
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  135 (  135),  selected  135 , name T0319TS168_4
# Molecule2: number of CA atoms  135 ( 1055),  selected  135 , name T0319.pdb
# PARAMETERS: T0319TS168_4.T0319.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    32        79 - 110         4.87    20.08
  LCS_AVERAGE:     18.67

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    20        86 - 105         1.71    20.69
  LCS_AVERAGE:      8.02

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    16        86 - 101         0.66    20.99
  LCS_AVERAGE:      5.19

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  135
LCS_GDT     M       1     M       1      3    4   15     0    3    3    7    7    7    8    9   11   17   19   23   27   37   39   44   49   56   60   65 
LCS_GDT     K       2     K       2      3    4   15     0    3    3    5    6    7    8    9   11   17   19   23   27   37   39   44   49   56   60   65 
LCS_GDT     F       3     F       3      3    4   23     1    3    3    5    6    7   11   13   15   19   22   25   27   30   39   43   49   53   60   65 
LCS_GDT     L       4     L       4      3    4   23     0    3    3    4    6   11   18   22   24   26   28   30   33   37   42   44   49   56   60   65 
LCS_GDT     T       5     T       5      3    4   23     3    5   13   13   13   14   18   22   24   26   30   35   36   39   43   47   55   56   60   65 
LCS_GDT     T       6     T       6      3    5   23     3    3    4    6   10   14   18   23   27   31   33   38   41   45   50   50   55   56   60   65 
LCS_GDT     N       7     N       7      4    5   23    11   16   17   18   20   22   22   24   27   31   33   38   41   45   50   50   55   56   58   60 
LCS_GDT     F       8     F       8      4    5   23    10   16   17   18   20   22   22   24   27   31   33   38   41   45   50   50   55   56   58   60 
LCS_GDT     L       9     L       9      4    5   23     4    4    4    5    7    9   16   23   26   31   33   38   41   45   50   50   55   56   58   60 
LCS_GDT     K      10     K      10      4    5   23     4    4    5    5    7    9   11   13   14   22   28   38   41   45   50   50   55   56   58   60 
LCS_GDT     C      11     C      11      4    7   23     3    4    5    5    7    9   11   13   15   19   32   38   41   45   50   50   55   56   58   60 
LCS_GDT     S      12     S      12      4    7   23     3    4    5    5    7    9   11   14   19   31   33   38   41   45   50   50   55   56   58   60 
LCS_GDT     V      13     V      13      5    7   23     3    4    5    6    7    9   11   14   26   31   33   38   41   45   50   50   55   56   58   60 
LCS_GDT     K      14     K      14      5    7   23     3    4    5    6    7    9   11   13   15   19   24   26   41   43   50   50   55   56   58   60 
LCS_GDT     A      15     A      15      5    7   23     3    4    5    6    7    9   11   13   14   17   20   22   27   29   34   38   47   49   54   58 
LCS_GDT     C      16     C      16      5    7   23     3    4    5    6    6    9   11   12   15   17   20   25   38   43   46   47   55   56   58   60 
LCS_GDT     D      17     D      17      5    8   23     3    4    6    7    8    8   11   12   14   19   24   26   29   43   46   48   55   56   58   60 
LCS_GDT     T      18     T      18      3    8   23     3    4    6    7    8    8   10   12   15   19   24   32   38   43   50   50   55   56   58   60 
LCS_GDT     S      19     S      19      3    8   23     3    4    4    5    6    8   10   11   14   19   32   38   41   43   50   50   55   56   58   60 
LCS_GDT     N      20     N      20      4    8   23     3    4    4    6    8    8   17   22   26   31   33   38   41   45   50   50   55   56   58   60 
LCS_GDT     D      21     D      21      4    8   23     3    4    6    7    8   10   20   23   27   31   33   38   41   45   50   50   55   56   58   60 
LCS_GDT     N      22     N      22      4    8   23     3    4    6    7    8   21   22   24   27   31   33   38   41   45   50   50   55   56   58   60 
LCS_GDT     F      23     F      23      4    8   23     3    4    6    7   19   21   22   24   27   31   33   38   41   45   50   50   55   56   58   60 
LCS_GDT     P      24     P      24      4    8   23     2    3    5    7   19   21   22   24   27   31   33   38   41   45   50   50   55   56   58   60 
LCS_GDT     L      25     L      25      5    8   23     2    3    5    7    8    9   22   23   27   31   33   38   41   45   50   50   55   56   58   60 
LCS_GDT     Q      26     Q      26      5    8   23     3    4    5    7    8    9   11   15   18   20   26   38   41   45   50   50   55   56   60   63 
LCS_GDT     Y      27     Y      27      5    8   23     3    4    5    9   11   13   18   20   21   24   27   31   32   43   46   49   51   56   60   65 
LCS_GDT     D      28     D      28      5    8   20     3    4    5    7   11   13   18   20   21   24   27   30   32   37   40   44   49   56   60   65 
LCS_GDT     G      29     G      29      5    8   17     3    4    5    7    8   13   15   20   21   24   27   29   32   37   40   44   49   56   60   65 
