
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  146 (  146),  selected  140 , name T0312TS599_2
# Molecule2: number of CA atoms  140 ( 1114),  selected  140 , name T0312.pdb
# PARAMETERS: T0312TS599_2.T0312.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    46        61 - 106         4.91    19.87
  LONGEST_CONTINUOUS_SEGMENT:    46        62 - 107         4.91    19.80
  LCS_AVERAGE:     24.46

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    19        19 - 37          1.87    22.43
  LONGEST_CONTINUOUS_SEGMENT:    19        20 - 38          1.94    22.35
  LONGEST_CONTINUOUS_SEGMENT:    19        21 - 39          1.96    22.27
  LCS_AVERAGE:      8.36

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    17        21 - 37          0.97    22.64
  LCS_AVERAGE:      5.31

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  140
LCS_GDT     M       1     M       1      7    8   11     5    5    7    7    8    9    9   12   18   22   25   30   35   39   42   44   46   49   51   55 
LCS_GDT     K       2     K       2      7    8   11     5    6    7    7    8    9   10   10   14   16   19   23   27   27   32   33   36   41   43   50 
LCS_GDT     V       3     V       3      7    8   11     5    6    7    7    8    9    9    9   10   12   12   14   26   27   28   33   36   41   43   50 
LCS_GDT     F       4     F       4      7    8   11     5    6    7    7    7    9    9    9   11   12   12   14   15   22   24   25   27   32   37   41 
LCS_GDT     E       5     E       5      7    8   14     5    6    7    7    8    9    9   10   14   17   19   21   22   24   27   28   34   39   47   50 
LCS_GDT     F       6     F       6      7    8   41     3    6    7    7    8    9    9   12   13   17   19   21   27   33   37   42   47   50   53   57 
LCS_GDT     E       7     E       7      7    8   42     3    6    7    8    9   10   10   12   16   23   33   37   41   43   47   49   51   53   54   57 
LCS_GDT     V       8     V       8      4   13   42     3    3    6   10   11   14   14   16   21   24   28   34   41   43   47   49   51   53   54   57 
LCS_GDT     G       9     G       9      5   13   42     3    3    5   10   12   12   17   22   27   28   35   39   40   43   47   49   51   53   54   57 
LCS_GDT     K      10     K      10      7   13   42     4    7    9   11   16   21   23   26   31   36   38   40   40   43   47   49   51   53   54   57 
LCS_GDT     G      11     G      11      7   13   42     4    7    9   11   16   21   23   26   31   36   38   40   41   43   47   49   51   53   60   64 
LCS_GDT     F      12     F      12      7   13   42     4    7    9   11   16   21   23   26   31   36   38   40   41   43   47   49   54   58   62   67 
LCS_GDT     L      13     L      13      7   13   42     4    7    9   11   16   21   23   27   31   36   38   40   41   44   49   53   57   60   62   67 
LCS_GDT     L      14     L      14      7   13   42     4    7    9   11   16   21   23   26   31   36   38   40   41   43   47   49   55   57   61   67 
LCS_GDT     R      15     R      15      7   13   42     3    7    9   11   16   21   23   26   31   36   38   40   41   43   47   49   51   53   60   62 
LCS_GDT     L      16     L      16      7   13   42     3    7    9   11   15   21   23   26   31   36   38   40   41   43   47   49   51   53   54   57 
LCS_GDT     D      17     D      17      7   13   42     5    6    7   11   13   17   19   23   27   31   38   40   41   43   47   49   51   53   54   57 
LCS_GDT     Y      18     Y      18      7   13   42     5    6    9   11   13   18   22   25   28   36   38   40   41   43   47   49   51   53   54   57 
LCS_GDT     G      19     G      19      7   19   42     5    6    9   11   16   21   23   26   31   36   38   40   41   43   47   49   51   53   54   57 
LCS_GDT     K      20     K      20      6   19   42     5    6    7   11   16   21   23   26   31   36   38   40   41   43   47   49   51   53   54   57 
LCS_GDT     D      21     D      21     17   19   42    13   15   16   16   17   19   23   26   31   36   38   40   41   43   47   49   51   53   54   57 
LCS_GDT     L      22     L      22     17   19   42    14   15   16   16   17   18   20   23   31   36   38   40   41   43   47   49   51   53   54   57 
LCS_GDT     V      23     V      23     17   19   42    14   15   16   16   17   18   23   26   31   36   38   40   41   43   47   49   51   53   54   57 
LCS_GDT     R      24     R      24     17   19   42    14   15   16   16   17   21   23   26   31   36   38   40   41   43   47   49   51   53   54   57 
LCS_GDT     Q      25     Q      25     17   19   42    14   15   16   16   17   21   23   26   31   36   38   40   41   43   47   49   51   53   54   57 
LCS_GDT     I      26     I      26     17   19   42    14   15   16   16   17   21   23   26   31   36   38   40   41   43   47   49   51   53   54   57 
LCS_GDT     E      27     E      27     17   19   42    14   15   16   16   17   21   23   26   31   36   38   40   41   43   47   49   51   53   54   57 
LCS_GDT     E      28     E      28     17   19   42    14   15   16   16   17   21   23   26   31   36   38   40   41   43   47   49   51   53   54   57 
LCS_GDT     F      29     F      29     17   19   42    14   15   16   16   17   21   23   26   31   36   38   40   41   43   47   49   51   53   54   57 
