
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  146 (  146),  selected  140 , name T0312TS599_1
# Molecule2: number of CA atoms  140 ( 1114),  selected  140 , name T0312.pdb
# PARAMETERS: T0312TS599_1.T0312.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    45         6 - 50          4.75    18.29
  LONGEST_CONTINUOUS_SEGMENT:    45         7 - 51          4.61    18.38
  LONGEST_CONTINUOUS_SEGMENT:    45         8 - 52          4.88    18.45
  LCS_AVERAGE:     24.10

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    27         9 - 35          1.93    21.30
  LCS_AVERAGE:     11.33

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    16        21 - 36          0.75    17.61
  LONGEST_CONTINUOUS_SEGMENT:    16        22 - 37          0.91    17.80
  LCS_AVERAGE:      6.22

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  140
LCS_GDT     M       1     M       1      7    9   12     5    6    7    8    9   10   10   11   11   12   13   13   16   20   22   25   25   31   34   35 
LCS_GDT     K       2     K       2      7    9   12     5    6    7    8    9   10   10   11   11   11   13   13   15   20   22   25   25   31   34   35 
LCS_GDT     V       3     V       3      7    9   12     5    6    7    8    9   10   10   11   11   12   13   13   16   20   22   25   25   31   34   35 
LCS_GDT     F       4     F       4      7    9   12     5    6    7    8    9   10   10   11   11   12   13   13   16   20   22   25   25   31   34   35 
LCS_GDT     E       5     E       5      7    9   12     5    6    7    8    9   10   10   11   11   12   13   13   17   18   20   25   29   40   42   42 
LCS_GDT     F       6     F       6      7    9   45     5    6    7    8    9   10   13   18   19   21   28   29   32   35   37   41   58   63   67   72 
LCS_GDT     E       7     E       7      7    9   45     3    5    7    8    9   10   10   11   14   29   35   42   49   54   58   64   70   74   75   77 
LCS_GDT     V       8     V       8      6    9   45     3    4   10   17   24   25   29   35   40   47   52   57   62   64   66   69   71   74   75   77 
LCS_GDT     G       9     G       9      5   27   45     3    4   13   21   24   27   32   36   42   47   52   57   62   64   66   69   71   74   75   77 
LCS_GDT     K      10     K      10      9   27   45     5    7   12   21   23   27   32   36   42   47   52   57   62   64   66   69   71   74   75   77 
LCS_GDT     G      11     G      11      9   27   45     5    7   12   21   23   27   32   36   42   47   52   57   62   64   66   69   71   74   75   77 
LCS_GDT     F      12     F      12      9   27   45     5    7   10   19   23   27   32   36   42   47   52   57   62   64   66   69   71   74   75   77 
LCS_GDT     L      13     L      13      9   27   45     5    7   12   21   23   27   32   36   42   47   52   57   62   64   66   69   71   74   75   77 
LCS_GDT     L      14     L      14      9   27   45     5    7   10   21   23   27   32   36   42   47   52   57   62   64   66   69   71   74   75   77 
LCS_GDT     R      15     R      15      9   27   45     3    8   15   21   24   27   32   36   42   47   52   57   62   64   66   69   71   74   75   77 
LCS_GDT     L      16     L      16      9   27   45     3    8   15   21   24   27   32   36   42   47   52   57   62   64   66   69   71   74   75   77 
LCS_GDT     D      17     D      17      9   27   45     4    8   10   17   22   27   29   35   42   47   52   57   62   64   66   69   71   74   75   77 
LCS_GDT     Y      18     Y      18     10   27   45     4    8   15   21   24   27   32   36   42   47   52   57   62   64   66   69   71   74   75   77 
LCS_GDT     G      19     G      19     15   27   45     5   11   16   21   24   27   32   36   42   47   52   57   62   64   66   69   71   74   75   77 
LCS_GDT     K      20     K      20     15   27   45     4    8   15   21   24   27   32   36   42   47   52   57   62   64   66   69   71   74   75   77 
LCS_GDT     D      21     D      21     16   27   45     5   14   17   21   24   27   32   36   42   47   52   57   62   64   66   69   71   74   75   77 
LCS_GDT     L      22     L      22     16   27   45     9   15   17   21   24   27   32   36   42   47   52   57   62   64   66   69   71   74   75   77 
LCS_GDT     V      23     V      23     16   27   45     8   15   17   21   24   27   32   36   42   47   52   57   62   64   66   69   71   74   75   77 
LCS_GDT     R      24     R      24     16   27   45     7   15   17   21   24   27   32   36   42   47   52   57   62   64   66   69   71   74   75   77 
LCS_GDT     Q      25     Q      25     16   27   45     8   15   17   21   24   27   32   36   42   47   52   57   62   64   66   69   71   74   75   77 
LCS_GDT     I      26     I      26     16   27   45     8   15   17   21   24   27   32   36   42   47   52   57   62   64   66   69   71   74   75   77 
LCS_GDT     E      27     E      27     16   27   45     8   15   17   21   24   27   32   36   42   47   52   57   62   64   66   69   71   74   75   77 
LCS_GDT     E      28     E      28     16   27   45     9   15   17   21   24   27   32   36   42   47   52   57   62   64   66   69   71   74   75   77 
LCS_GDT     F      29     F      29     16   27   45     9   15   17   21   24   27   32   36   42   47   52   57   62   64   66   69   71   74   75   77 
