
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  135 (  135),  selected  135 , name T0319TS168_2
# Molecule2: number of CA atoms  135 ( 1055),  selected  135 , name T0319.pdb
# PARAMETERS: T0319TS168_2.T0319.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    27        82 - 108         4.77    16.22
  LONGEST_CONTINUOUS_SEGMENT:    27        83 - 109         4.63    15.76
  LONGEST_CONTINUOUS_SEGMENT:    27        84 - 110         4.54    15.61
  LCS_AVERAGE:     17.05

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    21        85 - 105         1.95    16.82
  LONGEST_CONTINUOUS_SEGMENT:    21        86 - 106         1.88    16.69
  LCS_AVERAGE:      7.84

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    16        86 - 101         0.66    16.86
  LCS_AVERAGE:      4.75

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  135
LCS_GDT     M       1     M       1      4    5   15     0    3    4    4    5   10   21   27   30   36   39   43   45   49   51   53   58   64   69   70 
LCS_GDT     K       2     K       2      4    5   15     3    3    5    6    8   12   14   24   30   33   38   42   45   49   51   53   61   64   69   70 
LCS_GDT     F       3     F       3      4    5   25     3    3    4    4    6   19   23   25   30   32   34   42   44   47   51   53   58   64   69   70 
LCS_GDT     L       4     L       4      4    7   25     3    3    4   17   18   23   24   27   32   36   40   43   46   49   51   53   61   64   69   70 
LCS_GDT     T       5     T       5      5    7   25     3    4    6    8   11   17   22   27   32   36   40   43   46   49   51   53   61   64   69   70 
LCS_GDT     T       6     T       6      5    7   25     3    4    6    8   12   17   21   26   32   36   40   43   46   49   51   53   61   64   69   70 
LCS_GDT     N       7     N       7      5    7   25     4    4    5    6    8   12   21   25   27   31   40   43   46   49   51   53   61   64   69   70 
LCS_GDT     F       8     F       8      5    7   25     4    4    5    6    8   12   14   17   18   20   24   29   32   37   41   47   61   64   69   70 
LCS_GDT     L       9     L       9      5    7   25     4    4   12   12   14   15   16   17   19   21   24   29   34   38   42   48   61   64   69   70 
LCS_GDT     K      10     K      10      5   10   25     4    4    6    8    9   15   16   17   18   20   25   28   34   38   42   47   58   61   67   70 
LCS_GDT     C      11     C      11      4   10   25     4    4    6    8    9   13   16   17   19   24   28   33   36   40   47   51   61   64   69   70 
LCS_GDT     S      12     S      12      5   10   25     4    4    6    8    9   12   14   17   18   21   26   32   34   38   42   47   61   64   69   70 
LCS_GDT     V      13     V      13      5   10   25     4    5    6    9   10   12   14   15   19   24   28   33   36   38   47   50   61   64   69   70 
LCS_GDT     K      14     K      14      5   10   25     4    5    6    8    9   10   11   15   16   19   23   33   36   40   47   51   61   64   69   70 
LCS_GDT     A      15     A      15      5   10   25     3    5    6    8    9   10   11   12   13   17   19   20   23   28   36   44   61   64   69   70 
LCS_GDT     C      16     C      16      5   10   25     3    5    6    8    9   10   11   13   19   21   24   27   32   39   43   49   61   64   69   70 
LCS_GDT     D      17     D      17      5   10   25     3    5    6    9   14   15   16   17   18   20   24   27   34   38   42   48   61   64   69   70 
LCS_GDT     T      18     T      18      4   10   25     3    3    6    9   14   15   16   17   19   21   24   29   35   39   42   48   54   60   69   70 
LCS_GDT     S      19     S      19      4   10   25     3    4    6    8   10   12   15   17   19   21   25   31   34   41   46   49   56   59   65   69 
LCS_GDT     N      20     N      20      4   10   25     3    4    6    9   10   12   14   15   16   19   25   31   34   38   46   49   56   59   63   66 
LCS_GDT     D      21     D      21      4   10   25     3    4    6    9   10   12   14   23   32   35   40   43   46   49   51   53   56   59   65   70 
LCS_GDT     N      22     N      22      4   10   25     3    4    6    9   10   12   14   18   25   32   40   43   46   49   51   53   61   64   69   70 
LCS_GDT     F      23     F      23      4   10   25     1    3    6    9   10   12   14   16   21   31   40   43   46   49   51   53   61   64   69   70 
LCS_GDT     P      24     P      24      4   10   25     3    3    6    9   10   12   14   24   32   36   40   43   46   49   51   53   61   64   69   70 
LCS_GDT     L      25     L      25      4   10   25     3    3    6    9   10   12   17   19   30   31   36   40   46   49   51   53   61   64   69   70 
LCS_GDT     Q      26     Q      26      4    8   25     3    3    5    7    8   12   17   26   30   34   36   41   46   49   51   53   61   64   69   70 
LCS_GDT     Y      27     Y      27      4    7   25     3    3    5    7    8   10   17   19   22   31   36   40   46   48   50   53   61   64   69   70 
