
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  135 (  135),  selected  135 , name T0319TS168_5
# Molecule2: number of CA atoms  135 ( 1055),  selected  135 , name T0319.pdb
# PARAMETERS: T0319TS168_5.T0319.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    32        79 - 110         4.82    18.85
  LONGEST_CONTINUOUS_SEGMENT:    32        80 - 111         4.91    19.26
  LCS_AVERAGE:     17.36

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    20        86 - 105         1.82    18.42
  LCS_AVERAGE:      7.48

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    16        86 - 101         0.66    18.94
  LCS_AVERAGE:      4.90

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  135
LCS_GDT     M       1     M       1      4    4   15     3    4    4    4    7    8   12   15   18   21   22   26   29   34   35   43   46   48   53   54 
LCS_GDT     K       2     K       2      4    4   15     3    4    4    7   10   11   15   15   18   21   22   26   29   34   38   43   46   48   53   56 
LCS_GDT     F       3     F       3      4    4   15     3    4    4    5    7    7   12   15   18   21   22   25   29   34   35   43   46   49   56   58 
LCS_GDT     L       4     L       4      4    4   24     3    4    4    5    7    7   12   22   23   25   28   34   37   40   42   43   46   49   56   58 
LCS_GDT     T       5     T       5      4    6   24     3    4    8   11   17   19   20   22   27   29   32   34   37   40   42   43   46   49   56   58 
LCS_GDT     T       6     T       6      4    6   24     3    4    8   11   12   13   19   21   27   29   32   34   37   40   42   43   46   49   56   58 
LCS_GDT     N       7     N       7      4    6   24     3    4    8   11   12   13   14   19   26   29   32   34   37   40   42   43   46   49   56   58 
LCS_GDT     F       8     F       8      4    6   24     3    5    8   11   12   13   14   19   22   28   32   34   37   40   42   43   46   49   56   58 
LCS_GDT     L       9     L       9      3    6   24     2    3    6   10   13   13   19   21   27   29   32   34   37   40   42   43   46   49   56   58 
LCS_GDT     K      10     K      10      3    6   24     3    3    8   11   12   13   17   21   27   29   32   34   37   40   42   43   46   49   56   58 
LCS_GDT     C      11     C      11      3    6   24     3    3    3    7   10   12   19   21   27   29   32   34   37   40   42   43   46   49   56   58 
LCS_GDT     S      12     S      12      3    6   24     3    3    4    6    8   13   19   21   27   29   32   34   37   40   42   43   46   48   53   54 
LCS_GDT     V      13     V      13      4    5   24     3    3    4    6   10   13   19   21   27   29   32   34   37   40   42   43   46   48   56   58 
LCS_GDT     K      14     K      14      4    5   24     3    3    4    5    7    8   13   18   22   27   32   34   37   39   42   43   46   48   56   58 
LCS_GDT     A      15     A      15      4    5   24     3    3    4    6    7    8    9   12   16   18   20   22   27   30   38   41   44   48   56   58 
LCS_GDT     C      16     C      16      4    5   24     3    3    4    6    7    8    9   12   16   18   20   22   23   30   34   38   43   49   56   58 
LCS_GDT     D      17     D      17      4    5   24     3    3    4    5    6    7    9   10   12   15   20   23   28   33   38   40   45   49   56   58 
LCS_GDT     T      18     T      18      3    5   24     3    3    3    6    7    8   10   14   16   18   20   23   26   30   34   38   45   49   56   58 
LCS_GDT     S      19     S      19      4    5   24     3    4    4    5    5    8   10   14   16   18   20   23   29   31   34   38   45   49   52   56 
LCS_GDT     N      20     N      20      4    5   24     3    4    4    6    8    8   10   20   21   24   26   28   29   32   34   38   45   49   52   56 
LCS_GDT     D      21     D      21      4    5   24     3    4    5    6    7    9   10   14   16   18   20   28   29   31   33   37   41   48   52   55 
LCS_GDT     N      22     N      22      4    8   24     3    4    5    6    8    9   10   15   20   24   26   28   30   32   35   38   45   48   52   56 
LCS_GDT     F      23     F      23      4    8   24     4    4    5    7    8    9   10   14   20   24   26   28   30   32   35   38   45   48   52   56 
LCS_GDT     P      24     P      24      4    8   24     4    4    5    7   13   17   20   22   23   24   26   28   31   32   35   38   45   49   56   58 
LCS_GDT     L      25     L      25      4    8   24     4    4    5    7    8    9   10   15   19   23   26   28   29   31   34   38   45   49   56   58 
