
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  146 (  146),  selected  140 , name T0312TS599_4
# Molecule2: number of CA atoms  140 ( 1114),  selected  140 , name T0312.pdb
# PARAMETERS: T0312TS599_4.T0312.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    44         6 - 49          4.98    16.10
  LCS_AVERAGE:     24.06

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    19        19 - 37          2.00    17.03
  LONGEST_CONTINUOUS_SEGMENT:    19        20 - 38          1.92    17.13
  LONGEST_CONTINUOUS_SEGMENT:    19        21 - 39          1.80    17.36
  LONGEST_CONTINUOUS_SEGMENT:    19        22 - 40          1.96    17.46
  LONGEST_CONTINUOUS_SEGMENT:    19        23 - 41          1.96    17.54
  LCS_AVERAGE:      8.78

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    17        21 - 37          0.85    17.57
  LCS_AVERAGE:      5.25

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  140
LCS_GDT     M       1     M       1      3    8   12     0    3    4    5    9    9   10   11   13   16   18   19   22   22   23   25   26   27   29   32 
LCS_GDT     K       2     K       2      5    8   12     1    5    6    7    9    9   11   11   13   16   18   19   22   22   24   25   26   27   30   32 
LCS_GDT     V       3     V       3      5    8   12     4    5    6    7    9    9   11   11   13   16   18   20   22   24   25   29   30   37   37   38 
LCS_GDT     F       4     F       4      5    8   12     4    5    6    7    9    9   11   11   13   16   18   20   22   24   29   33   35   37   44   51 
LCS_GDT     E       5     E       5      5    8   42     4    5    6    7    9   11   13   13   14   17   21   22   30   32   35   42   46   56   60   71 
LCS_GDT     F       6     F       6      5    8   44     4    5    8   10   12   16   17   19   22   26   30   36   38   52   55   60   64   70   75   80 
LCS_GDT     E       7     E       7      5    8   44     3    4    6    7    9    9   14   24   32   43   47   53   56   67   70   74   76   78   81   84 
LCS_GDT     V       8     V       8      5   12   44     3    4    8   15   21   27   33   40   44   49   51   55   58   67   70   74   77   80   82   85 
LCS_GDT     G       9     G       9      6   12   44     3    5    7   10   18   24   29   34   42   49   51   55   58   67   70   74   77   80   82   85 
LCS_GDT     K      10     K      10      7   12   44     5    9   14   18   20   27   33   40   44   49   51   55   58   67   70   74   77   80   82   85 
LCS_GDT     G      11     G      11      7   12   44     5    9   14   18   21   27   33   40   44   49   51   55   58   67   70   74   77   80   82   85 
LCS_GDT     F      12     F      12      7   12   44     3    9   14   18   21   27   33   40   44   49   51   55   58   67   70   74   77   80   82   85 
LCS_GDT     L      13     L      13      7   12   44     4    9   14   18   21   27   33   40   44   49   51   55   58   67   70   74   77   80   82   85 
LCS_GDT     L      14     L      14      7   12   44     4    9   14   18   21   27   33   40   44   49   51   55   58   67   70   74   77   80   82   85 
LCS_GDT     R      15     R      15      7   12   44     5    9   14   18   21   27   33   40   44   49   51   55   58   67   70   74   77   80   82   85 
LCS_GDT     L      16     L      16      7   12   44     3    8   14   18   20   27   33   40   44   49   51   55   58   67   70   74   77   80   82   85 
LCS_GDT     D      17     D      17      7   12   44     5    6    7   10   12   24   29   40   44   49   51   55   58   67   70   74   77   80   82   85 
LCS_GDT     Y      18     Y      18      7   12   44     5    9   14   18   20   24   33   40   44   49   51   55   58   67   70   74   77   80   82   85 
LCS_GDT     G      19     G      19      6   19   44     5    9   12   17   21   27   33   40   44   49   51   55   58   67   70   74   77   80   82   85 
LCS_GDT     K      20     K      20      6   19   44     5    6    6   12   19   27   33   40   44   49   51   55   58   67   70   74   77   80   82   85 
LCS_GDT     D      21     D      21     17   19   44     5   16   16   16   17   27   31   36   40   48   51   55   58   67   70   74   77   80   82   85 
LCS_GDT     L      22     L      22     17   19   44     8   16   16   16   17   19   21   29   37   43   48   53   58   63   70   74   77   80   82   85 
LCS_GDT     V      23     V      23     17   19   44    11   16   16   16   17   21   31   34   40   49   51   55   58   67   70   74   77   80   82   85 
LCS_GDT     R      24     R      24     17   19   44    11   16   16   16   21   27   33   40   44   49   51   55   58   67   70   74   77   80   82   85 
LCS_GDT     Q      25     Q      25     17   19   44    11   16   16   16   21   27   32   36   43   49   51   55   58   67   70   74   77   80   82   85 
LCS_GDT     I      26     I      26     17   19   44    11   16   16   16   19   27   32   40   44   49   51   55   58   67   70   74   77   80   82   85 
LCS_GDT     E      27     E      27     17   19   44    11   16   16   16   21   27   33   40   44   49   51   55   58   67   70   74   77   80   82   85 
LCS_GDT     E      28     E      28     17   19   44    11   16   16   16   21   27   33   40   44   49   51   55   58   67   70   74   77   80   82   85 
LCS_GDT     F      29     F      29     17   19   44    11   16   16   16   21   27   33   40   44   49   51   55   58   67   70   74   77   80   82   85 
