
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  146 (  146),  selected  140 , name T0312TS168_1
# Molecule2: number of CA atoms  140 ( 1114),  selected  140 , name T0312.pdb
# PARAMETERS: T0312TS168_1.T0312.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    39        38 - 76          4.81    18.49
  LONGEST_CONTINUOUS_SEGMENT:    39        39 - 77          4.95    18.80
  LCS_AVERAGE:     19.89

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    13        20 - 32          1.85    20.87
  LONGEST_CONTINUOUS_SEGMENT:    13        21 - 33          1.51    20.79
  LCS_AVERAGE:      6.72

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    12        21 - 32          0.26    21.56
  LCS_AVERAGE:      3.56

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  140
LCS_GDT     M       1     M       1      3    8   12     3    3    4    4    8   10   11   11   12   19   29   33   38   41   46   49   52   53   55   56 
LCS_GDT     K       2     K       2      3    8   12     3    3    4    5    7    8   10   11   11   15   18   21   35   41   46   49   52   53   55   56 
LCS_GDT     V       3     V       3      6    8   12     3    4    5    8    8    9   10   11   12   15   18   20   22   29   31   32   36   39   45   53 
LCS_GDT     F       4     F       4      6    8   12     3    4    5    8    8    9   10   11   12   15   18   20   22   24   26   30   31   38   40   46 
LCS_GDT     E       5     E       5      6    8   12     3    4    5    8    8    9   10   11   12   15   18   19   22   23   24   30   30   33   36   40 
LCS_GDT     F       6     F       6      6    8   29     3    4    5    8    8    9   10   11   12   15   18   19   22   23   26   30   31   34   37   42 
LCS_GDT     E       7     E       7      6    8   30     3    3    5    8    8    9   10   16   18   19   20   22   23   25   29   31   31   36   42   52 
LCS_GDT     V       8     V       8      6    8   30     5    9   14   14   15   16   17   20   23   24   26   27   28   29   30   35   39   45   49   53 
LCS_GDT     G       9     G       9      5    9   30     5    9   14   14   15   16   18   21   23   24   26   27   28   29   30   35   39   43   47   53 
LCS_GDT     K      10     K      10      5    9   30     4    5    6    8   11   16   18   21   23   24   26   27   28   29   30   35   39   43   47   52 
LCS_GDT     G      11     G      11      5    9   30     4    5    6    8   15   16   18   21   23   24   26   27   28   29   30   35   39   43   47   52 
LCS_GDT     F      12     F      12      5    9   30     4    5    6    8   11   13   18   21   23   24   26   27   28   29   30   35   39   43   49   53 
LCS_GDT     L      13     L      13      5    9   30     4    5    6    8   11   13   18   21   23   24   26   27   28   29   30   34   38   47   50   53 
LCS_GDT     L      14     L      14      4    9   30     3    4    5    6    9   13   18   21   23   24   26   27   28   29   30   34   38   42   45   50 
LCS_GDT     R      15     R      15      4    9   30     3    4    5    6    9   13   18   21   23   24   26   27   28   29   30   34   38   42   44   49 
LCS_GDT     L      16     L      16      4    9   30     3    4    5    6    9   13   18   21   23   24   26   27   28   29   30   35   38   43   46   50 
LCS_GDT     D      17     D      17      4    9   30     2    4    5    6    9   13   18   21   23   24   26   27   28   29   31   35   37   43   46   53 
LCS_GDT     Y      18     Y      18      3    7   30     3    3    5    7   11   13   18   21   23   24   26   27   28   29   31   35   37   43   49   53 
LCS_GDT     G      19     G      19      3    7   30     3    3    4    7   11   13   18   21   23   24   26   27   28   29   30   40   42   44   49   53 
LCS_GDT     K      20     K      20      3   13   30     3    3    5    7    9   13   18   21   23   24   26   27   33   35   38   40   42   44   49   53 
LCS_GDT     D      21     D      21     12   13   30    11   12   14   14   15   16   18   21   23   24   26   30   33   35   38   40   42   45   49   52 
LCS_GDT     L      22     L      22     12   13   30    11   12   14   14   15   16   16   18   20   23   26   30   33   35   38   40   42   45   49   53 
LCS_GDT     V      23     V      23     12   13   30    11   12   14   14   15   16   18   21   23   24   26   30   33   35   38   40   42   45   49   53 
LCS_GDT     R      24     R      24     12   13   30    11   12   14   14   15   16   18   21   23   24   26   30   33   35   38   40   42   45   49   53 
LCS_GDT     Q      25     Q      25     12   13   30    11   12   14   14   15   16   18   21   23   24   28   30   33   35   38   40   42   45   49   53 
LCS_GDT     I      26     I      26     12   13   30    11   12   14   14   15   16   18   21   23   25   28   30   33   35   38   40   42   45   49   53 
LCS_GDT     E      27     E      27     12   13   30    11   12   14   14   15   16   18   21   23   25   28   30   33   35   38   40   42   45   49   53 
LCS_GDT     E      28     E      28     12   13   30    11   12   14   14   15   16   17   21   23   25   28   30   33   35   38   40   42   45   49   53 
LCS_GDT     F      29     F      29     12   13   30    11   12   14   14   15   16   17   21   23   25   28   30   33   35   38   40   42   45   49   53 
