
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  123 (  123),  selected  123 , name T0307TS599_4-D1
# Molecule2: number of CA atoms  123 (  939),  selected  123 , name T0307_D1.pdb
# PARAMETERS: T0307TS599_4-D1.T0307_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    37        95 - 131         4.99    36.93
  LCS_AVERAGE:     25.87

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    21        10 - 30          1.84    26.40
  LCS_AVERAGE:     12.18

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    20        10 - 29          0.85    26.14
  LCS_AVERAGE:     10.01

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  123
LCS_GDT     I      10     I      10     20   21   26     4    5   11   19   20   20   20   20   21   21   22   22   23   23   23   26   27   34   37   40 
LCS_GDT     M      11     M      11     20   21   26    11   17   18   19   20   20   20   20   21   21   22   22   23   23   23   31   32   34   37   39 
LCS_GDT     T      12     T      12     20   21   26    13   17   18   19   20   20   20   20   21   21   22   22   24   25   26   28   31   33   36   37 
LCS_GDT     F      13     F      13     20   21   26     7   11   18   19   20   20   20   20   21   21   22   22   24   25   26   28   31   33   36   37 
LCS_GDT     S      14     S      14     20   21   26     7   17   18   19   20   20   20   20   21   21   22   22   23   23   23   26   27   30   31   33 
LCS_GDT     G      15     G      15     20   21   26    13   17   18   19   20   20   20   20   21   21   22   22   23   23   25   26   27   30   31   34 
LCS_GDT     Q      16     Q      16     20   21   26    10   17   18   19   20   20   20   20   21   21   22   22   23   23   25   26   27   30   31   34 
LCS_GDT     E      17     E      17     20   21   26    12   17   18   19   20   20   20   20   21   21   22   22   24   25   25   28   30   32   36   37 
LCS_GDT     L      18     L      18     20   21   26    13   17   18   19   20   20   20   20   21   21   22   22   23   23   25   27   30   32   36   37 
LCS_GDT     T      19     T      19     20   21   26    13   17   18   19   20   20   20   20   21   21   22   22   23   23   25   26   27   30   31   34 
LCS_GDT     A      20     A      20     20   21   26    13   17   18   19   20   20   20   20   21   21   22   22   24   25   26   28   30   33   36   37 
LCS_GDT     I      21     I      21     20   21   26    13   17   18   19   20   20   20   20   21   21   22   22   25   28   30   32   33   35   37   42 
LCS_GDT     I      22     I      22     20   21   26    13   17   18   19   20   20   20   20   21   21   22   22   24   26   29   31   34   38   41   43 
LCS_GDT     K      23     K      23     20   21   26    13   17   18   19   20   20   20   20   21   21   22   22   24   25   29   31   34   38   43   46 
LCS_GDT     M      24     M      24     20   21   26    13   17   18   19   20   20   20   20   21   21   22   25   27   29   30   36   39   42   45   46 
LCS_GDT     A      25     A      25     20   21   26    13   17   18   19   20   20   20   20   21   21   22   24   28   32   35   37   39   42   45   46 
LCS_GDT     K      26     K      26     20   21   26    13   17   18   19   20   20   20   20   21   21   22   26   29   32   35   37   39   42   45   46 
LCS_GDT     S      27     S      27     20   21   26    13   17   18   19   20   20   20   20   21   21   23   26   29   32   35   37   39   42   45   46 
LCS_GDT     M      28     M      28     20   21   26    13   17   18   19   20   20   20   20   21   21   22   25   29   32   35   37   39   42   45   46 
LCS_GDT     V      29     V      29     20   21   26    11   17   18   19   20   20   20   20   21   21   22   22   23   32   35   37   39   42   45   46 
LCS_GDT     M      30     M      30      5   21   26     4    5    5    7    9   10   15   19   21   21   22   22   24   30   33   36   37   38   45   45 
LCS_GDT     A      31     A      31      5    7   26     4    5    5    7    8    9   10   12   15   21   22   22   24   28   32   35   37   38   39   42 
LCS_GDT     D      32     D      32      5    7   31     4    5    5    7    8    9   10   12   15   17   19   23   28   31   33   36   37   38   39   41 
LCS_GDT     G      33     G      33      5    7   31     4    5    5    7    8    9   11   14   18   22   25   27   29   31   33   36   37   38   39   41 
LCS_GDT     K      34     K      34      6    7   31     4    6    6    7    8    9   11   14   18   22   25   27   29   31   33   36   37   38   39   41 
LCS_GDT     I      35     I      35      6    7   31     4    6    6    7    8    9   11   14   18   22   25   27   29   31   33   36   37   38   40   43 
