
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  123 (  123),  selected  123 , name T0307TS599_5-D1
# Molecule2: number of CA atoms  123 (  939),  selected  123 , name T0307_D1.pdb
# PARAMETERS: T0307TS599_5-D1.T0307_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    33        40 - 72          4.82    29.47
  LONGEST_CONTINUOUS_SEGMENT:    33        41 - 73          4.91    29.56
  LONGEST_CONTINUOUS_SEGMENT:    33        42 - 74          4.99    29.64
  LONGEST_CONTINUOUS_SEGMENT:    33        99 - 131         4.95    35.46
  LONGEST_CONTINUOUS_SEGMENT:    33       100 - 132         4.86    35.89
  LCS_AVERAGE:     25.06

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    22        44 - 65          1.96    35.20
  LCS_AVERAGE:     12.88

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    18        12 - 29          0.84    25.33
  LCS_AVERAGE:      9.66

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  123
LCS_GDT     I      10     I      10      6   20   25     5    5    7   13   18   20   20   20   20   20   20   21   21   22   22   23   23   25   26   26 
LCS_GDT     M      11     M      11     11   20   25     5    5   12   16   19   20   20   20   20   20   20   21   21   22   22   23   23   32   36   38 
LCS_GDT     T      12     T      12     18   20   25     5    7   17   18   19   20   20   20   20   20   20   21   21   22   22   23   25   26   26   38 
LCS_GDT     F      13     F      13     18   20   25     5    7   12   18   19   20   20   20   20   20   20   21   21   22   22   23   25   27   30   31 
LCS_GDT     S      14     S      14     18   20   25     8   16   17   18   19   20   20   20   20   20   20   21   21   22   25   26   27   30   31   34 
LCS_GDT     G      15     G      15     18   20   25    13   16   17   18   19   20   20   20   20   20   20   21   23   24   25   26   28   31   33   34 
LCS_GDT     Q      16     Q      16     18   20   25     7   16   17   18   19   20   20   20   20   20   20   21   23   24   25   26   28   31   33   34 
LCS_GDT     E      17     E      17     18   20   25    13   16   17   18   19   20   20   20   20   20   20   21   23   24   25   26   28   31   33   34 
LCS_GDT     L      18     L      18     18   20   25    13   16   17   18   19   20   20   20   20   20   20   21   23   24   25   26   28   31   36   38 
LCS_GDT     T      19     T      19     18   20   25    13   16   17   18   19   20   20   20   20   20   20   21   23   24   25   26   28   31   33   34 
LCS_GDT     A      20     A      20     18   20   25    13   16   17   18   19   20   20   20   20   20   20   21   23   24   25   26   28   31   36   38 
LCS_GDT     I      21     I      21     18   20   25    13   16   17   18   19   20   20   20   20   20   20   22   25   26   30   33   34   35   38   40 
LCS_GDT     I      22     I      22     18   20   25    13   16   17   18   19   20   20   20   20   20   21   23   24   28   30   32   35   39   41   45 
LCS_GDT     K      23     K      23     18   20   25    13   16   17   18   19   20   20   20   20   20   20   23   24   25   30   32   35   39   44   46 
LCS_GDT     M      24     M      24     18   20   25    13   16   17   18   19   20   20   20   20   20   23   25   27   29   31   38   40   42   44   46 
LCS_GDT     A      25     A      25     18   20   25    13   16   17   18   19   20   20   20   20   21   23   25   28   32   35   38   40   42   44   46 
LCS_GDT     K      26     K      26     18   20   25    13   16   17   18   19   20   20   20   20   21   23   26   29   32   35   38   40   42   44   46 
LCS_GDT     S      27     S      27     18   20   25    13   16   17   18   19   20   20   20   20   21   23   26   29   32   35   38   40   42   44   46 
LCS_GDT     M      28     M      28     18   20   25    13   16   17   18   19   20   20   20   20   20   21   25   28   32   35   38   40   42   44   46 
LCS_GDT     V      29     V      29     18   20   25    13   16   17   18   19   20   20   20   20   20   20   21   26   31   35   38   40   42   44   46 
LCS_GDT     M      30     M      30      5   19   25     4    5    5    7   10   12   15   17   19   19   20   21   26   29   33   35   37   38   41   45 
LCS_GDT     A      31     A      31      5    7   25     4    5    5    7    8    8   10   12   14   17   20   21   25   29   33   35   37   38   40   42 
LCS_GDT     D      32     D      32      5    7   31     4    5    5    7    8    8   10   12   14   18   22   25   28   30   33   35   37   38   40   42 
LCS_GDT     G      33     G      33      5    7   31     4    5    5    7    8   10   14   16   19   21   23   25   28   30   33   35   37   38   40   42 
LCS_GDT     K      34     K      34      6    7   31     4    6    6    7    8   10   14   16   19   21   23   25   28   30   32   34   37   38   39   39 
