
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  123 (  123),  selected  123 , name T0307TS599_3-D1
# Molecule2: number of CA atoms  123 (  939),  selected  123 , name T0307_D1.pdb
# PARAMETERS: T0307TS599_3-D1.T0307_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    33        32 - 64          4.92    36.80
  LONGEST_CONTINUOUS_SEGMENT:    33        33 - 65          4.94    37.32
  LCS_AVERAGE:     22.89

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    19        11 - 29          1.46    29.43
  LCS_AVERAGE:     11.32

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    17        12 - 28          0.96    29.47
  LONGEST_CONTINUOUS_SEGMENT:    17        13 - 29          0.84    29.79
  LCS_AVERAGE:      9.35

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  123
LCS_GDT     I      10     I      10      5    8   24     3    4    5    5    5    6   11   13   15   18   19   20   20   20   20   20   21   22   23   38 
LCS_GDT     M      11     M      11      5   19   24     4    4    6    9   14   15   18   19   19   19   19   21   25   26   29   32   33   35   37   38 
LCS_GDT     T      12     T      12     17   19   24     4    4   11   17   18   18   18   19   19   19   20   22   23   25   28   32   33   35   37   38 
LCS_GDT     F      13     F      13     17   19   24     4    7    8   17   18   18   18   19   19   19   19   20   20   21   24   25   28   33   35   36 
LCS_GDT     S      14     S      14     17   19   24     4   15   16   17   18   18   18   19   19   19   19   20   21   22   24   24   28   29   31   33 
LCS_GDT     G      15     G      15     17   19   24     8   15   16   17   18   18   18   19   19   19   19   20   23   25   26   28   30   32   34   34 
LCS_GDT     Q      16     Q      16     17   19   24     5   15   16   17   18   18   18   19   19   19   19   20   23   25   26   28   30   32   34   34 
LCS_GDT     E      17     E      17     17   19   24    10   15   16   17   18   18   18   19   19   19   19   20   22   25   26   28   30   32   34   35 
LCS_GDT     L      18     L      18     17   19   24    10   15   16   17   18   18   18   19   19   19   19   20   23   25   26   28   30   32   34   36 
LCS_GDT     T      19     T      19     17   19   24    10   15   16   17   18   18   18   19   19   19   19   21   23   25   26   28   30   32   34   34 
LCS_GDT     A      20     A      20     17   19   24    10   15   16   17   18   18   18   19   19   19   19   21   23   25   26   28   30   32   34   36 
LCS_GDT     I      21     I      21     17   19   24    10   15   16   17   18   18   18   19   19   19   19   21   23   25   28   32   33   35   37   40 
LCS_GDT     I      22     I      22     17   19   24    10   15   16   17   18   18   18   19   19   19   20   21   23   26   26   28   30   32   37   40 
LCS_GDT     K      23     K      23     17   19   24    10   15   16   17   18   18   18   19   19   19   20   21   23   25   26   28   30   32   35   40 
LCS_GDT     M      24     M      24     17   19   24    10   15   16   17   18   18   18   19   19   19   21   24   26   26   29   32   33   35   37   42 
LCS_GDT     A      25     A      25     17   19   24    10   15   16   17   18   18   18   19   19   21   23   24   26   26   29   31   33   35   40   43 
LCS_GDT     K      26     K      26     17   19   24    10   15   16   17   18   18   18   19   19   20   23   24   25   26   29   30   32   35   40   43 
LCS_GDT     S      27     S      27     17   19   24    10   15   16   17   18   18   18   19   19   21   23   24   26   26   29   31   33   35   40   43 
LCS_GDT     M      28     M      28     17   19   24    10   15   16   17   18   18   18   19   19   21   23   24   26   26   29   31   33   35   40   43 
LCS_GDT     V      29     V      29     17   19   24     8   14   16   17   18   18   18   19   19   19   20   21   23   25   26   28   31   35   40   43 
LCS_GDT     M      30     M      30      6   17   24     4    5    6    6    8   11   13   16   18   19   20   21   23   27   31   34   37   39   40   43 
LCS_GDT     A      31     A      31      6    7   24     4    5    6    6    8    9    9   13   14   17   20   21   23   27   29   34   37   39   40   43 
LCS_GDT     D      32     D      32      6    7   33     4    5    6    6    8    9    9   13   14   17   21   25   27   29   31   34   37   39   40   41 
LCS_GDT     G      33     G      33      6    7   33     4    5    6    6    8    9   13   18   21   22   24   26   27   29   31   34   37   39   40   41 
LCS_GDT     K      34     K      34      6    7   33     4    5    6    6    8    9   16   18   21   22   24   26   27   29   31   34   37   39   39   40 