LCS_GDT     Q      26     Q      26      4    8   24     4    4    5    7   13   13   14   16   17   18   20   23   27   29   34   38   45   49   56   58 
LCS_GDT     Y      27     Y      27      3    8   24     1    3    5    7    8   10   13   16   17   18   21   23   27   29   34   38   45   49   56   58 
LCS_GDT     D      28     D      28      5    8   24     4    4    5    7   10   11   15   15   16   18   21   23   27   29   34   38   45   49   56   58 
LCS_GDT     G      29     G      29      5    8   19     4    4    5    7    8   11   15   15   16   18   21   23   27   29   34   38   45   49   56   58 
LCS_GDT     S      30     S      30      5   11   19     4    4    5    6    9   11   15   15   16   18   21   23   27   29   34   38   45   49   56   58 
LCS_GDT     K      31     K      31      5   11   19     4    4    5    8   10   11   15   15   16   18   21   23   27   29   34   38   45   49   56   58 
LCS_GDT     C      32     C      32      5   11   19     3    4    6    8   10   11   15   15   16   18   21   23   27   29   34   38   45   49   53   58 
LCS_GDT     Q      33     Q      33      4   11   19     3    4    6    8   10   11   15   15   16   18   21   23   26   29   31   35   39   44   49   55 
LCS_GDT     L      34     L      34      4   11   19     3    4    6    7   10   11   15   15   16   18   21   23   26   29   31   34   39   44   49   55 
LCS_GDT     V      35     V      35      4   11   19     3    4    6    8   10   11   15   15   17   18   22   26   29   31   36   39   40   44   49   55 
LCS_GDT     Q      36     Q      36      4   11   19     3    4    5    8   10   11   15   15   17   18   22   26   30   34   37   41   45   48   53   56 
LCS_GDT     D      37     D      37      4   11   19     3    4    6    8   10   11   15   15   17   26   29   34   36   40   42   43   46   48   53   56 
LCS_GDT     E      38     E      38      4   11   19     3    4    6    8   10   11   15   15   18   21   29   31   36   40   42   43   46   48   53   54 
LCS_GDT     S      39     S      39      4   11   19     3    4    6    8   10   13   19   21   27   29   32   34   37   40   42   43   46   48   53   56 
LCS_GDT     I      40     I      40      4   11   19     3    3    8   11   12   13   19   21   27   29   32   34   37   40   42   43   46   49   56   58 
LCS_GDT     E      41     E      41      4    6   19     3    4    5   11   12   13   19   21   27   29   32   34   37   40   42   43   46   49   56   58 
LCS_GDT     F      42     F      42      4    6   19     3    5    8   11   12   13   19   21   27   29   32   34   37   40   42   43   46   49   56   58 
LCS_GDT     N      43     N      43      4   11   19     3    5    8   11   12   13   19   21   27   29   32   34   37   40   42   43   46   49   56   58 
LCS_GDT     P      44     P      44     10   11   19    10   10   11   11   11   11   11   15   17   19   27   31   37   40   42   43   46   49   56   58 
LCS_GDT     E      45     E      45     10   11   19    10   10   11   11   12   13   19   21   27   29   32   34   37   40   42   43   46   48   56   58 
LCS_GDT     F      46     F      46     10   11   22    10   10   11   11   11   13   14   21   27   29   32   34   37   40   42   43   46   48   53   58 
LCS_GDT     L      47     L      47     10   11   22    10   10   11   11   12   13   19   21   27   29   32   34   37   40   42   43   46   49   56   58 
LCS_GDT     L      48     L      48     10   11   22    10   10   11   11   11   11   12   20   27   29   32   34   37   40   42   43   46   48   56   58 
LCS_GDT     N      49     N      49     10   11   22    10   10   11   11   11   11   13   17   27   29   31   34   37   40   42   43   46   48   53   55 
LCS_GDT     I      50     I      50     10   11   22    10   10   11   11   11   11   13   19   27   29   31   34   37   40   42   43   46   48   53   55 
LCS_GDT     V      51     V      51     10   11   22    10   10   11   11   11   11   13   17   22   28   31   34   37   40   42   43   46   48   53   55 
LCS_GDT     D      52     D      52     10   11   22    10   10   11   11   11   11   13   13   18   21   28   34   36   39   42   43   46   48   53   53 
LCS_GDT     R      53     R      53     10   11   22    10   10   11   11   11   11   13   14   18   21   28   31   36   39   42   43   45   48   53   53 
LCS_GDT     V      54     V      54      4   11   22     4    4    4    5    8   10   13   16   20   23   28   34   36   40   42   43   46   48   53   54 
LCS_GDT     D      55     D      55      4   13   22     4    4    4    7    9   13   14   16   17   19   22   26   34   37   40   42   46   48   53   54 