LCS_GDT     D      28     D      28      4    7   24     1    3    4    7    9   10   13   15   19   22   25   30   34   43   48   52   61   64   69   70 
LCS_GDT     G      29     G      29      3   10   22     3    3    5    7    8   10   12   16   25   27   35   39   44   48   49   52   61   64   69   70 
LCS_GDT     S      30     S      30      4   11   18     3    3    4    7    8   11   13   14   16   20   25   30   35   40   47   50   61   64   69   70 
LCS_GDT     K      31     K      31      5   11   18     3    4    6    8   10   11   13   14   16   18   25   27   31   34   41   45   53   59   69   70 
LCS_GDT     C      32     C      32      5   11   18     3    4    6    8   10   11   13   14   16   18   22   26   34   38   42   48   61   64   69   70 
LCS_GDT     Q      33     Q      33      5   11   18     3    4    6    8   10   11   12   14   14   15   18   19   23   28   33   38   45   52   58   66 
LCS_GDT     L      34     L      34      5   11   18     3    4    6    8   10   11   12   14   14   15   18   20   24   29   33   39   47   52   60   68 
LCS_GDT     V      35     V      35      5   11   18     3    4    6    8   10   11   12   14   14   15   18   20   24   28   32   38   44   49   52   58 
LCS_GDT     Q      36     Q      36      4   11   18     3    4    6    8   10   11   12   14   14   15   18   19   23   26   31   35   44   48   50   53 
LCS_GDT     D      37     D      37      4   11   23     3    4    5    8   10   11   12   14   14   15   18   20   23   26   31   38   44   48   50   53 
LCS_GDT     E      38     E      38      3   11   24     3    3    6    8   10   11   12   14   14   16   19   20   24   26   31   35   44   48   50   52 
LCS_GDT     S      39     S      39      3   11   24     3    3    5    8   10   11   12   14   15   17   19   20   24   26   32   38   44   48   50   53 
LCS_GDT     I      40     I      40      3   11   24     3    3    6    7   10   11   12   12   15   17   20   23   26   34   38   46   49   53   63   69 
LCS_GDT     E      41     E      41      3   11   24     3    3    4    6   10   11   12   12   15   17   20   23   28   34   38   46   49   55   65   69 
LCS_GDT     F      42     F      42      3    5   24     1    4    4    6    6    7    9   11   14   17   22   25   31   34   42   47   55   61   67   70 
LCS_GDT     N      43     N      43      3   10   24     1    4    4    6    7    9   12   16   18   23   27   32   35   40   47   51   61   64   69   70 
LCS_GDT     P      44     P      44      9   10   24     9    9    9    9   10   10   11   15   19   21   25   29   34   40   47   51   61   64   69   70 
LCS_GDT     E      45     E      45      9   10   24     9    9    9    9   10   10   11   12   18   21   25   28   33   37   41   49   61   64   69   70 
LCS_GDT     F      46     F      46      9   10   24     9    9    9    9   10   13   13   16   22   27   36   37   42   45   50   53   61   64   69   70 
LCS_GDT     L      47     L      47      9   10   24     9    9    9   12   14   17   22   26   30   36   38   43   46   49   51   53   61   64   69   70 
LCS_GDT     L      48     L      48      9   10   24     9    9    9    9   10   13   21   22   26   31   36   40   46   49   51   53   61   64   69   70 
LCS_GDT     N      49     N      49      9   10   24     9    9    9    9   10   10   14   25   30   36   40   43   46   49   51   53   61   64   69   70 
LCS_GDT     I      50     I      50      9   10   24     9    9    9    9   20   23   24   27   32   36   40   43   46   49   51   53   61   64   69   70 
LCS_GDT     V      51     V      51      9   10   24     9    9    9   12   18   21   23   27   30   36   40   43   46   49   51   53   61   64   69   70 
LCS_GDT     D      52     D      52      9   10   24     9    9    9   18   21   23   24   27   32   36   40   43   46   49   51   53   61   64   69   70 
LCS_GDT     R      53     R      53      3   10   24     2    3    5    6   10   11   16   25   29   35   39   43   46   49   51   53   56   62   67   69 
LCS_GDT     V      54     V      54      3    6   24     3    3    7   12   18   21   24   27   32   36   40   43   46   49   51   53   61   64   69   70 
LCS_GDT     D      55     D      55      3   12   24     3    3    5    6    9   11   17   23   30   34   36   41   46   49   51   53   61   64   69   70 
LCS_GDT     W      56     W      56     11   12   24    11   11   12   12   14   15   23   27   32   36   40   43   46   49   51   53   61   64   69   70 
LCS_GDT     P      57     P      57     11   12   24    11   11   12   12   14   17   23   27   30   36   40   43   46   49   51   53   61   64   69   70 
LCS_GDT     A      58     A      58     11   12   24    11   11   12   12   15   17   23   27   32   36   40   43   46   49   51   53   61   64   69   70 
LCS_GDT     V      59     V      59     11   12   24    11   11   12   12   14   17   23   27   32   36   40   43   46   49   51   53   61   64   69   70 
LCS_GDT     L      60     L      60     11   12   24    11   11   12   12   14   15   19   26   30   34   36   41   46   49   51   53   61   64   69   70 
