
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  149 (  149),  selected  149 , name T0317TS168_4-D1
# Molecule2: number of CA atoms  149 ( 1129),  selected  149 , name T0317_D1.pdb
# PARAMETERS: T0317TS168_4-D1.T0317_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   144        10 - 153         4.75     6.07
  LONGEST_CONTINUOUS_SEGMENT:   144        11 - 154         4.71     6.01
  LONGEST_CONTINUOUS_SEGMENT:   144        12 - 155         4.84     5.97
  LCS_AVERAGE:     95.61

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    66        69 - 134         1.98     6.52
  LCS_AVERAGE:     27.90

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    23        91 - 113         0.99     6.48
  LCS_AVERAGE:      8.62

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  149
LCS_GDT     P      10     P      10      3    5  144     0    0    3    5    6    6    8    8   12   14   17   24   26   30   42   49   54   57   74   77 
LCS_GDT     F      11     F      11      4    5  144     2    4    4    5    6    6    8   13   19   20   30   34   39   44   64   66  100  106  116  125 
LCS_GDT     A      12     A      12      4    5  144     3    4    4    5    6    6   12   20   32   39   50   55   69   79   97  109  124  129  133  134 
LCS_GDT     R      13     R      13      4    5  144     3    4    4    5    5    6    8    9   14   39   43   55   68   86  102  109  128  129  134  138 
LCS_GDT     V      14     V      14      4    5  144     3    4    5    5    6    6    8   24   27   36   51   73   96  117  128  132  134  137  138  138 
LCS_GDT     A      15     A      15      4    8  144     3    4   14   21   39   68  108  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     P      16     P      16      5   29  144     3    7   29   58   85  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     A      17     A      17      5   29  144     3    7   27   44   79   99  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     L      18     L      18      5   29  144     3    7   20   51   83  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     F      19     F      19      5   29  144     3   13   44   72   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     I      20     I      20      5   29  144     4   29   52   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     G      21     G      21      5   29  144    10   19   50   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     N      22     N      22      5   29  144     3   21   50   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     A      23     A      23      7   29  144     3    7   14   22   41   72  102  118  122  127  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     R      24     R      24      7   29  144     3    7   16   35   67   95  110  118  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     A      25     A      25      7   29  144     3   10   25   47   80  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     A      26     A      26      7   29  144     3   10   31   55   84  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     G      27     G      27     15   29  144     3   20   47   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     A      28     A      28     15   29  144     6   30   52   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     T      29     T      29     15   29  144     6   31   52   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     E      30     E      30     15   29  144     9   31   52   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     L      31     L      31     15   29  144     7   31   52   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     L      32     L      32     15   29  144    14   31   52   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     V      33     V      33     15   29  144    14   31   52   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     R      34     R      34     15   29  144    14   31   52   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     A      35     A      35     15   29  144    13   29   50   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     G      36     G      36     15   29  144     7   31   52   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     I      37     I      37     15   29  144    12   24   52   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     T      38     T      38     15   29  144     4   28   52   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     L      39     L      39     15   29  144     4   25   52   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     C      40     C      40     15   29  144     8   25   52   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     V      41     V      41     15   29  144    10   29   52   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     N      42     N      42     15   29  144     7   29   50   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     V      43     V      43     15   29  144     4   19   48   