LCS_GDT     L      30     L      30     17   19   44    11   16   16   16   21   27   33   40   44   49   51   55   58   67   70   74   77   80   82   85 
LCS_GDT     E      31     E      31     17   19   44    11   16   16   16   21   27   33   40   44   49   51   55   58   67   70   74   77   80   82   85 
LCS_GDT     E      32     E      32     17   19   44    11   16   16   16   21   27   33   40   44   49   51   55   58   67   70   74   77   80   82   85 
LCS_GDT     K      33     K      33     17   19   44    11   16   16   16   21   27   33   40   44   49   51   55   58   67   70   74   77   80   82   85 
LCS_GDT     G      34     G      34     17   19   44     6   16   16   16   21   27   33   40   44   49   51   55   58   67   70   74   77   80   82   85 
LCS_GDT     I      35     I      35     17   19   44     6   16   16   16   19   27   32   40   44   49   51   55   58   67   70   74   77   80   82   85 
LCS_GDT     H      36     H      36     17   19   44     3   16   16   16   17   19   26   33   38   45   51   55   58   67   70   74   77   80   82   85 
LCS_GDT     A      37     A      37     17   19   44     3    5    9   15   17   19   21   27   37   43   48   55   58   67   70   74   77   80   82   85 
LCS_GDT     A      38     A      38      7   19   44     4    7    8   10   13   17   20   24   31   43   48   55   58   67   70   74   77   80   82   85 
LCS_GDT     H      39     H      39      7   19   44     4    7    9   13   16   19   21   24   29   37   45   53   58   67   70   74   77   79   82   85 
LCS_GDT     I      40     I      40      7   19   44     4    7    9   13   16   19   21   24   32   43   47   53   58   67   70   74   77   80   82   85 
LCS_GDT     S      41     S      41      7   19   44     4    7    9   13   17   19   21   24   32   43   47   53   57   67   70   74   77   80   82   85 
LCS_GDT     A      42     A      42      7   18   44     4    7    7   12   17   19   21   25   36   43   48   53   58   67   70   74   77   80   82   85 
LCS_GDT     I      43     I      43      7   18   44     3    7    7   12   17   19   21   29   37   43   48   53   58   67   70   74   77   80   82   85 
LCS_GDT     G      44     G      44      7    9   44     3    7    7    8    8   11   21   29   37   43   48   53   58   67   70   74   77   80   82   85 
LCS_GDT     A      45     A      45      4   11   44     3    3    5    6    9   11   20   27   37   44   48   55   58   67   70   74   77   80   82   85 
LCS_GDT     V      46     V      46      6   13   44     3    5   10   13   13   16   19   20   22   23   29   49   58   67   70   74   77   80   82   85 
LCS_GDT     R      47     R      47      6   13   44     3    5    9   13   13   16   19   20   33   37   39   49   56   61   69   74   77   80   82   85 
LCS_GDT     S      48     S      48      6   13   44     3    5   10   13   13   16   19   20   22   26   40   49   55   61   69   74   76   80   82   85 
LCS_GDT     A      49     A      49      6   13   44     4    6    9   13   13   16   19   20   22   36   43   49   55   61   69   74   77   80   82   85 
LCS_GDT     V      50     V      50      6   13   39     4    6    9   13   13   16   19   20   22   23   26   26   32   42   52   58   67   74   81   85 
LCS_GDT     I      51     I      51      6   13   33     4    6   10   13   13   16   19   20   22   23   26   32   40   43   56   65   72   76   82   85 
LCS_GDT     G      52     G      52      6   13   28     3    6   10   13   13   16   19   20   22   23   24   25   27   28   31   36   44   51   59   69 
LCS_GDT     Y      53     Y      53      6   13   28     4    6   10   13   13   16   19   20   22   23   24   25   27   28   31   33   35   37   41   54 
LCS_GDT     Y      54     Y      54      6   13   28     4    6   10   13   13   16   19   20   22   23   24   25   27   28   31   33   35   38   41   44 
LCS_GDT     D      55     D      55      6   13   28     4    4    9   10   12   15   19   20   22   23   24   25   27   28   30   31   34   37   39   40 
LCS_GDT     Q      56     Q      56      6   13   28     4    6   10   13   13   16   19   20   22   23   24   25   27   28   30   31   34   37   41   44 
LCS_GDT     E      57     E      57      3   13   28     3    6   10   13   13   16   19   20   22   23   24   25   27   28   30   31   34   37   39   41 
LCS_GDT     K      58     K      58      3   13   28     3    3   10   13   13   16   19   20   22   23   24   25   27   28   30   31   34   36   41   43 
LCS_GDT     K      59     K      59      3   12   28     3    4    7   10   12   13   15   18   22   23   24   25   27   28   30   31   35   40   44   46 
LCS_GDT     E      60     E      60      3   12   28     3    4    6   11   12   15   18   19   22   23   24   25   27   28   30   31   35   40   44   46 
LCS_GDT     Y      61     Y      61      5   12   28     3    4    7    8   12   13   15   17   22   23   24   25   27   28   31   33   35   39   44   46 
LCS_GDT     V      62     V      62      7   12   28     3    5    7   10   12   16   18   19   22   23   24   25   27   28   31   33   35   39   44   46 
LCS_GDT     K      63     K      63      7   12   28     6    6    7   10   12   13   15   19   22   23   24   25   27   28   31   33   35   38   42   46 
LCS_GDT     K      64     K      64      7   12   28     6    6    7   10   13   16   19   20   22   23   24   25   27   28   31   33   35   39   44   46 