LCS_GDT     I      35     I      35      6    7   33     4    5    6    6    8   11   16   18   21   22   24   26   27   29   31   34   37   39   39   41 
LCS_GDT     K      36     K      36      6    7   33     4    5    6    6    6    7   12   17   21   22   24   26   27   29   31   34   37   39   40   41 
LCS_GDT     P      37     P      37      6    7   33     4    5    6    6    6    7    9   13   14   17   20   24   25   28   31   33   37   39   40   41 
LCS_GDT     A      38     A      38      6    7   33     4    5    6    6    6    7    9   15   16   21   24   26   27   29   31   34   37   39   40   43 
LCS_GDT     E      39     E      39      6    7   33     4    5    6    6    6   10   16   18   21   22   24   26   27   29   31   34   37   39   40   43 
LCS_GDT     I      40     I      40      3    7   33     3    3    3    4    7   11   14   17   21   22   24   26   28   30   31   34   37   39   40   43 
LCS_GDT     A      41     A      41      3   11   33     0    3    4    6    8   11   16   18   21   22   24   26   28   30   31   34   37   39   40   43 
LCS_GDT     V      42     V      42     10   11   33     6    7   10   11   11   11   16   18   22   25   26   27   28   30   31   34   37   39   40   43 
LCS_GDT     M      43     M      43     10   11   33     6    7   10   11   11   13   16   20   22   25   26   27   28   30   31   34   37   39   40   43 
LCS_GDT     T      44     T      44     10   11   33     6    7   10   11   11   11   14   20   22   25   26   27   28   30   31   34   37   39   40   43 
LCS_GDT     R      45     R      45     10   11   33     6    7   10   11   11   11   16   19   22   25   26   27   28   30   31   34   37   39   40   43 
LCS_GDT     E      46     E      46     10   11   33     6    7   10   11   11   11   16   19   22   25   26   27   28   30   31   34   37   39   40   43 
LCS_GDT     F      47     F      47     10   11   33     6    7   10   11   11   13   15   20   22   25   26   27   28   30   31   34   37   39   40   43 
LCS_GDT     M      48     M      48     10   11   33     4    7   10   11   11   13   16   20   22   25   26   27   28   30   31   34   37   39   40   43 
LCS_GDT     R      49     R      49     10   11   33     4    5   10   11   11   13   16   20   22   25   26   27   28   30   31   34   37   39   40   43 
LCS_GDT     F      50     F      50     10   11   33     4    6   10   11   11   11   16   17   22   24   26   27   28   30   31   34   37   39   40   43 
LCS_GDT     G      51     G      51     10   11   33     4    5   10   11   11   11   16   18   22   24   26   27   28   30   31   34   37   39   40   43 
LCS_GDT     I      52     I      52      6   11   33     4    5    7   11   11   11   16   17   21   22   24   26   28   30   31   34   37   39   40   43 
LCS_GDT     L      53     L      53      4    5   33     3    3    4    6    8   11   16   18   22   25   26   27   28   30   31   34   37   39   40   43 
LCS_GDT     Q      54     Q      54      6   15   33     4    5    8   11   12   15   16   20   22   25   26   27   28   30   31   34   37   39   40   43 
LCS_GDT     D      55     D      55     11   15   33     4    5    9   12   14   15   16   20   22   25   26   27   28   30   31   34   37   39   40   43 
LCS_GDT     Q      56     Q      56     12   15   33     5   10   12   13   14   15   16   20   22   25   26   27   28   30   31   34   37   39   40   43 
LCS_GDT     V      57     V      57     12   15   33     4   10   12   13   14   15   16   20   22   25   26   27   28   30   31   34   37   39   40   43 
LCS_GDT     D      58     D      58     12   15   33     5   10   12   13   14   15   16   20   22   25   26   27   28   30   31   34   37   39   40   43 
LCS_GDT     L      59     L      59     12   15   33     5   10   12   13   14   15   16   20   22   25   26   27   28   30   31   34   37   39   40   43 
LCS_GDT     L      60     L      60     12   15   33     5   10   12   13   14   15   16   20   22   25   26   27   28   30   31   34   37   39   40   43 
LCS_GDT     L      61     L      61     12   15   33     5   10   12   13   14   15   16   20   22   25   26   27   28   30   31   34   37   39   40   43 
LCS_GDT     K      62     K      62     12   15   33     5   10   12   13   14   15   16   20   22   25   26   27   28   30   31   34   37   39   40   43 
LCS_GDT     A      63     A      63     12   15   33     4   10   12   13   14   15   16   20   22   25   26   27   28   30   31   34   37   39   40   43 
LCS_GDT     S      64     S      64     12   15   33     5   10   12   13   14   15   16   20   22   25   26   27   28   30   31   34   37   39   40   43 
LCS_GDT     D      65     D      65     12   15   33     3   10   12   13   14   15   16   20   22   25   26   27   28   30   31   34   37   39   40   43 