LCS_GDT     S      30     S      30      4    7   17     3    4    5    6    7    9   11   15   16   17   21   23   32   34   40   43   49   56   60   65 
LCS_GDT     K      31     K      31      4    7   17     3    4    5    6   10   12   12   15   16   17   21   23   27   33   35   39   49   56   59   65 
LCS_GDT     C      32     C      32      4    7   17     3    4    4    6   10   12   12   15   16   17   21   23   27   33   40   43   49   56   60   65 
LCS_GDT     Q      33     Q      33      4    7   17     3    4    5    6   10   12   12   15   16   17   21   23   27   33   37   43   49   56   60   65 
LCS_GDT     L      34     L      34      4    8   17     3    4    5    6    7   10   11   12   14   16   19   23   27   33   39   44   49   56   60   65 
LCS_GDT     V      35     V      35      4    8   22     3    4    5    7    8   10   11   12   14   15   18   22   28   37   39   44   49   56   60   65 
LCS_GDT     Q      36     Q      36      4    8   22     3    4    6    7    8   10   11   12   14   15   17   22   28   37   39   44   49   56   60   65 
LCS_GDT     D      37     D      37      4    8   24     3    4    6    7    8   10   11   13   15   18   25   27   31   37   40   44   49   56   60   65 
LCS_GDT     E      38     E      38      5    8   24     3    5    5    7    8   10   11   13   16   22   26   30   32   37   40   44   49   56   60   65 
LCS_GDT     S      39     S      39      5    8   29     3    5    6    9   11   12   18   20   21   24   27   30   32   37   40   44   49   56   60   65 
LCS_GDT     I      40     I      40      5    8   29     3    5    6    9   11   12   18   20   21   24   27   30   32   37   40   44   49   56   60   65 
LCS_GDT     E      41     E      41      5    8   30     3    5    6    9   11   13   18   20   21   24   27   30   32   37   40   44   49   56   60   65 
LCS_GDT     F      42     F      42      5   13   30     3    5    6    9   11   13   18   20   21   24   27   30   32   37   40   44   49   56   60   65 
LCS_GDT     N      43     N      43     12   13   30     5   12   13   13   13   14   17   20   21   23   24   28   32   37   39   43   49   56   60   65 
LCS_GDT     P      44     P      44     12   13   30     9   12   13   13   13   14   17   20   21   23   27   30   32   37   40   44   49   56   60   65 
LCS_GDT     E      45     E      45     12   13   30     9   12   13   13   13   14   17   20   21   23   27   30   32   37   40   44   49   56   60   65 
LCS_GDT     F      46     F      46     12   13   30     9   12   13   13   13   14   17   20   21   23   27   28   32   35   40   43   49   56   60   65 
LCS_GDT     L      47     L      47     12   13   30     9   12   13   13   13   14   17   20   21   24   27   30   32   37   40   44   49   56   60   65 
LCS_GDT     L      48     L      48     12   13   30     9   12   13   13   13   14   17   20   21   24   27   30   33   37   40   44   49   56   60   65 
LCS_GDT     N      49     N      49     12   13   30     9   12   13   13   13   14   17   20   21   24   27   30   33   35   40   43   49   56   60   65 
LCS_GDT     I      50     I      50     12   13   30     9   12   13   13   13   14   18   22   24   26   28   30   33   37   42   44   49   56   60   65 
LCS_GDT     V      51     V      51     12   13   30     9   12   13   13   13   14   18   22   25   28   30   35   37   39   43   49   55   56   60   65 
LCS_GDT     D      52     D      52     12   13   30     9   12   13   13   13   14   18   22   24   26   28   30   33   36   42   44   49   56   60   65 
LCS_GDT     R      53     R      53     12   13   30     9   12   13   13   13   14   18   22   24   26   28   30   33   35   39   43   48   56   60   65 
LCS_GDT     V      54     V      54     12   13   30     4   12   13   13   13   14   18   22   24   26   28   30   33   37   42   44   49   56   60   65 
LCS_GDT     D      55     D      55     12   13   30     4   12   12   12   13   14   18   20   21   24   27   30   32   43   46   47   55   56   60   65 
LCS_GDT     W      56     W      56     12   13   30    11   12   12   12   13   14   14   20   26   31   33   38   41   45   50   50   55   56   59   63 
LCS_GDT     P      57     P      57     12   13   30    11   12   12   12   13   14   14   16   16   19   26   28   41   45   50   50   55   56   60   63 
LCS_GDT     A      58     A      58     12   13   30    11   12   12   12   13   14   14   15   19   23   26   30   32   37   40   44   49   56   60   65 
LCS_GDT     V      59     V      59     12   13   30    11   12   12   12   13   14   18   20   21   24   27   32   41   45   50   50   55   56   60   65 
LCS_GDT     L      60     L      60     12   13   30    11   12   12   12   13   14   14   15   17   22   26   30   32   37   40   45   50   56   60   65 
LCS_GDT     T      61     T      61     12   13   30    11   12   12   12   13   14   14   15   16   18   23   25   30   35   40   44   49   56   60   65 