LCS_GDT     E      65     E      65      7   12   28     6    6    7   10   12   16   18   19   22   23   24   25   27   28   30   32   34   39   43   51 
LCS_GDT     L      66     L      66      7   12   28     6    6    7   11   13   16   19   20   22   23   24   25   27   35   49   57   57   65   71   77 
LCS_GDT     M      67     M      67      7   12   28     6    6   10   13   13   16   19   20   22   23   24   25   32   42   49   58   60   70   75   77 
LCS_GDT     E      68     E      68      7   12   40     6    6    7   10   11   14   19   20   22   26   34   48   53   60   64   71   75   80   82   85 
LCS_GDT     P      69     P      69      7   12   40     3    6    7    8   11   13   14   25   33   37   40   49   56   61   69   74   77   80   82   85 
LCS_GDT     L      70     L      70      7   12   40     3    4    6    9   13   19   25   33   42   49   51   55   58   67   70   74   77   80   82   85 
LCS_GDT     E      71     E      71      7    9   40     3    8   14   18   20   26   33   40   44   49   51   55   58   67   70   74   77   80   82   85 
LCS_GDT     I      72     I      72      7    9   40     5    8   14   18   20   26   33   40   44   49   51   55   58   67   70   74   77   80   82   85 
LCS_GDT     L      73     L      73      7   13   40     4    6    9   16   21   27   33   36   42   48   51   54   58   67   70   74   77   80   82   85 
LCS_GDT     S      74     S      74      7   13   40     4    6   10   16   21   27   33   40   44   49   51   55   58   67   70   74   77   80   82   85 
LCS_GDT     L      75     L      75      7   13   40     4    8   11   16   21   27   33   40   44   49   51   55   58   67   70   74   77   80   82   85 
LCS_GDT     S      76     S      76      7   13   40     4    8   11   16   21   27   33   40   44   49   51   55   58   67   70   74   77   80   82   85 
LCS_GDT     G      77     G      77      7   13   40     3    8   11   15   21   27   33   40   44   49   51   55   58   67   70   74   77   80   82   85 
LCS_GDT     N      78     N      78      7   13   40     3    6   14   18   21   27   33   40   44   49   51   55   58   67   70   74   77   80   82   85 
LCS_GDT     V      79     V      79      7   13   40     3    6   10   16   20   24   33   40   44   49   51   55   58   67   70   74   77   80   82   85 
LCS_GDT     S      80     S      80      6   13   40     3    5   10   16   19   23   26   40   44   49   51   55   58   67   70   74   77   80   82   85 
LCS_GDT     M      81     M      81      6   13   40     3    5    9   16   17   22   26   34   44   49   51   55   58   67   70   74   77   80   82   85 
LCS_GDT     K      82     K      82      6   13   40     3    5    6    9   16   20   22   28   31   37   47   51   58   66   70   74   77   78   81   83 
LCS_GDT     D      83     D      83      6   13   40     3    5    6    9   11   15   20   24   28   35   47   51   58   66   70   74   77   78   80   82 
LCS_GDT     S      84     S      84      5   14   40     3    5   10   16   19   22   26   31   34   38   43   51   57   67   70   74   77   80   82   85 
LCS_GDT     K      85     K      85      8   14   40     4    8    9   16   19   22   26   31   34   38   43   51   57   67   70   74   77   80   82   85 
LCS_GDT     P      86     P      86      8   14   40     4    8    9   12   13   20   24   28   34   38   42   43   56   60   63   74   77   80   82   85 
LCS_GDT     F      87     F      87      8   14   40     4    8   10   16   19   22   26   31   35   43   49   55   58   67   70   74   77   80   82   85 
LCS_GDT     C      88     C      88      8   14   40     4    8    9   13   19   22   26   31   34   38   45   51   58   67   70   74   77   80   82   85 
LCS_GDT     H      89     H      89      8   14   40     5    9   14   18   20   24   33   40   44   49   51   55   58   67   70   74   77   80   82   85 
LCS_GDT     I      90     I      90      8   14   40     4    8   10   16   20   24   32   40   44   49   51   55   58   67   70   74   77   80   82   85 
LCS_GDT     H      91     H      91      8   14   40     5    9   14   18   20   27   33   40   44   49   51   55   58   67   70   74   77   80   82   85 
LCS_GDT     V      92     V      92      8   14   40     4    9   14   18   20   26   33   40   44   49   51   55   58   67   70   74   77   80   82   85 
LCS_GDT     L      93     L      93      7   14   40     5    9   14   18   20   27   33   40   44   49   51   55   58   67   70   74   77   80   82   85 
LCS_GDT     L      94     L      94      7   14   40     4    6    7   15   20   24   32   40   44   49   51   55   58   67   70   74   77   80   82   85 
LCS_GDT     G      95     G      95      7   14   40     4    9   13   18   20   24   32   40   44   49   51   55   58   67   70   74   77   80   82   85 
LCS_GDT     K      96     K      96      4   14   40     3    9   13   18   20   24   32   40   44   49   51   55   58   67   70   74   77   80   82   85 
LCS_GDT     D      97     D      97      5   14   40     3    9   13   18   20   24   32   40   44   49   51   55   58   67   70   74   77   80   82   85 
LCS_GDT     G      98     G      98      6   12   40     3    4    7    9   14   19   23   28   31   38   42   48   56   66   70   74   77   80   82   85 
LCS_GDT     E      99     E      99      6   12   40     3    5    7   11   16   19   24   28   31   37   42   43   56   62   70   74   77   80   82   85 
