166
LGA    E     105      E     105         23.419
LGA    L     106      L     106         19.335
LGA    A     107      A     107         16.880
LGA    L     108      L     108         17.393
LGA    W     109      W     109         16.847
LGA    T     110      T     110         12.213
LGA    L     111      L     111          7.202
LGA    I     112      I     112          7.780
LGA    S     113      S     113          8.492
LGA    T     114      T     114          5.103
LGA    L     115      L     115          2.830
LGA    C     116      C     116          2.906
LGA    G     117      G     117         10.290
LGA    L     118      L     118         13.080
LGA    P     119      P     119         19.773
LGA    T     120      T     120         20.660
LGA    M     121      M     121         27.271
LGA    T     122      T     122         29.098
LGA    V     123      V     123         26.873
LGA    M     124      M     124         32.496
LGA    E     125      E     125         33.519
LGA    A     126      A     126         29.093
LGA    I     127      I     127         31.716
LGA    N     128      N     128         36.760
LGA    N     129      N     129         34.512
LGA    M     130      M     130         32.526
LGA    K     131      K     131         38.401
LGA    N     132      N     132         40.854

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  123  123    4.0     25    2.50    21.341    18.818     0.963

LGA_LOCAL      RMSD =  2.496  Number of atoms =   25  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 21.689  Number of atoms =  123 
Std_ALL_ATOMS  RMSD = 12.887  (standard rmsd on all 123 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.326466 * X  +  -0.615362 * Y  +   0.717460 * Z  +  24.791986
  Y_new =   0.787764 * X  +   0.596608 * Y  +   0.153252 * Z  +   3.152328
  Z_new =  -0.522348 * X  +   0.515158 * Y  +   0.679533 * Z  +  34.941284 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   0.648669   -2.492923  [ DEG:    37.1660   -142.8340 ]
  Theta =   0.549602    2.591990  [ DEG:    31.4899    148.5101 ]
  Phi   =   1.177920   -1.963672  [ DEG:    67.4899   -112.5101 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0307TS599_2-D1                               
REMARK     2: T0307_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0307TS599_2-D1.T0307_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  123  123   4.0   25   2.50  18.818    12.89
REMARK  ---------------------------------------------------------- 
MOLECULE T0307TS599_2-D1
PFRMAT TS                                                                       
TARGET T0307                                                                    
MODEL  2                                                                        
PARENT N/A                                                                      
ATOM     10  CA  ILE    10      22.640   7.711  32.414  1.00  0.00              
ATOM     11  CA  MET    11      22.394   5.930  35.712  1.00  0.00              
ATOM     12  CA  THR    12      25.316   6.138  38.075  1.00  0.00              
ATOM     13  CA  PHE    13      25.569   4.249  41.323  1.00  0.00              
ATOM     14  CA  SER    14      29.044   3.554  42.679  1.00  0.00              
ATOM     15  CA  GLY    15      28.794   5.419  45.979  1.00  0.00              
ATOM     16  CA  GLN    16      30.479   8.596  44.760  1.00  0.00              
ATOM     17  CA  GLU    17      29.101   9.021  41.291  1.00  0.00              
ATOM     18  CA  LEU    18      25.399   8.382  41.664  1.00  0.00              
ATOM     19  CA  THR    19      25.362  10.817  44.633  1.00  0.00              
ATOM     20  CA  ALA    20      27.010  13.459  42.454  1.00  0.00              
ATOM     21  CA  ILE    21      24.426  12.899  39.685  1.00  0.00              
ATOM     22  CA  ILE    22      21.529  13.226  42.156  1.00  0.00              
ATOM     23  CA  LYS    23      22.906  16.459  43.612  1.00  0.00              
ATOM     24  CA  MET    24      23.281  17.824  40.046  1.00  0.00              
ATOM     25  CA  ALA    25      19.700  16.795  39.218  1.00  0.00              
ATOM     26  CA  LYS    26      18.151  18.665  42.073  1.00  0.00              
ATOM     27  CA  SER    27      20.025  21.944  41.277  1.00  0.00              