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     S      44     S      44      6   29  144     4   18   46   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     R      45     R      45      5   29  144     7   24   50   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     Q      46     Q      46      5   29  144     6   31   52   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     Q      47     Q      47      5   25  144     3    4   25   49   79   97  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     P      48     P      48      5   25  144     3    4    9   29   78   97  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     G      49     G      49      5   25  144     3    4    6    6   19   62   88  115  124  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     P      50     P      50      6   16  144     3    6   12   22   42   59   81  105  119  128  128  131  132  132  134  136  136  137  138  138 
LCS_GDT     R      51     R      51      6   16  144     3   14   32   56   83   97  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     A      52     A      52     10   15  144     4   14   42   57   77   97  110  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     P      53     P      53     10   15  144     4   29   42   74   86   97  112  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     G      54     G      54     10   15  144     4   24   44   74   89   99  112  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     V      55     V      55     10   15  144     5   25   48   74   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     A      56     A      56     10   15  144     8   29   48   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     E      57     E      57     10   15  144    10   29   48   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     L      58     L      58     10   15  144     5   29   50   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     R      59     R      59     10   15  144    17   29   44   72   89   99  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     V      60     V      60     10   15  144    17   29   51   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     P      61     P      61     10   15  144     8   25   46   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     V      62     V      62      8   15  144    17   25   50   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     F      63     F      63      3   15  144     8   29   47   74   89   99  110  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     D      64     D      64      3    6  144     3    6    7   12   37   49   63   74   96  110  114  119  127  131  134  136  136  137  138  138 
LCS_GDT     D      65     D      65      3    6  144     3    3   20   31   59   69   91  105  110  114  120  127  130  132  134  136  136  137  138  138 
LCS_GDT     P      66     P      66      3    6  144     3    3    4   11   23   66   95  106  110  114  120  126  131  132  134  136  136  137  138  138 
LCS_GDT     A      67     A      67      3    6  144     3    3    4   11   15   28   41   78   93  111  116  120  124  132  134  136  136  137  138  138 
LCS_GDT     E      68     E      68      3   64  144     3    3    4    9   10   18   45   75   92  106  114  119  124  131  134  136  136  137  138  138 
LCS_GDT     D      69     D      69      7   66  144     3    8   43   71   88   97  106  116  124  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     L      70     L      70      9   66  144     8   29   52   76   89   99  112  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     L      71     L      71     17   66  144     7   29   52   74   89   99  112  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     T      72     T      72     17   66  144     5   13   47   71   89   99  112  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     H      73     H      73     17   66  144     6   20   50   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     L      74     L      74     17   66  144     5   26   52   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     E      75     E      75     17   66  144    11   29   52   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     P      76     P      76     17   66  144    11   14   22   69   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     T      77     T      77     17   66  144    11   14   30   71   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     C      78     C      78     17   66  144    11   31   52   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     A      79     A      79     17   66  144    11   30   52   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     A      80     A      80     17   66  144    11   24   52   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     M      81     M      81     17   66  144    11   27   52   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     E      82     E      82     17   66  144    11   19   49   