LCS_GDT     S      66     S      66     12   15   32     3    9   12   13   14   15   15   20   22   25   26   27   28   30   31   34   37   39   40   43 
LCS_GDT     I      67     I      67     12   15   32     3    7   12   13   14   15   15   20   22   25   26   27   28   30   31   34   37   39   40   43 
LCS_GDT     E      68     E      68     12   15   32     6   11   12   13   14   15   16   20   22   25   26   27   28   30   31   34   37   39   40   43 
LCS_GDT     A      69     A      69     12   15   32     6   11   12   13   13   14   15   18   22   25   25   27   28   30   31   32   35   38   40   43 
LCS_GDT     S      70     S      70     12   14   32     6   11   12   13   13   14   15   17   19   23   24   26   27   29   30   32   34   36   40   43 
LCS_GDT     Q      71     Q      71     12   14   32     6   11   12   13   13   14   15   17   19   23   25   26   27   29   30   32   34   36   40   43 
LCS_GDT     A      72     A      72     12   14   32     8   11   12   13   13   14   15   16   19   21   24   26   27   29   30   32   33   36   40   43 
LCS_GDT     V      73     V      73     12   14   32     8   11   12   13   13   14   15   16   18   21   23   26   27   28   29   32   33   35   40   43 
LCS_GDT     A      74     A      74     12   14   23     8   11   12   13   13   14   15   16   18   21   23   24   27   28   32   35   37   37   40   42 
LCS_GDT     L      75     L      75     12   14   23     8   11   12   13   13   14   15   16   18   21   23   24   29   30   33   35   37   37   39   41 
LCS_GDT     I      76     I      76     12   14   26     8   11   12   13   13   14   15   16   18   21   23   24   26   28   33   35   37   37   39   41 
LCS_GDT     A      77     A      77     12   14   26     8   11   12   13   13   14   15   16   18   21   23   24   29   30   33   35   37   37   39   41 
LCS_GDT     R      78     R      78     12   14   26     8   11   12   13   13   14   15   16   18   21   23   25   29   30   33   35   37   37   39   41 
LCS_GDT     M      79     M      79     12   16   26     8   11   12   13   13   14   16   16   18   21   23   25   29   30   33   35   37   37   39   41 
LCS_GDT     D      80     D      80     15   16   26    13   15   15   15   15   15   16   16   18   21   23   25   27   30   33   35   37   37   38   40 
LCS_GDT     E      81     E      81     15   16   26    13   15   15   15   15   15   16   16   18   21   23   25   29   30   33   35   37   37   39   41 
LCS_GDT     E      82     E      82     15   16   26    13   15   15   15   15   15   16   16   18   21   23   24   26   28   31   35   36   37   38   40 
LCS_GDT     R      83     R      83     15   16   26    13   15   15   15   15   15   16   16   18   21   23   24   26   30   33   35   37   37   38   41 
LCS_GDT     K      84     K      84     15   16   26    13   15   15   15   15   15   16   16   18   21   23   25   29   30   33   35   37   37   39   41 
LCS_GDT     K      85     K      85     15   16   26    13   15   15   15   15   15   16   16   18   21   23   25   29   30   33   35   37   37   39   41 
LCS_GDT     Y      86     Y      86     15   16   26    13   15   15   15   15   15   16   16   18   21   23   25   29   30   33   35   37   37   39   41 
LCS_GDT     V      87     V      87     15   16   26    13   15   15   15   15   15   16   16   18   21   23   25   29   30   33   35   37   37   39   41 
LCS_GDT     A      88     A      88     15   16   26    13   15   15   15   15   15   16   16   17   21   23   25   29   30   33   35   37   37   39   41 
LCS_GDT     S      89     S      89     15   16   26    13   15   15   15   15   15   16   16   18   21   23   25   29   30   33   35   37   37   39   41 
LCS_GDT     Y      90     Y      90     15   16   26    13   15   15   15   15   15   16   16   18   21   23   25   29   30   33   35   37   37   39   41 
LCS_GDT     L      91     L      91     15   16   26    13   15   15   15   15   15   16   16   17   19   21   25   29   30   33   35   37   37   39   41 
LCS_GDT     G      92     G      92     15   16   26    13   15   15   15   15   15   16   16   17   21   23   25   29   29   33   35   37   37   39   41 
LCS_GDT     V      93     V      93     15   16   26    13   15   15   15   15   15   16   19   20   22   23   25   29   30   33   35   37   37   39   41 
LCS_GDT     I      94     I      94     15   16   26     8   15   15   15   15   15   16   16   20   22   23   25   29   30   33   35   37   37   39   41 
LCS_GDT     M      95     M      95      5   16   26     3    9   12   12   12   12   14   16   18   21   23   25   29   30   33   35   37   37   39   41 
LCS_GDT     A      96     A      96      5   12   26     3    4    9   11   11   11   13   15   18   21   23   25   29   30   33   35   37   37   39   41 