LCS_GDT     K      36     K      36      6    7   31     4    6    6    6    6    8   11   13   15   21   25   27   29   31   33   36   39   42   45   46 
LCS_GDT     P      37     P      37      6    7   31     4    6    6    6    6    8   11   13   15   15   18   22   25   30   35   37   39   42   45   46 
LCS_GDT     A      38     A      38      6    7   31     4    6    6    6    6    8   11   13   15   19   23   26   29   31   33   36   38   42   44   46 
LCS_GDT     E      39     E      39      6    7   31     4    6    6    6    6    8   11   14   18   22   25   27   29   31   33   36   37   40   44   46 
LCS_GDT     I      40     I      40      3    7   31     3    3    3    4    6    8   11   15   18   22   25   27   29   31   33   36   37   38   44   46 
LCS_GDT     A      41     A      41      3    4   31     0    3    4    4    6   10   13   15   18   22   25   27   29   31   33   36   37   38   40   43 
LCS_GDT     V      42     V      42      3   10   31     3    3    4    5    9   13   15   16   18   22   25   27   29   31   33   36   37   38   39   42 
LCS_GDT     M      43     M      43      9   15   31     5    6   10   13   17   20   23   23   23   25   26   27   29   31   33   36   37   38   39   42 
LCS_GDT     T      44     T      44      9   15   31     5    6   10   13   17   21   23   23   24   25   26   27   29   31   33   36   37   38   39   42 
LCS_GDT     R      45     R      45      9   15   31     5    6   10   13   17   21   23   23   24   25   26   27   29   31   33   36   37   38   39   42 
LCS_GDT     E      46     E      46      9   15   31     5    6   10   13   17   21   23   23   24   25   26   27   29   31   33   36   37   38   39   42 
LCS_GDT     F      47     F      47      9   15   31     5    6   10   13   17   21   23   23   24   25   26   27   29   31   33   36   37   38   39   42 
LCS_GDT     M      48     M      48      9   15   31     3    6   10   13   16   20   23   23   24   25   26   27   29   31   33   36   37   38   39   42 
LCS_GDT     R      49     R      49      9   15   31     3    5   10   13   15   17   20   22   24   25   26   27   29   30   33   36   37   38   39   41 
LCS_GDT     F      50     F      50      9   15   31     3    5   10   13   15   17   20   22   23   25   26   27   29   31   33   36   37   38   39   41 
LCS_GDT     G      51     G      51      9   15   31     3    5   10   13   15   17   20   22   24   25   26   27   29   31   33   36   37   38   39   42 
LCS_GDT     I      52     I      52      7   17   31     3    5    9   13   17   21   23   23   24   25   26   27   29   31   33   36   37   38   39   42 
LCS_GDT     L      53     L      53     14   17   31     3   10   13   15   17   21   23   23   24   25   26   27   28   31   33   36   37   38   39   42 
LCS_GDT     Q      54     Q      54     14   17   31     4    8   13   15   17   21   23   23   24   25   26   27   29   31   33   36   37   38   39   42 
LCS_GDT     D      55     D      55     14   17   31     4    8   13   15   17   21   23   23   24   25   26   27   29   31   33   36   37   38   39   42 
LCS_GDT     Q      56     Q      56     14   17   31     9   12   13   15   17   21   23   23   24   25   26   27   29   31   33   36   37   38   39   42 
LCS_GDT     V      57     V      57     14   17   31     9   12   13   15   17   21   23   23   24   25   26   27   29   31   33   36   37   38   39   42 
LCS_GDT     D      58     D      58     14   17   31     9   12   13   15   17   21   23   23   24   25   26   27   29   31   33   36   37   38   39   42 
LCS_GDT     L      59     L      59     14   17   31     9   12   13   15   17   21   23   23   24   25   26   27   29   31   33   36   37   38   40   45 
LCS_GDT     L      60     L      60     14   17   31     9   12   13   15   17   21   23   23   24   25   26   27   29   31   33   36   37   38   40   45 
LCS_GDT     L      61     L      61     14   17   31     9   12   13   15   17   21   23   23   24   25   26   27   29   31   33   36   37   38   42   45 
LCS_GDT     K      62     K      62     14   17   31     9   12   13   15   17   21   23   23   24   25   26   26   29   31   33   36   38   42   44   46 
LCS_GDT     A      63     A      63     14   17   31     9   12   13   15   17   21   23   23   24   25   26   26   29   31   35   37   39   42   45   46 
LCS_GDT     S      64     S      64     14   17   31     9   12   13   15   17   21   23   23   24   25   26   26   28   32   35   37   39   42   45   46 
LCS_GDT     D      65     D      65     14   17   31     7   12   13   15   17   21   23   23   24   25   26   26   29   32   35   37   39   42   45   46 
LCS_GDT     S      66     S      66     14   17   31     7   12   13   15   17   21   23   23   24   25   26   26   29   32   35   37   39   42   45   46 