LCS_GDT     L      30     L      30     12   13   30    11   12   14   14   15   16   17   21   23   25   28   30   33   35   38   40   42   45   49   53 
LCS_GDT     E      31     E      31     12   13   30    11   12   14   14   15   16   17   20   23   25   28   30   33   35   38   40   42   45   49   53 
LCS_GDT     E      32     E      32     12   13   30    11   12   14   14   15   16   16   20   22   25   28   30   33   35   38   40   42   45   49   53 
LCS_GDT     K      33     K      33      4   13   30     3    4    5    8   10   13   15   16   19   21   25   26   28   30   38   40   42   45   50   53 
LCS_GDT     G      34     G      34      4    8   30     3    4    5    6    9   11   18   20   22   24   26   27   28   29   31   34   37   42   45   49 
LCS_GDT     I      35     I      35      4    8   30     1    4    5    6    7    9   15   16   18   20   21   25   27   28   31   38   45   47   51   54 
LCS_GDT     H      36     H      36      3    8   30     3    3    4    6    7    9   10   12   14   16   19   20   23   25   29   32   33   42   45   48 
LCS_GDT     A      37     A      37      3    8   25     3    3    5    6    7    9   13   15   16   19   20   21   23   25   27   31   40   50   53   54 
LCS_GDT     A      38     A      38      3    8   39     3    3    4    6    7    9   11   14   17   19   26   33   38   41   46   49   52   53   55   56 
LCS_GDT     H      39     H      39      3    8   39     2    3    5    6   10   13   17   21   27   31   34   38   41   43   46   49   52   53   55   56 
LCS_GDT     I      40     I      40      3    7   39     0    3    4   10   13   16   22   27   29   32   35   38   41   43   46   49   52   53   55   56 
LCS_GDT     S      41     S      41      3   11   39     3    3    6   10   15   19   24   27   29   32   35   38   41   43   44   48   52   53   55   56 
LCS_GDT     A      42     A      42      5   11   39     3    5    5    9   14   19   24   27   29   32   35   38   41   43   46   49   52   53   55   56 
LCS_GDT     I      43     I      43      5   12   39     3    5    9   10   15   19   24   27   29   32   35   38   41   43   46   49   52   53   55   56 
LCS_GDT     G      44     G      44      5   12   39     3    5    9   10   15   18   24   27   29   32   35   38   41   43   46   49   52   53   55   56 
LCS_GDT     A      45     A      45      5   12   39     3    5    9   10   15   19   24   27   29   32   35   38   41   43   46   49   52   53   55   56 
LCS_GDT     V      46     V      46      5   12   39     3    5    6   10   15   19   24   27   29   32   35   38   41   43   46   49   52   53   55   56 
LCS_GDT     R      47     R      47      5   12   39     3    5    9   11   13   19   24   27   29   32   35   38   41   43   46   49   52   53   55   56 
LCS_GDT     S      48     S      48      5   12   39     3    5    9   11   15   19   24   27   29   32   35   38   41   43   46   49   52   53   55   56 
LCS_GDT     A      49     A      49      5   12   39     3    5    9   11   15   19   24   27   29   32   35   38   41   43   46   49   52   53   55   56 
LCS_GDT     V      50     V      50      5   12   39     3    5    7   10   15   19   24   27   29   32   35   38   41   43   46   49   52   53   55   56 
LCS_GDT     I      51     I      51      5   12   39     3    5    7   10   15   19   24   27   29   32   35   38   41   43   46   49   52   53   55   56 
LCS_GDT     G      52     G      52      4   12   39     3    4    7    8   13   17   22   25   27   32   35   38   41   43   46   49   52   53   55   56 
LCS_GDT     Y      53     Y      53      4   12   39     3    5    7   10   14   19   24   26   29   32   35   38   41   43   46   49   52   53   55   56 
LCS_GDT     Y      54     Y      54      4   12   39     3    5    7    9   15   19   24   26   29   32   35   38   41   43   46   49   52   53   55   56 
LCS_GDT     D      55     D      55      4   12   39     3    5    7   10   14   19   24   26   29   32   35   38   41   43   46   49   52   53   55   56 
LCS_GDT     Q      56     Q      56      4   10   39     3    4    5   10   14   19   24   26   29   32   35   38   41   43   46   49   52   53   55   56 
LCS_GDT     E      57     E      57      4   10   39     3    4    6   10   13   17   23   25   28   32   35   38   40   43   46   49   52   53   55   56 
LCS_GDT     K      58     K      58      4   10   39     3    4    5   10   13   19   23   24   29   32   35   38   41   43   46   49   52   53   55   56 
LCS_GDT     K      59     K      59      3   11   39     3    4    6    8   12   16   24   26   29   32   35   38   41   43   46   49   52   53   55   56 
LCS_GDT     E      60     E      60      5   11   39     4    5    9   11   14   17   22   27   28   31   35   38   41   43   46   49   52   53   55   56 
LCS_GDT     Y      61     Y      61      5   11   39     4    5    9   11   14   17   23   27   28   31   35   38   41   43   46   49   52   53   55   56 
LCS_GDT     V      62     V      62      5   11   39     4    5    9   11   14   17   24   27   29   32   35   38   41   43   46   49   52   53   55   56 
LCS_GDT     K      63     K      63      5   11   39     4    5    9   11   14   18   24   27   29   32   35   38   41   43   46   49   52   53   55   56 
LCS_GDT     K      64     K      64      5   11   39     3    3    5   10   14   19   24   27   29   32   35   38   41   43   46   49   52   53   55   56 