LCS_GDT     W      56     W      56     12   13   22    11   11   12   12   13   13   15   17   22   27   32   34   37   40   42   43   46   48   56   58 
LCS_GDT     P      57     P      57     12   13   22    11   11   12   12   13   13   14   16   17   18   20   24   27   31   33   37   44   48   56   58 
LCS_GDT     A      58     A      58     12   13   22    11   11   12   12   13   13   14   16   17   18   21   26   33   36   39   41   46   49   56   58 
LCS_GDT     V      59     V      59     12   13   22    11   11   12   12   13   13   14   16   17   19   22   26   32   36   38   41   45   49   56   58 
LCS_GDT     L      60     L      60     12   13   22    11   11   12   12   13   13   14   16   17   19   21   24   27   30   34   38   45   49   56   58 
LCS_GDT     T      61     T      61     12   13   22    11   11   12   12   13   13   14   16   17   19   21   24   26   30   34   38   45   49   56   58 
LCS_GDT     V      62     V      62     12   13   22    11   11   12   12   13   13   15   16   17   19   21   23   27   30   34   38   45   49   56   58 
LCS_GDT     A      63     A      63     12   13   22    11   11   12   12   13   13   15   16   17   18   21   23   27   29   34   38   45   49   52   57 
LCS_GDT     A      64     A      64     12   13   22    11   11   12   12   13   13   14   16   17   18   21   23   27   30   34   38   44   46   51   55 
LCS_GDT     E      65     E      65     12   13   22    11   11   12   12   13   13   14   16   17   18   20   24   27   30   32   36   40   44   49   55 
LCS_GDT     L      66     L      66     12   13   22    11   11   12   12   13   13   14   16   17   18   20   23   26   29   31   32   40   41   49   55 
LCS_GDT     G      67     G      67     12   13   22     3    4   12   12   13   13   14   16   17   18   20   23   26   29   31   32   35   39   44   52 
LCS_GDT     N      68     N      68      3    6   22     3    3    4    5    8    9   12   13   16   18   19   21   22   26   29   31   35   39   43   46 
LCS_GDT     N      69     N      69      3    9   22     3    3    6    8    9    9   13   15   17   18   20   23   26   29   31   35   40   44   49   55 
LCS_GDT     A      70     A      70      4    9   22     3    3    5    8    9   13   14   16   17   18   20   23   27   29   32   36   40   44   49   55 
LCS_GDT     L      71     L      71      4    9   22     3    4    6    8    9   10   12   13   15   18   19   21   22   24   26   31   36   43   48   54 
LCS_GDT     P      72     P      72      4    9   22     3    4    6    8    9   10   11   12   14   17   19   21   22   23   25   28   33   37   48   54 
LCS_GDT     P      73     P      73      5    9   22     3    4    5    8    9   10   11   12   14   16   18   19   22   23   25   28   33   38   44   51 
LCS_GDT     T      74     T      74      5    9   22     3    4    6    8    9   10   11   12   14   16   18   19   20   23   24   27   33   36   43   46 
LCS_GDT     K      75     K      75      5    9   22     1    4    6    8    9   10   11   12   14   16   18   19   20   23   24   26   31   35   40   44 
LCS_GDT     P      76     P      76      5    9   22     3    4    5    8    8   10   12   13   15   16   19   21   22   23   24   26   31   35   40   44 
LCS_GDT     S      77     S      77      5    9   22     3    4    6    8    9   10   12   13   15   16   19   21   22   23   24   27   33   36   40   46 
LCS_GDT     F      78     F      78      4    9   29     3    4    5    6    9   10   11   13   15   16   19   21   22   28   30   34   40   41   46   49 
LCS_GDT     P      79     P      79      4    6   32     3    4    5    6    7   10   11   12   13   14   18   25   29   30   34   37   40   42   46   48 
LCS_GDT     S      80     S      80      4    6   32     3    4    5    6    7   10   13   18   21   24   26   28   31   34   36   39   40   43   46   48 
LCS_GDT     S      81     S      81      3    6   32     3    3    4    5    6   10   12   17   18   22   26   28   31   34   36   39   40   43   46   48 
LCS_GDT     I      82     I      82      3    7   32     3    3    4    5    9   10   11   12   15   16   22   26   29   33   36   39   40   42   43   48 
LCS_GDT     Q      83     Q      83      4    7   32     3    3    4    6    9   12   16   20   23   24   26   28   31   34   36   39   40   42   46   48 
LCS_GDT     E      84     E      84      4    7   32     3    3    4    5    6    8   13   21   23   24   26   28   31   34   36   39   40   43   46   48 