LCS_GDT     V      62     V      62     12   13   30    11   12   12   12   13   14   14   15   18   22   26   29   32   35   40   44   49   56   60   65 
LCS_GDT     A      63     A      63     12   13   30    11   12   12   12   13   14   18   20   21   24   27   30   32   37   40   44   49   56   60   65 
LCS_GDT     A      64     A      64     12   13   30    11   12   12   12   13   14   14   15   18   20   26   29   32   35   40   44   49   56   60   65 
LCS_GDT     E      65     E      65     12   13   30    11   12   12   12   13   14   14   15   16   20   23   25   30   33   37   42   45   51   57   63 
LCS_GDT     L      66     L      66     12   13   30    11   12   12   12   13   14   14   15   18   21   24   29   32   35   40   43   49   56   59   65 
LCS_GDT     G      67     G      67      5   13   30     3    4    5    9   13   14   14   15   18   21   24   29   32   35   40   43   45   54   59   65 
LCS_GDT     N      68     N      68      5   10   30     3    4    5    8   12   14   14   15   15   17   23   26   28   33   36   41   45   51   57   63 
LCS_GDT     N      69     N      69      5   11   30     3    4    5    8   12   14   14   15   16   21   24   27   31   35   40   43   49   56   60   65 
LCS_GDT     A      70     A      70      4   11   30     3    4    5    8   12   14   14   15   18   22   26   29   32   35   40   43   49   56   60   65 
LCS_GDT     L      71     L      71      4   11   24     3    4    6    8   12   14   14   15   16   17   21   23   25   33   35   39   45   51   57   63 
LCS_GDT     P      72     P      72      3   11   24     3    3    5    8   12   14   14   15   16   17   21   23   27   33   40   42   49   56   60   65 
LCS_GDT     P      73     P      73      3   11   24     3    3    4    7   10   14   14   15   16   17   21   23   27   33   34   38   42   45   53   59 
LCS_GDT     T      74     T      74      4   11   24     3    3    6    8   12   14   14   15   16   17   20   23   25   27   31   36   42   43   51   59 
LCS_GDT     K      75     K      75      5   11   24     3    3    6    8   12   14   14   15   16   17   20   23   25   27   30   32   35   36   41   49 
LCS_GDT     P      76     P      76      5   11   24     3    4    5    8   12   14   14   15   16   17   20   23   25   27   30   33   42   43   49   56 
LCS_GDT     S      77     S      77      5   11   24     3    4    6    8   12   14   14   15   16   17   20   23   27   33   35   38   42   52   56   61 
LCS_GDT     F      78     F      78      5   11   30     3    4    6    8   12   14   14   15   16   17   20   23   26   33   39   46   50   56   60   65 
LCS_GDT     P      79     P      79      5   11   32     3    4    6    8   12   14   14   15   16   17   20   22   39   41   45   49   52   56   60   65 
LCS_GDT     S      80     S      80      4   10   32     3    4    4    8   12   14   14   15   15   19   20   22   26   27   44   47   51   55   58   62 
LCS_GDT     S      81     S      81      4    7   32     3    3    4    7    8   12   14   16   21   25   31   38   41   45   50   50   55   56   58   60 
LCS_GDT     I      82     I      82      4    7   32     3    4    4    6   10   10   14   15   18   22   31   35   41   45   50   50   55   56   58   60 
LCS_GDT     Q      83     Q      83      4    5   32     3    4    4    7    9   12   17   22   26   31   33   38   41   45   50   50   55   56   58   60 
LCS_GDT     E      84     E      84      4    5   32     3    4    4    5    8    9   11   17   21   25   28   31   39   45   50   50   55   56   58   60 
LCS_GDT     L      85     L      85      4   18   32     3    4    4    5    8   12   15   22   26   31   33   38   41   45   50   50   55   56   58   60 
LCS_GDT     T      86     T      86     16   20   32    14   16   17   18   20   22   22   24   27   31   33   38   41   45   50   50   55   56   58   60 
LCS_GDT     D      87     D      87     16   20   32    14   16   17   18   20   22   22   24   27   31   33   38   41   45   50   50   55   56   58   60 
LCS_GDT     D      88     D      88     16   20   32    14   16   17   18   20   22   22   24   27   31   33   38   41   45   50   50   55   56   58   60 
LCS_GDT     D      89     D      89     16   20   32    14   16   17   18   20   22   22   24   27   31   33   38   41   45   50   50   55   56   58   60 
LCS_GDT     M      90     M      90     16   20   32    14   16   17   18   20   22   22   24   27   31   33   38   41   45   50   50   55   56   58   60 
LCS_GDT     A      91     A      91     16   20   32    14   16   17   18   20   22   22   24   27   31   33   38   41   45   50   50   55   56   58   60 
LCS_GDT     I      92     I      92     16   20   32    14   16   17   18   20   22   22   24   27   31   33   38   41   45   50   50   55   56   58   60 
LCS_GDT     L      93     L      93     16   20   32    14   16   17   18   20   22   22   24   27   31   33   38   41   45   50   50   55   56   58   60 
LCS_GDT     N      94     N      94     16   20   32    14   16   17   18   20   22   22   24   27   31   33   38   41   45   50   50   55   56   58   60 