LCS_GDT     I      35     I      35      6    7   31     3    6    6    7    8   11   14   16   19   21   23   25   28   30   33   35   37   38   40   42 
LCS_GDT     K      36     K      36      6    7   31     4    6    6    6    6    9   12   13   19   21   23   25   28   30   33   35   37   41   44   46 
LCS_GDT     P      37     P      37      6    7   31     4    6    6    6    6    8   10   12   17   18   19   22   28   30   34   38   40   42   44   46 
LCS_GDT     A      38     A      38      6    7   31     4    6    6    6    6    9   12   13   17   20   23   25   28   30   33   35   37   41   44   46 
LCS_GDT     E      39     E      39      6    7   32     4    6    6    6    7   10   14   16   19   21   23   25   28   30   33   35   37   39   43   45 
LCS_GDT     I      40     I      40      3    7   33     3    3    3    6    9   12   14   16   19   21   23   26   28   30   33   35   37   39   43   45 
LCS_GDT     A      41     A      41      3    3   33     2    3    4    6    9   12   14   16   19   21   23   25   28   30   33   35   37   38   40   43 
LCS_GDT     V      42     V      42      3    3   33     0    3    4    4    4    7   14   16   19   21   23   25   28   30   33   35   37   38   40   42 
LCS_GDT     M      43     M      43      9   20   33     5    6    9   13   17   21   24   26   26   26   27   28   28   29   30   33   37   38   40   42 
LCS_GDT     T      44     T      44      9   22   33     5    6    9   15   20   22   24   26   26   26   27   28   28   29   32   35   37   38   40   42 
LCS_GDT     R      45     R      45      9   22   33     5    6    9   15   20   22   24   26   26   26   27   28   28   29   32   35   37   38   40   42 
LCS_GDT     E      46     E      46      9   22   33     5    6    9   15   20   22   24   26   26   26   27   28   28   30   33   35   37   38   40   42 
LCS_GDT     F      47     F      47      9   22   33     5    6    9   15   20   22   24   26   26   26   27   28   28   30   33   35   37   38   40   42 
LCS_GDT     M      48     M      48      9   22   33     3    6    9   15   20   22   24   26   26   26   27   28   28   30   33   35   37   38   40   42 
LCS_GDT     R      49     R      49      9   22   33     3    6    9   15   20   22   24   26   26   26   27   28   28   30   33   35   37   38   40   42 
LCS_GDT     F      50     F      50      9   22   33     3    6    9   15   20   22   24   26   26   26   27   28   28   30   33   35   37   38   40   42 
LCS_GDT     G      51     G      51      9   22   33     3    6    9   15   20   22   24   26   26   26   27   28   28   30   33   35   37   38   40   42 
LCS_GDT     I      52     I      52     10   22   33     4    7   12   15   20   22   24   26   26   26   27   28   28   30   33   35   37   38   40   42 
LCS_GDT     L      53     L      53     14   22   33     4   10   14   15   20   22   24   26   26   26   27   28   28   30   33   35   37   38   40   42 
LCS_GDT     Q      54     Q      54     14   22   33     4    9   14   15   20   22   24   26   26   26   27   28   28   30   33   35   37   38   40   42 
LCS_GDT     D      55     D      55     14   22   33     4    9   14   15   20   22   24   26   26   26   27   28   28   30   33   35   37   38   40   42 
LCS_GDT     Q      56     Q      56     14   22   33     7   12   14   15   20   22   24   26   26   26   27   28   28   30   33   35   37   38   40   43 
LCS_GDT     V      57     V      57     14   22   33     7   12   14   15   20   22   24   26   26   26   27   28   28   30   33   35   37   38   40   43 
LCS_GDT     D      58     D      58     14   22   33     7   12   14   15   20   22   24   26   26   26   27   28   28   30   33   35   37   39   41   44 
LCS_GDT     L      59     L      59     14   22   33     7   12   14   15   20   22   24   26   26   26   27   28   28   30   33   35   37   39   44   46 
LCS_GDT     L      60     L      60     14   22   33     7   12   14   15   20   22   24   26   26   26   27   28   28   30   33   35   37   39   44   46 
LCS_GDT     L      61     L      61     14   22   33     7   12   14   15   20   22   24   26   26   26   27   28   28   30   33   35   37   39   44   46 
LCS_GDT     K      62     K      62     14   22   33     7   12   14   15   20   22   24   26   26   26   27   28   28   30   33   38   40   41   44   46 
LCS_GDT     A      63     A      63     14   22   33     6   12   14   15   18   22   24   26   26   26   27   28   28   32   35   38   40   42   44   46 
LCS_GDT     S      64     S      64     14   22   33     6   12   14   15   19   22   24   26   26   26   27   28   29   32   35   38   40   42   44   46 