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     A      83     A      83     17   66  144    11   27   51   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     A      84     A      84     17   66  144    14   31   52   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     V      85     V      85     17   66  144    11   14   43   70   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     R      86     R      86     17   66  144     8   14   35   60   87   97  112  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     D      87     D      87     17   66  144     6   30   52   76   89   99  112  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     G      88     G      88     17   66  144     8   30   52   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     G      89     G      89     17   66  144     3   23   49   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     S      90     S      90     12   66  144     3   23   50   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     C      91     C      91     23   66  144    10   31   52   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     L      92     L      92     23   66  144     8   31   52   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     V      93     V      93     23   66  144    11   31   52   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     Y      94     Y      94     23   66  144     8   31   52   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     C      95     C      95     23   66  144     4   17   44   71   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     K      96     K      96     23   66  144     6   31   52   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     N      97     N      97     23   66  144     4   31   52   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     G      98     G      98     23   66  144     5   29   52   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     R      99     R      99     23   66  144     3   17   30   62   87  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     S     100     S     100     23   66  144     3   19   46   71   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     R     101     R     101     23   66  144    14   31   52   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     S     102     S     102     23   66  144    13   31   52   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     A     103     A     103     23   66  144    13   30   52   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     A     104     A     104     23   66  144    13   31   52   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     V     105     V     105     23   66  144    14   31   52   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     C     106     C     106     23   66  144    14   31   52   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     T     107     T     107     23   66  144    17   31   52   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     A     108     A     108     23   66  144    14   31   52   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     Y     109     Y     109     23   66  144    14   31   52   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     L     110     L     110     23   66  144    14   31   52   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     M     111     M     111     23   66  144    14   31   52   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     R     112     R     112     23   66  144    14   31   52   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     H     113     H     113     23   66  144     4   27   50   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     R     114     R     114     17   66  144     3    8   18   39   73   99  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     G     115     G     115     17   66  144     3    8   18   42   80   99  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     H     116     H     116     13   66  144     3    8   29   65   89   99  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     S     117     S     117     13   66  144     9   30   52   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     L     118     L     118     13   66  144     9   30   52   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     D     119     D     119     13   66  144    10   31   52   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     R     120     R     120     13   66  144    14   31   52   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     A     121     A     121     13   66  144    14   31   52   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     F     122     F     122     13   66  144    10   29   52   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     Q     123     Q     123     13   66  144    11   31   52   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     M     124     M     124     13   66  144    10   29   52   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     V     125     V     