LCS_GDT     D      95     D      95     16   20   32    14   16   17   18   20   22   22   24   27   31   33   38   41   45   50   50   55   56   58   60 
LCS_GDT     L      96     L      96     16   20   32    14   16   17   18   20   22   22   24   27   31   33   38   41   45   50   50   55   56   58   60 
LCS_GDT     H      97     H      97     16   20   32    14   16   17   18   20   22   22   24   27   31   33   38   41   45   50   50   55   56   58   60 
LCS_GDT     T      98     T      98     16   20   32    14   16   17   18   20   22   22   24   27   31   33   38   41   45   50   50   55   56   58   60 
LCS_GDT     L      99     L      99     16   20   32    14   16   17   18   20   22   22   24   27   31   33   38   41   45   50   50   55   56   58   60 
LCS_GDT     L     100     L     100     16   20   32     4   16   17   18   20   22   22   24   27   31   33   38   41   45   50   50   55   56   58   60 
LCS_GDT     L     101     L     101     16   20   32     3    5   15   18   20   22   22   24   27   31   33   38   41   45   50   50   55   56   58   60 
LCS_GDT     Q     102     Q     102      5   20   32     3    4    7   14   20   22   22   24   27   31   33   38   41   45   50   50   55   56   58   60 
LCS_GDT     T     103     T     103      5   20   32     3    4    5    9   20   22   22   24   27   31   31   36   41   45   50   50   55   56   57   60 
LCS_GDT     S     104     S     104      3   20   32     3    3    5   11   16   22   22   23   25   28   31   35   40   45   50   50   55   56   58   60 
LCS_GDT     I     105     I     105      3   20   32     3    7   13   18   20   22   22   24   27   31   33   38   41   45   50   50   55   56   58   63 
LCS_GDT     A     106     A     106      3   12   32     3    3    5    7    9   14   19   23   25   27   30   34   36   39   45   48   50   56   58   65 
LCS_GDT     E     107     E     107      3    7   32     3    3    5    8   10   16   20   23   27   29   31   38   41   45   50   50   55   56   59   65 
LCS_GDT     G     108     G     108      3    7   32     0    3    4    6   10   14   19   23   25   29   31   38   41   43   50   50   55   56   60   65 
LCS_GDT     E     109     E     109      6   12   32     2    4    6   10   11   12   16   19   22   27   31   35   41   43   50   50   55   56   60   65 
LCS_GDT     M     110     M     110      6   12   32     3    4    6   10   11   11   12   15   19   26   32   38   41   45   50   50   55   56   60   65 
LCS_GDT     K     111     K     111      6   12   31     3    4    6   10   11   11   12   15   18   23   26   30   32   37   39   44   49   56   60   65 
LCS_GDT     C     112     C     112      6   12   16     3    4    7   10   11   13   18   20   21   24   27   30   32   37   40   44   49   56   60   65 
LCS_GDT     R     113     R     113      6   12   16     3    4    7   10   11   13   18   20   21   24   27   30   32   37   39   43   49   56   60   65 
LCS_GDT     N     114     N     114      6   12   16     4    5    7   10   11   13   18   20   21   24   27   30   32   37   40   43   49   56   60   65 
LCS_GDT     C     115     C     115      5   12   16     4    5    7   10   11   11   12   13   13   17   20   29   32   35   40   44   49   56   60   65 
LCS_GDT     G     116     G     116      5   12   16     4    5    6    9   11   11   12   13   13   15   19   23   28   37   39   44   49   56   60   65 
LCS_GDT     H     117     H     117      5   12   16     4    4    7   10   11   11   12   14   15   17   21   23   27   33   39   44   49   56   60   65 
LCS_GDT     I     118     I     118      4   12   16     3    3    4    7   10   11   12   14   15   17   21   23   27   33   35   44   49   56   60   65 
LCS_GDT     Y     119     Y     119      4   12   16     3    5    7   10   11   11   12   13   15   17   21   23   29   34   39   44   49   56   60   65 
LCS_GDT     Y     120     Y     120      4   12   16     0    5    7   10   11   11   12   13   13   17   20   26   29   37   39   44   49   56   60   65 
LCS_GDT     I     121     I     121      4    5   16     0    3    4    7    7    8   10   12   14   17   19   23   29   37   39   44   49   56   60   65 
LCS_GDT     K     122     K     122      4    5   16     0    3    4    7    7    8   10   12   14   16   19   23   25   27   31   33   39   47   55   61 
LCS_GDT     N     123     N     123      4    6   16     3    3    4    5    6    8    9   11   12   13   18   23   25   27   34   36   41   47   48   50 
LCS_GDT     G     124     G     124      3    6   15     3    3    3    5    7    8    9   11   12   13   16   19   22   26   30   32   35   36   40   44 
LCS_GDT     I     125     I     125      3    6   15     3    3    3    5    7    8    9   11   12   13   16   17   19   22   27   30   32   39   40   51 
LCS_GDT     P     126     P     126      3    6   15     3    3    4    5    7    8    9   11   12   13   16   17   19   20   24   26   30   36   39   42 
LCS_GDT     N     127     N     127      3    6   15     3    3    4    5    5    8    8   10   11   13   16   17   18   20   24   26   32   36   39   43 