LCS_GDT     T      61     T      61     11   12   24    11   11   12   12   14   15   17   21   30   34   36   40   46   49   51   53   61   64   69   70 
LCS_GDT     V      62     V      62     11   12   24    11   11   12   12   14   15   16   21   24   26   36   36   41   45   49   52   61   64   69   70 
LCS_GDT     A      63     A      63     11   12   24    11   11   12   12   14   15   16   17   22   25   29   33   37   43   47   51   61   64   69   70 
LCS_GDT     A      64     A      64     11   12   24    11   11   12   12   14   15   16   17   22   22   25   29   34   39   42   49   54   60   69   70 
LCS_GDT     E      65     E      65     11   12   24    11   11   12   12   14   15   16   17   22   22   26   29   33   39   41   46   52   58   64   70 
LCS_GDT     L      66     L      66     11   12   24    11   11   12   12   14   15   16   17   19   21   25   27   32   37   41   45   52   58   62   68 
LCS_GDT     G      67     G      67      4   12   24     3    3    5    8   13   13   15   17   19   21   25   27   31   36   39   45   49   53   59   65 
LCS_GDT     N      68     N      68      4    7   24     3    3    4    5    7    8   10   13   18   20   22   27   28   31   36   39   44   49   50   60 
LCS_GDT     N      69     N      69      3    7   24     3    3    5    6    7    9   11   16   18   21   25   27   30   35   36   41   47   53   57   60 
LCS_GDT     A      70     A      70      4    7   24     3    4    5    6    7    9   10   13   18   20   25   27   30   35   36   39   44   49   50   54 
LCS_GDT     L      71     L      71      4    7   24     3    4    5    6    7    9   10   12   15   19   20   20   24   29   31   34   38   42   45   50 
LCS_GDT     P      72     P      72      4    7   23     3    4    5    6    7    9   10   12   15   19   20   20   21   23   25   31   35   45   55   61 
LCS_GDT     P      73     P      73      4    7   23     3    4    4    6    7    9   10   12   15   19   20   20   21   22   23   24   25   28   32   50 
LCS_GDT     T      74     T      74      3    7   23     3    4    4    5    7    9   10   12   15   19   20   20   21   22   23   24   27   30   39   51 
LCS_GDT     K      75     K      75      4    7   23     3    3    5    6    7    9   10   12   15   19   20   20   21   22   23   24   25   29   30   34 
LCS_GDT     P      76     P      76      4    8   23     3    3    4    5    8    9    9   11   13   17   20   20   21   23   24   25   27   29   30   33 
LCS_GDT     S      77     S      77      4    8   23     3    4    5    6    8    9    9   12   14   19   20   20   21   23   24   25   27   29   31   35 
LCS_GDT     F      78     F      78      4    8   23     3    4    4    6    8    9   10   12   15   19   20   20   21   23   24   25   28   35   41   47 
LCS_GDT     P      79     P      79      4    8   23     3    4    4    5    8    9    9   12   15   19   20   20   21   22   23   27   36   39   42   43 
LCS_GDT     S      80     S      80      4    8   23     3    4    4    6    8    9    9   12   15   19   20   20   21   24   26   30   35   38   41   43 
LCS_GDT     S      81     S      81      4    8   26     3    3    4    6    8    9    9   12   15   19   20   20   21   24   26   32   36   40   42   48 
LCS_GDT     I      82     I      82      4    8   27     3    4    4    6    8    9   10   12   15   19   20   20   24   26   32   36   41   48   55   59 
LCS_GDT     Q      83     Q      83      4    8   27     3    3    4    6    8    9   12   17   21   22   30   31   33   35   37   41   43   50   55   59 
LCS_GDT     E      84     E      84      3    7   27     3    4    4    5    6    9   17   25   29   31   34   38   41   44   45   48   51   54   58   63 
LCS_GDT     L      85     L      85      3   21   27     3    4    4    6    9   15   23   26   29   31   34   42   45   49   49   52   56   59   63   68 
LCS_GDT     T      86     T      86     16   21   27    14   15   15   18   21   23   24   27   32   35   40   43   45   49   51   53   56   59   63   68 
LCS_GDT     D      87     D      87     16   21   27    14   15   15   18   21   23   24   27   32   36   40   43   45   49   51   53   56   59   63   68 
LCS_GDT     D      88     D      88     16   21   27    14   15   15   18   21   23   24   27   32   36   40   43   45   49   51   53   56   59   63   68 
LCS_GDT     D      89     D      89     16   21   27    14   15   15   18   21   23   24   27   32   36   40   43   45   49   51   53   56   59   63   68 
LCS_GDT     M      90     M      90     16   21   27    14   15   15   18   21   23   24   27   32   36   40   43   46   49   51   53   56   59   63   68 
LCS_GDT     A      91     A      91     16   21   27    14   15   15   18   21   23   24   27   32   36   40   43   46   49   51   53   56   59   63   68 
LCS_GDT     I      92     I      92     16   21   27    14   15   15   18   21   23   24   27   32   36   40   43   46   49   51   53   56   59   63   68 
LCS_GDT     L      93     L      93     16   21   27    14   15   15   18   21   23   24   27   32   36   40   43   46   49   51   53   56   62   66   69 