LCS_GDT     V     100     V     100      6   12   40     3    5    7   11   17   21   24   29   33   38   51   54   57   66   70   74   77   80   82   85 
LCS_GDT     Y     101     Y     101      6   12   40     3    5    9   16   19   22   28   31   43   49   51   55   58   67   70   74   77   80   82   85 
LCS_GDT     G     102     G     102      6   12   40     3    5    9   16   19   23   30   40   44   49   51   55   58   67   70   74   77   80   82   85 
LCS_GDT     G     103     G     103      6   11   40     3    5    7   11   16   21   28   31   44   49   51   55   58   67   70   74   77   80   82   85 
LCS_GDT     H     104     H     104      3   10   40     3    3    5    8   13   17   22   30   34   38   42   51   57   66   70   74   77   80   82   85 
LCS_GDT     L     105     L     105      3    9   40     3    3    4    5    9   10   10   13   19   22   25   28   31   35   36   42   56   60   62   75 
LCS_GDT     F     106     F     106      3    4   40     3    3    4    8   13   16   21   24   30   32   34   38   41   45   50   54   58   70   75   80 
LCS_GDT     S     107     S     107      3    4   40     3    4    7   12   17   21   24   28   31   32   34   38   43   52   54   60   64   66   75   80 
LCS_GDT     A     108     A     108      3    4   40     3    3    4    6    9   13   18   20   24   28   29   31   33   34   37   41   43   45   46   50 
LCS_GDT     E     109     E     109      3    4   40     3    3    4    6    9   11   16   19   24   28   29   31   33   34   35   36   40   44   46   49 
LCS_GDT     V     110     V     110      3    4   40     3    3    3    6    9   10   15   16   22   25   29   30   33   34   34   36   40   43   46   49 
LCS_GDT     F     111     F     111      3    4   17     3    3    3    3    4    6    8   10   12   14   16   18   19   20   25   27   27   32   36   40 
LCS_GDT     A     112     A     112      3    4   17     3    3    3    3    4    6    9   10   13   16   18   18   20   21   23   24   26   27   29   31 
LCS_GDT     C     113     C     113      5   12   17     3    4    6   10   11   11   11   13   13   16   18   18   20   21   23   24   26   27   29   31 
LCS_GDT     E     114     E     114      6   12   17     3    5    6   10   11   11   11   13   13   14   18   18   20   21   23   25   28   31   31   36 
LCS_GDT     V     115     V     115      8   12   17     3    6    8   10   11   11   11   13   13   14   18   18   20   22   23   28   31   34   36   40 
LCS_GDT     F     116     F     116      8   12   17     3    6    8   10   11   11   11   13   13   15   16   18   25   28   31   33   35   37   38   41 
LCS_GDT     V     117     V     117      8   12   17     3    6    8   10   11   11   11   13   13   15   18   21   25   28   31   33   35   38   40   42 
LCS_GDT     L     118     L     118      8   12   17     3    6    8   10   11   11   11   13   13   14   15   15   18   24   27   30   33   37   39   41 
LCS_GDT     P     119     P     119      8   12   17     4    6    8   10   11   11   11   13   13   14   15   15   17   18   21   23   23   26   27   30 
LCS_GDT     L     120     L     120      8   12   17     4    6    8   10   11   11   11   13   13   14   15   15   17   18   21   23   24   26   28   31 
LCS_GDT     S     121     S     121      8   12   17     4    6    8   10   11   11   11   13   13   14   15   15   17   18   21   23   24   26   27   27 
LCS_GDT     G     122     G     122      8   12   17     5    5    8   10   11   11   11   13   13   14   15   15   18   18   21   23   24   26   28   30 
LCS_GDT     E     123     E     123      5   12   17     5    5    5    7    9   10   11   13   13   14   15   15   18   18   21   23   24   26   27   30 
LCS_GDT     A     124     A     124      5   12   17     5    5    7    9   11   11   11   13   13   19   22   24   25   27   27   28   29   34   34   36 
LCS_GDT     P     125     P     125      5    8   17     5    5    5    6    7    8   10   19   21   21   23   24   25   27   27   28   29   34   35   37 
LCS_GDT     E     126     E     126      5    8   17     5    5    5    7    7    8    9   10   12   14   15   15   18   23   27   28   29   34   35   36 
LCS_GDT     R     127     R     127      3    4   17     3    3    4    4    6    6   10   13   13   14   15   15   18   19   25   28   29   32   33   39 
LCS_GDT     A     128     A     128      7    7   17     3    3    6    7    7    7    8    9    9   10   10   13   15   18   25   28   29   32   37   39 
LCS_GDT     F     129     F     129      7    7   12     3    6    6    7    7    7    8    9    9   10   23   23   25   38   40   46   58   62   72   77 
LCS_GDT     D     130     D     130      7    7   12     3    6    6    7    7    7    8    9    9   11   23   23   33   38   40   46   53   60   70   77 
LCS_GDT     E     131     E     131      7    7   12     3    6    6    7    7    7    8   10   13   21   26   30   35   45   53   59   68   72   80   85 
LCS_GDT     Q     132     Q     132      7    7   12     3    6    6    7    7    8    9   10   11   17   20   28   41   46   52   58   65   70   75   84 
LCS_GDT     T     133     T     133      7    7   12     3    6    6    7    8    8    9   17   18   26   31   36   42   46   52   61   67   71   81   84 
LCS_GDT     G     134     G     134      7    7   12     3    6    6    7   13   16   21   25   33   37   45   49   56   61   66   71   76   80   82   85 