LCS_GDT     E      65     E      65      4   11   39     3    5    9   11   15   18   24   27   29   32   35   38   41   43   46   49   52   53   55   56 
LCS_GDT     L      66     L      66      4   11   39     3    5    9   11   15   19   24   27   29   32   35   38   41   43   46   49   52   53   55   56 
LCS_GDT     M      67     M      67      4   11   39     3    4    9   11   15   19   24   27   29   32   35   38   41   43   46   49   52   53   55   56 
LCS_GDT     E      68     E      68      4   11   39     3    4    9   11   15   19   24   27   29   32   35   38   41   43   46   49   52   53   55   56 
LCS_GDT     P      69     P      69      3   11   39     3    4    6   11   15   19   24   27   29   32   35   38   41   43   46   49   52   53   55   56 
LCS_GDT     L      70     L      70      4    8   39     4    4    5    8   10   15   22   27   28   32   35   38   41   43   46   49   52   53   55   56 
LCS_GDT     E      71     E      71      4    8   39     4    4    5   10   13   17   23   27   29   32   35   38   41   43   46   49   52   53   55   56 
LCS_GDT     I      72     I      72      4    8   39     4    4    5   10   12   17   22   27   29   32   35   38   41   43   46   49   52   53   55   56 
LCS_GDT     L      73     L      73      4    7   39     4    4    5    6   10   16   23   27   29   32   35   38   41   43   46   49   52   53   55   56 
LCS_GDT     S      74     S      74      3    7   39     3    5    7    8    9   10   15   16   22   25   32   38   41   43   46   49   52   53   55   56 
LCS_GDT     L      75     L      75      3    7   39     3    3    5    7   10   13   15   18   21   25   28   32   38   41   46   49   52   53   55   56 
LCS_GDT     S      76     S      76      3    7   39     3    3    5    6    9   10   12   16   18   22   26   31   34   39   44   49   52   53   55   56 
LCS_GDT     G      77     G      77      4    7   39     3    4    5    6    9   10   14   17   20   25   28   31   34   37   41   43   45   48   49   53 
LCS_GDT     N      78     N      78      4    7   24     3    4    5    6    7   10   12   14   18   22   25   29   32   36   41   43   45   48   49   50 
LCS_GDT     V      79     V      79      4    7   24     2    4    5    6    7   10   12   13   15   19   25   27   30   32   37   40   43   48   49   50 
LCS_GDT     S      80     S      80      4    7   24     0    4    5    6    8   10   12   14   18   22   25   27   30   34   37   42   44   48   49   50 
LCS_GDT     M      81     M      81      4    7   24     4    4    4    6    8   10   12   14   18   22   25   27   31   34   37   42   44   48   49   50 
LCS_GDT     K      82     K      82      4    7   24     4    4    4    6    8   10   11   13   15   17   22   28   32   36   41   43   45   48   49   50 
LCS_GDT     D      83     D      83      4    7   24     4    4    5    8    8   10   11   13   15   19   23   28   32   36   41   43   45   48   49   50 
LCS_GDT     S      84     S      84      4    7   24     4    4    5    6    8    9   12   14   18   22   25   28   32   36   41   43   45   48   49   50 
LCS_GDT     K      85     K      85      5    8   24     3    5    5    7    9   10   12   14   18   22   25   27   31   35   41   43   45   48   49   50 
LCS_GDT     P      86     P      86      5    8   24     3    5    5    7    9   10   12   13   16   18   25   27   31   34   41   43   45   48   49   50 
LCS_GDT     F      87     F      87      5    8   24     3    5    5    7    9   10   12   14   18   25   28   31   34   37   41   43   45   48   49   50 
LCS_GDT     C      88     C      88      5    8   24     3    5    5    7    9   10   12   17   22   25   28   31   34   37   41   43   45   48   49   50 
LCS_GDT     H      89     H      89      5    8   24     3    5    6    7    9   14   16   18   22   25   28   31   34   37   38   43   45   47   49   53 
LCS_GDT     I      90     I      90      5    8   24     3    4    6    7    9   14   16   18   22   25   28   33   38   41   46   49   52   53   55   56 
LCS_GDT     H      91     H      91      4    8   24     3    4    6    6    9   14   16   20   22   30   33   38   41   43   46   49   52   53   55   56 
LCS_GDT     V      92     V      92      4   11   24     3    4    6    6   11   14   16   20   26   30   35   38   41   43   46   49   52   53   55   56 
LCS_GDT     L      93     L      93      4   11   24     3    4    6    7   11   14   16   20   23   26   31   34   37   38   41   43   45   48   49   53 
LCS_GDT     L      94     L      94      4   11   24     3    4    6    6    9   14   16   20   22   25   28   31   34   37   41   43   45   48   49   53 
LCS_GDT     G      95     G      95      6   11   24     3    4    5    7   11   14   16   18   22   25   28   31   34   37   41   43   45   48   49   53 
LCS_GDT     K      96     K      96      6   11   23     3    5    6    8   11   14   16   18   22   25   28   31   34   37   41   43   45   48   49   53 
LCS_GDT     D      97     D      97      6   11   23     4    5    6    8   11   14   16   18   22   25   28   31   34   37   41   43   45   48   49   53 
LCS_GDT     G      98     G      98      6   11   23     4    5    6    8   11   14   16   18   22   25   28   31   34   37   41   43   45   48   49   52 