LCS_GDT     L      85     L      85      4   18   32     3    3    4    6    9   15   17   21   23   24   26   28   31   34   36   39   40   43   46   48 
LCS_GDT     T      86     T      86     16   20   32    14   15   15   16   17   19   20   22   24   25   26   28   31   34   36   39   40   43   46   48 
LCS_GDT     D      87     D      87     16   20   32    14   15   15   16   17   19   20   22   24   25   26   28   31   34   36   39   40   43   46   49 
LCS_GDT     D      88     D      88     16   20   32    14   15   15   16   17   19   20   22   24   25   26   28   31   34   36   39   40   43   46   49 
LCS_GDT     D      89     D      89     16   20   32    14   15   15   16   17   19   20   22   24   25   26   28   31   34   36   39   40   43   46   48 
LCS_GDT     M      90     M      90     16   20   32    14   15   15   16   17   19   20   22   24   25   26   28   31   34   36   39   40   43   46   49 
LCS_GDT     A      91     A      91     16   20   32    14   15   15   16   17   19   20   22   24   25   26   28   31   34   36   39   40   43   46   49 
LCS_GDT     I      92     I      92     16   20   32    14   15   15   16   17   19   20   22   24   25   26   28   31   34   36   39   40   43   46   49 
LCS_GDT     L      93     L      93     16   20   32    14   15   15   16   17   19   20   22   24   25   26   28   31   34   36   39   40   43   46   49 
LCS_GDT     N      94     N      94     16   20   32    14   15   15   16   17   19   20   22   24   25   26   28   31   34   36   39   40   43   46   50 
LCS_GDT     D      95     D      95     16   20   32    14   15   15   16   17   19   20   22   24   25   26   28   31   34   36   39   40   43   46   50 
LCS_GDT     L      96     L      96     16   20   32    14   15   15   16   17   19   20   22   24   25   26   28   31   34   36   39   40   43   46   50 
LCS_GDT     H      97     H      97     16   20   32    14   15   15   16   17   19   20   22   24   25   26   28   31   34   36   39   40   45   51   55 
LCS_GDT     T      98     T      98     16   20   32    14   15   15   16   17   19   20   22   24   25   26   28   31   34   36   39   43   48   56   58 
LCS_GDT     L      99     L      99     16   20   32    14   15   15   16   17   19   20   22   24   25   26   28   32   36   39   41   44   48   56   58 
LCS_GDT     L     100     L     100     16   20   32     4   15   15   16   17   19   20   22   24   27   32   34   37   40   42   43   46   49   56   58 
LCS_GDT     L     101     L     101     16   20   32     3    6   15   16   17   19   20   22   24   25   26   32   36   39   42   43   46   49   56   58 
LCS_GDT     Q     102     Q     102      7   20   32     3    6    6   11   17   19   20   22   24   25   26   28   32   36   39   41   45   49   56   58 
LCS_GDT     T     103     T     103      7   20   32     3    6   10   14   17   19   20   22   24   27   32   34   37   40   42   43   46   49   56   58 
LCS_GDT     S     104     S     104      7   20   32     3    6    9   15   17   19   20   22   27   29   32   34   37   40   42   43   46   49   56   58 
LCS_GDT     I     105     I     105      7   20   32     3    6    6    9   15   19   20   22   27   29   32   34   37   40   42   43   46   48   56   58 
LCS_GDT     A     106     A     106      4    9   32     3    3    4    5    8   13   16   21   27   29   32   34   37   40   42   43   46   48   56   58 
LCS_GDT     E     107     E     107      4    9   32     0    3    5    9   10   14   19   21   27   29   32   34   37   40   42   43   46   48   53   58 
LCS_GDT     G     108     G     108      3    7   32     3    5    5    7   11   13   19   21   27   29   32   34   37   40   42   43   46   48   56   58 
LCS_GDT     E     109     E     109      3    7   32     3    3    6    9   10   12   15   17   25   29   32   34   37   40   42   43   46   48   56   58 
LCS_GDT     M     110     M     110      4    7   32     3    4    5    8   10   12   16   21   27   29   32   34   37   40   42   43   46   49   56   58 
LCS_GDT     K     111     K     111      4    7   32     3    4    5    7   10   12   19   21   27   29   32   34   37   40   42   43   46   49   56   58 
LCS_GDT     C     112     C     112      4    7   19     3    4    5    6    8   12   14   17   27   29   32   34   37   40   42   43   46   49   56   58 
LCS_GDT     R     113     R     113      4    8   19     3    4    6    9   10   13   19   21   27   29   32   34   37   40   42   43   46   48   53   54 
LCS_GDT     N     114     N     114      3    8   19     3    4    5    9   10   11   13   16   20   28   29   34   36   40   42   43   46   48   53   54 