LCS_GDT     N      94     N      94     16   21   27    14   15   15   18   21   23   24   27   32   36   40   43   46   49   51   53   56   62   67   69 
LCS_GDT     D      95     D      95     16   21   27    14   15   15   18   21   23   24   27   32   36   40   43   46   49   51   53   56   62   67   69 
LCS_GDT     L      96     L      96     16   21   27    14   15   15   18   21   23   24   27   32   36   40   43   46   49   51   53   61   64   69   70 
LCS_GDT     H      97     H      97     16   21   27    14   15   15   18   21   23   24   27   32   36   40   43   46   49   51   53   61   64   69   70 
LCS_GDT     T      98     T      98     16   21   27    14   15   15   17   21   23   24   27   32   36   40   43   46   49   51   53   61   64   69   70 
LCS_GDT     L      99     L      99     16   21   27    14   15   15   18   21   23   24   27   32   36   40   43   46   49   51   53   61   64   69   70 
LCS_GDT     L     100     L     100     16   21   27     4   15   15   18   21   23   24   27   32   36   40   43   46   49   51   53   61   64   69   70 
LCS_GDT     L     101     L     101     16   21   27     3    5   15   18   21   23   24   27   32   36   40   43   46   49   51   53   61   64   69   70 
LCS_GDT     Q     102     Q     102      7   21   27     3    5    9   18   21   23   24   27   30   36   40   43   46   49   51   53   61   64   69   70 
LCS_GDT     T     103     T     103      7   21   27     3    5   10   18   21   23   24   27   32   36   40   43   46   49   51   53   61   64   69   70 
LCS_GDT     S     104     S     104      7   21   27     3    5    9   16   21   23   24   27   32   36   40   43   46   49   51   53   61   64   69   70 
LCS_GDT     I     105     I     105      7   21   27     3    5    9   16   21   23   24   27   32   36   40   43   46   49   51   53   58   64   69   70 
LCS_GDT     A     106     A     106      4   21   27     3    4    6   12   16   20   24   27   32   36   40   43   46   49   51   53   61   64   69   70 
LCS_GDT     E     107     E     107      4   14   27     3    4    6    8   12   17   23   27   32   36   40   43   46   49   51   53   61   64   69   70 
LCS_GDT     G     108     G     108      4    6   27     3    4    5    7    9   12   18   22   27   32   40   43   46   49   51   53   61   64   69   70 
LCS_GDT     E     109     E     109      4    5   27     3    3    5    5    6    9   14   16   19   25   31   38   46   48   49   52   61   64   69   70 
LCS_GDT     M     110     M     110      4    6   27     3    3    5    5    6   10   13   16   19   22   25   31   35   39   47   52   61   64   69   70 
LCS_GDT     K     111     K     111      4    6   18     3    4    5    5    8   10   11   12   13   19   25   27   34   35   42   46   54   60   69   70 
LCS_GDT     C     112     C     112      3    6   18     0    3    4    5    7    9   14   15   17   19   21   23   26   31   37   43   49   57   63   68 
LCS_GDT     R     113     R     113      3    6   18     3    4    5    5    6    8   10   13   15   19   21   23   31   32   35   39   46   51   57   63 
LCS_GDT     N     114     N     114      3    6   18     3    4    5    5    6    8   10   13   15   18   19   20   26   31   35   37   40   46   50   53 
LCS_GDT     C     115     C     115      3    6   18     3    4    5    5    6    8   10   10   12   14   18   21   24   27   34   36   38   40   46   51 
LCS_GDT     G     116     G     116      3    5   18     3    3    4    4    6    7    8   11   12   18   19   21   24   27   34   36   38   43   47   52 
LCS_GDT     H     117     H     117      4    5   18     3    4    4    5    6    8   10   11   13   15   15   16   17   23   31   35   37   39   40   43 
LCS_GDT     I     118     I     118      4    5   18     3    3    4    5    7    7   10   11   13   15   16   27   30   33   36   38   44   47   50   57 
LCS_GDT     Y     119     Y     119      4    5   18     3    3    4    5    6    7   10   11   15   19   25   27   34   35   42   46   53   60   65   70 
LCS_GDT     Y     120     Y     120      4    5   18     0    3    4    5    6   10   13   16   19   22   25   31   35   39   46   52   61   64   69   70 
LCS_GDT     I     121     I     121      4    5   18     1    3    4    5    8   12   12   16   19   22   25   31   35   41   46   52   61   64   69   70 
LCS_GDT     K     122     K     122      4    5   18     0    3    4    5    8   12   12   15   19   21   25   31   35   39   46   52   58   61   69   70 
LCS_GDT     N     123     N     123      4    6   17     1    3    4    6    7    9   12   16   19   21   25   31   35   41   46   52   61   64   69   70 
LCS_GDT     G     124     G     124      3    7   16     3    3    4    5    8   10   12   13   16   17   18   19   21   30   35   43   50   54   59   68 
LCS_GDT     I     125     I     125      3    7   16     3    3    4    6    8   10   12   13   16   17   18   19   21   25   28   36   42   47   51   53 
LCS_GDT     P     126     P     126      3    7   16     3    3    4    6    8   10   12   13   16   17   18   19   21   25   27   28   30   38   46   51 