LCS_GDT     E      99     E      99      6   11   23     4    5    6    8   11   14   16   18   22   25   28   31   34   37   41   43   45   48   49   52 
LCS_GDT     V     100     V     100      6   11   23     4    5    6    8   11   14   16   18   22   25   28   31   34   37   41   43   45   48   49   52 
LCS_GDT     Y     101     Y     101      6   11   23     3    5    6    8   11   14   16   18   22   26   28   31   34   37   41   43   45   48   49   53 
LCS_GDT     G     102     G     102      4   11   23     3    3    5    8   11   14   17   22   24   28   35   36   37   39   41   45   48   52   55   56 
LCS_GDT     G     103     G     103      4   11   23     0    4    6    8   11   15   19   25   29   32   35   38   41   43   46   49   52   53   55   56 
LCS_GDT     H     104     H     104      4   10   23     3    5    9   10   13   17   23   27   28   32   35   38   41   43   46   49   52   53   55   56 
LCS_GDT     L     105     L     105      4    7   23     3    3    5    7   10   13   16   18   22   25   28   31   34   37   44   49   52   53   55   56 
LCS_GDT     F     106     F     106      4    7   23     3    4    5    7   10   13   15   18   21   25   28   31   34   37   41   43   45   48   49   50 
LCS_GDT     S     107     S     107      3    7   23     3    3    4    7    8    9   12   15   17   19   23   28   31   37   40   43   45   48   49   50 
LCS_GDT     A     108     A     108      4    7   23     3    3    4    7    8   10   12   15   17   18   21   24   30   35   38   42   45   48   49   50 
LCS_GDT     E     109     E     109      4    7   23     3    3    4    6    8   10   12   15   17   18   19   26   30   36   40   43   45   48   49   50 
LCS_GDT     V     110     V     110      4    5   23     3    3    4    5    8   10   12   15   17   18   20   26   31   36   38   43   45   46   49   50 
LCS_GDT     F     111     F     111      4    6   20     3    3    4    5    8   10   12   15   17   18   20   21   26   31   36   41   43   45   47   49 
LCS_GDT     A     112     A     112      3    6   20     3    3    4    5    6    8   11   12   14   16   18   21   24   28   30   32   37   40   44   49 
LCS_GDT     C     113     C     113      3    8   20     3    3    5    6    8   10   12   15   17   19   22   25   27   29   30   33   35   40   42   49 
LCS_GDT     E     114     E     114      3    8   20     3    3    5    6    8   10   12   15   19   23   25   27   28   29   33   36   38   42   42   45 
LCS_GDT     V     115     V     115      5    8   20     3    4    5    6    7   10   12   15   17   18   18   22   25   28   33   36   38   42   45   47 
LCS_GDT     F     116     F     116      5    8   20     1    4    5    7    9   10   12   15   17   18   19   22   24   30   33   36   38   39   44   45 
LCS_GDT     V     117     V     117      5    8   20     2    4    5    6    8   10   12   15   17   18   19   21   23   29   31   32   36   39   44   45 
LCS_GDT     L     118     L     118      5    8   20     2    4    5    6    8   10   12   15   17   18   18   21   22   24   26   27   30   35   37   39 
LCS_GDT     P     119     P     119      5    8   20     3    4    5    6   10   12   14   16   17   18   18   21   22   24   24   25   28   28   35   37 
LCS_GDT     L     120     L     120      4    8   20     3    4    5    6   10   12   14   16   17   18   18   21   22   24   24   25   28   28   32   34 
LCS_GDT     S     121     S     121      4   10   20     3    4    6    8   10   12   14   16   17   18   18   20   22   23   23   25   28   28   32   34 
LCS_GDT     G     122     G     122      4   10   20     3    4    6    8   10   12   14   16   17   18   18   19   22   23   23   25   28   28   32   34 
LCS_GDT     E     123     E     123      3   10   20     0    2    6    8   10   12   14   16   16   17   17   18   19   20   23   25   28   28   32   34 
LCS_GDT     A     124     A     124      4   10   20     4    4    6    8   10   12   14   16   16   17   17   18   19   19   22   25   28   28   32   34 
LCS_GDT     P     125     P     125      5   10   19     4    4    6    7   10   12   14   16   16   17   17   18   19   19   21   24   26   28   32   34 
LCS_GDT     E     126     E     126      5   10   19     4    4    6    7   10   10   13   16   16   17   17   18   19   19   21   24   26   33   37   37 
LCS_GDT     R     127     R     127      5   10   19     4    4    6    8   10   12   14   16   16   17   18   27   27   40   42   46   47   51   54   56 
LCS_GDT     A     128     A     128      5   10   19     4    4    6    8   10   12   14   16   16   17   18   19   19   20   22   29   34   50   53   56 
LCS_GDT     F     129     F     129      5   10   19     4    4    6    8   10   12   14   16   16   17   17   25   35   41   44   49   52   53   55   56 
LCS_GDT     D     130     D     130      4   10   19     3    4    6    8   10   12   14   16   16   30   33   38   41   43   46   49   52   53   55   56 
LCS_GDT     E     131     E     131      4    7   19     3    4    4    6    7    8   13   16   26   29   33   35   41   43   46   49   52   53   55   56 
LCS_GDT     Q     132     Q     132      4    7   19     3    4    4    8   10   12   16   19   26   29   33   35   36   37   44   45   50   53   55   56 