LCS_GDT     L      30     L      30     17   19   42    14   15   16   16   17   21   23   26   31   36   38   40   41   43   47   49   51   53   54   57 
LCS_GDT     E      31     E      31     17   19   42    14   15   16   16   17   21   23   26   31   36   38   40   41   43   47   49   51   53   54   57 
LCS_GDT     E      32     E      32     17   19   42    14   15   16   16   17   18   20   26   31   36   38   40   41   43   47   49   51   53   54   57 
LCS_GDT     K      33     K      33     17   19   42    14   15   16   16   17   21   23   26   31   36   38   40   41   43   47   49   51   53   54   57 
LCS_GDT     G      34     G      34     17   19   42    14   15   16   16   17   21   23   26   31   36   38   40   41   43   47   49   51   53   54   57 
LCS_GDT     I      35     I      35     17   19   42    14   15   16   16   17   21   23   26   31   36   38   40   41   43   47   49   51   53   54   57 
LCS_GDT     H      36     H      36     17   19   42     3   14   16   16   17   18   22   26   31   36   38   40   41   43   47   49   51   53   54   57 
LCS_GDT     A      37     A      37     17   19   42     3    5    9   12   16   18   20   25   31   36   38   40   41   43   47   49   51   53   54   57 
LCS_GDT     A      38     A      38      7   19   42     4    6    7   11   13   16   20   23   30   36   38   40   41   43   47   49   51   53   54   57 
LCS_GDT     H      39     H      39      7   19   42     4    6    7   12   14   18   20   23   30   36   38   40   41   43   47   53   55   58   61   67 
LCS_GDT     I      40     I      40      7   17   42     4    6    7   12   14   18   20   23   30   36   38   40   44   47   51   53   57   60   62   67 
LCS_GDT     S      41     S      41      7   17   42     4    6    7   12   15   18   20   23   30   36   39   40   44   47   51   53   57   60   62   67 
LCS_GDT     A      42     A      42      7   16   42     3    6    7    8   14   17   20   23   31   36   38   40   41   43   47   49   55   60   62   64 
LCS_GDT     I      43     I      43      7    9   42     3    6    7    9   14   18   20   26   31   36   38   40   41   43   47   49   51   53   54   57 
LCS_GDT     G      44     G      44      7    9   42     3    6    7    8    9   10   19   26   31   36   38   40   41   43   47   49   51   53   54   57 
LCS_GDT     A      45     A      45      4   10   42     3    3    5    6    7   10   12   25   31   36   38   40   41   43   47   49   51   53   54   57 
LCS_GDT     V      46     V      46      5   11   42     3    5    8   10   10   11   12   12   15   16   22   30   38   43   47   49   51   53   54   57 
LCS_GDT     R      47     R      47      8   11   42     3    5    9   10   11   11   12   14   15   16   23   30   38   43   47   49   51   53   54   57 
LCS_GDT     S      48     S      48      8   11   42     3    5    9   10   11   11   13   14   15   16   16   19   23   43   47   49   49   51   53   57 
LCS_GDT     A      49     A      49      8   11   42     3    5    9   10   11   11   13   14   15   18   25   34   38   43   47   49   49   51   53   57 
LCS_GDT     V      50     V      50      8   11   19     3    5    9   10   11   11   13   14   15   16   16   17   23   24   35   41   44   49   51   54 
LCS_GDT     I      51     I      51      8   11   19     3    5    9   10   17   17   18   19   20   22   25   29   34   39   44   49   49   51   53   57 
LCS_GDT     G      52     G      52      8   11   19     3    5    8   10   11   11   13   14   15   16   16   20   25   26   30   32   38   44   50   54 
LCS_GDT     Y      53     Y      53      8   11   19     3    5    9   10   11   11   13   14   16   17   20   23   29   35   40   44   45   48   49   52 
LCS_GDT     Y      54     Y      54      8   11   19     3    5    9   10   11   11   13   14   15   17   19   22   26   27   33   38   42   46   49   51 
LCS_GDT     D      55     D      55      5   11   19     3    5    9   10   11   11   13   14   15   17   17   22   26   27   30   34   40   42   46   49 
LCS_GDT     Q      56     Q      56      5   11   19     3    5    9   10   11   12   13   14   16   18   21   22   24   27   28   29   33   35   39   40 
LCS_GDT     E      57     E      57      3   10   19     3    3    5    7    9   12   13   14   15   16   21   22   23   26   26   28   33   35   39   40 
LCS_GDT     K      58     K      58      3    7   19     3    3    4    4    7   10   13   14   15   16   18   21   23   26   26   28   33   35   39   40 
LCS_GDT     K      59     K      59      4    6   23     3    4    4    5    8   12   13   14   16   18   21   22   26   30   34   38   41   45   47   51 
LCS_GDT     E      60     E      60      4    8   41     3    4    5    5    9   12   13   14   16   18   23   28   32   37   42   44   47   50   52   57 
LCS_GDT     Y      61     Y      61      6   10   46     3    4    7    7    9   12   14   21   24   32   38   40   42   46   49   53   56   58   61   67 
LCS_GDT     V      62     V      62      7   11   46     3    5    7    8   12   15   20   24   28   32   37   42   46   48   50   53   56   58   62   67 
LCS_GDT     K      63     K      63      7   14   46     4    6    8   10   14   18   22   24   28   34   41   45   46   48   51   53   57   60   62   67 
LCS_GDT     K      64     K      64      7   14   46     4    6    8   11   14   18   22   24   29   35   41   45   46   48   51   53   57   60   62   67 