LCS_GDT     D      65     D      65     14   22   33     6   12   14   15   20   22   24   26   26   26   27   28   29   32   35   38   40   42   44   46 
LCS_GDT     S      66     S      66     14   18   33     5   12   14   15   16   21   24   26   26   26   27   28   29   32   35   38   40   42   44   46 
LCS_GDT     I      67     I      67     14   18   33     5   12   13   15   16   20   24   26   26   26   27   28   29   32   35   38   40   42   44   46 
LCS_GDT     E      68     E      68     14   18   33     6    9   12   15   16   21   24   26   26   26   27   28   29   32   35   38   40   42   44   46 
LCS_GDT     A      69     A      69     12   17   33     6   10   12   12   13   16   18   22   23   25   27   28   29   32   35   38   40   42   44   46 
LCS_GDT     S      70     S      70     12   14   33     6   10   12   12   13   16   16   19   20   22   25   26   29   32   35   38   40   42   44   46 
LCS_GDT     Q      71     Q      71     12   14   33     6   10   12   12   13   16   18   21   23   24   26   28   29   32   35   38   40   42   44   46 
LCS_GDT     A      72     A      72     12   14   33     6   10   12   12   13   16   16   19   20   22   23   26   29   32   35   38   40   42   44   46 
LCS_GDT     V      73     V      73     12   14   33     6   10   12   12   13   16   16   19   20   22   23   26   29   32   35   38   40   42   44   46 
LCS_GDT     A      74     A      74     12   14   33     6   10   12   12   13   16   16   19   20   22   23   26   29   32   35   38   40   42   44   46 
LCS_GDT     L      75     L      75     12   14   25     6   10   12   12   13   16   16   19   20   22   23   26   29   32   35   38   40   42   44   46 
LCS_GDT     I      76     I      76     12   14   30     6   10   12   12   13   16   16   19   20   22   23   26   29   32   35   38   40   42   44   46 
LCS_GDT     A      77     A      77     12   14   30     6   10   12   12   13   16   16   19   20   22   23   26   31   34   36   38   40   42   44   46 
LCS_GDT     R      78     R      78     12   14   30     6   10   12   12   13   16   16   19   20   24   27   32   33   34   36   38   40   42   44   46 
LCS_GDT     M      79     M      79     12   16   30     5    9   12   12   13   16   16   19   21   24   28   32   33   34   36   38   40   42   45   47 
LCS_GDT     D      80     D      80     15   16   30    11   14   15   15   15   15   16   18   21   24   28   32   33   34   36   37   39   42   45   47 
LCS_GDT     E      81     E      81     15   16   30    12   14   15   15   15   16   16   19   21   24   28   32   33   34   36   38   40   42   45   47 
LCS_GDT     E      82     E      82     15   16   30    12   14   15   15   15   15   16   18   21   24   28   32   33   34   36   38   40   42   45   47 
LCS_GDT     R      83     R      83     15   16   30    12   14   15   15   15   16   16   19   21   24   28   32   33   34   36   38   40   42   45   47 
LCS_GDT     K      84     K      84     15   16   30    12   14   15   15   15   15   16   18   21   24   28   32   33   34   36   38   40   42   45   47 
LCS_GDT     K      85     K      85     15   16   30    12   14   15   15   15   15   16   18   21   24   28   32   33   34   36   38   40   42   45   47 
LCS_GDT     Y      86     Y      86     15   16   30    12   14   15   15   15   15   16   18   21   24   28   32   33   34   36   37   40   42   45   47 
LCS_GDT     V      87     V      87     15   16   30    12   14   15   15   15   15   16   18   21   24   28   32   33   34   36   37   38   41   45   47 
LCS_GDT     A      88     A      88     15   16   30    12   14   15   15   15   15   16   18   20   24   28   32   33   34   36   37   38   40   45   47 
LCS_GDT     S      89     S      89     15   16   30    12   14   15   15   15   15   16   18   21   24   28   32   33   34   36   37   38   41   45   47 
LCS_GDT     Y      90     Y      90     15   16   30    12   14   15   15   15   15   16   18   21   24   28   32   33   34   36   37   38   41   45   47 
LCS_GDT     L      91     L      91     15   16   30    12   14   15   15   15   15   16   17   20   24   28   32   33   34   36   37   38   39   41   46 
LCS_GDT     G      92     G      92     15   16   30    12   14   15   15   15   15   16   16   20   23   28   32   33   34   36   37   38   40   43   46 
LCS_GDT     V      93     V      93     15   16   30    11   14   15   15   15   15   16   18   21   24   25   28   32   34   36   37   38   41   45   47 
LCS_GDT     I      94     I      94     15   16   30     8   14   15   15   15   15   16   16   19   23   26   32   33   34   36   37   38   40   43   47 
LCS_GDT     M      95     M      95      4   16   30     3    3    6    7   12   14   17   20   22   25   28   32   33   34   36   37   38   41   45   47 