LCS_GDT     L     128     L     128      4    6   15     3    3    5    5    7    8    9   11   12   13   16   17   19   20   24   29   31   36   39   48 
LCS_GDT     L     129     L     129      4    5   15     3    3    5    5    6    8    9   11   12   13   16   17   19   20   26   29   33   36   40   48 
LCS_GDT     L     130     L     130      4    6   15     3    3    5    5    7    8    9   11   12   13   16   17   20   20   26   29   31   36   40   48 
LCS_GDT     P     131     P     131      4    6   15     3    3    5    5    7    8    9   10   12   13   16   22   23   25   26   29   31   36   40   48 
LCS_GDT     P     132     P     132      4    6   15     3    3    5    5    6    8    9   11   12   12   14   17   20   20   26   29   33   37   43   51 
LCS_GDT     H     133     H     133      4    6   15     3    3    4    5    6    8    9   11   12   12   14   17   19   20   24   26   27   28   34   41 
LCS_GDT     L     134     L     134      4    6   15     3    3    4    5    6    8    9   11   12   12   14   17   19   20   24   26   27   28   34   41 
LCS_GDT     V     135     V     135      4    6   15     3    3    3    5    6    8    9   11   12   12   14   17   19   20   24   26   27   28   28   41 
LCS_AVERAGE  LCS_A:  10.62  (   5.19    8.02   18.67 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     14     16     17     18     20     22     22     24     27     31     33     38     41     45     50     50     55     56     60     65 
GDT PERCENT_CA  10.37  11.85  12.59  13.33  14.81  16.30  16.30  17.78  20.00  22.96  24.44  28.15  30.37  33.33  37.04  37.04  40.74  41.48  44.44  48.15
GDT RMS_LOCAL    0.17   0.44   0.54   0.78   1.31   1.67   1.61   1.89   2.51   3.19   3.62   4.20   4.59   4.79   5.18   5.18   5.65   5.74   6.91   7.28
GDT RMS_ALL_CA  20.76  20.93  20.88  20.92  20.82  20.77  20.73  20.68  20.61  20.69  20.69  20.75  20.61  20.57  20.41  20.41  20.37  20.32  15.73  15.86

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         22.322
LGA    K       2      K       2         19.308
LGA    F       3      F       3         13.787
LGA    L       4      L       4         10.199
LGA    T       5      T       5          8.605
LGA    T       6      T       6          5.202
LGA    N       7      N       7          0.685
LGA    F       8      F       8          0.757
LGA    L       9      L       9          7.195
LGA    K      10      K      10         11.853
LGA    C      11      C      11         11.264
LGA    S      12      S      12         10.279
LGA    V      13      V      13         10.217
LGA    K      14      K      14         10.915
LGA    A      15      A      15         14.980
LGA    C      16      C      16         12.036
LGA    D      17      D      17          8.690
LGA    T      18      T      18         10.072
LGA    S      19      S      19         12.229
LGA    N      20      N      20          9.359
LGA    D      21      D      21          7.763
LGA    N      22      N      22          3.830
LGA    F      23      F      23          3.684
LGA    P      24      P      24          3.396
LGA    L      25      L      25          4.888
LGA    Q      26      Q      26          9.703
LGA    Y      27      Y      27         11.600
LGA    D      28      D      28         16.204
LGA    G      29      G      29         17.639
LGA    S      30      S      30         23.648
LGA    K      31      K      31         21.087
LGA    C      32      C      32         18.690
LGA    Q      33      Q      33         21.519
LGA    L      34      L      34         19.728
LGA    V      35      V      35         21.573
LGA    Q      36      Q      36         24.715
LGA    D      37      D      37         29.166
LGA    E      38      E      38         32.395
LGA    S      39      S      39         35.957
LGA    I      40      I      40         31.626
LGA    E      41      E      41         31.830
LGA    F      42      F      42         26.371
LGA    N      43      N      43         20.950
LGA    P      44      P      44         16.258
LGA    E      45      E      45         17.873
LGA    F      46      F      46         16.990
LGA    L      47      L      47         11.569
LGA    L      48      L      48         10.975
LGA    N      49      N      49         14.575
LGA    I      50      I      50         11.150
LGA    V      51      V      51          8.007
LGA    D      52      D      52         12.381
LGA    R      53      R      53         14.679
LGA    V      54      V      54         11.182
LGA    D      55      D      55         10.413
LGA    W      56      W      56          5.835
LGA    P      57      P      57         10.824
LGA    A      58      A      58         14.104
LGA    V      59      V      59          9.879
LGA    L      60      L      60         13.758
LGA    T      61      T      61         19.444
LGA    V      62      V      62         18.875
LGA    A      63      A      63         18.091
LGA    A      64      A      64         24.484
LGA    E      65      E      65         27.577