LCS_GDT     L      30     L      30     16   27   45     9   15   17   21   24   27   32   36   42   47   52   57   62   64   66   69   71   74   75   77 
LCS_GDT     E      31     E      31     16   27   45     9   15   17   21   24   27   32   36   42   47   52   57   62   64   66   69   71   74   75   77 
LCS_GDT     E      32     E      32     16   27   45     9   15   17   21   24   27   32   36   42   47   52   57   62   64   66   69   71   74   75   77 
LCS_GDT     K      33     K      33     16   27   45     9   15   17   21   24   27   32   36   42   47   52   57   62   64   66   69   71   74   75   77 
LCS_GDT     G      34     G      34     16   27   45     9   15   17   21   24   27   32   36   42   47   52   57   62   64   66   69   71   74   75   77 
LCS_GDT     I      35     I      35     16   27   45     9   15   17   20   24   27   31   36   42   47   52   57   62   64   66   69   71   74   75   77 
LCS_GDT     H      36     H      36     16   25   45     3   14   17   20   24   27   30   35   42   47   52   57   62   64   66   69   71   74   75   77 
LCS_GDT     A      37     A      37     16   25   45     3    6   16   19   24   25   29   35   42   47   52   57   62   64   66   69   71   74   75   77 
LCS_GDT     A      38     A      38      7   25   45     5    6    7   11   15   23   28   35   41   47   52   57   62   64   66   69   71   74   75   77 
LCS_GDT     H      39     H      39      7   25   45     5    6   11   15   20   23   28   35   40   47   51   57   62   64   66   69   71   74   75   77 
LCS_GDT     I      40     I      40      7   25   45     5    6   13   18   20   25   28   35   41   47   51   57   62   64   66   69   71   74   75   77 
LCS_GDT     S      41     S      41      7   25   45     5   11   16   19   24   25   28   35   41   47   52   57   62   64   66   69   71   74   75   77 
LCS_GDT     A      42     A      42      7   25   45     5    6   16   19   24   25   28   35   41   47   52   57   62   64   66   69   71   74   75   77 
LCS_GDT     I      43     I      43      7   25   45     4   14   16   19   24   25   28   35   41   47   52   57   62   64   66   69   71   74   75   77 
LCS_GDT     G      44     G      44      8   25   45     4    8   10   19   24   25   29   35   41   47   52   57   62   64   66   69   71   74   75   77 
LCS_GDT     A      45     A      45      8   25   45     3    4   14   20   24   27   32   36   42   47   52   57   62   64   66   69   71   74   75   77 
LCS_GDT     V      46     V      46      9   15   45     4   11   16   21   24   27   32   36   42   47   52   57   62   64   66   69   71   74   75   77 
LCS_GDT     R      47     R      47      9   15   45     4    8   11   14   16   17   28   32   39   47   50   57   62   64   66   69   71   74   75   77 
LCS_GDT     S      48     S      48      9   15   45     4    8   11   14   16   17   23   29   34   42   50   57   62   64   66   69   71   74   75   77 
LCS_GDT     A      49     A      49      9   15   45     4    8   11   14   16   17   20   23   27   37   41   50   56   64   66   69   71   74   75   77 
LCS_GDT     V      50     V      50      9   15   45     4    8   11   14   16   17   20   22   23   28   33   42   46   51   56   59   68   70   74   77 
LCS_GDT     I      51     I      51      9   15   45     4    8   11   14   16   17   20   22   23   28   30   32   37   43   48   52   57   61   65   72 
LCS_GDT     G      52     G      52      9   15   45     3    8   11   14   16   17   19   22   23   28   30   32   36   36   39   42   47   53   59   62 
LCS_GDT     Y      53     Y      53      9   15   28     4    8   11   14   16   17   19   22   23   28   30   32   36   36   39   42   45   51   57   61 
LCS_GDT     Y      54     Y      54      9   15   28     4    7   11   14   16   17   19   22   23   28   30   32   36   36   39   42   45   51   57   61 
LCS_GDT     D      55     D      55      8   15   28     4    8   10   14   16   17   20   22   23   28   30   32   33   36   39   42   44   48   52   56 
LCS_GDT     Q      56     Q      56      8   15   28     4    8   11   14   16   17   19   22   23   28   30   32   33   35   39   42   44   46   50   53 
LCS_GDT     E      57     E      57      5   15   28     3    5    9   12   14   17   20   22   23   26   29   32   33   35   39   40   44   45   47   51 
LCS_GDT     K      58     K      58      4   12   31     3    4    6    8   10   13   15   20   22   25   28   29   30   34   37   39   41   44   47   50 
LCS_GDT     K      59     K      59     12   18   33     3    5   10   14   15   17   18   19   22   25   28   32   34   35   37   39   42   45   47   49 
LCS_GDT     E      60     E      60     12   18   37     3    8   12   14   15   17   18   19   23   26   28   31   34   36   36   40   42   44   46   48 
LCS_GDT     Y      61     Y      61     12   18   37     4   10   12   14   15   17   18   19   23   26   28   31   34   36   36   40   42   44   46   48 
LCS_GDT     V      62     V      62     12   18   37     4   10   12   14   15   17   18   19   23   25   28   31   34   36   36   40   42   44   46   48 
LCS_GDT     K      63     K      63     12   18   37     5   10   12   14   15   17   18   19   22   25   28   31   34   36   36   40   42   44   46   48 
LCS_GDT     K      64     K      64     12   18   37     5   10   12   14   15   17   18   21   24   25   28   31   33   36   36   40   42   44   46   48 