LCS_GDT     L     135     L     135      5    7   12     3    4    5   10   12   19   21   25   33   37   39   47   56   60   66   70   76   80   82   85 
LCS_GDT     F     136     F     136      5    7   12     3    4    5    7   16   19   21   25   33   37   39   49   56   61   66   71   76   80   82   85 
LCS_GDT     L     137     L     137      5    7   12     3    4    7   12   16   19   21   25   33   37   40   47   56   60   65   69   73   80   82   85 
LCS_GDT     W     138     W     138      5    7   12     3    4    5   11   12   19   21   23   33   37   39   39   43   55   62   68   72   78   82   85 
LCS_GDT     L     139     L     139      3    7   12     3    3    7    8   13   16   19   20   27   37   39   39   42   49   62   68   71   78   82   85 
LCS_GDT     E     140     E     140      3    3   12     3    8    9    9   13   16   19   23   25   26   29   36   42   46   48   51   56   62   67   73 
LCS_AVERAGE  LCS_A:  12.70  (   5.25    8.78   24.06 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     11     16     16     18     21     27     33     40     44     49     51     55     58     67     70     74     77     80     82     85 
GDT PERCENT_CA   7.86  11.43  11.43  12.86  15.00  19.29  23.57  28.57  31.43  35.00  36.43  39.29  41.43  47.86  50.00  52.86  55.00  57.14  58.57  60.71
GDT RMS_LOCAL    0.26   0.45   0.45   1.34   1.77   2.17   2.63   3.04   3.19   3.44   3.53   3.89   4.17   4.76   4.90   5.16   5.36   5.71   5.88   6.24
GDT RMS_ALL_CA  17.36  17.61  17.61  16.14  17.74  17.60  16.84  16.52  16.50  16.45  16.49  16.41  16.46  16.24  16.27  16.22  16.18  15.96  15.99  15.90

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         37.355
LGA    K       2      K       2         33.007
LGA    V       3      V       3         28.218
LGA    F       4      F       4         23.687
LGA    E       5      E       5         19.847
LGA    F       6      F       6         14.218
LGA    E       7      E       7          9.281
LGA    V       8      V       8          2.677
LGA    G       9      G       9          4.960
LGA    K      10      K      10          2.509
LGA    G      11      G      11          2.572
LGA    F      12      F      12          2.728
LGA    L      13      L      13          2.849
LGA    L      14      L      14          2.725
LGA    R      15      R      15          1.841
LGA    L      16      L      16          2.381
LGA    D      17      D      17          3.779
LGA    Y      18      Y      18          2.777
LGA    G      19      G      19          1.225
LGA    K      20      K      20          2.497
LGA    D      21      D      21          5.326
LGA    L      22      L      22          6.637
LGA    V      23      V      23          5.078
LGA    R      24      R      24          3.745
LGA    Q      25      Q      25          4.646
LGA    I      26      I      26          4.130
LGA    E      27      E      27          2.870
LGA    E      28      E      28          3.100
LGA    F      29      F      29          3.405
LGA    L      30      L      30          3.011
LGA    E      31      E      31          3.093
LGA    E      32      E      32          3.269
LGA    K      33      K      33          2.899
LGA    G      34      G      34          3.498
LGA    I      35      I      35          3.972
LGA    H      36      H      36          5.893
LGA    A      37      A      37          6.876
LGA    A      38      A      38          7.305
LGA    H      39      H      39          8.706
LGA    I      40      I      40          8.265
LGA    S      41      S      41          9.002
LGA    A      42      A      42          8.591
LGA    I      43      I      43          8.899
LGA    G      44      G      44          8.268
LGA    A      45      A      45          7.565
LGA    V      46      V      46          8.161
LGA    R      47      R      47          8.557
LGA    S      48      S      48         10.775
LGA    A      49      A      49         10.034
LGA    V      50      V      50         14.046
LGA    I      51      I      51         12.293
LGA    G      52      G      52         16.472
LGA    Y      53      Y      53         17.578
LGA    Y      54      Y      54         19.958
LGA    D      55      D      55         23.582
LGA    Q      56      Q      56         22.648
LGA    E      57      E      57         29.015
LGA    K      58      K      58         29.979
LGA    K      59      K      59         30.431
LGA    E      60      E      60         29.257
LGA    Y      61      Y      61         27.834
LGA    V      62      V      62         27.408
LGA    K      63      K      63         27.263
LGA    K      64      K      64         23.957
LGA    E      65      E      65         23.882
LGA    L      66      L      66         18.332
LGA    M      67      M      67         18.581
LGA    E      68      E      68         12.824
LGA    P      69      P      69          9.069
LGA    L      70      L      70          6.166
LGA    E      71      E      71          2.196
LGA    I      72      I      72          2.092
LGA    L      73      L      73          4.944
LGA    S      74      S      74          3.727
LGA    L      75      L      75          3.731
LGA    S      76      S      76          3.159
LGA    G      77      G      77          3.555
LGA    N      78      N      78          2.631
LGA    V      79      V      79          3.521
LGA    S      80      S      80          3.980