125     13   66  144    10   24   50   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     K     126     K     126     13   66  144    10   24   50   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     S     127     S     127     13   66  144    10   29   52   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     A     128     A     128     13   66  144    10   29   50   74   89   99  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     R     129     R     129      4   66  144     4   13   47   76   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     P     130     P     130      4   66  144     3    7   24   49   79  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     V     131     V     131      4   66  144     4    7   24   56   83  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     A     132     A     132      4   66  144     4    9   28   64   87  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     E     133     E     133      3   66  144     4   17   44   75   89  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     P     134     P     134      4   66  144     3    3    4    7   24   53   71  104  119  124  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     N     135     N     135     16   30  144     3    6   13   39   62   82  110  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     L     136     L     136     16   30  144    10   23   30   47   75  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     G     137     G     137     16   30  144    14   23   30   47   77  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     F     138     F     138     16   30  144    17   23   30   52   80  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     W     139     W     139     16   30  144    17   23   30   51   80  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     A     140     A     140     16   30  144    17   23   30   47   75  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     Q     141     Q     141     16   30  144    17   23   30   50   80  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     L     142     L     142     16   30  144    17   23   30   62   83  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     Q     143     Q     143     16   30  144    17   23   30   50   79  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     K     144     K     144     16   30  144    17   23   30   47   76   99  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     Y     145     Y     145     16   30  144    17   23   30   51   79  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     E     146     E     146     16   30  144    17   23   30   58   80  100  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     Q     147     Q     147     16   30  144    17   23   30   47   77   96  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     T     148     T     148     16   30  144    17   23   30   45   67   94  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     L     149     L     149     16   30  144    17   23   30   47   77   96  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     Q     150     Q     150     16   30  144    17   23   30   45   77   96  113  120  125  128  129  131  132  132  134  136  136  137  138  138 
LCS_GDT     A     151     A     151     16   24  144     0    3    5   17   29   62   74   84  109  118  128  131  132  132  134  135  136  137  138  138 
LCS_GDT     Q     152     Q     152      3    4  144     0    3    5    5    9   15   23   31   40   53   68   80   91  104  121  128  131  135  136  136 
LCS_GDT     A     153     A     153      3    4  144     0    3    4    4    5    8   11   14   17   29   38   47   55   69   81   92  115  120  124  129 
LCS_GDT     I     154     I     154      3    4  144     3    3    4    4    5    6    8    9   13   15   19   21   23   29   34   40   49   61   73   86 
LCS_GDT     L     155     L     155      4    4  144     3    4    4    5    5    6    7    7    8    8   14   20   22   23   28   33   44   47   57   71 
LCS_GDT     P     156     P     156      4    4  143     3    4    4    5    5    6    7    7    8    8   10   20   23   30   38   42   53   61   71   84 
LCS_GDT     R     157     R     157      4    4   30     3    4    4    5    5    6    9    9   12   28   34   44   51   58   81   85   90   98  111  129 
LCS_GDT     E     158     E     158      4    4   30     0    4    4    5    5    6   15   23   28   34   41   51   58   69   81   89   99  108  124  129 
LCS_AVERAGE  LCS_A:  44.04  (   8.62   27.90   95.61 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     17     31     52     76     89    100    113    120    125    128    129    131    132    132    134    136    136    137    138    138 
GDT PERCENT_CA  11.41  20.81  34.90  51.01  59.73  67.11  75.84  80.54  83.89  85.91  86.58  87.92  88.59  88.59  89.93  91.28  91.28  91.95  92.62  92.62
GDT RMS_LOCAL    7.67   0.67   1.01   1.35   1.53   1.99   2.24   2.30   2.43   2.51   2.55   2.65   2.74   2.74   2.91   3.12   3.12   3.20   3.31   3.31