LCS_GDT     C     115     C     115      3    8   19     3    3    6    9   10   11   11   13   14   16   20   25   29   34   35   41   45   47   53   54 
LCS_GDT     G     116     G     116      5    8   19     3    4    5    7    8    8   10   13   14   16   18   24   29   31   35   41   45   47   53   54 
LCS_GDT     H     117     H     117      5    8   19     3    5    6    9   10   11   11   13   14   16   17   19   19   21   27   34   37   44   50   54 
LCS_GDT     I     118     I     118      5    8   19     3    5    5    9   10   11   11   13   14   15   18   23   29   31   35   41   45   49   53   56 
LCS_GDT     Y     119     Y     119      5    8   19     3    5    6    9   10   11   11   13   14   16   19   23   29   31   36   41   45   49   53   56 
LCS_GDT     Y     120     Y     120      5    8   19     2    5    6    9   10   11   11   13   14   16   19   23   29   31   37   41   45   49   56   58 
LCS_GDT     I     121     I     121      4    7   19     3    3    5    5    7    8   10   13   14   16   19   23   27   31   36   41   45   49   56   58 
LCS_GDT     K     122     K     122      4    6   19     3    3    5    5    7    8   10   11   14   16   19   23   27   31   34   38   45   49   56   58 
LCS_GDT     N     123     N     123      4    6   19     3    4    5    5    8    9   10   11   15   17   20   23   26   31   34   38   45   49   56   58 
LCS_GDT     G     124     G     124      4    6   19     3    4    5    5    6    9   10   10   13   17   20   23   25   28   31   35   40   46   51   55 
LCS_GDT     I     125     I     125      4    6   19     3    4    5    5    5    9   10   10   11   11   14   17   22   23   27   33   37   40   44   47 
LCS_GDT     P     126     P     126      4    6   14     3    4    5    5    6    9   10   10   11   11   14   15   16   20   23   24   24   33   35   36 
LCS_GDT     N     127     N     127      4    6   14     1    4    5    5    6    7   10   10   11   11   14   15   16   20   23   24   26   33   35   36 
LCS_GDT     L     128     L     128      3    6   14     0    3    5    5    6    9   10   10   11   11   14   15   16   20   23   24   26   27   35   36 
LCS_GDT     L     129     L     129      3    6   14     1    3    4    5    6    9   10   10   11   11   13   14   16   20   23   26   28   33   35   43 
LCS_GDT     L     130     L     130      3    6   14     1    3    5    5    6    9   10   10   11   13   14   16   17   23   26   26   29   32   36   39 
LCS_GDT     P     131     P     131      3    6   14     1    3    4    5    6    9   10   10   11   13   14   18   20   23   26   27   29   33   36   39 
LCS_GDT     P     132     P     132      3    6   14     0    3    5    5    6    9   10   10   14   16   19   20   22   24   26   29   33   35   37   41 
LCS_GDT     H     133     H     133      3    5   14     0    3    5    5    6    7    8    9   11   16   18   19   22   23   26   29   32   33   37   39 
LCS_GDT     L     134     L     134      3    5   14     1    3    5    5    6    7    8    9   11   13   15   18   21   23   26   27   29   33   36   39 
LCS_GDT     V     135     V     135      3    4   14     0    3    3    4    6    7    8    8   11   12   14   16   17   23   26   26   29   31   32   34 
LCS_AVERAGE  LCS_A:   9.91  (   4.90    7.48   17.36 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     14     15     15     16     17     19     20     22     27     29     32     34     37     40     42     43     46     49     56     58 
GDT PERCENT_CA  10.37  11.11  11.11  11.85  12.59  14.07  14.81  16.30  20.00  21.48  23.70  25.19  27.41  29.63  31.11  31.85  34.07  36.30  41.48  42.96
GDT RMS_LOCAL    0.17   0.32   0.32   0.66   0.88   1.46   1.64   2.06   3.31   3.42   3.81   3.90   4.20   4.53   4.71   4.84   5.20   6.96   7.44   7.55
GDT RMS_ALL_CA  19.09  19.05  19.05  18.94  18.87  18.56  18.58  18.42  20.28  20.26  19.26  19.84  19.71  20.35  20.05  20.07  20.20  17.56  16.95  16.82

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         11.489
LGA    K       2      K       2         10.150
LGA    F       3      F       3          8.427
LGA    L       4      L       4          3.651
LGA    T       5      T       5          3.788
LGA    T       6      T       6          6.027
LGA    N       7      N       7          7.690
LGA    F       8      F       8          7.542
LGA    L       9      L       9         11.680
LGA    K      10      K      10         14.265
LGA    C      11      C      11         18.652
LGA    S      12      S      12         23.218