LCS_GDT     S      97     S      97      9   12   26     3    4    9   11   11   11   13   15   18   21   23   25   29   30   33   35   37   37   39   41 
LCS_GDT     D      98     D      98      9   12   26     3    6    9   11   11   11   13   14   16   19   22   25   27   30   33   35   37   37   38   41 
LCS_GDT     G      99     G      99      9   12   26     3    5    9   11   11   11   13   14   17   21   23   25   29   30   33   35   37   37   39   41 
LCS_GDT     D     100     D     100      9   12   26     5    6    9   11   11   11   13   15   18   21   23   25   29   30   33   35   37   37   39   41 
LCS_GDT     I     101     I     101      9   12   26     3    6    9   11   11   11   13   15   18   21   23   25   29   30   33   35   37   37   39   41 
LCS_GDT     D     102     D     102      9   12   26     5    6    9   11   11   11   13   14   16   21   23   25   29   30   33   35   37   37   39   41 
LCS_GDT     D     103     D     103      9   12   26     5    6    9   11   11   11   13   14   15   18   19   21   24   28   32   35   37   37   39   41 
LCS_GDT     N     104     N     104      9   12   27     5    6    9   11   11   11   13   14   15   18   19   21   25   27   32   35   37   37   39   41 
LCS_GDT     E     105     E     105      9   12   27     5    6    9   11   11   11   13   14   16   20   23   25   29   30   33   35   37   37   39   41 
LCS_GDT     L     106     L     106      3   12   27     1    4    4    4    8   11   13   13   15   19   23   25   26   28   30   35   37   37   39   41 
LCS_GDT     A     107     A     107      3   15   27     3    3    4    5    8   11   14   15   17   19   23   25   26   28   29   31   32   33   34   36 
LCS_GDT     L     108     L     108     14   15   27     8   12   14   14   15   15   16   16   19   22   23   24   26   28   29   31   32   33   34   35 
LCS_GDT     W     109     W     109     14   15   27     9   12   14   14   15   15   16   19   20   22   23   25   26   28   29   31   32   33   34   35 
LCS_GDT     T     110     T     110     14   15   27     9   12   14   14   15   15   16   19   20   22   23   25   26   28   29   31   32   33   34   35 
LCS_GDT     L     111     L     111     14   15   27     9   12   14   14   15   15   16   19   20   22   23   25   26   28   29   31   32   33   34   35 
LCS_GDT     I     112     I     112     14   15   27     9   12   14   14   15   15   16   19   20   22   23   25   26   28   29   31   32   33   34   35 
LCS_GDT     S     113     S     113     14   15   27     9   12   14   14   15   15   16   19   20   22   23   25   26   28   29   31   32   33   34   35 
LCS_GDT     T     114     T     114     14   15   27     9   12   14   14   15   15   16   19   20   22   23   25   26   28   29   31   32   33   34   35 
LCS_GDT     L     115     L     115     14   15   27     9   12   14   14   15   15   16   19   20   22   23   25   26   28   29   31   32   33   34   35 
LCS_GDT     C     116     C     116     14   15   27     9   12   14   14   15   15   16   19   20   22   23   25   26   28   29   31   32   33   34   35 
LCS_GDT     G     117     G     117     14   15   27     9   12   14   14   15   15   16   19   20   22   23   25   26   28   29   31   32   33   34   35 
LCS_GDT     L     118     L     118     14   15   27     9   12   14   14   15   15   16   19   20   22   23   25   26   28   29   31   32   33   34   35 
LCS_GDT     P     119     P     119     14   15   27     7   12   14   14   15   15   16   19   20   22   23   25   26   28   29   31   32   33   34   35 
LCS_GDT     T     120     T     120     14   15   27     4    8   14   14   15   15   16   19   20   22   23   25   26   28   29   31   32   33   34   35 
LCS_GDT     M     121     M     121     14   15   27     3    8   14   14   15   15   16   19   20   22   23   25   26   28   29   31   32   33   34   35 
LCS_GDT     T     122     T     122     10   15   27    10   10   12   12   12   12   13   13   16   17   22   24   25   26   28   31   32   32   34   34 
LCS_GDT     V     123     V     123     10   11   27    10   10   12   12   12   12   13   13   13   16   22   22   24   26   28   31   32   37   39   40 
LCS_GDT     M     124     M     124     10   11   27    10   10   12   12   12   12   13   13   14   18   22   24   25   27   29   31   32   37   39   41 
LCS_GDT     E     125     E     125     10   11   27    10   10   12   12   13   14   16   19   20   22   23   25   26   28   29   31   32   35   39   40 
LCS_GDT     A     126     A     126     10   11   27    10   10   12   12   15   15   16   19   20   22   23   25   26   28   29   31   34   37   39   40 