LCS_GDT     A      96     A      96      4   10   30     3    4    5    7   10   12   15   21   22   25   28   32   33   34   36   37   38   41   45   47 
LCS_GDT     S      97     S      97      4   10   30     3    4    5    7    9   10   13   18   20   24   28   32   33   34   36   37   38   41   45   47 
LCS_GDT     D      98     D      98      4   10   30     3    4    6    7   10   11   14   18   20   24   28   32   33   34   36   37   38   41   45   47 
LCS_GDT     G      99     G      99      4   10   33     3    4    6    7   10   11   13   18   20   24   28   32   33   34   36   37   38   41   45   47 
LCS_GDT     D     100     D     100      6   10   33     6    6    6    7   10   10   13   15   18   24   28   32   33   34   36   37   38   41   45   47 
LCS_GDT     I     101     I     101      6   10   33     6    6    6    7   10   12   15   18   22   25   28   32   33   34   36   37   38   41   45   47 
LCS_GDT     D     102     D     102      6   10   33     6    6    6    7   10   12   14   21   22   25   28   32   33   34   36   37   38   41   45   47 
LCS_GDT     D     103     D     103      6   10   33     6    6    6    7   10   10   13   18   22   24   28   32   33   34   36   37   38   41   45   47 
LCS_GDT     N     104     N     104      6   10   33     6    6    6    7   10   10   11   15   18   24   28   32   33   34   36   37   38   38   42   46 
LCS_GDT     E     105     E     105      6    8   33     6    6    6    7   10   12   17   20   22   25   28   32   33   34   36   37   38   41   45   47 
LCS_GDT     L     106     L     106      3   16   33     0    3    5    6   11   14   17   21   22   25   27   29   31   34   36   37   38   41   45   47 
LCS_GDT     A     107     A     107     15   16   33    12   14   15   15   15   17   17   18   22   23   26   29   31   32   33   36   38   41   45   47 
LCS_GDT     L     108     L     108     15   16   33    12   14   15   15   15   17   17   18   22   24   26   28   31   32   33   36   38   41   45   47 
LCS_GDT     W     109     W     109     15   16   33    12   14   15   15   15   17   17   18   22   24   27   29   31   32   33   36   38   41   45   47 
LCS_GDT     T     110     T     110     15   16   33    12   14   15   15   15   17   17   21   22   25   27   29   31   32   33   36   38   41   45   47 
LCS_GDT     L     111     L     111     15   16   33    12   14   15   15   15   17   17   21   22   25   27   29   31   32   33   36   38   41   45   47 
LCS_GDT     I     112     I     112     15   16   33    12   14   15   15   15   17   17   21   22   25   27   29   31   32   33   36   38   41   45   47 
LCS_GDT     S     113     S     113     15   16   33    12   14   15   15   15   17   17   21   22   25   27   29   31   32   33   36   38   41   45   47 
LCS_GDT     T     114     T     114     15   16   33    12   14   15   15   15   17   17   21   22   25   27   29   31   32   33   36   38   41   45   47 
LCS_GDT     L     115     L     115     15   16   33    12   14   15   15   15   17   17   21   22   25   27   29   31   32   33   36   38   41   45   47 
LCS_GDT     C     116     C     116     15   16   33    12   14   15   15   15   17   17   21   22   25   27   29   31   32   33   36   38   41   45   47 
LCS_GDT     G     117     G     117     15   16   33    12   14   15   15   15   17   17   21   22   25   27   29   31   32   33   36   38   41   45   47 
LCS_GDT     L     118     L     118     15   16   33    12   14   15   15   15   17   17   21   22   25   27   29   31   32   33   36   38   41   45   47 
LCS_GDT     P     119     P     119     15   16   33    11   14   15   15   15   17   17   21   22   25   27   29   31   32   33   38   40   42   45   47 
LCS_GDT     T     120     T     120     15   16   33     4   13   15   15   15   17   17   21   22   25   27   29   31   32   35   38   40   42   45   47 
LCS_GDT     M     121     M     121     15   16   33     4   14   15   15   15   17   17   21   22   25   27   29   31   32   35   38   40   42   45   47 
LCS_GDT     T     122     T     122     10   16   33    10   10   10   10   10   10   12   16   19   22   23   26   31   32   35   38   40   42   44   46 
LCS_GDT     V     123     V     123     10   11   33    10   10   10   10   10   10   13   17   19   22   23   26   31   32   35   38   40   42   44   46 
LCS_GDT     M     124     M     124     10   11   33    10   10   10   10   10   10   11   13   16   20   24   27   31   32   35   37   40   42   44   46 
LCS_GDT     E     125     E     125     10   11   33    10   10   10   11   14   17   17   21   22   25   27   29   31   32   35   38   40   42   44   47 
LCS_GDT     A     126     A     126     10   11   33    10   10   10   13   15   17   17   21   22   25   27   29   31   32   35   38   40   42   45   47 