LCS_GDT     E      65     E      65     12   18   37     5   10   12   14   15   17   18   21   24   25   28   31   33   36   36   40   42   44   46   48 
LCS_GDT     L      66     L      66     12   18   37     6   10   12   14   15   17   18   21   24   25   28   31   33   36   36   40   42   44   46   48 
LCS_GDT     M      67     M      67     12   18   37     5   10   12   14   15   17   18   21   24   25   28   31   33   36   36   39   42   44   45   47 
LCS_GDT     E      68     E      68     12   18   37     5   10   12   14   15   17   18   21   24   25   28   31   33   36   36   39   42   44   46   48 
LCS_GDT     P      69     P      69     12   18   37     6   10   12   14   15   17   18   21   24   25   28   31   33   36   36   41   47   56   73   77 
LCS_GDT     L      70     L      70     12   18   37     6   10   12   14   15   17   18   21   24   28   40   50   54   61   66   69   71   73   75   77 
LCS_GDT     E      71     E      71     12   18   37     6    8   16   20   24   27   32   36   42   47   52   57   62   64   66   69   71   74   75   77 
LCS_GDT     I      72     I      72     10   18   37     7   15   17   20   24   27   32   36   42   47   52   57   62   64   66   69   71   74   75   77 
LCS_GDT     L      73     L      73     10   18   37     4    8    9   13   15   25   27   34   41   47   50   54   59   61   64   66   70   74   75   77 
LCS_GDT     S      74     S      74     10   18   37     4    8    9   13   15   18   26   33   36   47   49   51   53   59   60   65   70   71   73   77 
LCS_GDT     L      75     L      75     10   18   37     6    8   12   18   24   27   32   36   42   47   52   57   62   64   66   69   70   74   75   77 
LCS_GDT     S      76     S      76     10   18   37     3    8   12   14   23   27   30   35   40   47   50   52   58   61   65   65   70   73   73   77 
LCS_GDT     G      77     G      77     10   17   37     3    5   14   19   23   27   32   36   42   47   52   57   62   64   66   69   71   74   75   77 
LCS_GDT     N      78     N      78     10   17   37     3    8    9   13   15   25   32   36   42   47   52   57   62   64   66   69   70   74   75   77 
LCS_GDT     V      79     V      79     10   17   37     3    8    9   13   15   18   21   24   33   43   50   57   62   64   66   69   71   74   75   77 
LCS_GDT     S      80     S      80     10   17   37     3    7    9   13   15   18   21   33   40   47   52   57   62   64   66   69   71   74   75   77 
LCS_GDT     M      81     M      81      5   17   37     3    5    9   13   15   17   18   24   32   41   48   55   57   64   66   69   71   74   75   77 
LCS_GDT     K      82     K      82      5   17   37     3    4    6   11   14   17   21   26   32   37   44   53   57   62   66   69   71   74   75   77 
LCS_GDT     D      83     D      83      4   11   37     3    4    5    7   13   14   18   21   24   30   36   40   47   53   61   67   71   74   75   77 
LCS_GDT     S      84     S      84      4   14   37     3    5    7   11   13   15   18   21   24   27   30   36   44   53   63   67   71   74   75   77 
LCS_GDT     K      85     K      85     10   14   37     4    8   10   12   13   15   18   21   24   30   31   35   40   47   54   67   71   74   75   77 
LCS_GDT     P      86     P      86     10   14   37     4    8   10   12   13   15   17   21   24   27   29   33   36   40   45   49   59   65   70   76 
LCS_GDT     F      87     F      87     10   14   37     4    8   10   12   13   16   21   24   28   30   32   36   50   60   66   69   71   74   75   77 
LCS_GDT     C      88     C      88     10   14   37     4    8   10   12   13   15   18   24   28   30   32   35   40   57   66   69   71   74   75   77 
LCS_GDT     H      89     H      89     10   14   37     4    8   10   12   13   18   21   24   30   44   50   57   62   64   66   69   71   74   75   77 
LCS_GDT     I      90     I      90     10   14   37     3    8   10   12   13   18   21   24   37   47   52   57   62   64   66   69   71   74   75   77 
LCS_GDT     H      91     H      91     10   14   37     3    8   10   12   22   27   30   36   42   47   52   57   62   64   66   69   71   74   75   77 
LCS_GDT     V      92     V      92     10   14   37     4    8   13   20   24   27   30   36   42   47   52   57   62   64   66   69   71   74   75   77 
LCS_GDT     L      93     L      93     10   14   37     4   14   17   20   24   27   32   36   42   47   52   57   62   64   66   69   71   74   75   77 
LCS_GDT     L      94     L      94     10   14   37     4    5   10   13   24   27   30   35   42   47   52   57   62   64   66   69   71   74   75   77 
LCS_GDT     G      95     G      95      7   14   37     4    4    7   18   24   27   30   35   42   47   52   57   62   64   66   69   71   74   75   77 
LCS_GDT     K      96     K      96      4   14   37     3    4    9   12   15   27   29   35   42   47   52   57   62   64   66   69   71   74   75   77 
LCS_GDT     D      97     D      97      5   14   37     3    7   10   12   15   27   29   35   40   47   52   57   62   64   66   69   71   74   75   77 
LCS_GDT     G      98     G      98      6   14   37     3    6    7   10   15   18   20   22   25   27   33   36   55   61   66   69   71   74   75   77 
LCS_GDT     E      99     E      99      6   14   37     3    6    7   11   15   18   20   24   26   35   48   52   55   63   66   69   71   74   75   77 