LCS_GDT     I      67     I      67     13   17   31     4   12   13   15   17   21   23   23   24   25   26   26   29   32   35   37   39   42   45   46 
LCS_GDT     E      68     E      68     13   17   31     6   11   12   13   17   21   23   23   24   25   26   26   29   32   35   37   39   42   45   46 
LCS_GDT     A      69     A      69     12   15   31     6   11   12   12   13   15   16   21   23   24   25   26   29   32   35   37   39   42   45   46 
LCS_GDT     S      70     S      70     12   14   31     6   11   12   12   13   15   16   17   19   22   25   26   29   32   35   37   39   42   45   46 
LCS_GDT     Q      71     Q      71     12   14   31     6   11   12   12   13   15   17   20   23   24   25   26   29   32   35   37   39   42   45   46 
LCS_GDT     A      72     A      72     12   14   31     7   11   12   12   13   15   16   17   19   22   23   26   29   32   35   37   39   42   45   46 
LCS_GDT     V      73     V      73     12   14   31     7   11   12   12   13   15   16   17   19   22   23   26   29   32   35   37   39   42   45   46 
LCS_GDT     A      74     A      74     12   14   24     7   11   12   12   13   15   16   17   19   22   23   26   29   32   35   37   39   42   45   46 
LCS_GDT     L      75     L      75     12   14   24     7   11   12   12   13   15   16   17   19   22   23   26   29   32   35   37   39   42   45   46 
LCS_GDT     I      76     I      76     12   14   31     7   11   12   12   13   15   16   17   19   22   23   26   29   32   35   37   39   42   45   46 
LCS_GDT     A      77     A      77     12   14   31     7   11   12   12   13   15   16   17   19   22   23   26   31   33   35   37   39   42   45   46 
LCS_GDT     R      78     R      78     12   14   31     7   11   12   12   13   15   16   17   19   22   25   29   33   34   35   37   39   42   45   46 
LCS_GDT     M      79     M      79     12   16   31     6   11   12   12   13   15   16   17   20   25   30   32   33   34   35   37   39   42   45   46 
LCS_GDT     D      80     D      80     15   16   31    11   14   15   15   15   15   16   17   20   25   30   32   33   34   35   37   37   42   45   46 
LCS_GDT     E      81     E      81     15   16   31    13   14   15   15   15   15   16   17   20   25   30   32   33   34   35   37   39   42   45   46 
LCS_GDT     E      82     E      82     15   16   31    13   14   15   15   15   15   16   18   20   25   30   32   33   34   35   37   39   42   45   46 
LCS_GDT     R      83     R      83     15   16   31    13   14   15   15   15   15   16   18   20   25   30   32   33   34   35   37   39   42   45   46 
LCS_GDT     K      84     K      84     15   16   31    13   14   15   15   15   15   16   18   20   25   30   32   33   34   35   37   39   42   45   46 
LCS_GDT     K      85     K      85     15   16   31    13   14   15   15   15   15   16   18   20   25   30   32   33   34   35   37   39   42   45   46 
LCS_GDT     Y      86     Y      86     15   16   31    13   14   15   15   15   15   16   18   20   25   30   32   33   34   35   37   39   42   45   46 
LCS_GDT     V      87     V      87     15   16   31    13   14   15   15   15   15   16   18   20   25   30   32   33   34   35   37   37   41   43   46 
LCS_GDT     A      88     A      88     15   16   31    13   14   15   15   15   15   16   18   20   25   30   32   33   34   35   37   37   40   43   46 
LCS_GDT     S      89     S      89     15   16   31    13   14   15   15   15   15   16   18   20   25   30   32   33   34   35   37   37   41   43   46 
LCS_GDT     Y      90     Y      90     15   16   31    13   14   15   15   15   15   16   18   20   25   30   32   33   34   35   37   37   41   43   46 
LCS_GDT     L      91     L      91     15   16   31    13   14   15   15   15   15   16   18   20   25   30   32   33   34   35   37   37   39   40   45 
LCS_GDT     G      92     G      92     15   16   31    13   14   15   15   15   15   16   16   20   25   30   32   33   34   35   37   37   39   41   46 
LCS_GDT     V      93     V      93     15   16   31    13   14   15   15   15   15   16   16   19   23   26   29   33   34   35   37   37   40   43   46 
LCS_GDT     I      94     I      94     15   16   31     8   14   15   15   15   15   16   16   20   25   30   32   33   34   35   37   37   39   43   46 
LCS_GDT     M      95     M      95      3   16   37     3    3    5    7    9   14   17   20   22   25   30   32   33   34   35   37   38   41   43   46 
LCS_GDT     A      96     A      96      4   10   37     3    4    5    8   11   13   16   19   22   25   30   32   33   34   35   37   38   41   43   46 