GDT RMS_ALL_CA   7.51   6.58   6.65   6.54   6.57   6.21   6.11   6.21   6.17   6.18   6.18   6.17   6.14   6.14   6.16   6.25   6.25   6.21   6.22   6.22

#      Molecule1      Molecule2       DISTANCE
LGA    P      10      P      10         23.318
LGA    F      11      F      11         17.183
LGA    A      12      A      12         14.253
LGA    R      13      R      13         12.718
LGA    V      14      V      14         10.242
LGA    A      15      A      15          4.154
LGA    P      16      P      16          2.680
LGA    A      17      A      17          3.019
LGA    L      18      L      18          2.865
LGA    F      19      F      19          2.680
LGA    I      20      I      20          1.757
LGA    G      21      G      21          1.654
LGA    N      22      N      22          1.354
LGA    A      23      A      23          5.748
LGA    R      24      R      24          4.930
LGA    A      25      A      25          3.461
LGA    A      26      A      26          3.458
LGA    G      27      G      27          2.448
LGA    A      28      A      28          1.237
LGA    T      29      T      29          1.329
LGA    E      30      E      30          1.641
LGA    L      31      L      31          1.260
LGA    L      32      L      32          0.586
LGA    V      33      V      33          1.317
LGA    R      34      R      34          1.266
LGA    A      35      A      35          1.152
LGA    G      36      G      36          0.218
LGA    I      37      I      37          0.902
LGA    T      38      T      38          1.158
LGA    L      39      L      39          1.022
LGA    C      40      C      40          1.580
LGA    V      41      V      41          1.260
LGA    N      42      N      42          2.243
LGA    V      43      V      43          1.324
LGA    S      44      S      44          1.414
LGA    R      45      R      45          2.077
LGA    Q      46      Q      46          1.073
LGA    Q      47      Q      47          3.245
LGA    P      48      P      48          3.117
LGA    G      49      G      49          4.894
LGA    P      50      P      50          6.176
LGA    R      51      R      51          3.274
LGA    A      52      A      52          3.691
LGA    P      53      P      53          3.525
LGA    G      54      G      54          3.166
LGA    V      55      V      55          2.052
LGA    A      56      A      56          1.656
LGA    E      57      E      57          1.593
LGA    L      58      L      58          1.790
LGA    R      59      R      59          2.887
LGA    V      60      V      60          1.907
LGA    P      61      P      61          2.203
LGA    V      62      V      62          0.074
LGA    F      63      F      63          3.994
LGA    D      64      D      64          9.995
LGA    D      65      D      65          8.804
LGA    P      66      P      66          8.579
LGA    A      67      A      67          9.818
LGA    E      68      E      68         10.745
LGA    D      69      D      69          5.280
LGA    L      70      L      70          3.196
LGA    L      71      L      71          4.024
LGA    T      72      T      72          3.965
LGA    H      73      H      73          1.948
LGA    L      74      L      74          1.745
LGA    E      75      E      75          2.171
LGA    P      76      P      76          2.442
LGA    T      77      T      77          2.332
LGA    C      78      C      78          2.294
LGA    A      79      A      79          2.337
LGA    A      80      A      80          2.022
LGA    M      81      M      81          2.183
LGA    E      82      E      82          2.733
LGA    A      83      A      83          2.539
LGA    A      84      A      84          1.688
LGA    V      85      V      85          2.595
LGA    R      86      R      86          3.698
LGA    D      87      D      87          2.997
LGA    G      88      G      88          2.122
LGA    G      89      G      89          1.886
LGA    S      90      S      90          1.612
LGA    C      91      C      91          0.619
LGA    L      92      L      92          0.745
LGA    V      93      V      93          0.737
LGA    Y      94      Y      94          0.784
LGA    C      95      C      95          1.971
LGA    K      96      K      96          0.863
LGA    N      97      N      97          1.667
LGA    G      98      G      98          1.275
LGA    R      99      R      99          2.863
LGA    S     100      S     100          2.279
LGA    R     101      R     101          1.890
LGA    S     102      S     102          1.989
LGA    A     103      A     103          1.868
LGA    A     104      A     104          1.631
LGA    V     105      V     105          1.692
LGA    C     106      C     106          1.520
LGA    T     107      T     107          1.551
LGA    A     108      A     108          1.612
LGA    Y     109      Y     109          1.529
LGA    L     110      L     110          1.289
LGA    M     111      M     111          1.313
LGA    R     112      R     112          1.620