ATOM     28  CA  MET    28      18.891  21.521  37.626  1.00  0.00              
ATOM     29  CA  VAL    29      15.264  20.729  37.929  1.00  0.00              
ATOM     30  CA  MET    30      13.125  18.262  36.040  1.00  0.00              
ATOM     31  CA  ALA    31       9.492  19.386  35.598  1.00  0.00              
ATOM     32  CA  ASP    32       7.670  16.291  34.649  1.00  0.00              
ATOM     33  CA  GLY    33       9.072  14.162  37.392  1.00  0.00              
ATOM     34  CA  LYS    34      10.949  11.939  35.009  1.00  0.00              
ATOM     35  CA  ILE    35      14.195  11.406  36.795  1.00  0.00              
ATOM     36  CA  LYS    36      14.014  10.272  40.443  1.00  0.00              
ATOM     37  CA  PRO    37      16.952  11.123  42.627  1.00  0.00              
ATOM     38  CA  ALA    38      18.124   7.501  43.161  1.00  0.00              
ATOM     39  CA  GLU    39      18.074   6.512  39.533  1.00  0.00              
ATOM     40  CA  ILE    40      19.332   9.410  37.549  1.00  0.00              
ATOM     41  CA  ALA    41      18.360   9.630  33.840  1.00  0.00              
ATOM     42  CA  VAL    42      19.775  12.232  31.537  1.00  0.00              
ATOM     43  CA  MET    43      18.197  13.019  28.140  1.00  0.00              
ATOM     44  CA  THR    44      19.602  16.137  26.525  1.00  0.00              
ATOM     45  CA  ARG    45      16.660  17.490  24.502  1.00  0.00              
ATOM     46  CA  GLU    46      14.426  16.600  27.421  1.00  0.00              
ATOM     47  CA  PHE    47      16.440  18.733  29.896  1.00  0.00              
ATOM     48  CA  MET    48      16.567  21.894  27.868  1.00  0.00              
ATOM     49  CA  ARG    49      12.781  21.424  27.221  1.00  0.00              
ATOM     50  CA  PHE    50      11.800  20.873  30.869  1.00  0.00              
ATOM     51  CA  GLY    51      13.617  23.981  31.949  1.00  0.00              
ATOM     52  CA  ILE    52      16.282  22.854  34.352  1.00  0.00              
ATOM     53  CA  LEU    53      18.917  25.395  33.180  1.00  0.00              
ATOM     54  CA  GLN    54      19.857  23.951  29.838  1.00  0.00              
ATOM     55  CA  ASP    55      23.425  25.269  29.782  1.00  0.00              
ATOM     56  CA  GLN    56      23.880  24.100  33.391  1.00  0.00              
ATOM     57  CA  VAL    57      22.687  20.563  32.582  1.00  0.00              
ATOM     58  CA  ASP    58      25.007  20.248  29.548  1.00  0.00              
ATOM     59  CA  LEU    59      27.891  21.332  31.795  1.00  0.00              
ATOM     60  CA  LEU    60      26.939  18.780  34.463  1.00  0.00              
ATOM     61  CA  LEU    61      26.593  15.984  31.887  1.00  0.00              
ATOM     62  CA  LYS    62      29.976  16.735  30.316  1.00  0.00              
ATOM     63  CA  ALA    63      31.829  16.899  33.654  1.00  0.00              
ATOM     64  CA  SER    64      30.354  13.669  35.057  1.00  0.00              
ATOM     65  CA  ASP    65      31.191  11.734  31.860  1.00  0.00              
ATOM     66  CA  SER    66      34.862  12.795  31.759  1.00  0.00              
ATOM     67  CA  ILE    67      35.669  11.753  35.364  1.00  0.00              
ATOM     68  CA  GLU    68      33.754   8.523  34.782  1.00  0.00              
ATOM     69  CA  ALA    69      35.374   7.340  31.523  1.00  0.00              
ATOM     70  CA  SER    70      38.936   7.497  32.749  1.00  0.00              
ATOM     71  CA  GLN    71      38.044   5.515  35.908  1.00  0.00              
ATOM     72  CA  ALA    72      36.196   2.871  33.906  1.00  0.00              
ATOM     73  CA  VAL    73      38.861   2.019  31.315  1.00  0.00              
ATOM     74  CA  ALA    74      41.430   1.660  34.109  1.00  0.00              
ATOM     75  CA  LEU    75      39.263  -0.592  36.288  1.00  0.00              
ATOM     76  CA  ILE    76      38.356  -2.953  33.415  1.00  0.00              
ATOM     77  CA  ALA    77      41.927  -3.128  32.270  1.00  0.00              
ATOM     78  CA  ARG    78      43.424  -3.905  35.628  1.00  0.00              
ATOM     79  CA  MET    79      40.876  -6.513  36.776  1.00  0.00              
ATOM     80  CA  ASP    80      40.744  -8.663  33.745  1.00  0.00              