LCS_GDT     S      97     S      97      4   10   37     3    4    4    7    9   12   14   18   20   25   30   32   33   34   35   37   38   41   43   46 
LCS_GDT     D      98     D      98      4   10   37     3    5    5    7   10   13   16   18   20   25   30   32   33   34   35   37   38   41   43   46 
LCS_GDT     G      99     G      99      4   10   37     3    5    5    8   10   11   16   18   20   25   30   32   33   34   35   37   38   41   43   46 
LCS_GDT     D     100     D     100      6   10   37     6    6    6    7   10   11   14   16   20   25   30   32   33   34   35   37   38   41   43   46 
LCS_GDT     I     101     I     101      6   10   37     6    6    6    8   11   13   16   18   21   25   30   32   33   34   35   37   38   41   43   46 
LCS_GDT     D     102     D     102      6   10   37     6    6    6    8   11   13   16   19   22   25   30   32   33   34   35   37   38   41   43   46 
LCS_GDT     D     103     D     103      6   10   37     6    6    6    8   10   11   14   17   22   25   30   32   33   34   35   37   38   41   43   46 
LCS_GDT     N     104     N     104      6   10   37     6    6    6    8   10   11   12   16   20   25   30   32   33   34   35   37   38   40   43   46 
LCS_GDT     E     105     E     105      6    8   37     6    6    6    8   11   13   17   20   22   25   30   32   33   34   35   37   38   41   43   46 
LCS_GDT     L     106     L     106      3   16   37     0    4    5    6    9   13   16   20   22   25   27   30   31   34   35   37   38   41   43   46 
LCS_GDT     A     107     A     107     15   16   37    14   15   15   15   16   17   17   18   22   25   27   29   31   34   35   36   38   41   43   46 
LCS_GDT     L     108     L     108     15   16   37    14   15   15   15   16   17   17   17   22   25   27   29   31   34   35   36   38   41   43   46 
LCS_GDT     W     109     W     109     15   16   37    14   15   15   15   16   17   17   20   22   25   27   29   31   34   35   36   38   41   43   46 
LCS_GDT     T     110     T     110     15   16   37    14   15   15   15   16   17   17   20   22   25   27   29   31   34   35   36   38   41   43   46 
LCS_GDT     L     111     L     111     15   16   37    14   15   15   15   16   17   17   20   22   25   27   29   31   34   35   36   38   41   43   46 
LCS_GDT     I     112     I     112     15   16   37    14   15   15   15   16   17   17   20   22   25   27   29   31   34   35   36   38   41   43   46 
LCS_GDT     S     113     S     113     15   16   37    14   15   15   15   16   17   17   20   22   25   27   29   31   34   35   36   38   41   43   46 
LCS_GDT     T     114     T     114     15   16   37    14   15   15   15   16   17   17   20   22   25   27   29   31   34   35   36   38   41   43   46 
LCS_GDT     L     115     L     115     15   16   37    14   15   15   15   16   17   17   20   22   25   27   29   31   34   35   36   38   41   43   46 
LCS_GDT     C     116     C     116     15   16   37    14   15   15   15   16   17   17   20   22   25   27   29   31   34   35   36   38   41   43   46 
LCS_GDT     G     117     G     117     15   16   37    14   15   15   15   16   17   17   20   22   25   27   29   31   34   35   36   38   41   43   46 
LCS_GDT     L     118     L     118     15   16   37    14   15   15   15   16   17   17   20   22   25   27   29   31   34   35   36   38   41   43   46 
LCS_GDT     P     119     P     119     15   16   37    14   15   15   15   16   17   17   20   22   25   27   29   31   34   35   36   39   42   45   46 
LCS_GDT     T     120     T     120     15   16   37    14   15   15   15   16   17   17   20   22   25   27   29   31   34   35   37   39   42   45   46 
LCS_GDT     M     121     M     121     15   16   37     4   15   15   15   16   17   17   20   22   25   27   29   31   34   35   37   39   42   45   46 
LCS_GDT     T     122     T     122     10   16   37    10   10   10   10   10   10   14   16   18   22   23   27   31   32   35   37   39   42   45   46 
LCS_GDT     V     123     V     123     10   11   37    10   10   10   10   10   10   11   13   18   22   23   27   31   32   35   37   39   42   45   46 
LCS_GDT     M     124     M     124     10   11   37    10   10   10   10   10   10   11   13   17   21   25   29   31   33   35   37   39   42   45   46 
LCS_GDT     E     125     E     125     10   11   37    10   10   10   12   16   17   17   20   22   25   27   29   31   34   35   37   39   42   45   46 
LCS_GDT     A     126     A     126     10   11   37    10   10   10   14   16   17   17   20   22   25   27   29   31   34   35   37   39   42   45   46 
LCS_GDT     I     127     I     127     10   11   37    10   10   10   10   10   13   16   20   22   25   30   32   33   34   35   37   38   41   45   46 