LCS_GDT     T     133     T     133      4    7   19     3    4    4    6   12   15   20   25   26   29   33   35   40   43   46   49   52   53   55   56 
LCS_GDT     G     134     G     134      3    7   19     3    4    5    6   10   12   17   21   25   28   30   32   36   41   46   49   52   53   55   56 
LCS_GDT     L     135     L     135      5    7   19     3    4    5    6    7    7    9   10   14   17   18   30   34   37   37   41   48   52   55   55 
LCS_GDT     F     136     F     136      5    7   19     3    4    5    6    7    7    9   10   10   13   15   17   20   22   26   29   35   42   49   52 
LCS_GDT     L     137     L     137      5    7   10     3    3    5    6    7    7    9   10   11   13   15   17   20   22   25   29   32   38   42   47 
LCS_GDT     W     138     W     138      5    7   10     3    4    5    6    7    7    9   10   11   13   15   17   20   22   25   29   32   36   42   47 
LCS_GDT     L     139     L     139      5    7   10     3    4    5    6    7    7    9   10   11   13   15   15   19   22   25   29   31   38   42   47 
LCS_GDT     E     140     E     140      0    7   10     0    0    5    6    7    7    7    7    7   12   13   15   19   20   21   21   24   28   32   42 
LCS_AVERAGE  LCS_A:  10.06  (   3.56    6.72   19.89 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     11     12     14     14     15     19     24     27     29     32     35     38     41     43     46     49     52     53     55     56 
GDT PERCENT_CA   7.86   8.57  10.00  10.00  10.71  13.57  17.14  19.29  20.71  22.86  25.00  27.14  29.29  30.71  32.86  35.00  37.14  37.86  39.29  40.00
GDT RMS_LOCAL    0.18   0.26   0.85   0.85   1.08   2.23   2.58   2.77   3.03   3.29   3.57   3.89   4.24   4.39   5.18   5.45   5.61   5.70   5.89   5.98
GDT RMS_ALL_CA  21.73  21.56  22.51  22.51  22.81  20.73  20.74  18.76  20.62  20.40  20.91  19.71  19.23  19.32  18.15  17.88  18.00  18.12  18.10  18.19

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         11.324
LGA    K       2      K       2         12.183
LGA    V       3      V       3         15.634
LGA    F       4      F       4         19.653
LGA    E       5      E       5         22.453
LGA    F       6      F       6         25.373
LGA    E       7      E       7         29.825
LGA    V       8      V       8         31.585
LGA    G       9      G       9         33.427
LGA    K      10      K      10         30.033
LGA    G      11      G      11         23.491
LGA    F      12      F      12         18.902
LGA    L      13      L      13         14.679
LGA    L      14      L      14         17.716
LGA    R      15      R      15         17.088
LGA    L      16      L      16         17.497
LGA    D      17      D      17         21.624
LGA    Y      18      Y      18         26.175
LGA    G      19      G      19         31.289
LGA    K      20      K      20         31.192
LGA    D      21      D      21         28.433
LGA    L      22      L      22         21.545
LGA    V      23      V      23         22.781
LGA    R      24      R      24         28.567
LGA    Q      25      Q      25         25.180
LGA    I      26      I      26         21.616
LGA    E      27      E      27         27.542
LGA    E      28      E      28         30.954
LGA    F      29      F      29         26.874
LGA    L      30      L      30         28.606
LGA    E      31      E      31         35.225
LGA    E      32      E      32         35.439
LGA    K      33      K      33         31.223
LGA    G      34      G      34         31.896
LGA    I      35      I      35         25.382
LGA    H      36      H      36         23.517
LGA    A      37      A      37         19.196
LGA    A      38      A      38         13.899
LGA    H      39      H      39          6.959
LGA    I      40      I      40          3.912
LGA    S      41      S      41          2.660
LGA    A      42      A      42          2.355
LGA    I      43      I      43          2.267
LGA    G      44      G      44          3.498
LGA    A      45      A      45          2.248
LGA    V      46      V      46          1.832
LGA    R      47      R      47          3.873
LGA    S      48      S      48          2.803
LGA    A      49      A      49          2.947
LGA    V      50      V      50          3.723
LGA    I      51      I      51          3.870
LGA    G      52      G      52          6.678
LGA    Y      53      Y      53          6.498
LGA    Y      54      Y      54          4.114
LGA    D      55      D      55          7.116
LGA    Q      56      Q      56          7.928
LGA    E      57      E      57          9.716
LGA    K      58      K      58          8.903
LGA    K      59      K      59          4.995
LGA    E      60      E      60          3.438
LGA    Y      61      Y      61          3.297
LGA    V      62      V      62          2.472
LGA    K      63      K      63          1.569
LGA    K      64      K      64          2.505
LGA    E      65      E      65          1.413
LGA    L      66      L      66          2.461
LGA    M      67      M      67          2.349
LGA    E      68      E      68          1.949
LGA    P      69      P      69          2.082
LGA    L      70      L      70          3.867
LGA    E      71      E      71          2.230
LGA    I      72      I      72          3.189