LCS_GDT     E      65     E      65      7   14   46     4    6    8   11   14   18   22   24   29   35   41   45   46   48   51   53   57   60   62   67 
LCS_GDT     L      66     L      66      7   14   46     4    6    8   11   14   18   22   24   28   34   41   45   46   48   51   53   57   60   62   67 
LCS_GDT     M      67     M      67      7   14   46     3    6    8   11   14   18   22   24   28   34   41   45   46   48   51   53   57   60   62   67 
LCS_GDT     E      68     E      68      7   14   46     3    6    8   11   14   18   22   24   29   35   41   45   46   48   51   53   57   60   62   67 
LCS_GDT     P      69     P      69      7   14   46     3    6    8   11   14   18   22   24   28   33   41   45   46   48   51   53   57   60   62   67 
LCS_GDT     L      70     L      70      7   14   46     3    5    8   11   15   22   27   32   33   36   41   45   46   48   51   53   57   60   62   67 
LCS_GDT     E      71     E      71      7   14   46     3    5    8   11   15   22   27   32   33   36   41   45   46   48   51   53   57   60   62   67 
LCS_GDT     I      72     I      72      7   14   46     3    6    8   11   15   22   27   32   33   36   41   45   46   48   51   53   57   60   62   67 
LCS_GDT     L      73     L      73      7   14   46     4    5    8   11   15   19   26   32   33   36   41   45   46   48   51   53   57   60   62   67 
LCS_GDT     S      74     S      74      7   14   46     4    5    8   11   14   18   22   25   31   36   41   45   46   48   51   53   57   60   62   67 
LCS_GDT     L      75     L      75      6   14   46     4    5    7   10   15   22   27   32   33   36   41   45   46   48   51   53   57   60   62   67 
LCS_GDT     S      76     S      76      6   14   46     4    5    7   11   14   19   22   32   33   36   41   45   46   48   51   53   57   60   62   67 
LCS_GDT     G      77     G      77      6   14   46     3    5    7   11   15   22   27   32   33   36   41   45   46   48   51   53   57   60   62   67 
LCS_GDT     N      78     N      78      6   11   46     3    5    7   10   15   22   27   32   33   36   41   45   46   48   51   53   57   60   62   67 
LCS_GDT     V      79     V      79      5   11   46     3    5    6    9   15   21   27   32   33   36   41   45   46   48   51   53   57   60   62   67 
LCS_GDT     S      80     S      80      4   11   46     3    4    7   10   15   22   27   32   33   36   41   45   46   48   51   53   57   60   62   67 
LCS_GDT     M      81     M      81      4   11   46     3    3    7   10   15   21   27   32   33   36   41   45   46   48   51   53   57   60   62   67 
LCS_GDT     K      82     K      82      4   11   46     3    4    4    7   10   11   11   13   22   29   34   36   38   46   49   51   55   58   61   64 
LCS_GDT     D      83     D      83      4   11   46     3    4    5    7   10   17   22   26   32   36   37   43   45   47   51   53   57   59   62   67 
LCS_GDT     S      84     S      84      9   14   46     3    6   10   11   15   22   25   30   33   36   41   45   46   48   51   53   57   59   62   67 
LCS_GDT     K      85     K      85      9   14   46     5    8   10   11   14   21   27   32   33   36   41   45   46   48   51   53   57   60   62   67 
LCS_GDT     P      86     P      86      9   14   46     5    8   10   10   15   21   27   32   33   36   41   45   46   48   51   53   57   60   62   67 
LCS_GDT     F      87     F      87      9   14   46     5    8   10   11   15   22   27   32   33   36   41   45   46   48   51   53   57   60   62   67 
LCS_GDT     C      88     C      88      9   14   46     5    8   10   11   15   22   27   32   33   36   41   45   46   48   51   53   57   60   62   67 
LCS_GDT     H      89     H      89      9   14   46     5    8    8   10   14   18   21   26   31   34   41   45   46   48   51   53   57   59   62   67 
LCS_GDT     I      90     I      90      9   14   46     5    8   10   11   15   22   25   32   33   36   41   45   46   48   51   53   57   60   62   67 
LCS_GDT     H      91     H      91      9   14   46     5    8   10   10   14   18   21   24   29   34   36   40   45   48   51   53   56   59   62   67 
LCS_GDT     V      92     V      92      9   14   46     4    8   10   11   15   22   27   32   33   36   41   45   46   48   51   53   57   60   62   67 
LCS_GDT     L      93     L      93      7   14   46     4    6   10   10   14   18   25   28   32   36   41   45   46   48   51   53   57   60   62   67 
LCS_GDT     L      94     L      94      7   14   46     4    6    7   11   15   22   27   32   33   36   41   45   46   48   51   53   57   60   62   67 
LCS_GDT     G      95     G      95      7   14   46     4    5    7   11   15   22   27   32   33   36   41   45   46   48   51   53   57   60   62   67 
LCS_GDT     K      96     K      96      4   14   46     3    5    7   11   15   22   27   32   33   36   41   45   46   48   51   53   57   60   62   67 
LCS_GDT     D      97     D      97      5   14   46     3    4   10   11   15   22   27   32   33   36   41   45   46   48   51   53   57   60   62   67 
LCS_GDT     G      98     G      98      6   13   46     3    4    7   10   15   22   27   32   33   36   41   45   46   48   51   53   57   60   62   67 
LCS_GDT     E      99     E      99      6   13   46     3    5    8   10   15   22   27   32   33   36   41   45   46   48   51   53   57   60   62   67 