LCS_GDT     N     128     N     128     10   11   37    10   10   10   10   10   13   16   20   22   25   30   32   33   34   35   37   39   42   45   46 
LCS_GDT     N     129     N     129     10   11   37    10   10   10   10   11   14   17   20   22   25   30   32   33   34   35   37   39   42   45   46 
LCS_GDT     M     130     M     130     10   11   37    10   10   10   10   11   14   17   20   22   25   29   32   33   34   35   37   38   41   43   46 
LCS_GDT     K     131     K     131     10   11   37    10   10   10   10   10   10   15   18   21   25   30   32   33   34   35   37   38   41   43   46 
LCS_GDT     N     132     N     132      0   11   34     0    0    1    3    4    8   13   18   19   20   29   32   33   34   35   37   38   40   45   46 
LCS_AVERAGE  LCS_A:  16.02  (  10.01   12.18   25.87 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     14     17     18     19     20     21     23     23     24     25     30     32     33     34     35     37     39     42     45     46 
GDT PERCENT_CA  11.38  13.82  14.63  15.45  16.26  17.07  18.70  18.70  19.51  20.33  24.39  26.02  26.83  27.64  28.46  30.08  31.71  34.15  36.59  37.40
GDT RMS_LOCAL    0.28   0.45   0.55   0.69   0.85   1.95   2.16   2.16   2.65   2.72   3.93   4.14   4.25   4.41   4.62   5.00   5.85   6.16   6.42   6.71
GDT RMS_ALL_CA  33.19  25.98  26.03  26.03  26.14  33.59  33.69  33.69  34.64  34.42  29.25  29.27  29.37  29.04  28.76  28.13  20.01  20.12  20.29  19.85

#      Molecule1      Molecule2       DISTANCE
LGA    I      10      I      10         12.376
LGA    M      11      M      11         12.291
LGA    T      12      T      12         15.379
LGA    F      13      F      13         16.450
LGA    S      14      S      14         21.590
LGA    G      15      G      15         23.846
LGA    Q      16      Q      16         22.201
LGA    E      17      E      17         16.870
LGA    L      18      L      18         16.006
LGA    T      19      T      19         17.913
LGA    A      20      A      20         14.838
LGA    I      21      I      21         11.716
LGA    I      22      I      22         13.841
LGA    K      23      K      23         12.888
LGA    M      24      M      24         11.052
LGA    A      25      A      25         12.889
LGA    K      26      K      26         13.877
LGA    S      27      S      27         11.759
LGA    M      28      M      28         14.861
LGA    V      29      V      29         18.072
LGA    M      30      M      30         16.823
LGA    A      31      A      31         18.869
LGA    D      32      D      32         23.811
LGA    G      33      G      33         22.240
LGA    K      34      K      34         23.523
LGA    I      35      I      35         21.180
LGA    K      36      K      36         22.914
LGA    P      37      P      37         22.901
LGA    A      38      A      38         21.309
LGA    E      39      E      39         16.587
LGA    I      40      I      40         12.921
LGA    A      41      A      41         13.832
LGA    V      42      V      42          9.128
LGA    M      43      M      43          3.528
LGA    T      44      T      44          2.573
LGA    R      45      R      45          1.828
LGA    E      46      E      46          1.107
LGA    F      47      F      47          2.563
LGA    M      48      M      48          2.915
LGA    R      49      R      49          5.933
LGA    F      50      F      50          6.713
LGA    G      51      G      51          5.479
LGA    I      52      I      52          2.180
LGA    L      53      L      53          2.047
LGA    Q      54      Q      54          1.851
LGA    D      55      D      55          2.256
LGA    Q      56      Q      56          2.301
LGA    V      57      V      57          3.023
LGA    D      58      D      58          3.431
LGA    L      59      L      59          2.041
LGA    L      60      L      60          1.552
LGA    L      61      L      61          2.556
LGA    K      62      K      62          2.535
LGA    A      63      A      63          1.315
LGA    S      64      S      64          1.213
LGA    D      65      D      65          2.643
LGA    S      66      S      66          2.986
LGA    I      67      I      67          2.312
LGA    E      68      E      68          2.316
LGA    A      69      A      69          7.553
LGA    S      70      S      70         11.661
LGA    Q      71      Q      71          9.324
LGA    A      72      A      72         12.326
LGA    V      73      V      73         17.173
LGA    A      74      A      74         18.550
LGA    L      75      L      75         18.724
LGA    I      76      I      76         22.897