LGA    M      81      M      81          4.673
LGA    K      82      K      82          8.734
LGA    D      83      D      83          9.506
LGA    S      84      S      84          9.342
LGA    K      85      K      85          8.977
LGA    P      86      P      86         10.289
LGA    F      87      F      87          6.203
LGA    C      88      C      88          6.973
LGA    H      89      H      89          3.116
LGA    I      90      I      90          3.611
LGA    H      91      H      91          2.532
LGA    V      92      V      92          1.965
LGA    L      93      L      93          1.464
LGA    L      94      L      94          3.996
LGA    G      95      G      95          3.485
LGA    K      96      K      96          3.099
LGA    D      97      D      97          3.397
LGA    G      98      G      98          7.856
LGA    E      99      E      99          8.250
LGA    V     100      V     100          6.466
LGA    Y     101      Y     101          5.281
LGA    G     102      G     102          4.135
LGA    G     103      G     103          4.868
LGA    H     104      H     104          8.439
LGA    L     105      L     105         14.063
LGA    F     106      F     106         13.475
LGA    S     107      S     107         13.914
LGA    A     108      A     108         19.078
LGA    E     109      E     109         24.339
LGA    V     110      V     110         24.521
LGA    F     111      F     111         26.789
LGA    A     112      A     112         30.384
LGA    C     113      C     113         28.559
LGA    E     114      E     114         25.499
LGA    V     115      V     115         21.738
LGA    F     116      F     116         21.119
LGA    V     117      V     117         20.263
LGA    L     118      L     118         22.894
LGA    P     119      P     119         25.063
LGA    L     120      L     120         29.950
LGA    S     121      S     121         35.789
LGA    G     122      G     122         39.683
LGA    E     123      E     123         38.794
LGA    A     124      A     124         35.370
LGA    P     125      P     125         29.447
LGA    E     126      E     126         30.139
LGA    R     127      R     127         29.228
LGA    A     128      A     128         27.489
LGA    F     129      F     129         21.985
LGA    D     130      D     130         23.143
LGA    E     131      E     131         20.580
LGA    Q     132      Q     132         19.531
LGA    T     133      T     133         16.221
LGA    G     134      G     134         12.090
LGA    L     135      L     135         11.151
LGA    F     136      F     136         10.990
LGA    L     137      L     137         11.875
LGA    W     138      W     138         13.739
LGA    L     139      L     139         14.507
LGA    E     140      E     140         20.847

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  146  140    4.0     40    3.04    26.429    21.774     1.275

LGA_LOCAL      RMSD =  3.038  Number of atoms =   40  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 16.540  Number of atoms =  140 
Std_ALL_ATOMS  RMSD = 15.538  (standard rmsd on all 140 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.201453 * X  +   0.784225 * Y  +  -0.586863 * Z  +  54.322491
  Y_new =  -0.213445 * X  +  -0.549601 * Y  +  -0.807701 * Z  +   5.257983
  Z_new =  -0.955959 * X  +   0.287977 * Y  +   0.056670 * Z  +  16.638136 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   1.376492   -1.765101  [ DEG:    78.8672   -101.1328 ]
  Theta =   1.272910    1.868682  [ DEG:    72.9324    107.0676 ]
  Phi   =  -0.814293    2.327299  [ DEG:   -46.6556    133.3444 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0312TS599_4                                  
REMARK     2: T0312.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0312TS599_4.T0312.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  146  140   4.0   40   3.04  21.774    15.54
REMARK  ---------------------------------------------------------- 
MOLECULE T0312TS599_4
PFRMAT TS                                                                       
TARGET T0312                                                                    
MODEL  4                                                                        
PARENT N/A                                                                      
ATOM      1  CA  MET     1      48.662  22.001  14.318  1.00  0.00              
ATOM      2  CA  LYS     2      50.586  22.124  17.899  1.00  0.00              
ATOM      3  CA  VAL     3      50.784  21.447  22.039  1.00  0.00              
ATOM      4  CA  PHE     4      54.623  20.716  22.122  1.00  0.00              
ATOM      5  CA  GLU     5      55.198  20.065  25.764  1.00  0.00              
ATOM      6  CA  PHE     6      58.849  19.577  26.455  1.00  0.00              
ATOM      7  CA  GLU     7      59.782  16.895  29.013  1.00  0.00              
ATOM      8  CA  VAL     8      63.363  17.697  29.823  1.00  0.00              
ATOM      9  CA  GLY     9      65.540  15.952  27.209  1.00  0.00              
ATOM     10  CA  LYS    10      65.559  18.663  24.604  1.00  0.00              
ATOM     11  CA  GLY    11      62.548  18.628  22.349  1.00  0.00              
ATOM     12  CA  PHE    12      62.860  18.850  18.574  1.00  0.00              
ATOM     13  CA  LEU    13      59.748  19.104  16.499  1.00  0.00              