LGA    V      13      V      13         23.013
LGA    K      14      K      14         20.088
LGA    A      15      A      15         20.730
LGA    C      16      C      16         17.101
LGA    D      17      D      17         11.668
LGA    T      18      T      18         10.639
LGA    S      19      S      19          9.040
LGA    N      20      N      20          8.449
LGA    D      21      D      21         11.631
LGA    N      22      N      22          8.094
LGA    F      23      F      23          7.777
LGA    P      24      P      24          4.363
LGA    L      25      L      25          9.840
LGA    Q      26      Q      26         15.320
LGA    Y      27      Y      27         17.557
LGA    D      28      D      28         22.468
LGA    G      29      G      29         22.805
LGA    S      30      S      30         23.519
LGA    K      31      K      31         21.799
LGA    C      32      C      32         18.688
LGA    Q      33      Q      33         17.414
LGA    L      34      L      34         15.740
LGA    V      35      V      35         12.470
LGA    Q      36      Q      36         11.127
LGA    D      37      D      37         10.995
LGA    E      38      E      38         17.052
LGA    S      39      S      39         16.011
LGA    I      40      I      40         12.844
LGA    E      41      E      41         16.264
LGA    F      42      F      42         16.005
LGA    N      43      N      43         15.733
LGA    P      44      P      44         16.220
LGA    E      45      E      45         13.982
LGA    F      46      F      46          7.872
LGA    L      47      L      47         10.915
LGA    L      48      L      48         17.149
LGA    N      49      N      49         15.401
LGA    I      50      I      50         12.558
LGA    V      51      V      51         17.493
LGA    D      52      D      52         22.678
LGA    R      53      R      53         21.304
LGA    V      54      V      54         19.916
LGA    D      55      D      55         21.456
LGA    W      56      W      56         18.113
LGA    P      57      P      57         20.655
LGA    A      58      A      58         15.732
LGA    V      59      V      59         15.079
LGA    L      60      L      60         20.550
LGA    T      61      T      61         20.760
LGA    V      62      V      62         18.924
LGA    A      63      A      63         22.173
LGA    A      64      A      64         26.809
LGA    E      65      E      65         26.119
LGA    L      66      L      66         27.791
LGA    G      67      G      67         32.974
LGA    N      68      N      68         33.408
LGA    N      69      N      69         35.921
LGA    A      70      A      70         35.085
LGA    L      71      L      71         30.612
LGA    P      72      P      72         31.331
LGA    P      73      P      73         34.954
LGA    T      74      T      74         32.170
LGA    K      75      K      75         29.589
LGA    P      76      P      76         25.506
LGA    S      77      S      77         22.319
LGA    F      78      F      78         15.053
LGA    P      79      P      79         11.101
LGA    S      80      S      80          8.149
LGA    S      81      S      81         10.003
LGA    I      82      I      82         11.876
LGA    Q      83      Q      83          9.189
LGA    E      84      E      84          7.915
LGA    L      85      L      85          7.274
LGA    T      86      T      86          1.421
LGA    D      87      D      87          1.235
LGA    D      88      D      88          0.233
LGA    D      89      D      89          0.821
LGA    M      90      M      90          1.109
LGA    A      91      A      91          1.036
LGA    I      92      I      92          0.702
LGA    L      93      L      93          0.640
LGA    N      94      N      94          0.989
LGA    D      95      D      95          1.265
LGA    L      96      L      96          1.012
LGA    H      97      H      97          0.198
LGA    T      98      T      98          1.464
LGA    L      99      L      99          2.008
LGA    L     100      L     100          2.100
LGA    L     101      L     101          3.026
LGA    Q     102      Q     102          3.394
LGA    T     103      T     103          1.955
LGA    S     104      S     104          2.117
LGA    I     105      I     105          3.933
LGA    A     106      A     106          7.683
LGA    E     107      E     107          8.579
LGA    G     108      G     108          7.616
LGA    E     109      E     109         10.170
LGA    M     110      M     110         11.514