LGA    A      77      A      77         26.176
LGA    R      78      R      78         27.128
LGA    M      79      M      79         29.556
LGA    D      80      D      80         36.137
LGA    E      81      E      81         39.643
LGA    E      82      E      82         41.247
LGA    R      83      R      83         39.478
LGA    K      84      K      84         40.067
LGA    K      85      K      85         44.591
LGA    Y      86      Y      86         45.144
LGA    V      87      V      87         43.096
LGA    A      88      A      88         45.818
LGA    S      89      S      89         50.441
LGA    Y      90      Y      90         49.550
LGA    L      91      L      91         48.147
LGA    G      92      G      92         52.876
LGA    V      93      V      93         56.619
LGA    I      94      I      94         54.663
LGA    M      95      M      95         53.638
LGA    A      96      A      96         57.321
LGA    S      97      S      97         60.655
LGA    D      98      D      98         67.585
LGA    G      99      G      99         66.605
LGA    D     100      D     100         66.121
LGA    I     101      I     101         60.603
LGA    D     102      D     102         60.630
LGA    D     103      D     103         56.992
LGA    N     104      N     104         52.333
LGA    E     105      E     105         52.085
LGA    L     106      L     106         50.506
LGA    A     107      A     107         43.504
LGA    L     108      L     108         41.657
LGA    W     109      W     109         40.304
LGA    T     110      T     110         39.035
LGA    L     111      L     111         37.108
LGA    I     112      I     112         36.258
LGA    S     113      S     113         35.500
LGA    T     114      T     114         34.780
LGA    L     115      L     115         33.910
LGA    C     116      C     116         33.978
LGA    G     117      G     117         33.533
LGA    L     118      L     118         34.383
LGA    P     119      P     119         36.114
LGA    T     120      T     120         38.789
LGA    M     121      M     121         40.158
LGA    T     122      T     122         40.273
LGA    V     123      V     123         44.373
LGA    M     124      M     124         50.015
LGA    E     125      E     125         46.435
LGA    A     126      A     126         45.011
LGA    I     127      I     127         52.045
LGA    N     128      N     128         53.907
LGA    N     129      N     129         49.593
LGA    M     130      M     130         52.804
LGA    K     131      K     131         59.339
LGA    N     132      N     132         58.080

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  123  123    4.0     23    2.16    19.512    17.767     1.019

LGA_LOCAL      RMSD =  2.158  Number of atoms =   23  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 33.415  Number of atoms =  123 
Std_ALL_ATOMS  RMSD = 17.591  (standard rmsd on all 123 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.200817 * X  +  -0.474151 * Y  +  -0.857236 * Z  +  35.577148
  Y_new =   0.691590 * X  +  -0.551136 * Y  +   0.466854 * Z  +  -2.756410
  Z_new =  -0.693813 * X  +  -0.686608 * Y  +   0.217241 * Z  +  33.329193 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -1.264365    1.877227  [ DEG:   -72.4428    107.5572 ]
  Theta =   0.766770    2.374823  [ DEG:    43.9327    136.0673 ]
  Phi   =   1.288198   -1.853395  [ DEG:    73.8083   -106.1917 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0307TS599_4-D1                               
REMARK     2: T0307_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0307TS599_4-D1.T0307_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  123  123   4.0   23   2.16  17.767    17.59
REMARK  ---------------------------------------------------------- 
MOLECULE T0307TS599_4-D1
PFRMAT TS                                                                       
TARGET T0307                                                                    
MODEL  4                                                                        
PARENT N/A                                                                      
ATOM     10  CA  ILE    10      15.128  13.739  31.502  1.00  0.00              
ATOM     11  CA  MET    11      17.690  11.275  30.050  1.00  0.00              
ATOM     12  CA  THR    12      16.999   9.936  26.607  1.00  0.00              
ATOM     13  CA  PHE    13      18.693   6.910  25.170  1.00  0.00              
ATOM     14  CA  SER    14      18.523   7.354  21.442  1.00  0.00              
ATOM     15  CA  GLY    15      20.184   4.792  19.245  1.00  0.00              
ATOM     16  CA  GLN    16      23.245   6.899  18.382  1.00  0.00              