LCS_GDT     I     127     I     127     10   11   33    10   10   10   10   10   12   16   21   22   25   28   32   33   34   36   37   40   42   45   47 
LCS_GDT     N     128     N     128     10   11   33    10   10   10   10   10   12   16   21   22   25   28   32   33   34   36   37   40   42   45   47 
LCS_GDT     N     129     N     129     10   11   33    10   10   10   10   10   13   17   21   22   25   28   32   33   34   36   38   40   42   45   47 
LCS_GDT     M     130     M     130     10   11   33    10   10   10   10   10   14   17   21   22   25   28   32   33   34   36   37   38   41   45   47 
LCS_GDT     K     131     K     131     10   11   33    10   10   10   10   10   11   14   17   21   25   28   32   33   34   36   37   38   41   45   47 
LCS_GDT     N     132     N     132      0   11   33     0    1    1    3    4   10   14   17   18   21   27   32   33   34   36   37   40   42   43   47 
LCS_AVERAGE  LCS_A:  15.87  (   9.66   12.88   25.06 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     13     16     17     18     20     22     24     26     26     26     28     32     33     34     36     38     40     42     45     47 
GDT PERCENT_CA  10.57  13.01  13.82  14.63  16.26  17.89  19.51  21.14  21.14  21.14  22.76  26.02  26.83  27.64  29.27  30.89  32.52  34.15  36.59  38.21
GDT RMS_LOCAL    0.24   0.45   0.67   0.84   1.78   1.96   2.16   2.42   2.42   2.42   3.94   4.28   4.42   4.53   4.81   5.76   5.77   6.04   6.75   6.97
GDT RMS_ALL_CA  25.60  25.56  25.37  25.33  36.03  35.20  34.83  33.71  33.71  33.71  27.76  28.12  27.81  27.93  27.38  18.94  19.35  19.19  27.95  28.21

#      Molecule1      Molecule2       DISTANCE
LGA    I      10      I      10         14.474
LGA    M      11      M      11         13.985
LGA    T      12      T      12         16.178
LGA    F      13      F      13         16.968
LGA    S      14      S      14         21.665
LGA    G      15      G      15         23.405
LGA    Q      16      Q      16         22.147
LGA    E      17      E      17         17.487
LGA    L      18      L      18         14.729
LGA    T      19      T      19         16.530
LGA    A      20      A      20         14.435
LGA    I      21      I      21         11.655
LGA    I      22      I      22         12.695
LGA    K      23      K      23         12.153
LGA    M      24      M      24         11.469
LGA    A      25      A      25         13.500
LGA    K      26      K      26         14.499
LGA    S      27      S      27         12.851
LGA    M      28      M      28         16.768
LGA    V      29      V      29         20.261
LGA    M      30      M      30         19.411
LGA    A      31      A      31         21.869
LGA    D      32      D      32         27.151
LGA    G      33      G      33         25.110
LGA    K      34      K      34         26.134
LGA    I      35      I      35         23.035
LGA    K      36      K      36         24.060
LGA    P      37      P      37         23.404
LGA    A      38      A      38         21.599
LGA    E      39      E      39         16.964
LGA    I      40      I      40         12.809
LGA    A      41      A      41         11.736
LGA    V      42      V      42          9.542
LGA    M      43      M      43          3.374
LGA    T      44      T      44          2.594
LGA    R      45      R      45          1.501
LGA    E      46      E      46          1.574
LGA    F      47      F      47          2.426
LGA    M      48      M      48          2.748
LGA    R      49      R      49          3.980
LGA    F      50      F      50          3.980
LGA    G      51      G      51          3.214
LGA    I      52      I      52          0.993
LGA    L      53      L      53          1.783
LGA    Q      54      Q      54          1.809
LGA    D      55      D      55          1.806
LGA    Q      56      Q      56          1.465
LGA    V      57      V      57          2.681
LGA    D      58      D      58          2.890
LGA    L      59      L      59          1.255
LGA    L      60      L      60          1.125
LGA    L      61      L      61          2.321
LGA    K      62      K      62          2.071
LGA    A      63      A      63          1.529
LGA    S      64      S      64          1.924
LGA    D      65      D      65          1.768
LGA    S      66      S      66          2.750
LGA    I      67      I      67          3.945
LGA    E      68      E      68          3.170
LGA    A      69      A      69          8.336
LGA    S      70      S      70         12.752
LGA    Q      71      Q      71         10.064
LGA    A      72      A      72         12.361
LGA    V      73      V      73         17.302
LGA    A      74      A      74         18.541