LGA    K     111      K     111         15.784
LGA    C     112      C     112         20.009
LGA    R     113      R     113         20.935
LGA    N     114      N     114         27.910
LGA    C     115      C     115         31.039
LGA    G     116      G     116         28.645
LGA    H     117      H     117         27.608
LGA    I     118      I     118         21.997
LGA    Y     119      Y     119         18.370
LGA    Y     120      Y     120         13.543
LGA    I     121      I     121         13.471
LGA    K     122      K     122         16.757
LGA    N     123      N     123         16.238
LGA    G     124      G     124         17.875
LGA    I     125      I     125         20.690
LGA    P     126      P     126         21.241
LGA    N     127      N     127         23.417
LGA    L     128      L     128         23.755
LGA    L     129      L     129         25.050
LGA    L     130      L     130         26.836
LGA    P     131      P     131         32.147
LGA    P     132      P     132         32.935
LGA    H     133      H     133         33.686
LGA    L     134      L     134         31.480
LGA    V     135      V     135         37.128

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  135  135    4.0     22    2.06    17.778    15.341     1.020

LGA_LOCAL      RMSD =  2.057  Number of atoms =   22  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 18.417  Number of atoms =  135 
Std_ALL_ATOMS  RMSD = 15.116  (standard rmsd on all 135 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.260654 * X  +   0.222459 * Y  +   0.939453 * Z  +  25.232464
  Y_new =   0.928373 * X  +   0.324778 * Y  +   0.180673 * Z  +  -2.142251
  Z_new =  -0.264922 * X  +   0.919256 * Y  +  -0.291179 * Z  +  15.219720 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   1.877553   -1.264039  [ DEG:   107.5759    -72.4241 ]
  Theta =   0.268123    2.873470  [ DEG:    15.3623    164.6377 ]
  Phi   =   1.844513   -1.297079  [ DEG:   105.6828    -74.3172 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0319TS168_5                                  
REMARK     2: T0319.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0319TS168_5.T0319.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  135  135   4.0   22   2.06  15.341    15.12
REMARK  ---------------------------------------------------------- 
MOLECULE T0319TS168_5
PFRMAT TS
TARGET T0319
MODEL 5
PARENT N/A
ATOM      1  CA  MET     1      11.556  -0.869  21.506  1.00 25.00           C
ATOM      2  CA  LYS     2      15.183  -1.899  21.730  1.00 25.00           C
ATOM      3  CA  PHE     3      17.542   0.767  20.561  1.00 25.00           C
ATOM      4  CA  LEU     4      17.737   0.533  16.788  1.00 25.00           C
ATOM      5  CA  THR     5      20.623   1.736  14.574  1.00 25.00           C
ATOM      6  CA  THR     6      21.691   2.499  10.985  1.00 25.00           C
ATOM      7  CA  ASN     7      23.045  -0.873   9.680  1.00 25.00           C
ATOM      8  CA  PHE     8      19.669  -1.887  11.131  1.00 25.00           C
ATOM      9  CA  LEU     9      19.794  -4.552   8.417  1.00 25.00           C
ATOM     10  CA  LYS    10      18.350  -6.213   5.340  1.00 25.00           C
ATOM     11  CA  CYS    11      18.807  -9.410   7.377  1.00 25.00           C
ATOM     12  CA  SER    12      17.526 -12.591   5.766  1.00 25.00           C
ATOM     13  CA  VAL    13      15.614 -10.128   3.558  1.00 25.00           C
ATOM     14  CA  LYS    14      12.337 -10.739   5.488  1.00 25.00           C
ATOM     15  CA  ALA    15      14.043 -10.854   8.925  1.00 25.00           C
ATOM     16  CA  CYS    16      15.232  -7.880  10.996  1.00 25.00           C
ATOM     17  CA  ASP    17      11.612  -7.990  12.284  1.00 25.00           C
ATOM     18  CA  THR    18       9.709  -7.279   9.069  1.00 25.00           C
ATOM     19  CA  SER    19       9.501  -3.474   9.111  1.00 25.00           C
ATOM     20  CA  ASN    20       8.058  -3.980  12.563  1.00 25.00           C
ATOM     21  CA  ASP    21      10.275  -2.398  15.158  1.00 25.00           C
ATOM     22  CA  ASN    22      10.781   0.954  13.463  1.00 25.00           C
ATOM     23  CA  PHE    23      14.310   1.679  12.349  1.00 25.00           C
ATOM     24  CA  PRO    24      14.756  -1.817  10.815  1.00 25.00           C
ATOM     25  CA  LEU    25      15.303  -3.223  14.344  1.00 25.00           C
ATOM     26  CA  GLN    26      18.413  -5.411  14.457  1.00 25.00           C
ATOM     27  CA  TYR    27      21.505  -7.395  13.370  1.00 25.00           C