LGA    L      73      L      73          3.562
LGA    S      74      S      74          7.910
LGA    L      75      L      75          9.307
LGA    S      76      S      76         10.140
LGA    G      77      G      77         14.712
LGA    N      78      N      78         19.194
LGA    V      79      V      79         18.984
LGA    S      80      S      80         22.430
LGA    M      81      M      81         26.427
LGA    K      82      K      82         27.718
LGA    D      83      D      83         32.708
LGA    S      84      S      84         34.193
LGA    K      85      K      85         31.097
LGA    P      86      P      86         26.612
LGA    F      87      F      87         22.963
LGA    C      88      C      88         18.637
LGA    H      89      H      89         16.078
LGA    I      90      I      90          9.467
LGA    H      91      H      91          5.889
LGA    V      92      V      92          6.436
LGA    L      93      L      93         10.294
LGA    L      94      L      94         12.515
LGA    G      95      G      95         17.143
LGA    K      96      K      96         22.208
LGA    D      97      D      97         26.552
LGA    G      98      G      98         28.428
LGA    E      99      E      99         25.752
LGA    V     100      V     100         19.394
LGA    Y     101      Y     101         14.035
LGA    G     102      G     102          8.704
LGA    G     103      G     103          5.419
LGA    H     104      H     104          3.695
LGA    L     105      L     105          8.586
LGA    F     106      F     106         15.557
LGA    S     107      S     107         21.152
LGA    A     108      A     108         22.491
LGA    E     109      E     109         28.150
LGA    V     110      V     110         25.941
LGA    F     111      F     111         25.445
LGA    A     112      A     112         21.756
LGA    C     113      C     113         20.514
LGA    E     114      E     114         17.304
LGA    V     115      V     115         12.398
LGA    F     116      F     116         13.912
LGA    V     117      V     117         13.220
LGA    L     118      L     118         17.712
LGA    P     119      P     119         20.158
LGA    L     120      L     120         23.967
LGA    S     121      S     121         29.472
LGA    G     122      G     122         32.938
LGA    E     123      E     123         28.960
LGA    A     124      A     124         22.060
LGA    P     125      P     125         17.954
LGA    E     126      E     126         12.818
LGA    R     127      R     127          7.852
LGA    A     128      A     128         10.242
LGA    F     129      F     129          9.480
LGA    D     130      D     130          5.354
LGA    E     131      E     131          8.975
LGA    Q     132      Q     132         11.137
LGA    T     133      T     133          9.658
LGA    G     134      G     134         10.269
LGA    L     135      L     135         11.685
LGA    F     136      F     136         14.751
LGA    L     137      L     137         15.621
LGA    W     138      W     138         19.248
LGA    L     139      L     139         21.590
LGA    E     140      E     140         26.629

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  146  140    4.0     27    2.77    18.214    15.311     0.940

LGA_LOCAL      RMSD =  2.772  Number of atoms =   27  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 18.952  Number of atoms =  140 
Std_ALL_ATOMS  RMSD = 15.201  (standard rmsd on all 140 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.037055 * X  +   0.434836 * Y  +  -0.899747 * Z  +  51.992058
  Y_new =   0.114581 * X  +  -0.896276 * Y  +  -0.428440 * Z  +   2.280166
  Z_new =  -0.992723 * X  +  -0.087218 * Y  +  -0.083035 * Z  +  21.522455 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -2.331631    0.809961  [ DEG:  -133.5926     46.4074 ]
  Theta =   1.450080    1.691513  [ DEG:    83.0834     96.9166 ]
  Phi   =   1.258017   -1.883575  [ DEG:    72.0791   -107.9209 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0312TS168_1                                  
REMARK     2: T0312.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0312TS168_1.T0312.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  146  140   4.0   27   2.77  15.311    15.20
REMARK  ---------------------------------------------------------- 
MOLECULE T0312TS168_1
PFRMAT TS
TARGET T0312
MODEL 1
PARENT N/A
ATOM      1  CA  MET     1      51.279  -3.384  34.154  1.00 25.00           C
ATOM      2  CA  LYS     2      53.037  -0.912  31.787  1.00 25.00           C
ATOM      3  CA  VAL     3      52.028  -2.302  28.404  1.00 25.00           C
ATOM      4  CA  PHE     4      49.318  -0.760  26.287  1.00 25.00           C
ATOM      5  CA  GLU     5      47.680   2.597  25.633  1.00 25.00           C
ATOM      6  CA  PHE     6      45.421   4.294  23.008  1.00 25.00           C
ATOM      7  CA  GLU     7      41.631   3.887  23.412  1.00 25.00           C
ATOM      8  CA  VAL     8      37.901   3.457  23.089  1.00 25.00           C
ATOM      9  CA  GLY     9      36.939   6.786  21.496  1.00 25.00           C
ATOM     10  CA  LYS    10      38.986   8.737  18.962  1.00 25.00           C
ATOM     11  CA  GLY    11      42.713   8.218  19.651  1.00 25.00           C