LGA    L      75      L      75         17.906
LGA    I      76      I      76         22.014
LGA    A      77      A      77         25.423
LGA    R      78      R      78         25.869
LGA    M      79      M      79         27.599
LGA    D      80      D      80         33.972
LGA    E      81      E      81         38.348
LGA    E      82      E      82         39.720
LGA    R      83      R      83         37.561
LGA    K      84      K      84         38.712
LGA    K      85      K      85         43.715
LGA    Y      86      Y      86         43.947
LGA    V      87      V      87         42.125
LGA    A      88      A      88         45.415
LGA    S      89      S      89         50.260
LGA    Y      90      Y      90         49.229
LGA    L      91      L      91         48.404
LGA    G      92      G      92         53.730
LGA    V      93      V      93         57.315
LGA    I      94      I      94         55.386
LGA    M      95      M      95         54.331
LGA    A      96      A      96         57.470
LGA    S      97      S      97         61.299
LGA    D      98      D      98         67.801
LGA    G      99      G      99         66.797
LGA    D     100      D     100         66.338
LGA    I     101      I     101         61.236
LGA    D     102      D     102         62.123
LGA    D     103      D     103         59.101
LGA    N     104      N     104         54.254
LGA    E     105      E     105         52.862
LGA    L     106      L     106         50.366
LGA    A     107      A     107         43.812
LGA    L     108      L     108         41.584
LGA    W     109      W     109         39.348
LGA    T     110      T     110         37.613
LGA    L     111      L     111         35.331
LGA    I     112      I     112         33.831
LGA    S     113      S     113         32.301
LGA    T     114      T     114         31.034
LGA    L     115      L     115         29.625
LGA    C     116      C     116         29.244
LGA    G     117      G     117         28.385
LGA    L     118      L     118         30.163
LGA    P     119      P     119         33.035
LGA    T     120      T     120         37.376
LGA    M     121      M     121         40.216
LGA    T     122      T     122         40.174
LGA    V     123      V     123         43.880
LGA    M     124      M     124         50.075
LGA    E     125      E     125         46.412
LGA    A     126      A     126         44.026
LGA    I     127      I     127         51.219
LGA    N     128      N     128         53.454
LGA    N     129      N     129         48.317
LGA    M     130      M     130         50.802
LGA    K     131      K     131         57.998
LGA    N     132      N     132         55.292

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  123  123    4.0     26    2.42    19.919    18.078     1.033

LGA_LOCAL      RMSD =  2.416  Number of atoms =   26  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 33.113  Number of atoms =  123 
Std_ALL_ATOMS  RMSD = 16.952  (standard rmsd on all 123 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.560774 * X  +  -0.119338 * Y  +   0.819323 * Z  +  34.199921
  Y_new =  -0.674292 * X  +  -0.508430 * Y  +  -0.535565 * Z  +  -1.614867
  Z_new =   0.480481 * X  +  -0.852794 * Y  +   0.204646 * Z  +  38.095856 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -1.335279    1.806314  [ DEG:   -76.5058    103.4942 ]
  Theta =  -0.501203   -2.640389  [ DEG:   -28.7168   -151.2832 ]
  Phi   =  -2.264540    0.877053  [ DEG:  -129.7486     50.2514 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0307TS599_5-D1                               
REMARK     2: T0307_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0307TS599_5-D1.T0307_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  123  123   4.0   26   2.42  18.078    16.95
REMARK  ---------------------------------------------------------- 
MOLECULE T0307TS599_5-D1
PFRMAT TS                                                                       
TARGET T0307                                                                    
MODEL  5                                                                        
PARENT N/A                                                                      
ATOM     10  CA  ILE    10      18.585  13.557  32.060  1.00  0.00              
ATOM     11  CA  MET    11      20.258  10.655  30.431  1.00  0.00              
ATOM     12  CA  THR    12      20.321  10.945  26.580  1.00  0.00              
ATOM     13  CA  PHE    13      21.197   7.790  24.638  1.00  0.00              
ATOM     14  CA  SER    14      21.558   8.537  20.899  1.00  0.00              
ATOM     15  CA  GLY    15      22.732   5.389  19.193  1.00  0.00              