LCS_GDT     I     127     I     127     10   11   27    10   10   12   12   12   12   15   19   20   22   23   25   29   30   33   35   37   37   39   41 
LCS_GDT     N     128     N     128     10   11   27    10   10   12   12   12   12   14   17   20   22   23   25   29   30   33   35   37   37   39   41 
LCS_GDT     N     129     N     129     10   11   27    10   10   12   12   12   12   15   19   20   22   23   25   27   28   32   35   37   37   39   41 
LCS_GDT     M     130     M     130     10   11   27    10   10   12   12   12   13   16   19   20   22   23   25   29   30   33   35   37   37   39   41 
LCS_GDT     K     131     K     131     10   11   27    10   10   12   12   12   12   13   17   19   21   23   25   29   30   33   35   37   37   39   41 
LCS_GDT     N     132     N     132      0   11   27     0    0    0    0    3    7   10   15   18   21   23   25   29   30   33   35   37   37   39   41 
LCS_AVERAGE  LCS_A:  14.52  (   9.35   11.32   22.89 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     13     15     16     17     18     18     18     20     22     25     26     27     29     30     33     35     37     39     40     43 
GDT PERCENT_CA  10.57  12.20  13.01  13.82  14.63  14.63  14.63  16.26  17.89  20.33  21.14  21.95  23.58  24.39  26.83  28.46  30.08  31.71  32.52  34.96
GDT RMS_LOCAL    0.30   0.42   0.65   0.84   1.04   1.04   1.04   2.79   2.98   3.42   3.66   3.75   4.73   4.51   5.13   5.38   5.72   5.98   6.69   7.22
GDT RMS_ALL_CA  32.15  31.89  29.95  29.79  29.67  29.67  29.67  36.77  35.36  35.12  36.03  35.66  31.20  35.18  30.81  30.87  30.67  34.78  33.23  30.77

#      Molecule1      Molecule2       DISTANCE
LGA    I      10      I      10         17.938
LGA    M      11      M      11         15.608
LGA    T      12      T      12         16.450
LGA    F      13      F      13         18.257
LGA    S      14      S      14         22.711
LGA    G      15      G      15         25.520
LGA    Q      16      Q      16         23.951
LGA    E      17      E      17         18.380
LGA    L      18      L      18         16.996
LGA    T      19      T      19         19.512
LGA    A      20      A      20         16.409
LGA    I      21      I      21         12.737
LGA    I      22      I      22         15.033
LGA    K      23      K      23         14.600
LGA    M      24      M      24         11.436
LGA    A      25      A      25         12.985
LGA    K      26      K      26         14.948
LGA    S      27      S      27         11.799
LGA    M      28      M      28         13.669
LGA    V      29      V      29         17.618
LGA    M      30      M      30         16.952
LGA    A      31      A      31         18.674
LGA    D      32      D      32         23.789
LGA    G      33      G      33         22.593
LGA    K      34      K      34         24.094
LGA    I      35      I      35         21.523
LGA    K      36      K      36         23.073
LGA    P      37      P      37         23.814
LGA    A      38      A      38         21.874
LGA    E      39      E      39         15.925
LGA    I      40      I      40         12.402
LGA    A      41      A      41         11.848
LGA    V      42      V      42          6.862
LGA    M      43      M      43          1.331
LGA    T      44      T      44          3.951
LGA    R      45      R      45          5.321
LGA    E      46      E      46          4.340
LGA    F      47      F      47          3.656
LGA    M      48      M      48          3.072
LGA    R      49      R      49          2.471
LGA    F      50      F      50          5.961
LGA    G      51      G      51          6.835
LGA    I      52      I      52          8.396
LGA    L      53      L      53          5.868
LGA    Q      54      Q      54          2.141
LGA    D      55      D      55          1.958
LGA    Q      56      Q      56          1.858
LGA    V      57      V      57          3.249
LGA    D      58      D      58          3.197
LGA    L      59      L      59          1.240
LGA    L      60      L      60          2.178
LGA    L      61      L      61          3.660
LGA    K      62      K      62          2.950
LGA    A      63      A      63          1.269
LGA    S      64      S      64          2.363
LGA    D      65      D      65          3.475
LGA    S      66      S      66          3.974
LGA    I      67      I      67          3.641
LGA    E      68      E      68          2.373
LGA    A      69      A      69          4.943
LGA    S      70      S      70         10.397
LGA    Q      71      Q      71          9.363
LGA    A      72      A      72         10.129
LGA    V      73      V      73         13.756
LGA    A      74      A      74         17.249
LGA    L      75      L      75         17.526