LGA    H     113      H     113          1.493
LGA    R     114      R     114          3.734
LGA    G     115      G     115          3.598
LGA    H     116      H     116          3.439
LGA    S     117      S     117          2.942
LGA    L     118      L     118          2.795
LGA    D     119      D     119          2.663
LGA    R     120      R     120          1.507
LGA    A     121      A     121          0.983
LGA    F     122      F     122          2.040
LGA    Q     123      Q     123          1.940
LGA    M     124      M     124          1.506
LGA    V     125      V     125          2.333
LGA    K     126      K     126          2.765
LGA    S     127      S     127          2.446
LGA    A     128      A     128          2.990
LGA    R     129      R     129          1.034
LGA    P     130      P     130          2.439
LGA    V     131      V     131          3.066
LGA    A     132      A     132          1.808
LGA    E     133      E     133          1.313
LGA    P     134      P     134          6.160
LGA    N     135      N     135          4.557
LGA    L     136      L     136          3.535
LGA    G     137      G     137          3.322
LGA    F     138      F     138          2.653
LGA    W     139      W     139          2.629
LGA    A     140      A     140          3.321
LGA    Q     141      Q     141          2.768
LGA    L     142      L     142          1.836
LGA    Q     143      Q     143          2.751
LGA    K     144      K     144          3.542
LGA    Y     145      Y     145          2.740
LGA    E     146      E     146          2.274
LGA    Q     147      Q     147          3.874
LGA    T     148      T     148          4.483
LGA    L     149      L     149          3.850
LGA    Q     150      Q     150          4.045
LGA    A     151      A     151          8.053
LGA    Q     152      Q     152         14.513
LGA    A     153      A     153         18.602
LGA    I     154      I     154         22.236
LGA    L     155      L     155         22.669
LGA    P     156      P     156         23.872
LGA    R     157      R     157         19.330
LGA    E     158      E     158         18.768

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  149  149    4.0    120    2.30    60.906    56.770     4.991

LGA_LOCAL      RMSD =  2.304  Number of atoms =  120  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  6.142  Number of atoms =  149 
Std_ALL_ATOMS  RMSD =  5.908  (standard rmsd on all 149 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.377388 * X  +   0.061086 * Y  +  -0.924038 * Z  +  31.286545
  Y_new =  -0.874319 * X  +   0.305347 * Y  +   0.377267 * Z  +  31.269636
  Z_new =   0.305198 * X  +   0.950280 * Y  +  -0.061826 * Z  +   6.055162 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   1.635765   -1.505827  [ DEG:    93.7225    -86.2775 ]
  Theta =  -0.310146   -2.831447  [ DEG:   -17.7701   -162.2299 ]
  Phi   =  -1.978275    1.163318  [ DEG:  -113.3468     66.6532 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0317TS168_4-D1                               
REMARK     2: T0317_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0317TS168_4-D1.T0317_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  149  149   4.0  120   2.30  56.770     5.91
REMARK  ---------------------------------------------------------- 
MOLECULE T0317TS168_4-D1
PFRMAT TS
TARGET T0317
MODEL 4
PARENT N/A
ATOM     10  CA  PRO    10      36.255  38.993 -16.462  1.00 25.00           C
ATOM     11  CA  PHE    11      35.084  36.564 -13.786  1.00 25.00           C
ATOM     12  CA  ALA    12      38.685  35.723 -12.749  1.00 25.00           C
ATOM     13  CA  ARG    13      42.142  34.325 -11.926  1.00 25.00           C
ATOM     14  CA  VAL    14      41.477  33.392  -8.301  1.00 25.00           C
ATOM     15  CA  ALA    15      39.975  33.539  -4.861  1.00 25.00           C
ATOM     16  CA  PRO    16      39.343  32.262  -1.375  1.00 25.00           C
ATOM     17  CA  ALA    17      38.361  29.011   0.342  1.00 25.00           C
ATOM     18  CA  LEU    18      35.539  29.498   2.847  1.00 25.00           C
ATOM     19  CA  PHE    19      32.270  27.885   1.942  1.00 25.00           C
ATOM     20  CA  ILE    20      28.443  27.593   2.190  1.00 25.00           C
ATOM     21  CA  GLY    21      28.040  24.469   0.013  1.00 25.00           C
ATOM     22  CA  ASN    22      24.530  22.954   0.456  1.00 25.00           C
ATOM     23  CA  ALA    23      21.413  23.266  -1.650  1.00 25.00           C
ATOM     24  CA  ARG    24      22.438  21.279  -4.796  1.00 25.00           C
ATOM     25  CA  ALA    25      25.919  19.719  -4.382  1.00 25.00           C
ATOM     26  CA  ALA    26      26.497  18.275  -0.972  1.00 25.00           C
ATOM     27  CA  GLY    27      24.295  15.212  -1.723  1.00 25.00           C
ATOM     28  CA  ALA    28      26.435  14.460  -4.775  1.00 25.00           C
ATOM     29  CA  THR    29      30.013  13.755  -3.690  1.00 25.00           C
ATOM     30  CA  GLU    30      30.896  14.341  -7.370  1.00 25.00           C