ATOM     16  CA  GLN    16      26.314   6.458  18.560  1.00  0.00              
ATOM     17  CA  GLU    17      26.907   8.162  21.883  1.00  0.00              
ATOM     18  CA  LEU    18      25.722   5.542  24.341  1.00  0.00              
ATOM     19  CA  THR    19      27.600   2.853  22.437  1.00  0.00              
ATOM     20  CA  ALA    20      30.796   4.933  22.633  1.00  0.00              
ATOM     21  CA  ILE    21      30.362   5.386  26.373  1.00  0.00              
ATOM     22  CA  ILE    22      29.842   1.667  26.880  1.00  0.00              
ATOM     23  CA  LYS    23      32.990   0.912  24.871  1.00  0.00              
ATOM     24  CA  MET    24      34.900   3.373  27.076  1.00  0.00              
ATOM     25  CA  ALA    25      33.623   1.784  30.294  1.00  0.00              
ATOM     26  CA  LYS    26      34.575  -1.679  29.099  1.00  0.00              
ATOM     27  CA  SER    27      38.166  -0.767  28.053  1.00  0.00              
ATOM     28  CA  MET    28      38.673   0.852  31.515  1.00  0.00              
ATOM     29  CA  VAL    29      37.340  -1.999  33.702  1.00  0.00              
ATOM     30  CA  MET    30      35.351  -1.253  36.809  1.00  0.00              
ATOM     31  CA  ALA    31      35.689  -3.663  39.820  1.00  0.00              
ATOM     32  CA  ASP    32      34.402  -1.486  42.683  1.00  0.00              
ATOM     33  CA  GLY    33      31.211  -0.661  40.704  1.00  0.00              
ATOM     34  CA  LYS    34      32.177   2.776  39.545  1.00  0.00              
ATOM     35  CA  ILE    35      31.361   2.481  35.807  1.00  0.00              
ATOM     36  CA  LYS    36      28.071   1.032  34.741  1.00  0.00              
ATOM     37  CA  PRO    37      27.205  -0.249  31.329  1.00  0.00              
ATOM     38  CA  ALA    38      24.122   2.083  31.121  1.00  0.00              
ATOM     39  CA  GLU    39      25.891   5.351  31.589  1.00  0.00              
ATOM     40  CA  ILE    40      23.703   7.878  29.889  1.00  0.00              
ATOM     41  CA  ALA    41      24.436  10.746  27.414  1.00  0.00              
ATOM     42  CA  VAL    42      22.708  14.152  27.929  1.00  0.00              
ATOM     43  CA  MET    43      21.682  16.339  25.104  1.00  0.00              
ATOM     44  CA  THR    44      21.423  20.053  25.532  1.00  0.00              
ATOM     45  CA  ARG    45      18.175  20.680  23.593  1.00  0.00              
ATOM     46  CA  GLU    46      16.375  17.888  25.423  1.00  0.00              
ATOM     47  CA  PHE    47      17.680  19.115  28.766  1.00  0.00              
ATOM     48  CA  MET    48      16.712  22.739  28.082  1.00  0.00              
ATOM     49  CA  ARG    49      13.272  21.437  27.096  1.00  0.00              
ATOM     50  CA  PHE    50      12.762  19.713  30.423  1.00  0.00              
ATOM     51  CA  GLY    51      13.768  22.915  32.226  1.00  0.00              
ATOM     52  CA  ILE    52      16.793  21.858  34.242  1.00  0.00              
ATOM     53  CA  LEU    53      18.786  25.004  33.539  1.00  0.00              
ATOM     54  CA  GLN    54      19.958  24.624  29.990  1.00  0.00              
ATOM     55  CA  ASP    55      23.484  25.908  30.745  1.00  0.00              
ATOM     56  CA  GLN    56      23.396  23.880  34.015  1.00  0.00              
ATOM     57  CA  VAL    57      22.696  20.655  32.078  1.00  0.00              
ATOM     58  CA  ASP    58      25.140  20.716  29.157  1.00  0.00              
ATOM     59  CA  LEU    59      27.813  21.583  31.728  1.00  0.00              
ATOM     60  CA  LEU    60      26.922  18.747  34.101  1.00  0.00              
ATOM     61  CA  LEU    61      26.954  16.207  31.258  1.00  0.00              
ATOM     62  CA  LYS    62      30.346  17.236  29.859  1.00  0.00              
ATOM     63  CA  ALA    63      31.861  17.213  33.367  1.00  0.00              
ATOM     64  CA  SER    64      30.513  13.764  34.223  1.00  0.00              
ATOM     65  CA  ASP    65      32.337  12.066  31.341  1.00  0.00              
ATOM     66  CA  SER    66      35.688  13.689  32.267  1.00  0.00              
ATOM     67  CA  ILE    67      35.577  12.755  35.952  1.00  0.00              
ATOM     68  CA  GLU    68      34.571   9.182  34.996  1.00  0.00              
ATOM     69  CA  ALA    69      37.623   8.522  32.876  1.00  0.00              
ATOM     70  CA  SER    70      40.169   9.652  35.435  1.00  0.00              
ATOM     71  CA  GLN    71      38.568   7.670  38.302  1.00  0.00              
ATOM     72  CA  ALA    72      38.373   4.480  36.335  1.00  0.00              
ATOM     73  CA  VAL    73      41.920   3.929  35.183  1.00  0.00              
ATOM     74  CA  ALA    74      43.041   4.592  38.821  1.00  0.00              