LGA    I      76      I      76         19.699
LGA    A      77      A      77         23.029
LGA    R      78      R      78         25.795
LGA    M      79      M      79         27.257
LGA    D      80      D      80         32.441
LGA    E      81      E      81         36.666
LGA    E      82      E      82         39.308
LGA    R      83      R      83         36.428
LGA    K      84      K      84         36.210
LGA    K      85      K      85         41.603
LGA    Y      86      Y      86         42.725
LGA    V      87      V      87         39.645
LGA    A      88      A      88         41.736
LGA    S      89      S      89         47.461
LGA    Y      90      Y      90         46.859
LGA    L      91      L      91         44.603
LGA    G      92      G      92         49.141
LGA    V      93      V      93         53.893
LGA    I      94      I      94         52.454
LGA    M      95      M      95         53.836
LGA    A      96      A      96         56.989
LGA    S      97      S      97         63.732
LGA    D      98      D      98         66.762
LGA    G      99      G      99         62.775
LGA    D     100      D     100         56.899
LGA    I     101      I     101         51.055
LGA    D     102      D     102         46.882
LGA    D     103      D     103         40.745
LGA    N     104      N     104         39.392
LGA    E     105      E     105         44.206
LGA    L     106      L     106         45.409
LGA    A     107      A     107         45.406
LGA    L     108      L     108         47.251
LGA    W     109      W     109         51.954
LGA    T     110      T     110         53.194
LGA    L     111      L     111         47.432
LGA    I     112      I     112         46.773
LGA    S     113      S     113         51.851
LGA    T     114      T     114         49.945
LGA    L     115      L     115         45.232
LGA    C     116      C     116         48.478
LGA    G     117      G     117         52.617
LGA    L     118      L     118         56.458
LGA    P     119      P     119         61.163
LGA    T     120      T     120         60.637
LGA    M     121      M     121         65.162
LGA    T     122      T     122         65.403
LGA    V     123      V     123         63.132
LGA    M     124      M     124         66.781
LGA    E     125      E     125         66.896
LGA    A     126      A     126         62.129
LGA    I     127      I     127         62.642
LGA    N     128      N     128         66.437
LGA    N     129      N     129         64.383
LGA    M     130      M     130         60.551
LGA    K     131      K     131         63.394
LGA    N     132      N     132         63.634

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  123  123    4.0     20    2.79    17.683    15.914     0.693

LGA_LOCAL      RMSD =  2.787  Number of atoms =   20  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 36.435  Number of atoms =  123 
Std_ALL_ATOMS  RMSD = 20.188  (standard rmsd on all 123 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.543374 * X  +  -0.492082 * Y  +  -0.680147 * Z  +  36.403423
  Y_new =   0.830380 * X  +   0.196012 * Y  +   0.521583 * Z  +  -5.530440
  Z_new =  -0.123344 * X  +  -0.848195 * Y  +   0.515123 * Z  +  34.741673 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -1.025015    2.116578  [ DEG:   -58.7290    121.2710 ]
  Theta =   0.123659    3.017933  [ DEG:     7.0852    172.9148 ]
  Phi   =   0.991357   -2.150236  [ DEG:    56.8006   -123.1994 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0307TS599_3-D1                               
REMARK     2: T0307_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0307TS599_3-D1.T0307_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  123  123   4.0   20   2.79  15.914    20.19
REMARK  ---------------------------------------------------------- 
MOLECULE T0307TS599_3-D1
PFRMAT TS                                                                       
TARGET T0307                                                                    
MODEL  3                                                                        
PARENT N/A                                                                      
ATOM     10  CA  ILE    10      21.356   9.880  31.889  1.00  0.00              
ATOM     11  CA  MET    11      20.063   6.886  30.078  1.00  0.00              
ATOM     12  CA  THR    12      18.172   7.700  26.859  1.00  0.00              
ATOM     13  CA  PHE    13      17.986   5.177  24.022  1.00  0.00              
ATOM     14  CA  SER    14      17.488   6.727  20.593  1.00  0.00              
ATOM     15  CA  GLY    15      18.532   4.128  17.970  1.00  0.00              
ATOM     16  CA  GLN    16      21.881   5.668  17.083  1.00  0.00              