LCS_GDT     V     100     V     100      6   13   46     3    5    8   11   15   22   27   32   33   36   41   45   46   48   51   53   57   60   62   67 
LCS_GDT     Y     101     Y     101      6   13   46     3    5    8   11   15   22   27   32   33   36   41   45   46   48   51   53   57   60   62   67 
LCS_GDT     G     102     G     102      6   13   46     3    5    8   11   15   22   25   32   33   36   38   45   46   48   51   53   57   60   62   67 
LCS_GDT     G     103     G     103      6   13   46     3    5    8   11   15   19   25   28   32   34   37   39   42   45   49   53   57   59   62   67 
LCS_GDT     H     104     H     104      6   11   46     3    5    7   10   15   21   25   28   32   34   37   40   43   47   51   53   57   60   62   67 
LCS_GDT     L     105     L     105      6    8   46     3    5    7   10   15   22   27   32   33   36   41   45   46   48   51   53   57   60   62   67 
LCS_GDT     F     106     F     106      3    4   46     3    4    4    7   10   17   19   24   31   35   41   45   46   48   51   53   57   60   62   67 
LCS_GDT     S     107     S     107      3    4   46     3    4    4    6    9   10   14   16   21   29   33   38   41   47   50   53   57   60   62   67 
LCS_GDT     A     108     A     108      3    4   43     3    3    3    4    5    8    9   14   17   21   25   29   33   38   41   44   54   60   62   63 
LCS_GDT     E     109     E     109      3    3   18     3    3    3    3    4    6    8   11   12   16   19   21   22   24   30   32   38   41   47   53 
LCS_GDT     V     110     V     110      4    4   18     3    3    4    4    4    6    8   11   14   17   19   21   23   24   36   39   45   50   51   53 
LCS_GDT     F     111     F     111      4    4   18     3    3    4    4    4    5    6    8   13   17   19   21   23   24   29   32   36   45   48   53 
LCS_GDT     A     112     A     112      4    4   18     3    3    4    4    4    5    6   10   14   17   19   21   22   24   28   32   36   40   42   47 
LCS_GDT     C     113     C     113      4    4   18     3    3    4    4    4    5    7   10   14   17   19   21   23   24   36   39   43   50   51   53 
LCS_GDT     E     114     E     114      3    3   18     3    3    3    4    6    7    9   12   14   17   21   26   28   29   33   36   37   40   43   44 
LCS_GDT     V     115     V     115      5    7   18     5    5    6    7    7    8   10   12   13   17   19   26   28   29   33   36   37   38   43   43 
LCS_GDT     F     116     F     116      5    7   15     5    5    6    7    7    9   10   12   14   16   22   26   28   32   34   36   40   42   45   47 
LCS_GDT     V     117     V     117      5    7   15     5    5    6    7    7    9   12   15   18   21   25   29   31   33   38   42   48   49   54   59 
LCS_GDT     L     118     L     118      5    7   15     5    5    6    7    7   10   12   15   18   21   25   29   34   36   42   46   55   57   62   64 
LCS_GDT     P     119     P     119      5    7   15     5    5    6    7    7    9   11   16   19   25   29   30   35   43   45   50   55   60   62   64 
LCS_GDT     L     120     L     120      5    7   15     4    4    6    7    8   11   12   17   20   26   28   35   37   43   49   53   57   60   62   67 
LCS_GDT     S     121     S     121      5    7   15     4    4    6    7    8   11   13   17   20   23   27   31   37   43   45   51   57   60   62   67 
LCS_GDT     G     122     G     122      5    7   15     4    5    5    7    8   11   13   17   20   23   27   31   37   43   47   53   57   60   62   67 
LCS_GDT     E     123     E     123      5    7   13     4    5    5    7    8   11   13   17   20   23   26   31   35   43   49   53   57   60   62   67 
LCS_GDT     A     124     A     124      5    7   13     4    5    5    7    8   11   13   17   20   23   26   30   36   43   49   53   57   60   62   67 
LCS_GDT     P     125     P     125      5    7   12     4    5    5    7    8   11   13   17   21   27   31   38   43   47   51   53   57   60   62   67 
LCS_GDT     E     126     E     126      5    7   12     4    5    5    7    8   11   13   17   20   23   28   34   42   46   50   53   57   60   62   67 
LCS_GDT     R     127     R     127      3    4   12     3    3    4    4    4    5    6   11   16   16   20   30   35   41   47   53   56   60   62   67 
LCS_GDT     A     128     A     128      7    7   12     3    3    6    8    8   11   15   18   22   22   29   32   36   41   50   53   55   58   61   67 
LCS_GDT     F     129     F     129      7    7   12     3    6    7    8    9   10   15   18   23   26   31   36   43   46   50   53   56   58   62   67 
LCS_GDT     D     130     D     130      7    7   12     4    6    7    8   10   13   18   24   28   32   35   43   46   48   51   53   57   60   62   67 
LCS_GDT     E     131     E     131      7    7   12     4    6    7   10   12   19   27   32   33   36   41   45   46   48   51   53   57   60   62   67 
LCS_GDT     Q     132     Q     132      7    7   12     4    6    7   10   15   21   27   32   33   36   41   45   46   48   51   53   57   60   62   67 
LCS_GDT     T     133     T     133      7    8   12     4    6    7   11   15   21   27   32   33   36   41   45   46   48   51   53   57   60   62   67 
LCS_GDT     G     134     G     134      7    8   12     4    6    7   10   12   17   27   32   33   36   41   45   46   48   51   53   57   60   62   67 