LCS_GDT     N     127     N     127      4    7   16     3    3    4    6    8   10   12   13   16   17   18   19   21   25   27   32   38   44   51   51 
LCS_GDT     L     128     L     128      4    7   16     3    3    4    5    8   10   12   13   16   17   18   19   21   25   27   28   30   33   41   46 
LCS_GDT     L     129     L     129      4    7   16     3    3    4    6    8   10   12   13   16   17   18   19   21   25   27   32   36   41   47   51 
LCS_GDT     L     130     L     130      5    7   16     3    4    5    5    7    9   11   12   14   17   18   19   21   25   27   28   30   33   35   37 
LCS_GDT     P     131     P     131      5    6   16     3    4    5    6    7    9   11   12   13   15   16   19   21   25   27   28   30   33   35   37 
LCS_GDT     P     132     P     132      5    6   16     3    4    5    6    7    9   12   13   16   17   18   19   21   25   27   28   36   40   46   48 
LCS_GDT     H     133     H     133      5    6   16     3    4    5    6    7    9   11   12   13   15   16   19   21   22   27   28   30   33   38   46 
LCS_GDT     L     134     L     134      5    6   16     3    4    5    5    7    8   10   12   13   14   14   16   20   21   23   26   27   30   35   36 
LCS_GDT     V     135     V     135      3    6   16     3    3    3    6    7    9   11   12   13   15   16   19   21   22   24   26   29   32   35   37 
LCS_AVERAGE  LCS_A:   9.88  (   4.75    7.84   17.05 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     14     15     15     18     21     23     24     27     32     36     40     43     46     49     51     53     61     64     69     70 
GDT PERCENT_CA  10.37  11.11  11.11  13.33  15.56  17.04  17.78  20.00  23.70  26.67  29.63  31.85  34.07  36.30  37.78  39.26  45.19  47.41  51.11  51.85
GDT RMS_LOCAL    0.17   0.32   0.32   1.35   1.62   1.78   1.90   2.29   3.27   3.42   3.86   3.99   4.53   4.54   4.65   4.84   6.36   6.46   6.84   6.89
GDT RMS_ALL_CA  16.88  16.92  16.92  17.10  16.96  16.84  16.79  16.81  15.74  15.92  15.47  15.53  15.33  15.52  15.55  15.55  16.15  16.23  16.22  16.24

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1          3.882
LGA    K       2      K       2          4.502
LGA    F       3      F       3          4.973
LGA    L       4      L       4          3.038
LGA    T       5      T       5          6.836
LGA    T       6      T       6          7.939
LGA    N       7      N       7          9.492
LGA    F       8      F       8         15.964
LGA    L       9      L       9         18.574
LGA    K      10      K      10         22.379
LGA    C      11      C      11         21.254
LGA    S      12      S      12         25.753
LGA    V      13      V      13         25.225
LGA    K      14      K      14         24.924
LGA    A      15      A      15         21.961
LGA    C      16      C      16         20.386
LGA    D      17      D      17         23.828
LGA    T      18      T      18         22.097
LGA    S      19      S      19         16.645
LGA    N      20      N      20         12.741
LGA    D      21      D      21          7.879
LGA    N      22      N      22         10.039
LGA    F      23      F      23          8.139
LGA    P      24      P      24          6.245
LGA    L      25      L      25          9.731
LGA    Q      26      Q      26         10.235
LGA    Y      27      Y      27         11.796
LGA    D      28      D      28         15.546
LGA    G      29      G      29         14.766
LGA    S      30      S      30         20.007
LGA    K      31      K      31         21.634
LGA    C      32      C      32         16.503
LGA    Q      33      Q      33         16.298
LGA    L      34      L      34         13.275
LGA    V      35      V      35         15.079
LGA    Q      36      Q      36         16.790
LGA    D      37      D      37         18.977
LGA    E      38      E      38         23.832
LGA    S      39      S      39         25.853
LGA    I      40      I      40         19.709
LGA    E      41      E      41         22.379
LGA    F      42      F      42         19.835
LGA    N      43      N      43         14.945
LGA    P      44      P      44         14.414
LGA    E      45      E      45         14.078
LGA    F      46      F      46          8.900
LGA    L      47      L      47          5.506
LGA    L      48      L      48          7.429
LGA    N      49      N      49          6.154
LGA    I      50      I      50          2.679
LGA    V      51      V      51          3.998
LGA    D      52      D      52          1.058
LGA    R      53      R      53          6.186
LGA    V      54      V      54          3.679
LGA    D      55      D      55          7.655
LGA    W      56      W      56          4.631
LGA    P      57      P      57          4.432
LGA    A      58      A      58          6.837
LGA    V      59      V      59          6.966
LGA    L      60      L      60          7.780
LGA    T      61      T      61         10.140
LGA    V      62      V      62         12.916
LGA    A      63      A      63         13.327