ATOM     17  CA  GLU    17      23.051   6.500  20.638  1.00  0.00              
ATOM     18  CA  LEU    18      22.509   3.225  22.577  1.00  0.00              
ATOM     19  CA  THR    19      24.131   1.237  19.716  1.00  0.00              
ATOM     20  CA  ALA    20      27.212   3.502  19.763  1.00  0.00              
ATOM     21  CA  ILE    21      27.450   3.089  23.549  1.00  0.00              
ATOM     22  CA  ILE    22      27.227  -0.724  23.300  1.00  0.00              
ATOM     23  CA  LYS    23      30.076  -0.795  20.705  1.00  0.00              
ATOM     24  CA  MET    24      32.132   1.423  23.052  1.00  0.00              
ATOM     25  CA  ALA    25      31.376  -0.919  26.003  1.00  0.00              
ATOM     26  CA  LYS    26      32.771  -3.883  24.141  1.00  0.00              
ATOM     27  CA  SER    27      35.991  -1.976  23.256  1.00  0.00              
ATOM     28  CA  MET    28      36.437  -0.917  26.953  1.00  0.00              
ATOM     29  CA  VAL    29      35.619  -4.151  28.818  1.00  0.00              
ATOM     30  CA  MET    30      34.282  -3.918  32.389  1.00  0.00              
ATOM     31  CA  ALA    31      35.142  -6.897  34.675  1.00  0.00              
ATOM     32  CA  ASP    32      34.091  -5.612  38.127  1.00  0.00              
ATOM     33  CA  GLY    33      30.793  -4.270  36.845  1.00  0.00              
ATOM     34  CA  LYS    34      31.761  -0.655  36.560  1.00  0.00              
ATOM     35  CA  ILE    35      30.323   0.060  33.057  1.00  0.00              
ATOM     36  CA  LYS    36      26.871  -1.192  32.404  1.00  0.00              
ATOM     37  CA  PRO    37      25.226  -2.713  29.497  1.00  0.00              
ATOM     38  CA  ALA    38      22.237  -0.309  29.637  1.00  0.00              
ATOM     39  CA  GLU    39      24.105   2.952  29.357  1.00  0.00              
ATOM     40  CA  ILE    40      22.309   4.979  26.618  1.00  0.00              
ATOM     41  CA  ALA    41      22.241   8.719  26.220  1.00  0.00              
ATOM     42  CA  VAL    42      19.866  10.833  24.221  1.00  0.00              
ATOM     43  CA  MET    43      21.222  14.173  23.144  1.00  0.00              
ATOM     44  CA  THR    44      18.035  15.967  22.016  1.00  0.00              
ATOM     45  CA  ARG    45      16.155  14.735  25.103  1.00  0.00              
ATOM     46  CA  GLU    46      18.867  16.112  27.402  1.00  0.00              
ATOM     47  CA  PHE    47      18.962  19.527  25.838  1.00  0.00              
ATOM     48  CA  MET    48      15.194  20.005  25.978  1.00  0.00              
ATOM     49  CA  ARG    49      15.263  18.949  29.642  1.00  0.00              
ATOM     50  CA  PHE    50      17.816  21.609  30.549  1.00  0.00              
ATOM     51  CA  GLY    51      15.757  24.280  28.782  1.00  0.00              
ATOM     52  CA  ILE    52      17.769  25.292  25.777  1.00  0.00              
ATOM     53  CA  LEU    53      21.248  25.103  27.282  1.00  0.00              
ATOM     54  CA  GLN    54      20.736  26.974  30.498  1.00  0.00              
ATOM     55  CA  ASP    55      24.375  27.254  31.692  1.00  0.00              
ATOM     56  CA  GLN    56      23.726  24.908  34.637  1.00  0.00              
ATOM     57  CA  VAL    57      21.882  22.067  32.816  1.00  0.00              
ATOM     58  CA  ASP    58      24.347  21.600  29.985  1.00  0.00              
ATOM     59  CA  LEU    59      27.398  21.956  32.300  1.00  0.00              
ATOM     60  CA  LEU    60      26.820  19.528  35.213  1.00  0.00              
ATOM     61  CA  LEU    61      25.712  16.904  32.632  1.00  0.00              
ATOM     62  CA  LYS    62      28.779  17.364  30.416  1.00  0.00              
ATOM     63  CA  ALA    63      31.317  17.220  33.248  1.00  0.00              
ATOM     64  CA  SER    64      29.779  14.064  34.758  1.00  0.00              
ATOM     65  CA  ASP    65      30.248  12.163  31.538  1.00  0.00              
ATOM     66  CA  SER    66      33.864  12.979  30.932  1.00  0.00              
ATOM     67  CA  ILE    67      35.419  11.993  34.282  1.00  0.00              
ATOM     68  CA  GLU    68      33.215   8.880  34.456  1.00  0.00              
ATOM     69  CA  ALA    69      34.100   7.438  31.045  1.00  0.00              
ATOM     70  CA  SER    70      37.825   7.652  31.451  1.00  0.00              
ATOM     71  CA  GLN    71      37.700   6.027  34.906  1.00  0.00              
ATOM     72  CA  ALA    72      35.540   3.126  33.745  1.00  0.00              
ATOM     73  CA  VAL    73      37.569   1.739  30.873  1.00  0.00              
ATOM     74  CA  ALA    74      40.696   2.001  33.051  1.00  0.00              