ATOM     12  CA  PHE    12      45.997   9.220  21.136  1.00 25.00           C
ATOM     13  CA  LEU    13      49.623   8.890  20.224  1.00 25.00           C
ATOM     14  CA  LEU    14      49.981   6.131  22.793  1.00 25.00           C
ATOM     15  CA  ARG    15      53.703   6.743  22.320  1.00 25.00           C
ATOM     16  CA  LEU    16      56.256   7.991  24.865  1.00 25.00           C
ATOM     17  CA  ASP    17      58.141  10.715  26.701  1.00 25.00           C
ATOM     18  CA  TYR    18      60.318  12.585  29.197  1.00 25.00           C
ATOM     19  CA  GLY    19      61.879  13.583  32.478  1.00 25.00           C
ATOM     20  CA  LYS    20      59.154  13.602  35.107  1.00 25.00           C
ATOM     21  CA  ASP    21      58.369  17.070  33.686  1.00 25.00           C
ATOM     22  CA  LEU    22      56.372  15.476  30.834  1.00 25.00           C
ATOM     23  CA  VAL    23      54.422  13.351  33.353  1.00 25.00           C
ATOM     24  CA  ARG    24      53.666  16.474  35.438  1.00 25.00           C
ATOM     25  CA  GLN    25      52.450  18.304  32.302  1.00 25.00           C
ATOM     26  CA  ILE    26      50.198  15.337  31.414  1.00 25.00           C
ATOM     27  CA  GLU    27      48.767  15.326  34.967  1.00 25.00           C
ATOM     28  CA  GLU    28      48.086  19.088  34.729  1.00 25.00           C
ATOM     29  CA  PHE    29      46.323  18.581  31.366  1.00 25.00           C
ATOM     30  CA  LEU    30      44.187  15.786  32.879  1.00 25.00           C
ATOM     31  CA  GLU    31      43.262  18.054  35.823  1.00 25.00           C
ATOM     32  CA  GLU    32      42.291  20.852  33.395  1.00 25.00           C
ATOM     33  CA  LYS    33      44.006  23.571  31.418  1.00 25.00           C
ATOM     34  CA  GLY    34      43.314  22.038  27.967  1.00 25.00           C
ATOM     35  CA  ILE    35      45.814  19.660  26.238  1.00 25.00           C
ATOM     36  CA  HIS    36      48.236  17.882  23.842  1.00 25.00           C
ATOM     37  CA  ALA    37      48.657  14.134  23.160  1.00 25.00           C
ATOM     38  CA  ALA    38      49.721  10.907  24.823  1.00 25.00           C
ATOM     39  CA  HIS    39      53.093  11.671  26.424  1.00 25.00           C
ATOM     40  CA  ILE    40      54.199  12.347  22.822  1.00 25.00           C
ATOM     41  CA  SER    41      56.155  12.473  19.567  1.00 25.00           C
ATOM     42  CA  ALA    42      53.177  11.418  17.383  1.00 25.00           C
ATOM     43  CA  ILE    43      50.927  13.820  15.448  1.00 25.00           C
ATOM     44  CA  GLY    44      51.274  15.289  11.960  1.00 25.00           C
ATOM     45  CA  ALA    45      49.221  13.002   9.800  1.00 25.00           C
ATOM     46  CA  VAL    46      47.443   9.733   9.207  1.00 25.00           C
ATOM     47  CA  ARG    47      50.404   8.584   7.109  1.00 25.00           C
ATOM     48  CA  SER    48      49.620   4.882   7.500  1.00 25.00           C
ATOM     49  CA  ALA    49      51.322   2.949  10.233  1.00 25.00           C
ATOM     50  CA  VAL    50      52.928  -0.052  12.025  1.00 25.00           C
ATOM     51  CA  ILE    51      52.803  -2.439  15.016  1.00 25.00           C
ATOM     52  CA  GLY    52      55.561  -2.419  17.699  1.00 25.00           C
ATOM     53  CA  TYR    53      56.246  -6.130  17.800  1.00 25.00           C
ATOM     54  CA  TYR    54      55.627  -8.347  20.899  1.00 25.00           C
ATOM     55  CA  ASP    55      57.924 -11.294  20.027  1.00 25.00           C
ATOM     56  CA  GLN    56      59.760 -14.475  20.767  1.00 25.00           C
ATOM     57  CA  GLU    57      61.353 -17.428  18.885  1.00 25.00           C
ATOM     58  CA  LYS    58      61.797 -15.863  15.448  1.00 25.00           C
ATOM     59  CA  LYS    59      57.999 -15.742  15.262  1.00 25.00           C
ATOM     60  CA  GLU    60      54.351 -15.189  14.610  1.00 25.00           C
ATOM     61  CA  TYR    61      52.301 -12.036  14.187  1.00 25.00           C
ATOM     62  CA  VAL    62      50.854 -10.763  10.876  1.00 25.00           C
ATOM     63  CA  LYS    63      49.544  -7.237  10.206  1.00 25.00           C
ATOM     64  CA  LYS    64      50.045  -3.557   9.150  1.00 25.00           C
ATOM     65  CA  GLU    65      46.922  -2.725   7.128  1.00 25.00           C
ATOM     66  CA  LEU    66      46.679   0.869   8.357  1.00 25.00           C
ATOM     67  CA  MET    67      45.495   2.128   4.993  1.00 25.00           C
ATOM     68  CA  GLU    68      44.935   5.879   4.543  1.00 25.00           C
ATOM     69  CA  PRO    69      42.279   7.971   6.253  1.00 25.00           C
ATOM     70  CA  LEU    70      43.675  11.525   6.348  1.00 25.00           C
ATOM     71  CA  GLU    71      42.603  11.363  10.044  1.00 25.00           C
ATOM     72  CA  ILE    72      45.037  12.696  12.695  1.00 25.00           C
ATOM     73  CA  LEU    73      45.402   9.198  14.171  1.00 25.00           C
ATOM     74  CA  SER    74      44.480   5.597  13.198  1.00 25.00           C
ATOM     75  CA  LEU    75      46.928   2.686  13.218  1.00 25.00           C
ATOM     76  CA  SER    76      48.943   0.979  15.966  1.00 25.00           C
ATOM     77  CA  GLY    77      47.637  -2.163  14.331  1.00 25.00           C
ATOM     78  CA  ASN    78      47.176  -5.574  15.852  1.00 25.00           C
ATOM     79  CA  VAL    79      49.845  -6.058  18.500  1.00 25.00           C