LCS_GDT     V     100     V     100      6   14   37     3    6    7   11   15   18   21   25   30   41   48   55   62   64   66   69   71   74   75   77 
LCS_GDT     Y     101     Y     101      6   14   37     3    6    7   11   15   18   28   32   38   47   50   57   62   64   66   69   71   74   75   77 
LCS_GDT     G     102     G     102      6   14   37     3    6    7   11   15   22   28   33   40   47   50   57   62   64   66   69   71   74   75   77 
LCS_GDT     G     103     G     103      6   14   37     3    6    7   11   15   19   28   35   40   47   52   57   62   64   66   69   71   74   75   77 
LCS_GDT     H     104     H     104      6   14   37     3    5    6   10   15   18   21   30   37   45   50   57   62   64   66   69   71   74   75   77 
LCS_GDT     L     105     L     105      5    9   37     3    5    6    8   10   13   15   20   24   27   29   32   36   40   45   49   60   62   73   77 
LCS_GDT     F     106     F     106      5    9   37     3    5    6    8    8   13   17   20   24   27   28   32   35   38   41   48   53   59   67   74 
LCS_GDT     S     107     S     107      3    9   37     3    3    3    4    6   10   10   13   16   26   28   32   34   36   40   44   51   58   62   72 
LCS_GDT     A     108     A     108      3    4   37     3    3    4    5    5    7   13   18   23   26   28   31   34   36   36   40   42   44   46   53 
LCS_GDT     E     109     E     109      3    5   21     3    3    4    5    5    7    8    8   13   14   25   29   31   34   35   40   42   44   46   48 
LCS_GDT     V     110     V     110      4    5   21     3    3    4    5    5    7    9   12   14   15   18   23   24   26   28   31   36   39   41   44 
LCS_GDT     F     111     F     111      4    5   21     3    3    4    4    4    6    6   11   12   15   16   19   20   24   28   31   32   35   35   39 
LCS_GDT     A     112     A     112      4    5   21     3    3    4    4    4    6    6   11   12   15   19   22   25   28   30   32   36   39   41   44 
LCS_GDT     C     113     C     113      4    5   21     3    3    5    5    6    9   10   12   15   18   23   24   27   29   31   35   36   39   41   44 
LCS_GDT     E     114     E     114      8    8   21     3    8    8    8    8    9    9   11   14   16   19   24   27   30   31   35   38   40   43   46 
LCS_GDT     V     115     V     115      8    8   19     6    8    8    8   12   13   14   17   18   22   25   26   37   45   56   63   66   68   73   77 
LCS_GDT     F     116     F     116      8    8   18     6    8    8    8    8    9   13   17   18   22   25   39   48   57   59   64   69   73   75   77 
LCS_GDT     V     117     V     117      8    8   18     6    8    8    8    8    9    9   11   14   16   18   23   38   48   55   57   70   71   72   77 
LCS_GDT     L     118     L     118      8    8   18     5    8    8    8    8    9    9   11   14   15   18   21   24   27   32   37   41   51   70   75 
LCS_GDT     P     119     P     119      8    8   18     6    8    8    8    8    9    9   11   14   15   18   19   22   24   29   33   36   42   43   47 
LCS_GDT     L     120     L     120      8    8   18     6    8    8    8    8    9   10   11   14   15   18   20   25   27   29   33   37   42   43   47 
LCS_GDT     S     121     S     121      8    8   18     6    8    8    8    8    9   10   11   13   15   18   21   25   27   29   33   37   42   43   47 
LCS_GDT     G     122     G     122      5    7   18     3    5    5    7    7    9   10   11   14   15   18   21   25   27   29   33   37   42   43   47 
LCS_GDT     E     123     E     123      5    7   15     4    5    5    7    7    9   10   10   11   12   16   21   25   27   29   33   37   42   43   47 
LCS_GDT     A     124     A     124      5    7   15     4    5    5    7    7    9   10   10   11   13   16   21   25   27   29   33   37   42   43   47 
LCS_GDT     P     125     P     125      5    7   15     4    5    5    7    7    9   10   10   11   13   16   21   25   27   29   33   37   42   44   49 
LCS_GDT     E     126     E     126      5    7   15     4    5    5    7    7    9   10   10   11   14   17   21   25   27   29   33   37   42   43   47 
LCS_GDT     R     127     R     127      3    4   15     3    3    3    4    4    6    6    8   10   13   16   21   25   27   29   33   37   42   43   47 
LCS_GDT     A     128     A     128      3    6   15     3    3    4    4    5    7    8    8    9   11   16   21   25   27   29   33   37   39   41   47 
LCS_GDT     F     129     F     129      3    6   15     3    3    4    4    5    7    8    8    9   12   16   21   25   27   29   33   37   42   43   47 
LCS_GDT     D     130     D     130      3    6   15     3    3    4    5    5    7    8    8   10   13   16   21   25   27   29   34   43   48   56   64 
LCS_GDT     E     131     E     131      6    7   15     3    5    5    6    8    8    9   10   11   12   14   17   23   27   29   33   37   46   47   54 
LCS_GDT     Q     132     Q     132      6    7   15     3    5    5    6    8    8    9   10   11   14   19   22   29   36   42   46   51   58   72   74 
LCS_GDT     T     133     T     133      6    7   15     3    5    5    6    8    8   11   12   17   21   28   34   38   46   52   61   67   73   75   77 
LCS_GDT     G     134     G     134      6    7   15     3    4    5    6    8    8    9   10   11   12   16   21   25   27   36   41   50   55   60   65 