LGA    L      66      L      66         25.447
LGA    G      67      G      67         31.029
LGA    N      68      N      68         32.353
LGA    N      69      N      69         34.477
LGA    A      70      A      70         31.642
LGA    L      71      L      71         31.595
LGA    P      72      P      72         30.278
LGA    P      73      P      73         34.896
LGA    T      74      T      74         33.695
LGA    K      75      K      75         28.941
LGA    P      76      P      76         24.856
LGA    S      77      S      77         21.471
LGA    F      78      F      78         14.624
LGA    P      79      P      79         12.061
LGA    S      80      S      80         14.173
LGA    S      81      S      81         10.159
LGA    I      82      I      82         10.427
LGA    Q      83      Q      83          9.698
LGA    E      84      E      84         10.342
LGA    L      85      L      85          7.244
LGA    T      86      T      86          1.214
LGA    D      87      D      87          0.753
LGA    D      88      D      88          0.506
LGA    D      89      D      89          0.964
LGA    M      90      M      90          0.929
LGA    A      91      A      91          0.580
LGA    I      92      I      92          0.300
LGA    L      93      L      93          0.802
LGA    N      94      N      94          1.016
LGA    D      95      D      95          0.667
LGA    L      96      L      96          0.273
LGA    H      97      H      97          0.791
LGA    T      98      T      98          1.096
LGA    L      99      L      99          0.910
LGA    L     100      L     100          1.236
LGA    L     101      L     101          2.095
LGA    Q     102      Q     102          3.216
LGA    T     103      T     103          3.292
LGA    S     104      S     104          5.215
LGA    I     105      I     105          3.324
LGA    A     106      A     106          9.169
LGA    E     107      E     107          8.675
LGA    G     108      G     108          9.222
LGA    E     109      E     109          9.548
LGA    M     110      M     110          8.141
LGA    K     111      K     111         13.339
LGA    C     112      C     112         18.398
LGA    R     113      R     113         22.323
LGA    N     114      N     114         29.558
LGA    C     115      C     115         30.774
LGA    G     116      G     116         27.486
LGA    H     117      H     117         26.244
LGA    I     118      I     118         21.147
LGA    Y     119      Y     119         18.002
LGA    Y     120      Y     120         17.330
LGA    I     121      I     121         19.700
LGA    K     122      K     122         25.276
LGA    N     123      N     123         29.004
LGA    G     124      G     124         30.067
LGA    I     125      I     125         34.427
LGA    P     126      P     126         36.550
LGA    N     127      N     127         38.879
LGA    L     128      L     128         41.525
LGA    L     129      L     129         44.447
LGA    L     130      L     130         41.612
LGA    P     131      P     131         41.205
LGA    P     132      P     132         45.776
LGA    H     133      H     133         45.461
LGA    L     134      L     134         41.886
LGA    V     135      V     135         43.296

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  135  135    4.0     24    1.89    20.000    16.946     1.207

LGA_LOCAL      RMSD =  1.888  Number of atoms =   24  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 20.736  Number of atoms =  135 
Std_ALL_ATOMS  RMSD = 14.689  (standard rmsd on all 135 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.159264 * X  +  -0.145123 * Y  +   0.976511 * Z  +  24.273291
  Y_new =  -0.881009 * X  +   0.425451 * Y  +   0.206916 * Z  +  -6.389904
  Z_new =  -0.445486 * X  +  -0.893269 * Y  +  -0.060096 * Z  +  10.542784 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -1.637971    1.503621  [ DEG:   -93.8488     86.1512 ]
  Theta =   0.461718    2.679875  [ DEG:    26.4545    153.5455 ]
  Phi   =  -1.391954    1.749639  [ DEG:   -79.7531    100.2469 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0319TS168_4                                  
REMARK     2: T0319.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0319TS168_4.T0319.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  135  135   4.0   24   1.89  16.946    14.69
REMARK  ---------------------------------------------------------- 
MOLECULE T0319TS168_4
PFRMAT TS
TARGET T0319
MODEL 4
PARENT N/A
ATOM      1  CA  MET     1      14.287  -2.035  -1.881  1.00 25.00           C
ATOM      2  CA  LYS     2      17.135  -3.805  -0.064  1.00 25.00           C
ATOM      3  CA  PHE     3      20.454  -4.504   1.719  1.00 25.00           C
ATOM      4  CA  LEU     4      20.512  -4.248   5.501  1.00 25.00           C
ATOM      5  CA  THR     5      19.271  -2.358   8.548  1.00 25.00           C
ATOM      6  CA  THR     6      19.850  -2.287  12.272  1.00 25.00           C
ATOM      7  CA  ASN     7      16.220  -3.132  12.970  1.00 25.00           C