LGA    A      64      A      64         15.225
LGA    E      65      E      65         17.739
LGA    L      66      L      66         19.484
LGA    G      67      G      67         19.551
LGA    N      68      N      68         19.506
LGA    N      69      N      69         18.010
LGA    A      70      A      70         19.445
LGA    L      71      L      71         17.950
LGA    P      72      P      72         16.940
LGA    P      73      P      73         21.627
LGA    T      74      T      74         21.713
LGA    K      75      K      75         26.582
LGA    P      76      P      76         24.981
LGA    S      77      S      77         24.128
LGA    F      78      F      78         21.186
LGA    P      79      P      79         23.091
LGA    S      80      S      80         24.562
LGA    S      81      S      81         20.262
LGA    I      82      I      82         15.849
LGA    Q      83      Q      83         12.784
LGA    E      84      E      84          8.075
LGA    L      85      L      85          5.953
LGA    T      86      T      86          2.948
LGA    D      87      D      87          1.576
LGA    D      88      D      88          1.563
LGA    D      89      D      89          2.194
LGA    M      90      M      90          1.653
LGA    A      91      A      91          0.776
LGA    I      92      I      92          0.941
LGA    L      93      L      93          1.238
LGA    N      94      N      94          1.790
LGA    D      95      D      95          1.642
LGA    L      96      L      96          0.610
LGA    H      97      H      97          1.709
LGA    T      98      T      98          2.775
LGA    L      99      L      99          2.337
LGA    L     100      L     100          2.057
LGA    L     101      L     101          1.972
LGA    Q     102      Q     102          1.888
LGA    T     103      T     103          1.114
LGA    S     104      S     104          1.758
LGA    I     105      I     105          1.666
LGA    A     106      A     106          3.840
LGA    E     107      E     107          6.983
LGA    G     108      G     108         11.224
LGA    E     109      E     109         13.509
LGA    M     110      M     110         14.191
LGA    K     111      K     111         19.925
LGA    C     112      C     112         24.102
LGA    R     113      R     113         27.867
LGA    N     114      N     114         35.228
LGA    C     115      C     115         36.833
LGA    G     116      G     116         34.436
LGA    H     117      H     117         32.528
LGA    I     118      I     118         26.905
LGA    Y     119      Y     119         22.075
LGA    Y     120      Y     120         16.735
LGA    I     121      I     121         15.359
LGA    K     122      K     122         16.714
LGA    N     123      N     123         15.481
LGA    G     124      G     124         17.414
LGA    I     125      I     125         20.537
LGA    P     126      P     126         22.964
LGA    N     127      N     127         22.802
LGA    L     128      L     128         25.487
LGA    L     129      L     129         22.468
LGA    L     130      L     130         22.868
LGA    P     131      P     131         26.155
LGA    P     132      P     132         22.045
LGA    H     133      H     133         20.624
LGA    L     134      L     134         24.174
LGA    V     135      V     135         25.435

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  135  135    4.0     27    2.29    20.926    18.089     1.132

LGA_LOCAL      RMSD =  2.286  Number of atoms =   27  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 16.756  Number of atoms =  135 
Std_ALL_ATOMS  RMSD = 14.085  (standard rmsd on all 135 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.075962 * X  +  -0.667701 * Y  +   0.740544 * Z  +  27.107788
  Y_new =   0.567291 * X  +  -0.581836 * Y  +  -0.582794 * Z  +  -1.648787
  Z_new =   0.820007 * X  +   0.464374 * Y  +   0.334583 * Z  +  10.087979 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   0.946442   -2.195150  [ DEG:    54.2271   -125.7729 ]
  Theta =  -0.961423   -2.180170  [ DEG:   -55.0855   -124.9145 ]
  Phi   =   1.437685   -1.703908  [ DEG:    82.3733    -97.6267 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0319TS168_2                                  
REMARK     2: T0319.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0319TS168_2.T0319.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  135  135   4.0   27   2.29  18.089    14.08
REMARK  ---------------------------------------------------------- 
MOLECULE T0319TS168_2
PFRMAT TS
TARGET T0319
MODEL 2
PARENT N/A
ATOM      1  CA  MET     1      17.426  10.305  18.244  1.00 25.00           C
ATOM      2  CA  LYS     2      17.982   6.709  17.277  1.00 25.00           C
ATOM      3  CA  PHE     3      19.218   3.148  17.794  1.00 25.00           C
ATOM      4  CA  LEU     4      19.372   1.969  14.242  1.00 25.00           C
ATOM      5  CA  THR     5      20.781   3.263  10.975  1.00 25.00           C
ATOM      6  CA  THR     6      22.487   1.379   8.108  1.00 25.00           C