LCS_GDT     L     135     L     135      5    8   12     3    5    7   11   15   21   27   32   33   36   41   45   46   48   51   53   57   60   62   67 
LCS_GDT     F     136     F     136      5    8   12     3    5    5    7    7   17   22   24   28   33   39   45   46   48   51   53   57   60   62   67 
LCS_GDT     L     137     L     137      5    8   12     3    5    5    7    7    8    8   11   13   18   23   28   34   40   45   50   51   57   60   64 
LCS_GDT     W     138     W     138      5    8   12     3    5    5    7    7    8    8   11   13   16   18   23   25   27   28   32   36   40   43   45 
LCS_GDT     L     139     L     139      4    8   12     3    3    5    7    7    8    8   11   13   16   18   23   25   27   27   32   33   36   40   41 
LCS_GDT     E     140     E     140      4    8   12     3    3    5    5    7    8    8   11   13   16   18   19   24   27   27   30   32   33   36   41 
LCS_AVERAGE  LCS_A:  12.71  (   5.31    8.36   24.46 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     14     15     16     16     17     22     27     32     33     36     41     45     46     48     51     53     57     60     62     67 
GDT PERCENT_CA  10.00  10.71  11.43  11.43  12.14  15.71  19.29  22.86  23.57  25.71  29.29  32.14  32.86  34.29  36.43  37.86  40.71  42.86  44.29  47.86
GDT RMS_LOCAL    0.34   0.38   0.50   0.50   0.83   2.27   2.74   2.97   3.03   3.27   3.86   4.10   4.20   4.33   4.69   4.91   5.65   6.24   6.15   6.64
GDT RMS_ALL_CA  22.63  22.64  22.75  22.75  23.10  19.58  19.28  19.50  19.47  19.51  19.68  19.67  19.66  19.75  19.27  19.17  18.48  18.21  18.37  17.93

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         21.486
LGA    K       2      K       2         21.648
LGA    V       3      V       3         21.867
LGA    F       4      F       4         23.498
LGA    E       5      E       5         24.689
LGA    F       6      F       6         25.943
LGA    E       7      E       7         27.477
LGA    V       8      V       8         26.338
LGA    G       9      G       9         25.332
LGA    K      10      K      10         20.503
LGA    G      11      G      11         14.745
LGA    F      12      F      12         15.443
LGA    L      13      L      13         13.642
LGA    L      14      L      14         19.644
LGA    R      15      R      15         23.008
LGA    L      16      L      16         26.572
LGA    D      17      D      17         32.299
LGA    Y      18      Y      18         35.615
LGA    G      19      G      19         38.632
LGA    K      20      K      20         35.728
LGA    D      21      D      21         32.141
LGA    L      22      L      22         26.251
LGA    V      23      V      23         23.474
LGA    R      24      R      24         30.378
LGA    Q      25      Q      25         31.508
LGA    I      26      I      26         25.773
LGA    E      27      E      27         28.875
LGA    E      28      E      28         35.312
LGA    F      29      F      29         32.738
LGA    L      30      L      30         30.679
LGA    E      31      E      31         37.346
LGA    E      32      E      32         40.707
LGA    K      33      K      33         37.384
LGA    G      34      G      34         38.673
LGA    I      35      I      35         31.723
LGA    H      36      H      36         30.576
LGA    A      37      A      37         23.932
LGA    A      38      A      38         17.702
LGA    H      39      H      39         10.245
LGA    I      40      I      40          9.213
LGA    S      41      S      41          8.110
LGA    A      42      A      42         14.654
LGA    I      43      I      43         20.271
LGA    G      44      G      44         26.713
LGA    A      45      A      45         31.461
LGA    V      46      V      46         33.196
LGA    R      47      R      47         34.565
LGA    S      48      S      48         30.310
LGA    A      49      A      49         24.485
LGA    V      50      V      50         21.849
LGA    I      51      I      51         17.140
LGA    G      52      G      52         17.730
LGA    Y      53      Y      53         16.405
LGA    Y      54      Y      54         19.654
LGA    D      55      D      55         23.504
LGA    Q      56      Q      56         24.922
LGA    E      57      E      57         25.732
LGA    K      58      K      58         24.347
LGA    K      59      K      59         20.612
LGA    E      60      E      60         16.534
LGA    Y      61      Y      61         11.255
LGA    V      62      V      62         10.294
LGA    K      63      K      63          8.307
LGA    K      64      K      64          8.445
LGA    E      65      E      65          8.491
LGA    L      66      L      66          8.690
LGA    M      67      M      67          9.124
LGA    E      68      E      68          8.022
LGA    P      69      P      69          8.548
LGA    L      70      L      70          3.820
LGA    E      71      E      71          2.438
LGA    I      72      I      72          0.791
LGA    L      73      L      73          3.318
LGA    S      74      S      74          4.723
LGA    L      75      L      75          2.687
LGA    S      76      S      76          3.950
LGA    G      77      G      77          2.969
LGA    N      78      N      78          2.645
LGA    V      79      V      79          3.801
LGA    S      80      S      80          2.239