ATOM     14  CA  LEU    14      59.750  17.847  12.949  1.00  0.00              
ATOM     15  CA  ARG    15      56.838  18.531  10.640  1.00  0.00              
ATOM     16  CA  LEU    16      56.368  16.407   7.574  1.00  0.00              
ATOM     17  CA  ASP    17      53.745  17.080   4.932  1.00  0.00              
ATOM     18  CA  TYR    18      52.374  14.088   3.075  1.00  0.00              
ATOM     19  CA  GLY    19      54.897  12.068   0.992  1.00  0.00              
ATOM     20  CA  LYS    20      57.883  13.354   2.869  1.00  0.00              
ATOM     21  CA  ASP    21      60.851  12.198   4.952  1.00  0.00              
ATOM     22  CA  LEU    22      60.529  14.420   8.001  1.00  0.00              
ATOM     23  CA  VAL    23      60.894  11.637  10.584  1.00  0.00              
ATOM     24  CA  ARG    24      64.287  10.651   9.241  1.00  0.00              
ATOM     25  CA  GLN    25      65.463  14.293   9.435  1.00  0.00              
ATOM     26  CA  ILE    26      64.154  14.761  12.961  1.00  0.00              
ATOM     27  CA  GLU    27      65.891  11.558  14.125  1.00  0.00              
ATOM     28  CA  GLU    28      69.079  12.747  12.590  1.00  0.00              
ATOM     29  CA  PHE    29      68.781  16.155  14.247  1.00  0.00              
ATOM     30  CA  LEU    30      68.109  14.785  17.677  1.00  0.00              
ATOM     31  CA  GLU    31      71.011  12.455  17.428  1.00  0.00              
ATOM     32  CA  GLU    32      73.429  15.139  16.174  1.00  0.00              
ATOM     33  CA  LYS    33      72.675  17.531  18.946  1.00  0.00              
ATOM     34  CA  GLY    34      72.713  14.831  21.663  1.00  0.00              
ATOM     35  CA  ILE    35      69.111  15.586  22.694  1.00  0.00              
ATOM     36  CA  HIS    36      66.690  13.181  24.008  1.00  0.00              
ATOM     37  CA  ALA    37      63.355  13.724  22.380  1.00  0.00              
ATOM     38  CA  ALA    38      62.187  14.127  18.795  1.00  0.00              
ATOM     39  CA  HIS    39      58.532  14.928  17.962  1.00  0.00              
ATOM     40  CA  ILE    40      57.348  14.094  14.501  1.00  0.00              
ATOM     41  CA  SER    41      54.201  15.546  13.081  1.00  0.00              
ATOM     42  CA  ALA    42      53.020  14.193   9.782  1.00  0.00              
ATOM     43  CA  ILE    43      50.124  15.889   8.049  1.00  0.00              
ATOM     44  CA  GLY    44      48.513  14.228   5.064  1.00  0.00              
ATOM     45  CA  ALA    45      45.640  15.722   3.346  1.00  0.00              
ATOM     46  CA  VAL    46      43.624  12.894   1.880  1.00  0.00              
ATOM     47  CA  ARG    47      40.285  13.446   3.695  1.00  0.00              
ATOM     48  CA  SER    48      42.205  14.404   6.826  1.00  0.00              
ATOM     49  CA  ALA    49      45.101  12.161   7.971  1.00  0.00              
ATOM     50  CA  VAL    50      47.162  13.311  10.888  1.00  0.00              
ATOM     51  CA  ILE    51      50.093  11.266  11.994  1.00  0.00              
ATOM     52  CA  GLY    52      51.692  12.010  15.286  1.00  0.00              
ATOM     53  CA  TYR    53      55.063  10.398  16.221  1.00  0.00              
ATOM     54  CA  TYR    54      56.268  10.681  19.738  1.00  0.00              
ATOM     55  CA  ASP    55      59.641   9.423  20.944  1.00  0.00              
ATOM     56  CA  GLN    56      59.666   8.192  24.484  1.00  0.00              
ATOM     57  CA  GLU    57      59.590  10.710  27.269  1.00  0.00              
ATOM     58  CA  LYS    58      55.975  10.873  28.531  1.00  0.00              
ATOM     59  CA  LYS    59      55.329  14.623  28.490  1.00  0.00              
ATOM     60  CA  GLU    60      52.310  14.778  26.251  1.00  0.00              
ATOM     61  CA  TYR    61      52.795  17.174  23.270  1.00  0.00              
ATOM     62  CA  VAL    62      49.478  16.549  21.609  1.00  0.00              
ATOM     63  CA  LYS    63      47.722  19.298  19.752  1.00  0.00              
ATOM     64  CA  LYS    64      46.481  18.396  16.348  1.00  0.00              
ATOM     65  CA  GLU    65      44.878  20.344  13.591  1.00  0.00              
ATOM     66  CA  LEU    66      42.701  18.268  11.196  1.00  0.00              
ATOM     67  CA  MET    67      41.024  19.861   8.229  1.00  0.00              
ATOM     68  CA  GLU    68      38.943  17.138   6.707  1.00  0.00              
ATOM     69  CA  PRO    69      37.169  14.173   8.387  1.00  0.00              
ATOM     70  CA  LEU    70      39.782  13.195  10.902  1.00  0.00              
ATOM     71  CA  GLU    71      41.845  10.207  11.408  1.00  0.00              
ATOM     72  CA  ILE    72      44.524  10.479  13.957  1.00  0.00              
ATOM     73  CA  LEU    73      47.244   8.129  14.036  1.00  0.00              
ATOM     74  CA  SER    74      49.488   8.233  16.959  1.00  0.00              
ATOM     75  CA  LEU    75      52.785   6.408  16.887  1.00  0.00              
ATOM     76  CA  SER    76      54.733   6.039  20.033  1.00  0.00              
ATOM     77  CA  GLY    77      58.276   4.848  19.786  1.00  0.00              
ATOM     78  CA  ASN    78      60.120   3.814  22.867  1.00  0.00              
ATOM     79  CA  VAL    79      63.691   3.051  22.752  1.00  0.00              
ATOM     80  CA  SER    80      65.261   1.365  25.722  1.00  0.00              