ATOM     17  CA  GLU    17      24.118   7.888  21.952  1.00  0.00              
ATOM     18  CA  LEU    18      23.889   4.293  23.158  1.00  0.00              
ATOM     19  CA  THR    19      26.149   3.011  20.330  1.00  0.00              
ATOM     20  CA  ALA    20      28.760   5.698  21.038  1.00  0.00              
ATOM     21  CA  ILE    21      28.743   4.818  24.761  1.00  0.00              
ATOM     22  CA  ILE    22      29.175   1.098  23.900  1.00  0.00              
ATOM     23  CA  LYS    23      32.069   1.817  21.587  1.00  0.00              
ATOM     24  CA  MET    24      33.705   3.889  24.372  1.00  0.00              
ATOM     25  CA  ALA    25      33.190   1.128  26.962  1.00  0.00              
ATOM     26  CA  LYS    26      34.723  -1.555  24.812  1.00  0.00              
ATOM     27  CA  SER    27      37.875   0.490  23.950  1.00  0.00              
ATOM     28  CA  MET    28      38.317   1.207  27.716  1.00  0.00              
ATOM     29  CA  VAL    29      37.782  -2.316  29.124  1.00  0.00              
ATOM     30  CA  MET    30      35.898  -2.716  32.394  1.00  0.00              
ATOM     31  CA  ALA    31      37.070  -5.513  34.795  1.00  0.00              
ATOM     32  CA  ASP    32      35.672  -4.295  38.157  1.00  0.00              
ATOM     33  CA  GLY    33      32.201  -3.891  36.637  1.00  0.00              
ATOM     34  CA  LYS    34      32.223  -0.158  36.082  1.00  0.00              
ATOM     35  CA  ILE    35      31.087  -0.117  32.463  1.00  0.00              
ATOM     36  CA  LYS    36      28.127  -2.163  31.329  1.00  0.00              
ATOM     37  CA  PRO    37      27.508  -2.793  27.635  1.00  0.00              
ATOM     38  CA  ALA    38      24.115  -1.066  27.657  1.00  0.00              
ATOM     39  CA  GLU    39      25.148   2.177  29.289  1.00  0.00              
ATOM     40  CA  ILE    40      23.208   4.743  27.215  1.00  0.00              
ATOM     41  CA  ALA    41      21.888   8.106  28.555  1.00  0.00              
ATOM     42  CA  VAL    42      22.250  11.261  26.487  1.00  0.00              
ATOM     43  CA  MET    43      19.558  13.983  26.239  1.00  0.00              
ATOM     44  CA  THR    44      20.992  17.465  26.488  1.00  0.00              
ATOM     45  CA  ARG    45      18.931  19.194  23.812  1.00  0.00              
ATOM     46  CA  GLU    46      15.706  17.809  25.208  1.00  0.00              
ATOM     47  CA  PHE    47      16.501  18.922  28.767  1.00  0.00              
ATOM     48  CA  MET    48      17.363  22.468  27.555  1.00  0.00              
ATOM     49  CA  ARG    49      14.143  22.496  25.519  1.00  0.00              
ATOM     50  CA  PHE    50      12.041  21.748  28.674  1.00  0.00              
ATOM     51  CA  GLY    51      13.770  24.497  30.569  1.00  0.00              
ATOM     52  CA  ILE    52      15.177  22.716  33.553  1.00  0.00              
ATOM     53  CA  LEU    53      18.311  24.880  33.928  1.00  0.00              
ATOM     54  CA  GLN    54      19.756  25.056  30.392  1.00  0.00              
ATOM     55  CA  ASP    55      23.309  25.768  31.621  1.00  0.00              
ATOM     56  CA  GLN    56      22.749  23.022  34.211  1.00  0.00              
ATOM     57  CA  VAL    57      21.858  20.266  31.692  1.00  0.00              
ATOM     58  CA  ASP    58      24.574  20.509  29.005  1.00  0.00              
ATOM     59  CA  LEU    59      27.104  20.978  31.878  1.00  0.00              
ATOM     60  CA  LEU    60      26.014  17.791  33.734  1.00  0.00              
ATOM     61  CA  LEU    61      26.290  15.864  30.450  1.00  0.00              
ATOM     62  CA  LYS    62      29.794  17.172  29.646  1.00  0.00              
ATOM     63  CA  ALA    63      30.867  16.269  33.198  1.00  0.00              
ATOM     64  CA  SER    64      29.437  12.733  32.982  1.00  0.00              
ATOM     65  CA  ASP    65      31.641  11.954  29.981  1.00  0.00              
ATOM     66  CA  SER    66      34.729  13.278  31.817  1.00  0.00              
ATOM     67  CA  ILE    67      34.462  11.416  35.119  1.00  0.00              
ATOM     68  CA  GLU    68      33.673   8.159  33.322  1.00  0.00              
ATOM     69  CA  ALA    69      36.704   8.271  31.023  1.00  0.00              
ATOM     70  CA  SER    70      39.233   8.917  33.713  1.00  0.00              
ATOM     71  CA  GLN    71      37.943   6.144  35.990  1.00  0.00              
ATOM     72  CA  ALA    72      37.895   3.504  33.280  1.00  0.00              
ATOM     73  CA  VAL    73      41.437   3.737  31.909  1.00  0.00              
ATOM     74  CA  ALA    74      42.738   3.702  35.473  1.00  0.00              
ATOM     75  CA  LEU    75      40.687   0.660  36.441  1.00  0.00              