LGA    M      81      M      81          2.525
LGA    K      82      K      82          7.510
LGA    D      83      D      83          5.765
LGA    S      84      S      84          4.093
LGA    K      85      K      85          3.166
LGA    P      86      P      86          2.631
LGA    F      87      F      87          3.063
LGA    C      88      C      88          1.659
LGA    H      89      H      89          5.814
LGA    I      90      I      90          3.607
LGA    H      91      H      91          6.499
LGA    V      92      V      92          3.149
LGA    L      93      L      93          4.645
LGA    L      94      L      94          3.215
LGA    G      95      G      95          2.856
LGA    K      96      K      96          3.341
LGA    D      97      D      97          3.348
LGA    G      98      G      98          2.899
LGA    E      99      E      99          2.756
LGA    V     100      V     100          2.134
LGA    Y     101      Y     101          2.248
LGA    G     102      G     102          3.887
LGA    G     103      G     103          7.046
LGA    H     104      H     104          6.280
LGA    L     105      L     105          1.650
LGA    F     106      F     106          5.875
LGA    S     107      S     107          9.870
LGA    A     108      A     108         12.401
LGA    E     109      E     109         16.591
LGA    V     110      V     110         19.996
LGA    F     111      F     111         25.435
LGA    A     112      A     112         26.166
LGA    C     113      C     113         22.767
LGA    E     114      E     114         25.326
LGA    V     115      V     115         25.277
LGA    F     116      F     116         23.819
LGA    V     117      V     117         20.877
LGA    L     118      L     118         17.974
LGA    P     119      P     119         17.959
LGA    L     120      L     120         14.659
LGA    S     121      S     121         17.982
LGA    G     122      G     122         16.835
LGA    E     123      E     123         15.493
LGA    A     124      A     124         14.584
LGA    P     125      P     125         10.092
LGA    E     126      E     126         12.007
LGA    R     127      R     127         13.521
LGA    A     128      A     128         13.407
LGA    F     129      F     129         11.502
LGA    D     130      D     130          7.950
LGA    E     131      E     131          3.471
LGA    Q     132      Q     132          2.549
LGA    T     133      T     133          3.279
LGA    G     134      G     134          3.989
LGA    L     135      L     135          3.744
LGA    F     136      F     136          7.309
LGA    L     137      L     137         12.758
LGA    W     138      W     138         18.945
LGA    L     139      L     139         25.231
LGA    E     140      E     140         28.825

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  146  140    4.0     32    2.97    20.714    17.686     1.043

LGA_LOCAL      RMSD =  2.969  Number of atoms =   32  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 19.511  Number of atoms =  140 
Std_ALL_ATOMS  RMSD = 16.964  (standard rmsd on all 140 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.699283 * X  +  -0.451692 * Y  +  -0.554056 * Z  +  52.708004
  Y_new =  -0.645889 * X  +   0.731362 * Y  +   0.218947 * Z  +   4.131774
  Z_new =   0.306318 * X  +   0.510964 * Y  +  -0.803171 * Z  +  24.102238 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.574992   -0.566601  [ DEG:   147.5362    -32.4638 ]
  Theta =  -0.311323   -2.830270  [ DEG:   -17.8375   -162.1625 ]
  Phi   =  -2.395867    0.745726  [ DEG:  -137.2731     42.7269 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0312TS599_2                                  
REMARK     2: T0312.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0312TS599_2.T0312.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  146  140   4.0   32   2.97  17.686    16.96
REMARK  ---------------------------------------------------------- 
MOLECULE T0312TS599_2
PFRMAT TS                                                                       
TARGET T0312                                                                    
MODEL  2                                                                        
PARENT N/A                                                                      
ATOM      1  CA  MET     1      59.166  17.144  35.680  1.00  0.00              
ATOM      2  CA  LYS     2      54.992  17.312  35.212  1.00  0.00              
ATOM      3  CA  VAL     3      53.410  19.915  33.176  1.00  0.00              
ATOM      4  CA  PHE     4      49.925  20.600  33.538  1.00  0.00              
ATOM      5  CA  GLU     5      48.303  22.820  30.969  1.00  0.00              
ATOM      6  CA  PHE     6      44.610  22.718  31.474  1.00  0.00              
ATOM      7  CA  GLU     7      42.451  25.135  29.435  1.00  0.00              
ATOM      8  CA  VAL     8      39.942  22.786  27.784  1.00  0.00              
ATOM      9  CA  GLY     9      41.678  21.222  24.767  1.00  0.00              
ATOM     10  CA  LYS    10      45.184  22.316  25.764  1.00  0.00              
ATOM     11  CA  GLY    11      47.727  19.580  26.182  1.00  0.00              
ATOM     12  CA  PHE    12      48.988  18.463  29.549  1.00  0.00              
ATOM     13  CA  LEU    13      52.066  16.391  29.915  1.00  0.00              