ATOM     75  CA  LEU    75      39.175   0.215  36.033  1.00  0.00              
ATOM     76  CA  ILE    76      37.956  -2.710  33.869  1.00  0.00              
ATOM     77  CA  ALA    77      41.438  -3.042  32.297  1.00  0.00              
ATOM     78  CA  ARG    78      43.028  -3.276  35.771  1.00  0.00              
ATOM     79  CA  MET    79      40.537  -5.928  36.941  1.00  0.00              
ATOM     80  CA  ASP    80      41.086  -8.241  33.924  1.00  0.00              
ATOM     81  CA  GLU    81      44.869  -8.185  34.148  1.00  0.00              
ATOM     82  CA  GLU    82      44.756  -9.008  37.870  1.00  0.00              
ATOM     83  CA  ARG    83      42.412 -11.937  37.245  1.00  0.00              
ATOM     84  CA  LYS    84      44.669 -13.287  34.518  1.00  0.00              
ATOM     85  CA  LYS    85      47.709 -13.017  36.792  1.00  0.00              
ATOM     86  CA  TYR    86      46.004 -14.809  39.700  1.00  0.00              
ATOM     87  CA  VAL    87      44.773 -17.468  37.323  1.00  0.00              
ATOM     88  CA  ALA    88      48.253 -18.034  35.792  1.00  0.00              
ATOM     89  CA  SER    89      49.722 -18.408  39.268  1.00  0.00              
ATOM     90  CA  TYR    90      47.026 -20.918  40.290  1.00  0.00              
ATOM     91  CA  LEU    91      47.457 -23.046  37.215  1.00  0.00              
ATOM     92  CA  GLY    92      51.215 -23.081  37.798  1.00  0.00              
ATOM     93  CA  VAL    93      50.685 -24.309  41.391  1.00  0.00              
ATOM     94  CA  ILE    94      47.986 -27.054  41.156  1.00  0.00              
ATOM     95  CA  MET    95      47.311 -28.594  44.520  1.00  0.00              
ATOM     96  CA  ALA    96      44.410 -30.706  45.656  1.00  0.00              
ATOM     97  CA  SER    97      44.965 -33.532  48.156  1.00  0.00              
ATOM     98  CA  ASP    98      43.662 -36.347  45.965  1.00  0.00              
ATOM     99  CA  GLY    99      45.135 -34.832  42.807  1.00  0.00              
ATOM    100  CA  ASP   100      41.935 -33.619  41.216  1.00  0.00              
ATOM    101  CA  ILE   101      42.546 -29.930  40.854  1.00  0.00              
ATOM    102  CA  ASP   102      39.710 -27.602  41.616  1.00  0.00              
ATOM    103  CA  ASP   103      40.293 -24.749  39.175  1.00  0.00              
ATOM    104  CA  ASN   104      40.917 -22.187  41.961  1.00  0.00              
ATOM    105  CA  GLU   105      43.454 -24.281  43.866  1.00  0.00              
ATOM    106  CA  LEU   106      46.906 -22.782  44.251  1.00  0.00              
ATOM    107  CA  ALA   107      49.646 -25.141  45.328  1.00  0.00              
ATOM    108  CA  LEU   108      53.005 -24.595  46.880  1.00  0.00              
ATOM    109  CA  TRP   109      55.445 -27.405  46.008  1.00  0.00              
ATOM    110  CA  THR   110      56.267 -28.600  49.551  1.00  0.00              
ATOM    111  CA  LEU   111      52.529 -28.538  50.348  1.00  0.00              
ATOM    112  CA  ILE   112      51.343 -30.128  47.149  1.00  0.00              
ATOM    113  CA  SER   113      53.911 -32.882  47.176  1.00  0.00              
ATOM    114  CA  THR   114      53.034 -33.684  50.782  1.00  0.00              
ATOM    115  CA  LEU   115      49.245 -33.810  50.199  1.00  0.00              
ATOM    116  CA  CYS   116      49.554 -36.023  47.132  1.00  0.00              
ATOM    117  CA  GLY   117      52.278 -38.315  48.424  1.00  0.00              
ATOM    118  CA  LEU   118      54.716 -37.147  45.715  1.00  0.00              
ATOM    119  CA  PRO   119      58.330 -36.866  46.665  1.00  0.00              
ATOM    120  CA  THR   120      59.126 -33.172  47.393  1.00  0.00              
ATOM    121  CA  MET   121      61.624 -32.795  44.565  1.00  0.00              
ATOM    122  CA  THR   122      59.481 -34.364  41.844  1.00  0.00              
ATOM    123  CA  VAL   123      56.366 -32.246  42.218  1.00  0.00              
ATOM    124  CA  MET   124      58.485 -29.090  42.712  1.00  0.00              
ATOM    125  CA  GLU   125      60.436 -29.804  39.495  1.00  0.00              
ATOM    126  CA  ALA   126      57.114 -30.221  37.642  1.00  0.00              
ATOM    127  CA  ILE   127      55.924 -26.881  39.100  1.00  0.00              
ATOM    128  CA  ASN   128      59.157 -25.166  37.921  1.00  0.00              
ATOM    129  CA  ASN   129      58.592 -26.545  34.444  1.00  0.00              
ATOM    130  CA  MET   130      54.946 -25.315  34.304  1.00  0.00              
ATOM    131  CA  LYS   131      56.630 -21.541  35.184  1.00  0.00              
ATOM    132  CA  ASN   132      54.041 -23.885  34.077  1.00  0.00              
TER                                                                             
END