LCS_GDT     L     135     L     135      6    7   15     3    5    5    6    8    8    9   10   11   12   20   22   25   31   40   52   66   73   75   77 
LCS_GDT     F     136     F     136      6    7   13     3    5    5    6    8    8    9   10   11   12   14   17   20   23   27   31   39   47   53   59 
LCS_GDT     L     137     L     137      5    7   13     3    4    4    6    7    8    9   10   11   12   14   17   19   23   26   28   32   33   43   44 
LCS_GDT     W     138     W     138      5    7   13     3    4    4    6    6    8    8   10   11   12   13   17   19   22   25   28   30   33   35   39 
LCS_GDT     L     139     L     139      5    7   13     3    3    4    6    6    7    8   10   11   11   13   14   18   22   23   25   27   28   29   34 
LCS_GDT     E     140     E     140      3    7   13     3    3    4    4    6    7    8    9   11   11   13   14   15   18   20   25   27   28   29   32 
LCS_AVERAGE  LCS_A:  13.88  (   6.22   11.33   24.10 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA      9     15     17     21     24     27     32     36     42     47     52     57     62     64     66     69     71     74     75     77 
GDT PERCENT_CA   6.43  10.71  12.14  15.00  17.14  19.29  22.86  25.71  30.00  33.57  37.14  40.71  44.29  45.71  47.14  49.29  50.71  52.86  53.57  55.00
GDT RMS_LOCAL    0.26   0.60   0.78   1.33   1.51   1.77   2.22   2.46   2.88   3.23   3.62   3.90   4.20   4.38   4.58   4.85   5.37   5.52   5.57   5.62
GDT RMS_ALL_CA  17.16  18.10  18.03  20.31  17.83  17.57  19.97  19.44  18.92  19.62  18.13  17.93  17.64  17.48  17.28  17.32  16.69  16.74  16.85  17.15

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         41.604
LGA    K       2      K       2         35.077
LGA    V       3      V       3         32.249
LGA    F       4      F       4         26.198
LGA    E       5      E       5         23.739
LGA    F       6      F       6         17.700
LGA    E       7      E       7         13.160
LGA    V       8      V       8          8.231
LGA    G       9      G       9          1.882
LGA    K      10      K      10          3.533
LGA    G      11      G      11          3.820
LGA    F      12      F      12          3.645
LGA    L      13      L      13          3.379
LGA    L      14      L      14          2.997
LGA    R      15      R      15          2.743
LGA    L      16      L      16          2.378
LGA    D      17      D      17          4.195
LGA    Y      18      Y      18          3.192
LGA    G      19      G      19          1.240
LGA    K      20      K      20          1.974
LGA    D      21      D      21          1.119
LGA    L      22      L      22          1.269
LGA    V      23      V      23          1.230
LGA    R      24      R      24          1.179
LGA    Q      25      Q      25          1.133
LGA    I      26      I      26          1.024
LGA    E      27      E      27          1.121
LGA    E      28      E      28          1.214
LGA    F      29      F      29          1.240
LGA    L      30      L      30          1.609
LGA    E      31      E      31          1.654
LGA    E      32      E      32          0.966
LGA    K      33      K      33          1.942
LGA    G      34      G      34          2.844
LGA    I      35      I      35          3.487
LGA    H      36      H      36          4.641
LGA    A      37      A      37          4.740
LGA    A      38      A      38          5.575
LGA    H      39      H      39          6.256
LGA    I      40      I      40          5.993
LGA    S      41      S      41          6.223
LGA    A      42      A      42          5.601
LGA    I      43      I      43          6.176
LGA    G      44      G      44          5.000
LGA    A      45      A      45          2.835
LGA    V      46      V      46          1.574
LGA    R      47      R      47          6.434
LGA    S      48      S      48          7.415
LGA    A      49      A      49          8.146
LGA    V      50      V      50         10.965
LGA    I      51      I      51         13.594
LGA    G      52      G      52         17.287
LGA    Y      53      Y      53         20.456
LGA    Y      54      Y      54         22.493
LGA    D      55      D      55         27.742
LGA    Q      56      Q      56         29.468
LGA    E      57      E      57         35.101
LGA    K      58      K      58         36.492
LGA    K      59      K      59         36.869
LGA    E      60      E      60         37.294
LGA    Y      61      Y      61         34.258
LGA    V      62      V      62         35.802
LGA    K      63      K      63         33.797
LGA    K      64      K      64         30.936
LGA    E      65      E      65         30.850
LGA    L      66      L      66         25.482
LGA    M      67      M      67         26.317
LGA    E      68      E      68         20.894
LGA    P      69      P      69         14.323
LGA    L      70      L      70         10.085
LGA    E      71      E      71          3.163
LGA    I      72      I      72          1.474
LGA    L      73      L      73          5.535
LGA    S      74      S      74          6.271
LGA    L      75      L      75          2.954
LGA    S      76      S      76          4.524
LGA    G      77      G      77          1.945
LGA    N      78      N      78          3.344
LGA    V      79      V      79          7.328
LGA    S      80      S      80          7.330