ATOM     14  CA  LEU    14      52.318  13.791  32.675  1.00  0.00              
ATOM     15  CA  ARG    15      55.577  12.097  33.467  1.00  0.00              
ATOM     16  CA  LEU    16      55.484   8.727  35.027  1.00  0.00              
ATOM     17  CA  ASP    17      58.559   7.268  36.803  1.00  0.00              
ATOM     18  CA  TYR    18      58.912   3.548  37.027  1.00  0.00              
ATOM     19  CA  GLY    19      56.198   1.735  39.110  1.00  0.00              
ATOM     20  CA  LYS    20      53.924   4.722  39.003  1.00  0.00              
ATOM     21  CA  ASP    21      50.445   5.571  37.850  1.00  0.00              
ATOM     22  CA  LEU    22      51.012   8.768  35.772  1.00  0.00              
ATOM     23  CA  VAL    23      48.664   7.854  32.974  1.00  0.00              
ATOM     24  CA  ARG    24      45.813   6.972  35.258  1.00  0.00              
ATOM     25  CA  GLN    25      46.089  10.198  37.210  1.00  0.00              
ATOM     26  CA  ILE    26      46.247  12.294  34.131  1.00  0.00              
ATOM     27  CA  GLU    27      43.229  10.681  32.603  1.00  0.00              
ATOM     28  CA  GLU    28      41.268  11.154  35.739  1.00  0.00              
ATOM     29  CA  PHE    29      42.191  14.792  36.067  1.00  0.00              
ATOM     30  CA  LEU    30      41.380  15.521  32.464  1.00  0.00              
ATOM     31  CA  GLU    31      38.000  13.851  32.755  1.00  0.00              
ATOM     32  CA  GLU    32      37.099  15.642  36.038  1.00  0.00              
ATOM     33  CA  LYS    33      37.816  19.048  34.661  1.00  0.00              
ATOM     34  CA  GLY    34      36.238  18.446  31.214  1.00  0.00              
ATOM     35  CA  ILE    35      39.674  18.822  29.621  1.00  0.00              
ATOM     36  CA  HIS    36      40.717  17.238  26.434  1.00  0.00              
ATOM     37  CA  ALA    37      44.246  16.071  26.014  1.00  0.00              
ATOM     38  CA  ALA    38      46.702  14.303  28.303  1.00  0.00              
ATOM     39  CA  HIS    39      50.142  13.112  27.171  1.00  0.00              
ATOM     40  CA  ILE    40      51.812  10.464  29.128  1.00  0.00              
ATOM     41  CA  SER    41      55.568  10.124  29.187  1.00  0.00              
ATOM     42  CA  ALA    42      57.069   7.088  30.703  1.00  0.00              
ATOM     43  CA  ILE    43      60.698   7.064  31.749  1.00  0.00              
ATOM     44  CA  GLY    44      62.374   3.769  32.671  1.00  0.00              
ATOM     45  CA  ALA    45      65.996   3.629  33.552  1.00  0.00              
ATOM     46  CA  VAL    46      67.619   0.231  33.088  1.00  0.00              
ATOM     47  CA  ARG    47      69.556   0.870  29.827  1.00  0.00              
ATOM     48  CA  SER    48      67.461   3.723  28.606  1.00  0.00              
ATOM     49  CA  ALA    49      63.819   3.131  27.880  1.00  0.00              
ATOM     50  CA  VAL    50      61.560   6.119  26.989  1.00  0.00              
ATOM     51  CA  ILE    51      57.970   5.550  26.210  1.00  0.00              
ATOM     52  CA  GLY    52      55.709   8.411  25.073  1.00  0.00              
ATOM     53  CA  TYR    53      51.963   7.836  25.096  1.00  0.00              
ATOM     54  CA  TYR    54      49.342  10.071  23.593  1.00  0.00              
ATOM     55  CA  ASP    55      45.775   9.760  24.962  1.00  0.00              
ATOM     56  CA  GLN    56      42.865   9.995  22.556  1.00  0.00              
ATOM     57  CA  GLU    57      41.463   6.441  22.829  1.00  0.00              
ATOM     58  CA  LYS    58      44.852   4.876  23.257  1.00  0.00              
ATOM     59  CA  LYS    59      45.036   1.963  25.554  1.00  0.00              
ATOM     60  CA  GLU    60      47.531  -0.316  23.951  1.00  0.00              
ATOM     61  CA  TYR    61      47.533  -2.301  20.871  1.00  0.00              
ATOM     62  CA  VAL    62      44.736  -4.293  19.398  1.00  0.00              
ATOM     63  CA  LYS    63      44.658  -3.349  15.769  1.00  0.00              
ATOM     64  CA  LYS    64      41.288  -2.401  14.359  1.00  0.00              
ATOM     65  CA  GLU    65      40.830  -1.112  10.846  1.00  0.00              
ATOM     66  CA  LEU    66      38.323   1.765  10.464  1.00  0.00              
ATOM     67  CA  MET    67      38.009   3.971   7.454  1.00  0.00              
ATOM     68  CA  GLU    68      36.783   7.469   8.013  1.00  0.00              
ATOM     69  CA  PRO    69      37.025  10.591  10.100  1.00  0.00              
ATOM     70  CA  LEU    70      40.817  10.846  10.584  1.00  0.00              
ATOM     71  CA  GLU    71      42.454  11.595  13.894  1.00  0.00              
ATOM     72  CA  ILE    72      46.081  11.066  14.174  1.00  0.00              
ATOM     73  CA  LEU    73      47.551   9.874  17.264  1.00  0.00              
ATOM     74  CA  SER    74      51.307   9.723  17.466  1.00  0.00              
ATOM     75  CA  LEU    75      53.093   7.343  19.737  1.00  0.00              
ATOM     76  CA  SER    76      56.760   7.858  20.374  1.00  0.00              
ATOM     77  CA  GLY    77      58.980   5.023  21.460  1.00  0.00              
ATOM     78  CA  ASN    78      62.540   5.748  22.496  1.00  0.00              
ATOM     79  CA  VAL    79      64.925   3.050  22.995  1.00  0.00              
ATOM     80  CA  SER    80      68.491   3.913  23.842  1.00  0.00              