ATOM      8  CA  PHE     8      13.821  -2.392  15.898  1.00 25.00           C
ATOM      9  CA  LEU     9      16.001  -3.247  18.933  1.00 25.00           C
ATOM     10  CA  LYS    10      16.533  -0.250  21.154  1.00 25.00           C
ATOM     11  CA  CYS    11      14.143   1.733  18.940  1.00 25.00           C
ATOM     12  CA  SER    12      11.498   0.192  21.185  1.00 25.00           C
ATOM     13  CA  VAL    13       8.119   1.135  19.658  1.00 25.00           C
ATOM     14  CA  LYS    14       6.788   4.558  18.944  1.00 25.00           C
ATOM     15  CA  ALA    15       9.202   4.806  16.080  1.00 25.00           C
ATOM     16  CA  CYS    16      10.372   1.813  14.073  1.00 25.00           C
ATOM     17  CA  ASP    17       6.687   1.575  13.167  1.00 25.00           C
ATOM     18  CA  THR    18       5.074  -1.057  15.408  1.00 25.00           C
ATOM     19  CA  SER    19       7.729  -3.350  16.835  1.00 25.00           C
ATOM     20  CA  ASN    20       6.486  -6.123  14.547  1.00 25.00           C
ATOM     21  CA  ASP    21       7.904  -6.390  11.065  1.00 25.00           C
ATOM     22  CA  ASN    22       8.362  -2.895   9.678  1.00 25.00           C
ATOM     23  CA  PHE    23      12.119  -3.265   9.734  1.00 25.00           C
ATOM     24  CA  PRO    24      14.482  -1.578   7.223  1.00 25.00           C
ATOM     25  CA  LEU    25      14.615   1.172   9.927  1.00 25.00           C
ATOM     26  CA  GLN    26      15.786   2.082  13.473  1.00 25.00           C
ATOM     27  CA  TYR    27      19.040   1.607  15.442  1.00 25.00           C
ATOM     28  CA  ASP    28      19.505   3.799  18.490  1.00 25.00           C
ATOM     29  CA  GLY    29      23.070   4.131  19.789  1.00 25.00           C
ATOM     30  CA  SER    30      24.122   0.827  21.413  1.00 25.00           C
ATOM     31  CA  LYS    31      22.483  -1.146  18.610  1.00 25.00           C
ATOM     32  CA  CYS    32      20.908  -4.110  16.744  1.00 25.00           C
ATOM     33  CA  GLN    33      18.541  -6.646  15.151  1.00 25.00           C
ATOM     34  CA  LEU    34      18.397  -7.511  11.452  1.00 25.00           C
ATOM     35  CA  VAL    35      15.922  -6.417   8.846  1.00 25.00           C
ATOM     36  CA  GLN    36      15.582 -10.118   8.227  1.00 25.00           C
ATOM     37  CA  ASP    37      12.815 -12.035   6.455  1.00 25.00           C
ATOM     38  CA  GLU    38      11.418 -14.867   8.580  1.00 25.00           C
ATOM     39  CA  SER    39      10.537 -18.380   9.569  1.00 25.00           C
ATOM     40  CA  ILE    40      14.003 -19.907   8.899  1.00 25.00           C
ATOM     41  CA  GLU    41      14.206 -22.386  11.810  1.00 25.00           C
ATOM     42  CA  PHE    42      17.965 -21.967  12.514  1.00 25.00           C
ATOM     43  CA  ASN    43      18.471 -18.311  13.309  1.00 25.00           C
ATOM     44  CA  PRO    44      22.220 -18.918  12.626  1.00 25.00           C
ATOM     45  CA  GLU    45      21.160 -19.134   8.953  1.00 25.00           C
ATOM     46  CA  PHE    46      19.756 -15.574   9.124  1.00 25.00           C
ATOM     47  CA  LEU    47      23.033 -14.331  10.668  1.00 25.00           C
ATOM     48  CA  LEU    48      25.026 -16.058   7.891  1.00 25.00           C
ATOM     49  CA  ASN    49      22.785 -14.438   5.241  1.00 25.00           C
ATOM     50  CA  ILE    50      23.298 -11.009   6.869  1.00 25.00           C
ATOM     51  CA  VAL    51      27.089 -11.556   6.884  1.00 25.00           C
ATOM     52  CA  ASP    52      26.987 -12.531   3.181  1.00 25.00           C
ATOM     53  CA  ARG    53      24.677  -9.670   2.088  1.00 25.00           C
ATOM     54  CA  VAL    54      26.241  -7.143   4.373  1.00 25.00           C
ATOM     55  CA  ASP    55      26.765  -5.934   7.988  1.00 25.00           C
ATOM     56  CA  TRP    56      23.813  -6.109  10.379  1.00 25.00           C
ATOM     57  CA  PRO    57      24.953  -9.609  11.436  1.00 25.00           C
ATOM     58  CA  ALA    58      27.972  -8.106  13.251  1.00 25.00           C
ATOM     59  CA  VAL    59      25.682  -5.617  15.049  1.00 25.00           C
ATOM     60  CA  LEU    60      23.357  -8.475  16.094  1.00 25.00           C
ATOM     61  CA  THR    61      26.352 -10.461  17.418  1.00 25.00           C
ATOM     62  CA  VAL    62      27.535  -7.404  19.398  1.00 25.00           C
ATOM     63  CA  ALA    63      24.026  -6.970  20.872  1.00 25.00           C
ATOM     64  CA  ALA    64      23.960 -10.668  21.866  1.00 25.00           C
ATOM     65  CA  GLU    65      27.389 -10.308  23.532  1.00 25.00           C
ATOM     66  CA  LEU    66      26.163  -7.225  25.445  1.00 25.00           C
ATOM     67  CA  GLY    67      27.147  -9.068  28.624  1.00 25.00           C
ATOM     68  CA  ASN    68      26.381 -10.813  31.850  1.00 25.00           C
ATOM     69  CA  ASN    69      26.262 -14.366  30.550  1.00 25.00           C
ATOM     70  CA  ALA    70      28.538 -16.486  28.314  1.00 25.00           C
ATOM     71  CA  LEU    71      31.128 -17.118  31.053  1.00 25.00           C