LGA    M      81      M      81         12.757
LGA    K      82      K      82         14.601
LGA    D      83      D      83         19.433
LGA    S      84      S      84         19.668
LGA    K      85      K      85         17.665
LGA    P      86      P      86         17.749
LGA    F      87      F      87         13.545
LGA    C      88      C      88         12.621
LGA    H      89      H      89          7.894
LGA    I      90      I      90          7.248
LGA    H      91      H      91          3.915
LGA    V      92      V      92          3.962
LGA    L      93      L      93          2.708
LGA    L      94      L      94          5.973
LGA    G      95      G      95          5.444
LGA    K      96      K      96          5.960
LGA    D      97      D      97          7.169
LGA    G      98      G      98         12.275
LGA    E      99      E      99         11.594
LGA    V     100      V     100         10.544
LGA    Y     101      Y     101         10.081
LGA    G     102      G     102          9.791
LGA    G     103      G     103          9.492
LGA    H     104      H     104         11.544
LGA    L     105      L     105         17.391
LGA    F     106      F     106         20.909
LGA    S     107      S     107         19.729
LGA    A     108      A     108         20.621
LGA    E     109      E     109         26.744
LGA    V     110      V     110         25.231
LGA    F     111      F     111         23.487
LGA    A     112      A     112         20.031
LGA    C     113      C     113         20.059
LGA    E     114      E     114         16.798
LGA    V     115      V     115         10.748
LGA    F     116      F     116          8.863
LGA    V     117      V     117         10.974
LGA    L     118      L     118         14.920
LGA    P     119      P     119         21.247
LGA    L     120      L     120         26.746
LGA    S     121      S     121         32.794
LGA    G     122      G     122         36.831
LGA    E     123      E     123         35.681
LGA    A     124      A     124         32.832
LGA    P     125      P     125         29.923
LGA    E     126      E     126         33.028
LGA    R     127      R     127         35.366
LGA    A     128      A     128         36.050
LGA    F     129      F     129         34.176
LGA    D     130      D     130         34.515
LGA    E     131      E     131         37.790
LGA    Q     132      Q     132         33.655
LGA    T     133      T     133         28.170
LGA    G     134      G     134         30.639
LGA    L     135      L     135         24.678
LGA    F     136      F     136         27.035
LGA    L     137      L     137         24.736
LGA    W     138      W     138         27.918
LGA    L     139      L     139         33.111
LGA    E     140      E     140         33.740

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  146  140    4.0     36    2.46    25.179    22.247     1.404

LGA_LOCAL      RMSD =  2.465  Number of atoms =   36  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 19.482  Number of atoms =  140 
Std_ALL_ATOMS  RMSD = 15.242  (standard rmsd on all 140 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.197522 * X  +   0.921853 * Y  +  -0.333424 * Z  +  53.302879
  Y_new =   0.751880 * X  +  -0.075778 * Y  +  -0.654930 * Z  +  12.179537
  Z_new =  -0.629016 * X  +  -0.380058 * Y  +  -0.678155 * Z  +  21.563126 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -2.630778    0.510815  [ DEG:  -150.7325     29.2675 ]
  Theta =   0.680287    2.461306  [ DEG:    38.9776    141.0224 ]
  Phi   =   1.827695   -1.313897  [ DEG:   104.7192    -75.2808 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0312TS599_1                                  
REMARK     2: T0312.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0312TS599_1.T0312.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  146  140   4.0   36   2.46  22.247    15.24
REMARK  ---------------------------------------------------------- 
MOLECULE T0312TS599_1
PFRMAT TS                                                                       
TARGET T0312                                                                    
MODEL  1                                                                        
PARENT N/A                                                                      
ATOM      1  CA  MET     1      57.747  21.075   4.599  1.00  0.00              
ATOM      2  CA  LYS     2      59.189  19.261   8.114  1.00  0.00              
ATOM      3  CA  VAL     3      59.157  21.137  11.229  1.00  0.00              
ATOM      4  CA  PHE     4      61.763  20.363  14.008  1.00  0.00              
ATOM      5  CA  GLU     5      61.231  21.753  17.370  1.00  0.00              
ATOM      6  CA  PHE     6      63.949  21.642  19.947  1.00  0.00              
ATOM      7  CA  GLU     7      62.989  21.792  23.576  1.00  0.00              
ATOM      8  CA  VAL     8      65.424  23.070  26.104  1.00  0.00              
ATOM      9  CA  GLY     9      66.740  20.094  28.000  1.00  0.00              
ATOM     10  CA  LYS    10      67.329  17.734  25.047  1.00  0.00              
ATOM     11  CA  GLY    11      63.873  16.807  23.646  1.00  0.00              
ATOM     12  CA  PHE    12      63.251  16.867  19.949  1.00  0.00              
ATOM     13  CA  LEU    13      59.725  17.417  18.669  1.00  0.00              