ATOM      7  CA  ASN     7      19.851   3.004   5.870  1.00 25.00           C
ATOM      8  CA  PHE     8      21.386   6.452   5.055  1.00 25.00           C
ATOM      9  CA  LEU     9      24.850   5.870   3.574  1.00 25.00           C
ATOM     10  CA  LYS    10      24.308   7.230   0.061  1.00 25.00           C
ATOM     11  CA  CYS    11      21.367   4.919  -0.502  1.00 25.00           C
ATOM     12  CA  SER    12      19.872   7.309  -3.078  1.00 25.00           C
ATOM     13  CA  VAL    13      17.141   4.778  -3.779  1.00 25.00           C
ATOM     14  CA  LYS    14      13.461   5.563  -3.115  1.00 25.00           C
ATOM     15  CA  ALA    15      13.932   3.855   0.306  1.00 25.00           C
ATOM     16  CA  CYS    16      16.854   5.445   2.222  1.00 25.00           C
ATOM     17  CA  ASP    17      16.292   8.704   0.322  1.00 25.00           C
ATOM     18  CA  THR    18      12.815   8.576   1.952  1.00 25.00           C
ATOM     19  CA  SER    19      11.190   7.793   5.301  1.00 25.00           C
ATOM     20  CA  ASN    20       9.775   4.817   7.217  1.00 25.00           C
ATOM     21  CA  ASP    21      10.414   2.816   4.080  1.00 25.00           C
ATOM     22  CA  ASN    22      13.818   1.976   5.446  1.00 25.00           C
ATOM     23  CA  PHE    23      15.421   2.243   8.870  1.00 25.00           C
ATOM     24  CA  PRO    24      17.524  -0.815   8.200  1.00 25.00           C
ATOM     25  CA  LEU    25      18.071  -2.071   4.608  1.00 25.00           C
ATOM     26  CA  GLN    26      19.902  -0.121   1.856  1.00 25.00           C
ATOM     27  CA  TYR    27      23.498   0.684   2.804  1.00 25.00           C
ATOM     28  CA  ASP    28      27.175   1.564   2.191  1.00 25.00           C
ATOM     29  CA  GLY    29      30.769   2.814   1.969  1.00 25.00           C
ATOM     30  CA  SER    30      34.009   1.788   3.614  1.00 25.00           C
ATOM     31  CA  LYS    31      31.766  -0.803   5.378  1.00 25.00           C
ATOM     32  CA  CYS    32      29.628   0.127   8.374  1.00 25.00           C
ATOM     33  CA  GLN    33      26.227  -1.585   8.394  1.00 25.00           C
ATOM     34  CA  LEU    34      24.050  -1.943  11.554  1.00 25.00           C
ATOM     35  CA  VAL    35      21.443  -2.596  14.256  1.00 25.00           C
ATOM     36  CA  GLN    36      17.726  -2.730  13.548  1.00 25.00           C
ATOM     37  CA  ASP    37      14.901  -3.149  16.040  1.00 25.00           C
ATOM     38  CA  GLU    38      12.168  -4.221  18.440  1.00 25.00           C
ATOM     39  CA  SER    39      10.285  -5.566  21.431  1.00 25.00           C
ATOM     40  CA  ILE    40      13.768  -6.026  22.915  1.00 25.00           C
ATOM     41  CA  GLU    41      13.572  -9.375  24.647  1.00 25.00           C
ATOM     42  CA  PHE    42      15.938 -10.445  21.802  1.00 25.00           C
ATOM     43  CA  ASN    43      18.355  -8.024  23.434  1.00 25.00           C
ATOM     44  CA  PRO    44      20.100  -4.625  23.831  1.00 25.00           C
ATOM     45  CA  GLU    45      18.571  -4.802  20.325  1.00 25.00           C
ATOM     46  CA  PHE    46      21.808  -3.415  18.818  1.00 25.00           C
ATOM     47  CA  LEU    47      23.850  -6.019  20.745  1.00 25.00           C
ATOM     48  CA  LEU    48      21.543  -8.802  19.479  1.00 25.00           C
ATOM     49  CA  ASN    49      21.940  -7.531  15.888  1.00 25.00           C
ATOM     50  CA  ILE    50      25.747  -7.489  16.297  1.00 25.00           C
ATOM     51  CA  VAL    51      25.666 -11.074  17.642  1.00 25.00           C
ATOM     52  CA  ASP    52      23.525 -12.170  14.662  1.00 25.00           C
ATOM     53  CA  ARG    53      22.644 -13.902  11.346  1.00 25.00           C
ATOM     54  CA  VAL    54      20.996 -10.579  10.661  1.00 25.00           C
ATOM     55  CA  ASP    55      24.467  -9.679   9.312  1.00 25.00           C
ATOM     56  CA  TRP    56      23.187  -6.157   8.884  1.00 25.00           C
ATOM     57  CA  PRO    57      21.245  -7.672   5.951  1.00 25.00           C
ATOM     58  CA  ALA    58      22.260  -4.725   3.725  1.00 25.00           C
ATOM     59  CA  VAL    59      25.922  -5.183   4.748  1.00 25.00           C
ATOM     60  CA  LEU    60      25.708  -8.919   3.935  1.00 25.00           C
ATOM     61  CA  THR    61      24.193  -8.113   0.512  1.00 25.00           C
ATOM     62  CA  VAL    62      27.006  -5.605  -0.170  1.00 25.00           C
ATOM     63  CA  ALA    63      29.617  -8.231   0.807  1.00 25.00           C
ATOM     64  CA  ALA    64      27.970 -10.775  -1.534  1.00 25.00           C
ATOM     65  CA  GLU    65      28.004  -8.214  -4.382  1.00 25.00           C
ATOM     66  CA  LEU    66      31.712  -7.508  -3.735  1.00 25.00           C
ATOM     67  CA  GLY    67      32.512  -8.487  -7.305  1.00 25.00           C
ATOM     68  CA  ASN    68      30.832 -11.183  -9.427  1.00 25.00           C
ATOM     69  CA  ASN    69      29.017 -14.526  -8.932  1.00 25.00           C
ATOM     70  CA  ALA    70      30.414 -18.087  -8.733  1.00 25.00           C
ATOM     71  CA  LEU    71      33.743 -16.240  -8.816  1.00 25.00           C