ATOM     81  CA  GLU    81      41.162 -12.323  34.621  1.00  0.00              
ATOM     82  CA  GLU    82      38.940 -12.071  37.735  1.00  0.00              
ATOM     83  CA  ARG    83      36.282 -10.219  35.792  1.00  0.00              
ATOM     84  CA  LYS    84      36.207 -12.824  32.988  1.00  0.00              
ATOM     85  CA  LYS    85      35.830 -15.630  35.458  1.00  0.00              
ATOM     86  CA  TYR    86      33.027 -13.946  37.456  1.00  0.00              
ATOM     87  CA  VAL    87      31.111 -13.081  34.321  1.00  0.00              
ATOM     88  CA  ALA    88      31.379 -16.633  32.881  1.00  0.00              
ATOM     89  CA  SER    89      30.164 -18.266  36.046  1.00  0.00              
ATOM     90  CA  TYR    90      27.171 -16.036  36.484  1.00  0.00              
ATOM     91  CA  LEU    91      26.120 -16.398  32.831  1.00  0.00              
ATOM     92  CA  GLY    92      26.421 -20.216  32.945  1.00  0.00              
ATOM     93  CA  VAL    93      23.829 -19.996  35.790  1.00  0.00              
ATOM     94  CA  ILE    94      21.569 -17.306  34.477  1.00  0.00              
ATOM     95  CA  MET    95      20.015 -14.996  36.986  1.00  0.00              
ATOM     96  CA  ALA    96      17.455 -12.471  35.845  1.00  0.00              
ATOM     97  CA  SER    97      15.419 -10.580  38.463  1.00  0.00              
ATOM     98  CA  ASP    98      11.979 -12.051  37.796  1.00  0.00              
ATOM     99  CA  GLY    99      13.264 -15.637  37.892  1.00  0.00              
ATOM    100  CA  ASP   100      12.370 -16.631  34.340  1.00  0.00              
ATOM    101  CA  ILE   101      15.708 -17.595  32.978  1.00  0.00              
ATOM    102  CA  ASP   102      16.614 -20.876  31.480  1.00  0.00              
ATOM    103  CA  ASP   103      19.461 -22.718  33.078  1.00  0.00              
ATOM    104  CA  ASN   104      22.069 -21.804  30.430  1.00  0.00              
ATOM    105  CA  GLU   105      20.861 -18.258  29.846  1.00  0.00              
ATOM    106  CA  LEU   106      20.308 -14.853  31.302  1.00  0.00              
ATOM    107  CA  ALA   107      23.070 -12.903  33.093  1.00  0.00              
ATOM    108  CA  LEU   108      22.095 -10.344  35.657  1.00  0.00              
ATOM    109  CA  TRP   109      25.041  -7.894  35.830  1.00  0.00              
ATOM    110  CA  THR   110      25.021  -8.139  32.027  1.00  0.00              
ATOM    111  CA  LEU   111      21.380  -7.054  31.736  1.00  0.00              
ATOM    112  CA  ILE   112      21.819  -4.150  34.164  1.00  0.00              
ATOM    113  CA  SER   113      25.080  -3.020  32.683  1.00  0.00              
ATOM    114  CA  THR   114      23.615  -2.904  29.205  1.00  0.00              
ATOM    115  CA  LEU   115      20.575  -0.947  30.188  1.00  0.00              
ATOM    116  CA  CYS   116      22.457   1.626  32.185  1.00  0.00              
ATOM    117  CA  GLY   117      25.410   2.159  29.792  1.00  0.00              
ATOM    118  CA  LEU   118      27.879   1.156  32.454  1.00  0.00              
ATOM    119  CA  PRO   119      31.171  -0.381  31.568  1.00  0.00              
ATOM    120  CA  THR   120      31.014  -4.053  32.363  1.00  0.00              
ATOM    121  CA  MET   121      33.954  -4.419  34.777  1.00  0.00              
ATOM    122  CA  THR   122      32.869  -1.379  36.871  1.00  0.00              
ATOM    123  CA  VAL   123      29.276  -2.522  37.216  1.00  0.00              
ATOM    124  CA  MET   124      30.268  -6.085  38.224  1.00  0.00              
ATOM    125  CA  GLU   125      32.533  -4.790  40.963  1.00  0.00              
ATOM    126  CA  ALA   126      29.748  -2.513  42.269  1.00  0.00              
ATOM    127  CA  ILE   127      27.170  -5.310  42.285  1.00  0.00              
ATOM    128  CA  ASN   128      29.557  -7.643  44.189  1.00  0.00              
ATOM    129  CA  ASN   129      30.250  -4.991  46.772  1.00  0.00              
ATOM    130  CA  MET   130      26.591  -4.117  47.471  1.00  0.00              
ATOM    131  CA  LYS   131      25.916  -8.242  47.927  1.00  0.00              
ATOM    132  CA  ASN   132      28.873  -8.451  50.348  1.00  0.00              
TER                                                                             
END