ATOM     81  CA  MET    81      71.465   1.646  23.012  1.00  0.00              
ATOM     82  CA  LYS    82      74.662   3.485  22.328  1.00  0.00              
ATOM     83  CA  ASP    83      75.352   2.599  18.748  1.00  0.00              
ATOM     84  CA  SER    84      73.007   4.971  17.035  1.00  0.00              
ATOM     85  CA  LYS    85      70.016   5.331  19.284  1.00  0.00              
ATOM     86  CA  PRO    86      66.896   3.703  18.230  1.00  0.00              
ATOM     87  CA  PHE    87      63.840   5.986  17.998  1.00  0.00              
ATOM     88  CA  CYS    88      60.488   4.488  17.164  1.00  0.00              
ATOM     89  CA  HIS    89      57.571   6.484  15.949  1.00  0.00              
ATOM     90  CA  ILE    90      54.207   4.814  15.882  1.00  0.00              
ATOM     91  CA  HIS    91      51.378   6.263  14.018  1.00  0.00              
ATOM     92  CA  VAL    92      47.878   5.464  15.177  1.00  0.00              
ATOM     93  CA  LEU    93      44.874   6.549  13.151  1.00  0.00              
ATOM     94  CA  LEU    94      41.609   7.143  14.961  1.00  0.00              
ATOM     95  CA  GLY    95      38.317   7.391  12.912  1.00  0.00              
ATOM     96  CA  LYS    96      35.376   9.503  14.156  1.00  0.00              
ATOM     97  CA  ASP    97      33.370   6.325  14.898  1.00  0.00              
ATOM     98  CA  GLY    98      36.071   5.005  17.273  1.00  0.00              
ATOM     99  CA  GLU    99      37.530   2.492  14.922  1.00  0.00              
ATOM    100  CA  VAL   100      41.180   2.208  15.497  1.00  0.00              
ATOM    101  CA  TYR   101      43.516   1.807  12.695  1.00  0.00              
ATOM    102  CA  GLY   102      46.969   0.524  13.450  1.00  0.00              
ATOM    103  CA  GLY   103      49.506   0.394  10.690  1.00  0.00              
ATOM    104  CA  HIS   104      52.929  -1.092  10.979  1.00  0.00              
ATOM    105  CA  LEU   105      54.591   1.453  13.287  1.00  0.00              
ATOM    106  CA  PHE   106      51.693   1.299  15.835  1.00  0.00              
ATOM    107  CA  SER   107      50.942  -2.443  16.039  1.00  0.00              
ATOM    108  CA  ALA   108      54.633  -3.340  16.251  1.00  0.00              
ATOM    109  CA  GLU   109      55.353  -0.777  18.987  1.00  0.00              
ATOM    110  CA  VAL   110      52.788  -1.383  21.761  1.00  0.00              
ATOM    111  CA  PHE   111      53.248  -5.152  21.805  1.00  0.00              
ATOM    112  CA  ALA   112      57.049  -4.858  21.788  1.00  0.00              
ATOM    113  CA  CYS   113      57.289  -2.328  24.657  1.00  0.00              
ATOM    114  CA  GLU   114      54.991  -4.461  26.822  1.00  0.00              
ATOM    115  CA  VAL   115      56.919  -7.721  26.078  1.00  0.00              
ATOM    116  CA  PHE   116      60.318  -6.082  26.923  1.00  0.00              
ATOM    117  CA  VAL   117      59.715  -3.858  29.910  1.00  0.00              
ATOM    118  CA  LEU   118      62.380  -1.591  31.335  1.00  0.00              
ATOM    119  CA  PRO   119      62.283  -0.554  34.985  1.00  0.00              
ATOM    120  CA  LEU   120      65.423   0.436  36.770  1.00  0.00              
ATOM    121  CA  SER   121      65.677  -0.719  40.314  1.00  0.00              
ATOM    122  CA  GLY   122      67.562  -3.935  39.898  1.00  0.00              
ATOM    123  CA  GLU   123      65.361  -5.589  37.216  1.00  0.00              
ATOM    124  CA  ALA   124      67.042  -7.141  34.192  1.00  0.00              
ATOM    125  CA  PRO   125      64.611  -6.584  31.331  1.00  0.00              
ATOM    126  CA  GLU   126      64.275 -10.147  30.028  1.00  0.00              
ATOM    127  CA  ARG   127      63.910 -11.372  33.643  1.00  0.00              
ATOM    128  CA  ALA   128      61.227  -8.901  34.687  1.00  0.00              
ATOM    129  CA  PHE   129      59.125  -9.476  31.540  1.00  0.00              
ATOM    130  CA  ASP   130      59.089 -13.216  31.220  1.00  0.00              
ATOM    131  CA  GLU   131      61.628 -13.931  28.455  1.00  0.00              
ATOM    132  CA  GLN   132      59.571 -16.771  27.085  1.00  0.00              
ATOM    133  CA  THR   133      56.527 -14.503  26.578  1.00  0.00              
ATOM    134  CA  GLY   134      58.549 -11.491  25.367  1.00  0.00              
ATOM    135  CA  LEU   135      58.114 -11.653  21.752  1.00  0.00              
ATOM    136  CA  PHE   136      57.156  -8.635  19.838  1.00  0.00              
ATOM    137  CA  LEU   137      56.007  -9.716  16.436  1.00  0.00              
ATOM    138  CA  TRP   138      53.260  -8.013  14.448  1.00  0.00              
ATOM    139  CA  LEU   139      52.160  -9.682  11.177  1.00  0.00              
ATOM    140  CA  GLU   140      52.722  -6.707   8.868  1.00  0.00              
ATOM    141  CA  HIS   141      56.125  -6.059  10.507  1.00  0.00              
ATOM    142  CA  HIS   142      57.508  -9.552  10.285  1.00  0.00              
ATOM    143  CA  HIS   143      56.176 -10.220   6.837  1.00  0.00              
ATOM    144  CA  HIS   144      56.790  -7.062   5.257  1.00  0.00              
ATOM    145  CA  HIS   145      57.802 -11.030   4.300  1.00  0.00              
ATOM    146  CA  HIS   146      55.154 -12.583   7.164  1.00  0.00              
TER                                                                             
END