ATOM     31  CA  LEU    31      31.219  18.101  -6.720  1.00 25.00           C
ATOM     32  CA  LEU    32      33.502  17.412  -3.723  1.00 25.00           C
ATOM     33  CA  VAL    33      35.663  15.092  -5.871  1.00 25.00           C
ATOM     34  CA  ARG    34      35.908  17.789  -8.579  1.00 25.00           C
ATOM     35  CA  ALA    35      37.575  20.488  -6.586  1.00 25.00           C
ATOM     36  CA  GLY    36      39.159  18.603  -3.711  1.00 25.00           C
ATOM     37  CA  ILE    37      37.815  18.732  -0.125  1.00 25.00           C
ATOM     38  CA  THR    38      38.145  16.410   2.892  1.00 25.00           C
ATOM     39  CA  LEU    39      37.369  18.857   5.776  1.00 25.00           C
ATOM     40  CA  CYS    40      33.686  19.422   6.588  1.00 25.00           C
ATOM     41  CA  VAL    41      31.489  21.041   9.240  1.00 25.00           C
ATOM     42  CA  ASN    42      28.130  20.498  10.893  1.00 25.00           C
ATOM     43  CA  VAL    43      25.322  23.051  11.310  1.00 25.00           C
ATOM     44  CA  SER    44      21.927  21.585  12.134  1.00 25.00           C
ATOM     45  CA  ARG    45      23.478  18.234  13.115  1.00 25.00           C
ATOM     46  CA  GLN    46      20.586  15.788  12.417  1.00 25.00           C
ATOM     47  CA  GLN    47      21.684  14.116   9.141  1.00 25.00           C
ATOM     48  CA  PRO    48      22.128  11.393   6.507  1.00 25.00           C
ATOM     49  CA  GLY    49      25.529   9.689   7.056  1.00 25.00           C
ATOM     50  CA  PRO    50      29.059   9.755   8.470  1.00 25.00           C
ATOM     51  CA  ARG    51      30.776   8.008   5.550  1.00 25.00           C
ATOM     52  CA  ALA    52      30.352  10.620   2.858  1.00 25.00           C
ATOM     53  CA  PRO    53      32.995   8.929   0.779  1.00 25.00           C
ATOM     54  CA  GLY    54      36.176  10.989   0.785  1.00 25.00           C
ATOM     55  CA  VAL    55      35.084  12.485   4.069  1.00 25.00           C
ATOM     56  CA  ALA    56      34.971  13.759   7.694  1.00 25.00           C
ATOM     57  CA  GLU    57      32.713  15.824  10.012  1.00 25.00           C
ATOM     58  CA  LEU    58      33.695  17.925  13.028  1.00 25.00           C
ATOM     59  CA  ARG    59      30.734  19.005  15.207  1.00 25.00           C
ATOM     60  CA  VAL    60      29.375  22.446  16.122  1.00 25.00           C
ATOM     61  CA  PRO    61      26.031  22.109  17.840  1.00 25.00           C
ATOM     62  CA  VAL    62      23.517  24.578  16.282  1.00 25.00           C
ATOM     63  CA  PHE    63      21.806  26.865  18.783  1.00 25.00           C
ATOM     64  CA  ASP    64      24.218  26.094  21.627  1.00 25.00           C
ATOM     65  CA  ASP    65      22.904  29.360  23.194  1.00 25.00           C
ATOM     66  CA  PRO    66      25.771  31.505  21.888  1.00 25.00           C
ATOM     67  CA  ALA    67      28.866  33.531  22.693  1.00 25.00           C
ATOM     68  CA  GLU    68      31.396  31.127  24.172  1.00 25.00           C
ATOM     69  CA  ASP    69      29.908  28.207  22.191  1.00 25.00           C
ATOM     70  CA  LEU    70      29.999  30.301  18.986  1.00 25.00           C
ATOM     71  CA  LEU    71      33.660  31.208  19.654  1.00 25.00           C
ATOM     72  CA  THR    72      34.500  27.511  20.202  1.00 25.00           C
ATOM     73  CA  HIS    73      32.752  26.602  16.918  1.00 25.00           C
ATOM     74  CA  LEU    74      34.723  29.327  15.086  1.00 25.00           C
ATOM     75  CA  GLU    75      37.991  28.003  16.580  1.00 25.00           C
ATOM     76  CA  PRO    76      37.089  24.451  15.468  1.00 25.00           C
ATOM     77  CA  THR    77      36.339  25.722  11.934  1.00 25.00           C
ATOM     78  CA  CYS    78      39.705  27.546  11.848  1.00 25.00           C
ATOM     79  CA  ALA    79      41.490  24.355  12.986  1.00 25.00           C
ATOM     80  CA  ALA    80      39.709  22.352  10.251  1.00 25.00           C
ATOM     81  CA  MET    81      40.746  24.952   7.637  1.00 25.00           C
ATOM     82  CA  GLU    82      44.372  24.764   8.855  1.00 25.00           C
ATOM     83  CA  ALA    83      44.279  20.943   8.620  1.00 25.00           C
ATOM     84  CA  ALA    84      42.889  21.171   5.060  1.00 25.00           C
ATOM     85  CA  VAL    85      45.669  23.627   4.104  1.00 25.00           C
ATOM     86  CA  ARG    86      48.298  21.259   5.572  1.00 25.00           C
ATOM     87  CA  ASP    87      47.831  19.344   2.333  1.00 25.00           C
ATOM     88  CA  GLY    88      45.106  20.205  -0.144  1.00 25.00           C
ATOM     89  CA  GLY    89      41.747  21.989   0.117  1.00 25.00           C
ATOM     90  CA  SER    90      38.529  23.953  -0.122  1.00 25.00           C
ATOM     91  CA  CYS    91      36.345  22.855   2.854  1.00 25.00           C
ATOM     92  CA  LEU    92      32.681  22.793   1.885  1.00 25.00           C
ATOM     93  CA  VAL    93      30.937  24.162   5.022  1.00 25.00           C
ATOM     94  CA  TYR    94      27.199  23.262   5.073  1.00 25.00           C