ATOM     76  CA  ILE    76      41.845  -1.359  33.443  1.00  0.00              
ATOM     77  CA  ALA    77      45.442  -0.565  34.121  1.00  0.00              
ATOM     78  CA  ARG    78      45.138  -1.676  37.796  1.00  0.00              
ATOM     79  CA  MET    79      43.429  -5.015  37.008  1.00  0.00              
ATOM     80  CA  ASP    80      46.110  -5.868  34.391  1.00  0.00              
ATOM     81  CA  GLU    81      49.003  -5.033  36.768  1.00  0.00              
ATOM     82  CA  GLU    82      47.469  -7.221  39.515  1.00  0.00              
ATOM     83  CA  ARG    83      47.037 -10.098  37.036  1.00  0.00              
ATOM     84  CA  LYS    84      50.690  -9.688  35.947  1.00  0.00              
ATOM     85  CA  LYS    85      51.971  -9.732  39.515  1.00  0.00              
ATOM     86  CA  TYR    86      49.951 -12.893  40.287  1.00  0.00              
ATOM     87  CA  VAL    87      51.235 -14.594  37.144  1.00  0.00              
ATOM     88  CA  ALA    88      54.944 -13.827  37.897  1.00  0.00              
ATOM     89  CA  SER    89      54.555 -15.163  41.415  1.00  0.00              
ATOM     90  CA  TYR    90      52.876 -18.333  40.189  1.00  0.00              
ATOM     91  CA  LEU    91      55.460 -19.040  37.433  1.00  0.00              
ATOM     92  CA  GLY    92      58.216 -18.374  39.941  1.00  0.00              
ATOM     93  CA  VAL    93      56.633 -21.028  42.224  1.00  0.00              
ATOM     94  CA  ILE    94      55.435 -23.859  39.958  1.00  0.00              
ATOM     95  CA  MET    95      52.525 -25.783  41.350  1.00  0.00              
ATOM     96  CA  ALA    96      51.381 -29.043  39.883  1.00  0.00              
ATOM     97  CA  SER    97      48.624 -31.078  41.590  1.00  0.00              
ATOM     98  CA  ASP    98      50.551 -33.951  43.230  1.00  0.00              
ATOM     99  CA  GLY    99      53.089 -31.669  44.858  1.00  0.00              
ATOM    100  CA  ASP   100      56.207 -32.838  43.011  1.00  0.00              
ATOM    101  CA  ILE   101      57.196 -29.585  41.503  1.00  0.00              
ATOM    102  CA  ASP   102      60.643 -28.156  41.817  1.00  0.00              
ATOM    103  CA  ASP   103      60.805 -24.587  43.065  1.00  0.00              
ATOM    104  CA  ASN   104      61.531 -23.015  39.627  1.00  0.00              
ATOM    105  CA  GLU   105      59.167 -25.183  37.679  1.00  0.00              
ATOM    106  CA  LEU   106      55.904 -26.640  36.803  1.00  0.00              
ATOM    107  CA  ALA   107      52.541 -25.021  37.166  1.00  0.00              
ATOM    108  CA  LEU   108      49.459 -27.221  36.611  1.00  0.00              
ATOM    109  CA  TRP   109      46.678 -24.687  36.032  1.00  0.00              
ATOM    110  CA  THR   110      49.267 -22.822  33.949  1.00  0.00              
ATOM    111  CA  LEU   111      49.725 -25.831  31.663  1.00  0.00              
ATOM    112  CA  ILE   112      45.977 -26.368  31.257  1.00  0.00              
ATOM    113  CA  SER   113      45.408 -22.645  30.779  1.00  0.00              
ATOM    114  CA  THR   114      47.912 -22.569  27.987  1.00  0.00              
ATOM    115  CA  LEU   115      46.415 -25.494  26.161  1.00  0.00              
ATOM    116  CA  CYS   116      42.817 -24.248  26.641  1.00  0.00              
ATOM    117  CA  GLY   117      43.437 -20.610  26.008  1.00  0.00              
ATOM    118  CA  LEU   118      42.534 -19.582  29.601  1.00  0.00              
ATOM    119  CA  PRO   119      44.023 -16.225  30.297  1.00  0.00              
ATOM    120  CA  THR   120      46.716 -16.171  32.888  1.00  0.00              
ATOM    121  CA  MET   121      45.095 -13.698  35.393  1.00  0.00              
ATOM    122  CA  THR   122      42.041 -16.012  35.472  1.00  0.00              
ATOM    123  CA  VAL   123      43.950 -19.311  35.837  1.00  0.00              
ATOM    124  CA  MET   124      46.082 -17.965  38.645  1.00  0.00              
ATOM    125  CA  GLU   125      42.909 -16.854  40.489  1.00  0.00              
ATOM    126  CA  ALA   126      41.353 -20.265  40.047  1.00  0.00              
ATOM    127  CA  ILE   127      44.404 -22.095  41.375  1.00  0.00              
ATOM    128  CA  ASN   128      44.508 -19.781  44.405  1.00  0.00              
ATOM    129  CA  ASN   129      40.892 -20.440  45.170  1.00  0.00              
ATOM    130  CA  MET   130      41.267 -24.268  44.980  1.00  0.00              
ATOM    131  CA  LYS   131      44.561 -23.836  47.583  1.00  0.00              
ATOM    132  CA  ASN   132      41.567 -25.402  46.391  1.00  0.00              
TER                                                                             
END