ATOM     14  CA  LEU    14      59.111  16.400  15.107  1.00  0.00              
ATOM     15  CA  ARG    15      56.077  17.601  13.187  1.00  0.00              
ATOM     16  CA  LEU    16      55.183  15.651  10.196  1.00  0.00              
ATOM     17  CA  ASP    17      53.340  16.989   7.122  1.00  0.00              
ATOM     18  CA  TYR    18      51.474  14.708   4.806  1.00  0.00              
ATOM     19  CA  GLY    19      53.711  12.346   2.903  1.00  0.00              
ATOM     20  CA  LYS    20      56.673  12.421   5.312  1.00  0.00              
ATOM     21  CA  ASP    21      58.297   9.198   6.545  1.00  0.00              
ATOM     22  CA  LEU    22      57.909   9.754  10.270  1.00  0.00              
ATOM     23  CA  VAL    23      60.253   7.384  11.755  1.00  0.00              
ATOM     24  CA  ARG    24      63.069   7.998   9.328  1.00  0.00              
ATOM     25  CA  GLN    25      62.843  11.711   9.651  1.00  0.00              
ATOM     26  CA  ILE    26      62.833  11.702  13.404  1.00  0.00              
ATOM     27  CA  GLU    27      65.767   9.437  13.909  1.00  0.00              
ATOM     28  CA  GLU    28      67.813  11.432  11.622  1.00  0.00              
ATOM     29  CA  PHE    29      67.008  14.753  13.114  1.00  0.00              
ATOM     30  CA  LEU    30      67.537  13.673  16.672  1.00  0.00              
ATOM     31  CA  GLU    31      70.878  12.127  15.942  1.00  0.00              
ATOM     32  CA  GLU    32      72.071  15.114  14.002  1.00  0.00              
ATOM     33  CA  LYS    33      71.283  17.616  16.673  1.00  0.00              
ATOM     34  CA  GLY    34      72.484  15.518  19.570  1.00  0.00              
ATOM     35  CA  ILE    35      68.978  15.429  21.090  1.00  0.00              
ATOM     36  CA  HIS    36      67.921  12.576  23.275  1.00  0.00              
ATOM     37  CA  ALA    37      64.212  11.777  22.950  1.00  0.00              
ATOM     38  CA  ALA    38      62.246  12.049  19.747  1.00  0.00              
ATOM     39  CA  HIS    39      58.554  12.928  19.707  1.00  0.00              
ATOM     40  CA  ILE    40      56.572  12.661  16.517  1.00  0.00              
ATOM     41  CA  SER    41      53.509  14.750  15.813  1.00  0.00              
ATOM     42  CA  ALA    42      51.379  13.989  12.864  1.00  0.00              
ATOM     43  CA  ILE    43      49.344  16.550  10.988  1.00  0.00              
ATOM     44  CA  GLY    44      46.910  15.219   8.386  1.00  0.00              
ATOM     45  CA  ALA    45      46.155  11.476   8.123  1.00  0.00              
ATOM     46  CA  VAL    46      49.478   9.986   9.093  1.00  0.00              
ATOM     47  CA  ARG    47      48.880   6.510   9.992  1.00  0.00              
ATOM     48  CA  SER    48      51.887   4.950  11.624  1.00  0.00              
ATOM     49  CA  ALA    49      54.089   7.221  13.633  1.00  0.00              
ATOM     50  CA  VAL    50      56.664   5.994  16.170  1.00  0.00              
ATOM     51  CA  ILE    51      57.755   8.344  18.924  1.00  0.00              
ATOM     52  CA  GLY    52      60.524   7.562  21.299  1.00  0.00              
ATOM     53  CA  TYR    53      60.631   9.252  24.724  1.00  0.00              
ATOM     54  CA  TYR    54      63.514   8.693  27.162  1.00  0.00              
ATOM     55  CA  ASP    55      62.959   9.725  30.788  1.00  0.00              
ATOM     56  CA  GLN    56      66.268  10.938  32.289  1.00  0.00              
ATOM     57  CA  GLU    57      65.075  13.125  35.121  1.00  0.00              
ATOM     58  CA  LYS    58      62.138  14.913  33.497  1.00  0.00              
ATOM     59  CA  LYS    59      63.271  18.443  34.525  1.00  0.00              
ATOM     60  CA  GLU    60      62.745  20.707  31.688  1.00  0.00              
ATOM     61  CA  TYR    61      59.105  20.643  30.754  1.00  0.00              
ATOM     62  CA  VAL    62      59.146  22.315  27.342  1.00  0.00              
ATOM     63  CA  LYS    63      55.623  23.234  26.484  1.00  0.00              
ATOM     64  CA  LYS    64      54.335  22.439  23.049  1.00  0.00              
ATOM     65  CA  GLU    65      51.431  24.339  21.610  1.00  0.00              
ATOM     66  CA  LEU    66      49.390  22.637  18.931  1.00  0.00              
ATOM     67  CA  MET    67      46.788  24.694  17.216  1.00  0.00              
ATOM     68  CA  GLU    68      44.547  23.093  14.792  1.00  0.00              
ATOM     69  CA  PRO    69      42.680  20.006  14.155  1.00  0.00              
ATOM     70  CA  LEU    70      45.437  17.464  13.603  1.00  0.00              
ATOM     71  CA  GLU    71      44.778  14.099  12.051  1.00  0.00              
ATOM     72  CA  ILE    72      46.873  11.364  13.272  1.00  0.00              
ATOM     73  CA  LEU    73      45.923   7.891  12.640  1.00  0.00              
ATOM     74  CA  SER    74      47.960   5.437  14.779  1.00  0.00              
ATOM     75  CA  LEU    75      50.821   6.816  16.846  1.00  0.00              
ATOM     76  CA  SER    76      52.964   4.675  18.885  1.00  0.00              
ATOM     77  CA  GLY    77      54.688   6.158  21.812  1.00  0.00              
ATOM     78  CA  ASN    78      57.421   4.453  23.608  1.00  0.00              
ATOM     79  CA  VAL    79      58.354   5.547  26.967  1.00  0.00              
ATOM     80  CA  SER    80      61.454   4.310  28.468  1.00  0.00              