ATOM     80  CA  SER    80      49.574  -9.736  17.714  1.00 25.00           C
ATOM     81  CA  MET    81      48.664 -13.468  17.562  1.00 25.00           C
ATOM     82  CA  LYS    82      46.687 -16.752  17.371  1.00 25.00           C
ATOM     83  CA  ASP    83      43.473 -17.618  19.212  1.00 25.00           C
ATOM     84  CA  SER    84      43.603 -14.189  20.918  1.00 25.00           C
ATOM     85  CA  LYS    85      44.297 -10.448  20.713  1.00 25.00           C
ATOM     86  CA  PRO    86      45.213  -6.785  20.735  1.00 25.00           C
ATOM     87  CA  PHE    87      43.745  -3.667  19.011  1.00 25.00           C
ATOM     88  CA  CYS    88      43.889  -0.281  17.298  1.00 25.00           C
ATOM     89  CA  HIS    89      43.188   3.231  18.590  1.00 25.00           C
ATOM     90  CA  ILE    90      46.500   5.057  17.839  1.00 25.00           C
ATOM     91  CA  HIS    91      49.367   6.378  15.705  1.00 25.00           C
ATOM     92  CA  VAL    92      50.379   9.078  13.251  1.00 25.00           C
ATOM     93  CA  LEU    93      54.150   8.743  13.064  1.00 25.00           C
ATOM     94  CA  LEU    94      55.298  12.267  12.267  1.00 25.00           C
ATOM     95  CA  GLY    95      55.886  15.036  14.775  1.00 25.00           C
ATOM     96  CA  LYS    96      59.296  15.507  13.136  1.00 25.00           C
ATOM     97  CA  ASP    97      60.864  13.471  10.368  1.00 25.00           C
ATOM     98  CA  GLY    98      61.781   9.782  10.992  1.00 25.00           C
ATOM     99  CA  GLU    99      61.468   9.871  14.769  1.00 25.00           C
ATOM    100  CA  VAL   100      58.057   8.867  16.224  1.00 25.00           C
ATOM    101  CA  TYR   101      55.171   6.690  17.534  1.00 25.00           C
ATOM    102  CA  GLY   102      53.612   3.731  15.792  1.00 25.00           C
ATOM    103  CA  GLY   103      51.973   3.184  19.212  1.00 25.00           C
ATOM    104  CA  HIS   104      52.047  -0.222  20.829  1.00 25.00           C
ATOM    105  CA  LEU   105      48.294   0.115  21.204  1.00 25.00           C
ATOM    106  CA  PHE   106      45.369  -1.374  23.158  1.00 25.00           C
ATOM    107  CA  SER   107      44.917  -3.418  26.373  1.00 25.00           C
ATOM    108  CA  ALA   108      43.840  -0.060  27.863  1.00 25.00           C
ATOM    109  CA  GLU   109      45.312   0.621  31.309  1.00 25.00           C
ATOM    110  CA  VAL   110      48.773   2.026  30.510  1.00 25.00           C
ATOM    111  CA  PHE   111      51.933   2.749  28.413  1.00 25.00           C
ATOM    112  CA  ALA   112      53.147   2.436  24.805  1.00 25.00           C
ATOM    113  CA  CYS   113      55.895  -0.153  24.208  1.00 25.00           C
ATOM    114  CA  GLU   114      56.808   2.114  21.293  1.00 25.00           C
ATOM    115  CA  VAL   115      59.590   4.579  20.487  1.00 25.00           C
ATOM    116  CA  PHE   116      59.070   3.468  16.917  1.00 25.00           C
ATOM    117  CA  VAL   117      59.310   4.888  13.445  1.00 25.00           C
ATOM    118  CA  LEU   118      57.791   6.448  10.267  1.00 25.00           C
ATOM    119  CA  PRO   119      58.263   8.480   7.136  1.00 25.00           C
ATOM    120  CA  LEU   120      60.464   5.575   6.062  1.00 25.00           C
ATOM    121  CA  SER   121      61.408   4.313   2.585  1.00 25.00           C
ATOM    122  CA  GLY   122      59.340   1.333   1.692  1.00 25.00           C
ATOM    123  CA  GLU   123      58.700   0.719   5.366  1.00 25.00           C
ATOM    124  CA  ALA   124      58.735   0.387   9.132  1.00 25.00           C
ATOM    125  CA  PRO   125      58.542  -0.449  12.871  1.00 25.00           C
ATOM    126  CA  GLU   126      61.629  -0.512  15.073  1.00 25.00           C
ATOM    127  CA  ARG   127      61.592  -2.756  18.144  1.00 25.00           C
ATOM    128  CA  ALA   128      59.308  -2.978  21.109  1.00 25.00           C
ATOM    129  CA  PHE   129      58.558  -5.074  24.134  1.00 25.00           C
ATOM    130  CA  ASP   130      61.786  -7.015  23.614  1.00 25.00           C
ATOM    131  CA  GLU   131      65.417  -6.244  24.432  1.00 25.00           C
ATOM    132  CA  GLN   132      66.881  -5.425  27.858  1.00 25.00           C
ATOM    133  CA  THR   133      64.306  -6.296  30.437  1.00 25.00           C
ATOM    134  CA  GLY   134      60.535  -6.724  30.437  1.00 25.00           C
ATOM    135  CA  LEU   135      59.829  -8.604  33.711  1.00 25.00           C
ATOM    136  CA  PHE   136      61.862 -10.620  36.281  1.00 25.00           C
ATOM    137  CA  LEU   137      59.981 -11.819  39.361  1.00 25.00           C
ATOM    138  CA  TRP   138      58.426 -12.134  42.814  1.00 25.00           C
ATOM    139  CA  LEU   139      57.741 -15.615  44.100  1.00 25.00           C
ATOM    140  CA  GLU   140      57.086 -19.246  44.995  1.00 25.00           C
ATOM    141  CA  HIS   141      53.424 -18.708  44.122  1.00 25.00           C
ATOM    142  CA  HIS   142      49.951 -18.240  45.565  1.00 25.00           C
ATOM    143  CA  HIS   143      51.320 -16.355  48.558  1.00 25.00           C
ATOM    144  CA  HIS   144      50.966 -12.576  49.186  1.00 25.00           C
ATOM    145  CA  HIS   145      47.211 -13.067  48.834  1.00 25.00           C
ATOM    146  CA  HIS   146      45.646 -10.580  46.412  1.00 25.00           C
TER
END