ATOM     72  CA  PRO    72      32.383 -19.774  28.547  1.00 25.00           C
ATOM     73  CA  PRO    73      35.189 -21.211  30.691  1.00 25.00           C
ATOM     74  CA  THR    74      38.644 -20.026  31.760  1.00 25.00           C
ATOM     75  CA  LYS    75      40.799 -19.958  28.652  1.00 25.00           C
ATOM     76  CA  PRO    76      39.712 -22.894  26.464  1.00 25.00           C
ATOM     77  CA  SER    77      39.971 -25.695  23.926  1.00 25.00           C
ATOM     78  CA  PHE    78      38.986 -24.908  20.318  1.00 25.00           C
ATOM     79  CA  PRO    79      40.988 -26.733  17.582  1.00 25.00           C
ATOM     80  CA  SER    80      44.453 -25.119  17.215  1.00 25.00           C
ATOM     81  CA  SER    81      43.608 -21.409  16.958  1.00 25.00           C
ATOM     82  CA  ILE    82      44.748 -18.900  14.281  1.00 25.00           C
ATOM     83  CA  GLN    83      46.766 -15.827  13.299  1.00 25.00           C
ATOM     84  CA  GLU    84      45.605 -14.507   9.917  1.00 25.00           C
ATOM     85  CA  LEU    85      42.516 -16.197   8.555  1.00 25.00           C
ATOM     86  CA  THR    86      39.326 -15.100  10.222  1.00 25.00           C
ATOM     87  CA  ASP    87      41.067 -11.691  10.362  1.00 25.00           C
ATOM     88  CA  ASP    88      38.877 -10.428   7.485  1.00 25.00           C
ATOM     89  CA  ASP    89      35.738 -11.663   9.300  1.00 25.00           C
ATOM     90  CA  MET    90      36.860  -9.885  12.501  1.00 25.00           C
ATOM     91  CA  ALA    91      37.451  -6.655  10.529  1.00 25.00           C
ATOM     92  CA  ILE    92      33.965  -6.942   8.968  1.00 25.00           C
ATOM     93  CA  LEU    93      32.427  -7.459  12.437  1.00 25.00           C
ATOM     94  CA  ASN    94      34.288  -4.380  13.749  1.00 25.00           C
ATOM     95  CA  ASP    95      33.022  -2.320  10.779  1.00 25.00           C
ATOM     96  CA  LEU    96      29.442  -3.501  11.454  1.00 25.00           C
ATOM     97  CA  HIS    97      29.793  -2.538  15.144  1.00 25.00           C
ATOM     98  CA  THR    98      31.093   0.923  14.142  1.00 25.00           C
ATOM     99  CA  LEU    99      28.132   1.370  11.755  1.00 25.00           C
ATOM    100  CA  LEU   100      25.702   0.367  14.541  1.00 25.00           C
ATOM    101  CA  LEU   101      27.348   2.880  16.916  1.00 25.00           C
ATOM    102  CA  GLN   102      27.048   5.624  14.260  1.00 25.00           C
ATOM    103  CA  THR   103      23.335   4.865  14.277  1.00 25.00           C
ATOM    104  CA  SER   104      20.060   4.851  12.409  1.00 25.00           C
ATOM    105  CA  ILE   105      18.616   8.296  11.499  1.00 25.00           C
ATOM    106  CA  ALA   106      15.852   8.971   8.924  1.00 25.00           C
ATOM    107  CA  GLU   107      17.537  10.546   5.899  1.00 25.00           C
ATOM    108  CA  GLY   108      16.621   7.568   3.668  1.00 25.00           C
ATOM    109  CA  GLU   109      15.396   4.153   4.833  1.00 25.00           C
ATOM    110  CA  MET   110      17.826   4.184   7.723  1.00 25.00           C
ATOM    111  CA  LYS   111      20.944   6.175   6.646  1.00 25.00           C
ATOM    112  CA  CYS   112      23.547   7.211   9.209  1.00 25.00           C
ATOM    113  CA  ARG   113      25.272   9.757  11.453  1.00 25.00           C
ATOM    114  CA  ASN   114      28.963  10.820  11.795  1.00 25.00           C
ATOM    115  CA  CYS   115      30.307   7.454  10.619  1.00 25.00           C
ATOM    116  CA  GLY   116      29.940   6.606   6.947  1.00 25.00           C
ATOM    117  CA  HIS   117      28.242   3.227   6.706  1.00 25.00           C
ATOM    118  CA  ILE   118      25.002   2.338   8.463  1.00 25.00           C
ATOM    119  CA  TYR   119      22.134   1.230   6.261  1.00 25.00           C
ATOM    120  CA  TYR   120      19.192   0.840   3.868  1.00 25.00           C
ATOM    121  CA  ILE   121      21.849   0.883   1.185  1.00 25.00           C
ATOM    122  CA  LYS   122      23.234   1.697  -2.316  1.00 25.00           C
ATOM    123  CA  ASN   123      24.859   2.327  -5.682  1.00 25.00           C
ATOM    124  CA  GLY   124      27.015   2.920  -8.806  1.00 25.00           C
ATOM    125  CA  ILE   125      24.781   1.731 -11.700  1.00 25.00           C
ATOM    126  CA  PRO   126      27.019   0.153 -14.293  1.00 25.00           C
ATOM    127  CA  ASN   127      27.313  -3.348 -12.762  1.00 25.00           C
ATOM    128  CA  LEU   128      27.850  -4.334 -16.362  1.00 25.00           C
ATOM    129  CA  LEU   129      27.629  -8.112 -16.506  1.00 25.00           C
ATOM    130  CA  LEU   130      24.840 -10.503 -15.460  1.00 25.00           C
ATOM    131  CA  PRO   131      23.084 -13.852 -14.808  1.00 25.00           C
ATOM    132  CA  PRO   132      25.997 -16.225 -15.546  1.00 25.00           C
ATOM    133  CA  HIS   133      29.406 -16.737 -17.164  1.00 25.00           C
ATOM    134  CA  LEU   134      32.669 -14.853 -16.538  1.00 25.00           C
ATOM    135  CA  VAL   135      35.543 -17.042 -17.720  1.00 25.00           C
TER
END