ATOM     81  CA  MET    81      68.874   0.197  25.766  1.00  0.00              
ATOM     82  CA  LYS    82      69.442  -2.968  27.735  1.00  0.00              
ATOM     83  CA  ASP    83      72.454  -4.554  26.119  1.00  0.00              
ATOM     84  CA  SER    84      70.686  -6.053  23.148  1.00  0.00              
ATOM     85  CA  LYS    85      68.762  -3.123  21.806  1.00  0.00              
ATOM     86  CA  PRO    86      65.354  -2.610  23.275  1.00  0.00              
ATOM     87  CA  PHE    87      62.876  -1.206  20.943  1.00  0.00              
ATOM     88  CA  CYS    88      59.265  -0.723  21.858  1.00  0.00              
ATOM     89  CA  HIS    89      56.787   0.448  19.224  1.00  0.00              
ATOM     90  CA  ILE    90      53.368   1.596  20.232  1.00  0.00              
ATOM     91  CA  HIS    91      50.667   2.177  17.689  1.00  0.00              
ATOM     92  CA  VAL    92      47.644   4.240  18.767  1.00  0.00              
ATOM     93  CA  LEU    93      44.631   4.718  16.487  1.00  0.00              
ATOM     94  CA  LEU    94      42.354   7.638  17.033  1.00  0.00              
ATOM     95  CA  GLY    95      39.042   7.910  15.171  1.00  0.00              
ATOM     96  CA  LYS    96      37.611  11.343  14.221  1.00  0.00              
ATOM     97  CA  ASP    97      35.220  11.294  17.145  1.00  0.00              
ATOM     98  CA  GLY    98      37.993  10.825  19.749  1.00  0.00              
ATOM     99  CA  GLU    99      37.518   7.200  20.492  1.00  0.00              
ATOM    100  CA  VAL   100      40.798   5.642  21.055  1.00  0.00              
ATOM    101  CA  TYR   101      41.430   2.255  19.713  1.00  0.00              
ATOM    102  CA  GLY   102      44.415   0.197  20.961  1.00  0.00              
ATOM    103  CA  GLY   103      45.090  -3.338  19.594  1.00  0.00              
ATOM    104  CA  HIS   104      47.017  -5.013  22.199  1.00  0.00              
ATOM    105  CA  LEU   105      46.626  -8.660  21.343  1.00  0.00              
ATOM    106  CA  PHE   106      47.583  -8.582  17.642  1.00  0.00              
ATOM    107  CA  SER   107      50.656  -6.444  18.132  1.00  0.00              
ATOM    108  CA  ALA   108      52.374  -7.968  21.221  1.00  0.00              
ATOM    109  CA  GLU   109      52.019 -11.344  19.479  1.00  0.00              
ATOM    110  CA  VAL   110      53.549 -10.782  15.976  1.00  0.00              
ATOM    111  CA  PHE   111      56.864  -9.039  16.849  1.00  0.00              
ATOM    112  CA  ALA   112      58.100 -10.278  20.104  1.00  0.00              
ATOM    113  CA  CYS   113      61.708  -9.564  20.891  1.00  0.00              
ATOM    114  CA  GLU   114      61.158  -5.934  19.900  1.00  0.00              
ATOM    115  CA  VAL   115      57.762  -5.313  21.419  1.00  0.00              
ATOM    116  CA  PHE   116      55.193  -4.307  19.021  1.00  0.00              
ATOM    117  CA  VAL   117      51.822  -3.066  20.181  1.00  0.00              
ATOM    118  CA  LEU   118      49.316  -2.433  17.376  1.00  0.00              
ATOM    119  CA  PRO   119      46.335  -0.180  17.146  1.00  0.00              
ATOM    120  CA  LEU   120      43.254  -2.111  15.926  1.00  0.00              
ATOM    121  CA  SER   121      40.194  -0.473  14.792  1.00  0.00              
ATOM    122  CA  GLY   122      37.352  -2.870  15.363  1.00  0.00              
ATOM    123  CA  GLU   123      39.168  -6.190  14.683  1.00  0.00              
ATOM    124  CA  ALA   124      39.428  -8.861  17.357  1.00  0.00              
ATOM    125  CA  PRO   125      43.156  -9.464  17.996  1.00  0.00              
ATOM    126  CA  GLU   126      43.396 -13.169  17.268  1.00  0.00              
ATOM    127  CA  ARG   127      41.334 -12.616  14.070  1.00  0.00              
ATOM    128  CA  ALA   128      43.359  -9.747  12.757  1.00  0.00              
ATOM    129  CA  PHE   129      46.802 -11.360  13.150  1.00  0.00              
ATOM    130  CA  ASP   130      46.182 -14.911  11.896  1.00  0.00              
ATOM    131  CA  GLU   131      46.044 -16.793  15.139  1.00  0.00              
ATOM    132  CA  GLN   132      47.900 -19.810  13.860  1.00  0.00              
ATOM    133  CA  THR   133      50.852 -17.878  12.317  1.00  0.00              
ATOM    134  CA  GLY   134      50.967 -15.730  15.380  1.00  0.00              
ATOM    135  CA  LEU   135      54.372 -16.444  16.733  1.00  0.00              
ATOM    136  CA  PHE   136      56.042 -13.398  18.138  1.00  0.00              
ATOM    137  CA  LEU   137      59.843 -13.318  17.803  1.00  0.00              
ATOM    138  CA  TRP   138      61.383 -10.028  16.779  1.00  0.00              
ATOM    139  CA  LEU   139      65.177 -10.465  16.661  1.00  0.00              
ATOM    140  CA  GLU   140      64.989 -13.850  14.941  1.00  0.00              
ATOM    141  CA  HIS   141      62.455 -12.647  12.366  1.00  0.00              
ATOM    142  CA  HIS   142      64.332  -9.559  11.320  1.00  0.00              
ATOM    143  CA  HIS   143      67.706 -11.201  11.322  1.00  0.00              
ATOM    144  CA  HIS   144      66.538 -14.605   9.702  1.00  0.00              
ATOM    145  CA  HIS   145      69.855 -12.162  10.524  1.00  0.00              
ATOM    146  CA  HIS   146      69.151  -8.477  11.618  1.00  0.00              
TER                                                                             
END