ATOM     75  CA  LEU    75      40.505   2.185  40.298  1.00  0.00              
ATOM     76  CA  ILE    76      41.394  -0.730  37.958  1.00  0.00              
ATOM     77  CA  ALA    77      45.015  -0.363  38.820  1.00  0.00              
ATOM     78  CA  ARG    78      44.320  -0.374  42.581  1.00  0.00              
ATOM     79  CA  MET    79      42.058  -3.444  42.509  1.00  0.00              
ATOM     80  CA  ASP    80      44.652  -5.378  40.500  1.00  0.00              
ATOM     81  CA  GLU    81      47.532  -4.457  42.868  1.00  0.00              
ATOM     82  CA  GLU    82      45.469  -5.514  45.909  1.00  0.00              
ATOM     83  CA  ARG    83      44.663  -8.834  44.206  1.00  0.00              
ATOM     84  CA  LYS    84      48.348  -9.397  43.387  1.00  0.00              
ATOM     85  CA  LYS    85      49.315  -8.782  47.023  1.00  0.00              
ATOM     86  CA  TYR    86      46.683 -11.215  48.359  1.00  0.00              
ATOM     87  CA  VAL    87      47.923 -13.824  45.861  1.00  0.00              
ATOM     88  CA  ALA    88      51.602 -13.498  46.709  1.00  0.00              
ATOM     89  CA  SER    89      50.798 -13.885  50.456  1.00  0.00              
ATOM     90  CA  TYR    90      48.580 -16.889  49.844  1.00  0.00              
ATOM     91  CA  LEU    91      51.162 -18.689  47.685  1.00  0.00              
ATOM     92  CA  GLY    92      53.833 -18.203  50.338  1.00  0.00              
ATOM     93  CA  VAL    93      51.487 -19.896  52.874  1.00  0.00              
ATOM     94  CA  ILE    94      50.038 -22.681  50.858  1.00  0.00              
ATOM     95  CA  MET    95      46.434 -23.648  51.755  1.00  0.00              
ATOM     96  CA  ALA    96      44.857 -26.836  50.560  1.00  0.00              
ATOM     97  CA  SER    97      41.788 -28.229  52.362  1.00  0.00              
ATOM     98  CA  ASP    98      43.146 -31.364  54.062  1.00  0.00              
ATOM     99  CA  GLY    99      46.130 -29.542  55.547  1.00  0.00              
ATOM    100  CA  ASP   100      48.898 -31.418  53.699  1.00  0.00              
ATOM    101  CA  ILE   101      50.625 -28.563  51.996  1.00  0.00              
ATOM    102  CA  ASP   102      54.265 -27.839  52.489  1.00  0.00              
ATOM    103  CA  ASP   103      55.046 -24.365  53.756  1.00  0.00              
ATOM    104  CA  ASN   104      55.966 -22.917  50.316  1.00  0.00              
ATOM    105  CA  GLU   105      53.254 -24.563  48.296  1.00  0.00              
ATOM    106  CA  LEU   106      49.754 -25.275  47.515  1.00  0.00              
ATOM    107  CA  ALA   107      46.699 -23.075  47.501  1.00  0.00              
ATOM    108  CA  LEU   108      43.316 -24.766  47.018  1.00  0.00              
ATOM    109  CA  TRP   109      41.069 -22.003  45.649  1.00  0.00              
ATOM    110  CA  THR   110      44.041 -20.851  43.494  1.00  0.00              
ATOM    111  CA  LEU   111      44.273 -24.223  41.837  1.00  0.00              
ATOM    112  CA  ILE   112      40.504 -24.353  41.210  1.00  0.00              
ATOM    113  CA  SER   113      40.408 -20.761  39.869  1.00  0.00              
ATOM    114  CA  THR   114      43.152 -21.520  37.401  1.00  0.00              
ATOM    115  CA  LEU   115      41.431 -24.642  36.130  1.00  0.00              
ATOM    116  CA  CYS   116      37.991 -22.953  35.987  1.00  0.00              
ATOM    117  CA  GLY   117      39.106 -19.644  34.613  1.00  0.00              
ATOM    118  CA  LEU   118      38.241 -17.694  37.815  1.00  0.00              
ATOM    119  CA  PRO   119      40.439 -14.751  38.571  1.00  0.00              
ATOM    120  CA  THR   120      43.118 -15.511  41.205  1.00  0.00              
ATOM    121  CA  MET   121      42.433 -12.528  43.415  1.00  0.00              
ATOM    122  CA  THR   122      38.677 -13.281  43.730  1.00  0.00              
ATOM    123  CA  VAL   123      39.429 -16.885  44.668  1.00  0.00              
ATOM    124  CA  MET   124      42.164 -15.980  47.206  1.00  0.00              
ATOM    125  CA  GLU   125      39.816 -13.506  48.942  1.00  0.00              
ATOM    126  CA  ALA   126      37.157 -16.192  49.077  1.00  0.00              
ATOM    127  CA  ILE   127      39.606 -18.711  50.591  1.00  0.00              
ATOM    128  CA  ASN   128      40.687 -16.191  53.243  1.00  0.00              
ATOM    129  CA  ASN   129      37.138 -15.411  54.151  1.00  0.00              
ATOM    130  CA  MET   130      36.189 -19.111  54.641  1.00  0.00              
ATOM    131  CA  LYS   131      39.611 -19.419  57.101  1.00  0.00              
ATOM    132  CA  ASN   132      36.183 -20.017  56.260  1.00  0.00              
TER                                                                             
END