ATOM     95  CA  CYS    95      23.874  22.066   6.391  1.00 25.00           C
ATOM     96  CA  LYS    96      20.063  22.451   6.308  1.00 25.00           C
ATOM     97  CA  ASN    97      19.088  25.701   4.661  1.00 25.00           C
ATOM     98  CA  GLY    98      22.641  26.420   3.565  1.00 25.00           C
ATOM     99  CA  ARG    99      24.258  29.779   4.401  1.00 25.00           C
ATOM    100  CA  SER   100      23.178  29.695   8.080  1.00 25.00           C
ATOM    101  CA  ARG   101      25.867  28.600  10.577  1.00 25.00           C
ATOM    102  CA  SER   102      28.252  27.462   7.805  1.00 25.00           C
ATOM    103  CA  ALA   103      28.444  31.046   6.467  1.00 25.00           C
ATOM    104  CA  ALA   104      29.206  32.346   9.987  1.00 25.00           C
ATOM    105  CA  VAL   105      31.965  29.720  10.386  1.00 25.00           C
ATOM    106  CA  CYS   106      33.459  30.740   7.012  1.00 25.00           C
ATOM    107  CA  THR   107      33.395  34.421   8.068  1.00 25.00           C
ATOM    108  CA  ALA   108      35.138  33.530  11.360  1.00 25.00           C
ATOM    109  CA  TYR   109      37.810  31.568   9.444  1.00 25.00           C
ATOM    110  CA  LEU   110      38.354  34.548   7.102  1.00 25.00           C
ATOM    111  CA  MET   111      38.708  36.885  10.115  1.00 25.00           C
ATOM    112  CA  ARG   112      41.255  34.501  11.695  1.00 25.00           C
ATOM    113  CA  HIS   113      43.231  34.401   8.416  1.00 25.00           C
ATOM    114  CA  ARG   114      44.928  37.592   7.218  1.00 25.00           C
ATOM    115  CA  GLY   115      45.004  40.780   9.322  1.00 25.00           C
ATOM    116  CA  HIS   116      42.218  41.613   6.781  1.00 25.00           C
ATOM    117  CA  SER   117      39.408  42.244   9.290  1.00 25.00           C
ATOM    118  CA  LEU   118      35.790  41.156   9.873  1.00 25.00           C
ATOM    119  CA  ASP   119      33.872  43.736   7.791  1.00 25.00           C
ATOM    120  CA  ARG   120      35.457  42.364   4.586  1.00 25.00           C
ATOM    121  CA  ALA   121      34.479  38.802   5.597  1.00 25.00           C
ATOM    122  CA  PHE   122      30.888  39.952   6.268  1.00 25.00           C
ATOM    123  CA  GLN   123      30.767  41.656   2.841  1.00 25.00           C
ATOM    124  CA  MET   124      32.055  38.456   1.176  1.00 25.00           C
ATOM    125  CA  VAL   125      29.382  36.405   2.999  1.00 25.00           C
ATOM    126  CA  LYS   126      26.678  38.858   1.846  1.00 25.00           C
ATOM    127  CA  SER   127      27.943  38.600  -1.759  1.00 25.00           C
ATOM    128  CA  ALA   128      27.863  34.777  -1.538  1.00 25.00           C
ATOM    129  CA  ARG   129      24.925  32.997  -3.173  1.00 25.00           C
ATOM    130  CA  PRO   130      22.347  35.206  -4.888  1.00 25.00           C
ATOM    131  CA  VAL   131      21.237  36.856  -1.680  1.00 25.00           C
ATOM    132  CA  ALA   132      22.600  35.267   1.443  1.00 25.00           C
ATOM    133  CA  GLU   133      22.262  37.068   4.832  1.00 25.00           C
ATOM    134  CA  PRO   134      18.563  36.391   4.927  1.00 25.00           C
ATOM    135  CA  ASN   135      16.764  36.071   8.258  1.00 25.00           C
ATOM    136  CA  LEU   136      19.278  38.326  10.039  1.00 25.00           C
ATOM    137  CA  GLY   137      19.945  36.896  13.529  1.00 25.00           C
ATOM    138  CA  PHE   138      23.158  35.241  12.263  1.00 25.00           C
ATOM    139  CA  TRP   139      24.283  38.556  10.709  1.00 25.00           C
ATOM    140  CA  ALA   140      23.585  40.368  14.009  1.00 25.00           C
ATOM    141  CA  GLN   141      25.610  37.733  15.913  1.00 25.00           C
ATOM    142  CA  LEU   142      28.511  38.145  13.446  1.00 25.00           C
ATOM    143  CA  GLN   143      28.384  41.946  13.894  1.00 25.00           C
ATOM    144  CA  LYS   144      28.434  41.524  17.700  1.00 25.00           C
ATOM    145  CA  TYR   145      31.450  39.178  17.425  1.00 25.00           C
ATOM    146  CA  GLU   146      33.259  41.724  15.210  1.00 25.00           C
ATOM    147  CA  GLN   147      32.522  44.495  17.750  1.00 25.00           C
ATOM    148  CA  THR   148      33.875  42.295  20.579  1.00 25.00           C
ATOM    149  CA  LEU   149      37.048  41.598  18.552  1.00 25.00           C
ATOM    150  CA  GLN   150      37.500  45.349  17.922  1.00 25.00           C
ATOM    151  CA  ALA   151      36.667  48.846  18.941  1.00 25.00           C
ATOM    152  CA  GLN   152      34.536  50.947  21.250  1.00 25.00           C
ATOM    153  CA  ALA   153      31.350  52.979  21.135  1.00 25.00           C
ATOM    154  CA  ILE   154      29.582  55.350  18.695  1.00 25.00           C
ATOM    155  CA  LEU   155      25.968  56.257  19.401  1.00 25.00           C
ATOM    156  CA  PRO   156      23.335  57.833  17.153  1.00 25.00           C
ATOM    157  CA  ARG   157      23.588  56.252  13.762  1.00 25.00           C
ATOM    158  CA  GLU   158      24.693  58.355  10.852  1.00 25.00           C
TER
END