ATOM     81  CA  MET    81      62.537   5.060  32.014  1.00  0.00              
ATOM     82  CA  LYS    82      66.293   5.854  32.064  1.00  0.00              
ATOM     83  CA  ASP    83      67.669   4.200  35.017  1.00  0.00              
ATOM     84  CA  SER    84      65.434   1.344  36.019  1.00  0.00              
ATOM     85  CA  LYS    85      64.411  -0.103  32.604  1.00  0.00              
ATOM     86  CA  PRO    86      60.670  -0.340  32.890  1.00  0.00              
ATOM     87  CA  PHE    87      59.295   0.250  29.413  1.00  0.00              
ATOM     88  CA  CYS    88      55.947   1.914  28.893  1.00  0.00              
ATOM     89  CA  HIS    89      54.030   1.534  25.608  1.00  0.00              
ATOM     90  CA  ILE    90      51.464   4.092  24.762  1.00  0.00              
ATOM     91  CA  HIS    91      49.198   3.888  21.834  1.00  0.00              
ATOM     92  CA  VAL    92      47.874   7.267  20.545  1.00  0.00              
ATOM     93  CA  LEU    93      45.012   7.672  18.165  1.00  0.00              
ATOM     94  CA  LEU    94      43.902  11.196  17.162  1.00  0.00              
ATOM     95  CA  GLY    95      40.887  11.592  14.973  1.00  0.00              
ATOM     96  CA  LYS    96      40.398  14.465  12.540  1.00  0.00              
ATOM     97  CA  ASP    97      37.592  15.897  14.746  1.00  0.00              
ATOM     98  CA  GLY    98      39.949  16.163  17.653  1.00  0.00              
ATOM     99  CA  GLU    99      38.841  13.190  19.676  1.00  0.00              
ATOM    100  CA  VAL   100      41.720  11.658  21.326  1.00  0.00              
ATOM    101  CA  TYR   101      41.921   8.110  22.016  1.00  0.00              
ATOM    102  CA  GLY   102      44.665   7.136  24.510  1.00  0.00              
ATOM    103  CA  GLY   103      45.465   3.574  25.284  1.00  0.00              
ATOM    104  CA  HIS   104      48.321   2.529  27.404  1.00  0.00              
ATOM    105  CA  LEU   105      47.712   4.135  30.736  1.00  0.00              
ATOM    106  CA  PHE   106      51.419   4.393  31.753  1.00  0.00              
ATOM    107  CA  SER   107      52.288   5.963  28.430  1.00  0.00              
ATOM    108  CA  ALA   108      49.438   8.514  28.438  1.00  0.00              
ATOM    109  CA  GLU   109      50.175   9.549  31.987  1.00  0.00              
ATOM    110  CA  VAL   110      54.005   9.825  31.988  1.00  0.00              
ATOM    111  CA  PHE   111      54.851  11.328  28.650  1.00  0.00              
ATOM    112  CA  ALA   112      52.186  14.067  28.501  1.00  0.00              
ATOM    113  CA  CYS   113      52.950  15.434  31.965  1.00  0.00              
ATOM    114  CA  GLU   114      56.715  15.613  31.297  1.00  0.00              
ATOM    115  CA  VAL   115      56.191  17.203  27.872  1.00  0.00              
ATOM    116  CA  PHE   116      53.263  19.602  28.264  1.00  0.00              
ATOM    117  CA  VAL   117      51.050  19.835  25.220  1.00  0.00              
ATOM    118  CA  LEU   118      48.586  22.582  24.602  1.00  0.00              
ATOM    119  CA  PRO   119      45.794  22.154  22.011  1.00  0.00              
ATOM    120  CA  LEU   120      44.282  25.255  20.556  1.00  0.00              
ATOM    121  CA  SER   121      40.893  24.138  19.205  1.00  0.00              
ATOM    122  CA  GLY   122      38.906  24.701  22.417  1.00  0.00              
ATOM    123  CA  GLU   123      41.290  22.806  24.728  1.00  0.00              
ATOM    124  CA  ALA   124      43.465  24.201  27.476  1.00  0.00              
ATOM    125  CA  PRO   125      46.465  22.049  28.122  1.00  0.00              
ATOM    126  CA  GLU   126      46.366  21.656  31.886  1.00  0.00              
ATOM    127  CA  ARG   127      42.635  20.774  31.405  1.00  0.00              
ATOM    128  CA  ALA   128      43.046  18.200  28.685  1.00  0.00              
ATOM    129  CA  PHE   129      46.162  16.433  30.074  1.00  0.00              
ATOM    130  CA  ASP   130      45.621  16.581  33.799  1.00  0.00              
ATOM    131  CA  GLU   131      42.156  15.153  33.794  1.00  0.00              
ATOM    132  CA  GLN   132      42.547  12.649  36.571  1.00  0.00              
ATOM    133  CA  THR   133      45.386  10.720  34.965  1.00  0.00              
ATOM    134  CA  GLY   134      43.912  11.176  31.486  1.00  0.00              
ATOM    135  CA  LEU   135      44.536   7.819  29.878  1.00  0.00              
ATOM    136  CA  PHE   136      41.600   7.697  27.423  1.00  0.00              
ATOM    137  CA  LEU   137      40.742   4.178  26.300  1.00  0.00              
ATOM    138  CA  TRP   138      39.239   3.943  22.770  1.00  0.00              
ATOM    139  CA  LEU   139      37.028   0.966  22.111  1.00  0.00              
ATOM    140  CA  GLU   140      39.024  -0.888  19.439  1.00  0.00              
ATOM    141  CA  HIS   141      42.274  -0.353  21.402  1.00  0.00              
ATOM    142  CA  HIS   142      41.164  -1.530  24.842  1.00  0.00              
ATOM    143  CA  HIS   143      39.178  -4.424  23.369  1.00  0.00              
ATOM    144  CA  HIS   144      41.057  -5.935  20.690  1.00  0.00              
ATOM    145  CA  HIS   145      37.304  -5.775  22.613  1.00  0.00              
ATOM    146  CA  HIS   146      36.466  -2.248  24.776  1.00  0.00              
TER                                                                             
END