ATOM     72  CA  PRO    72      36.994 -14.941 -10.345  1.00 25.00           C
ATOM     73  CA  PRO    73      40.532 -15.313 -11.845  1.00 25.00           C
ATOM     74  CA  THR    74      40.498 -18.577  -9.863  1.00 25.00           C
ATOM     75  CA  LYS    75      42.328 -21.899 -10.339  1.00 25.00           C
ATOM     76  CA  PRO    76      45.491 -20.878  -8.489  1.00 25.00           C
ATOM     77  CA  SER    77      46.988 -22.033  -5.189  1.00 25.00           C
ATOM     78  CA  PHE    78      45.860 -18.974  -3.289  1.00 25.00           C
ATOM     79  CA  PRO    79      48.955 -16.975  -2.538  1.00 25.00           C
ATOM     80  CA  SER    80      49.639 -16.638   1.238  1.00 25.00           C
ATOM     81  CA  SER    81      47.296 -18.087   3.799  1.00 25.00           C
ATOM     82  CA  ILE    82      45.439 -19.376   6.853  1.00 25.00           C
ATOM     83  CA  GLN    83      46.844 -16.406   8.801  1.00 25.00           C
ATOM     84  CA  GLU    84      44.141 -15.628  11.260  1.00 25.00           C
ATOM     85  CA  LEU    85      41.296 -17.384   9.498  1.00 25.00           C
ATOM     86  CA  THR    86      38.733 -14.802   8.465  1.00 25.00           C
ATOM     87  CA  ASP    87      40.610 -11.611   9.449  1.00 25.00           C
ATOM     88  CA  ASP    88      38.603  -9.609   6.873  1.00 25.00           C
ATOM     89  CA  ASP    89      35.339 -11.064   8.248  1.00 25.00           C
ATOM     90  CA  MET    90      36.394 -10.131  11.809  1.00 25.00           C
ATOM     91  CA  ALA    91      37.207  -6.569  10.661  1.00 25.00           C
ATOM     92  CA  ILE    92      33.784  -6.309   8.962  1.00 25.00           C
ATOM     93  CA  LEU    93      32.075  -7.531  12.164  1.00 25.00           C
ATOM     94  CA  ASN    94      34.005  -4.936  14.214  1.00 25.00           C
ATOM     95  CA  ASP    95      32.959  -2.184  11.764  1.00 25.00           C
ATOM     96  CA  LEU    96      29.306  -3.304  12.028  1.00 25.00           C
ATOM     97  CA  HIS    97      29.536  -3.236  15.850  1.00 25.00           C
ATOM     98  CA  THR    98      31.024   0.291  15.722  1.00 25.00           C
ATOM     99  CA  LEU    99      28.193   1.428  13.408  1.00 25.00           C
ATOM    100  CA  LEU   100      25.603  -0.063  15.803  1.00 25.00           C
ATOM    101  CA  LEU   101      27.249   1.748  18.749  1.00 25.00           C
ATOM    102  CA  GLN   102      27.181   5.040  16.794  1.00 25.00           C
ATOM    103  CA  THR   103      26.027   4.851  13.141  1.00 25.00           C
ATOM    104  CA  SER   104      22.746   6.126  14.555  1.00 25.00           C
ATOM    105  CA  ILE   105      20.940   8.637  12.342  1.00 25.00           C
ATOM    106  CA  ALA   106      22.641  11.978  12.345  1.00 25.00           C
ATOM    107  CA  GLU   107      24.245  14.888  10.595  1.00 25.00           C
ATOM    108  CA  GLY   108      26.539  13.015   8.210  1.00 25.00           C
ATOM    109  CA  GLU   109      25.547   9.396   7.600  1.00 25.00           C
ATOM    110  CA  MET   110      24.917   5.782   8.645  1.00 25.00           C
ATOM    111  CA  LYS   111      27.201   3.302   7.010  1.00 25.00           C
ATOM    112  CA  CYS   112      29.461   6.046   5.683  1.00 25.00           C
ATOM    113  CA  ARG   113      32.899   7.671   5.143  1.00 25.00           C
ATOM    114  CA  ASN   114      36.689   7.240   4.639  1.00 25.00           C
ATOM    115  CA  CYS   115      36.896   4.362   7.116  1.00 25.00           C
ATOM    116  CA  GLY   116      36.581   6.617  10.158  1.00 25.00           C
ATOM    117  CA  HIS   117      34.658   3.744  11.673  1.00 25.00           C
ATOM    118  CA  ILE   118      31.780   4.615   9.357  1.00 25.00           C
ATOM    119  CA  TYR   119      29.577   7.414  10.688  1.00 25.00           C
ATOM    120  CA  TYR   120      27.133   9.708  12.456  1.00 25.00           C
ATOM    121  CA  ILE   121      29.122   9.564  15.683  1.00 25.00           C
ATOM    122  CA  LYS   122      31.069  10.816  18.756  1.00 25.00           C
ATOM    123  CA  ASN   123      33.339  12.484  21.311  1.00 25.00           C
ATOM    124  CA  GLY   124      34.973  13.588  24.576  1.00 25.00           C
ATOM    125  CA  ILE   125      33.718  15.267  27.726  1.00 25.00           C
ATOM    126  CA  PRO   126      30.835  17.544  28.816  1.00 25.00           C
ATOM    127  CA  ASN   127      27.233  17.327  30.017  1.00 25.00           C
ATOM    128  CA  LEU   128      27.702  14.208  32.125  1.00 25.00           C
ATOM    129  CA  LEU   129      24.721  12.637  33.749  1.00 25.00           C
ATOM    130  CA  LEU   130      26.934  10.756  36.184  1.00 25.00           C
ATOM    131  CA  PRO   131      29.681   8.790  37.851  1.00 25.00           C
ATOM    132  CA  PRO   132      29.561   4.927  37.945  1.00 25.00           C
ATOM    133  CA  HIS   133      26.285   3.336  38.928  1.00 25.00           C
ATOM    134  CA  LEU   134      23.378   4.791  40.793  1.00 25.00           C
ATOM    135  CA  VAL   135      20.350   5.847  38.709  1.00 25.00           C
TER
END