ATOM     28  CA  ASP    28      23.812  -9.169  10.909  1.00 25.00           C
ATOM     29  CA  GLY    29      26.924 -10.133   9.002  1.00 25.00           C
ATOM     30  CA  SER    30      26.598  -7.772   5.975  1.00 25.00           C
ATOM     31  CA  LYS    31      25.641  -4.947   8.325  1.00 25.00           C
ATOM     32  CA  CYS    32      25.428  -4.549  12.106  1.00 25.00           C
ATOM     33  CA  GLN    33      23.177  -2.740  14.661  1.00 25.00           C
ATOM     34  CA  LEU    34      21.574  -2.546  18.112  1.00 25.00           C
ATOM     35  CA  VAL    35      22.656   0.937  19.131  1.00 25.00           C
ATOM     36  CA  GLN    36      21.328   4.132  20.678  1.00 25.00           C
ATOM     37  CA  ASP    37      20.113   6.429  23.439  1.00 25.00           C
ATOM     38  CA  GLU    38      18.279   6.676  26.737  1.00 25.00           C
ATOM     39  CA  SER    39      18.768  10.172  28.178  1.00 25.00           C
ATOM     40  CA  ILE    40      21.980  10.787  26.290  1.00 25.00           C
ATOM     41  CA  GLU    41      24.218  11.622  29.312  1.00 25.00           C
ATOM     42  CA  PHE    42      25.862   8.292  28.554  1.00 25.00           C
ATOM     43  CA  ASN    43      25.410   4.870  30.243  1.00 25.00           C
ATOM     44  CA  PRO    44      24.662   1.583  28.394  1.00 25.00           C
ATOM     45  CA  GLU    45      28.145   0.172  29.134  1.00 25.00           C
ATOM     46  CA  PHE    46      28.150  -1.649  25.765  1.00 25.00           C
ATOM     47  CA  LEU    47      27.134   1.587  23.987  1.00 25.00           C
ATOM     48  CA  LEU    48      29.950   3.477  25.764  1.00 25.00           C
ATOM     49  CA  ASN    49      32.456   0.777  24.715  1.00 25.00           C
ATOM     50  CA  ILE    50      31.237   1.018  21.093  1.00 25.00           C
ATOM     51  CA  VAL    51      31.623   4.827  21.190  1.00 25.00           C
ATOM     52  CA  ASP    52      35.176   4.456  22.569  1.00 25.00           C
ATOM     53  CA  ARG    53      36.033   1.907  19.924  1.00 25.00           C
ATOM     54  CA  VAL    54      35.728  -1.488  21.674  1.00 25.00           C
ATOM     55  CA  ASP    55      33.543  -4.355  22.780  1.00 25.00           C
ATOM     56  CA  TRP    56      32.410  -4.210  19.170  1.00 25.00           C
ATOM     57  CA  PRO    57      29.076  -3.158  20.734  1.00 25.00           C
ATOM     58  CA  ALA    58      27.175  -4.783  17.835  1.00 25.00           C
ATOM     59  CA  VAL    59      29.193  -8.006  18.285  1.00 25.00           C
ATOM     60  CA  LEU    60      28.418  -7.997  22.035  1.00 25.00           C
ATOM     61  CA  THR    61      24.693  -7.511  21.290  1.00 25.00           C
ATOM     62  CA  VAL    62      24.787 -10.425  18.804  1.00 25.00           C
ATOM     63  CA  ALA    63      26.504 -12.634  21.421  1.00 25.00           C
ATOM     64  CA  ALA    64      23.838 -11.688  24.003  1.00 25.00           C
ATOM     65  CA  GLU    65      21.072 -12.543  21.498  1.00 25.00           C
ATOM     66  CA  LEU    66      22.722 -15.927  20.792  1.00 25.00           C
ATOM     67  CA  GLY    67      21.810 -18.179  23.740  1.00 25.00           C
ATOM     68  CA  ASN    68      19.993 -18.886  27.044  1.00 25.00           C
ATOM     69  CA  ASN    69      23.205 -19.545  29.023  1.00 25.00           C
ATOM     70  CA  ALA    70      26.384 -18.667  30.926  1.00 25.00           C
ATOM     71  CA  LEU    71      28.143 -20.689  28.204  1.00 25.00           C
ATOM     72  CA  PRO    72      29.497 -24.276  27.738  1.00 25.00           C
ATOM     73  CA  PRO    73      32.160 -24.042  30.467  1.00 25.00           C
ATOM     74  CA  THR    74      35.380 -25.698  29.243  1.00 25.00           C
ATOM     75  CA  LYS    75      37.561 -22.773  30.320  1.00 25.00           C
ATOM     76  CA  PRO    76      39.402 -23.586  27.093  1.00 25.00           C
ATOM     77  CA  SER    77      41.211 -25.419  24.334  1.00 25.00           C
ATOM     78  CA  PHE    78      39.242 -24.285  21.339  1.00 25.00           C
ATOM     79  CA  PRO    79      38.641 -26.927  18.601  1.00 25.00           C
ATOM     80  CA  SER    80      37.398 -25.434  15.379  1.00 25.00           C
ATOM     81  CA  SER    81      41.005 -24.609  14.513  1.00 25.00           C
ATOM     82  CA  ILE    82      40.085 -23.559  10.958  1.00 25.00           C
ATOM     83  CA  GLN    83      42.900 -21.104  11.045  1.00 25.00           C
ATOM     84  CA  GLU    84      43.552 -17.608   9.767  1.00 25.00           C
ATOM     85  CA  LEU    85      40.633 -17.061   7.428  1.00 25.00           C
ATOM     86  CA  THR    86      39.039 -15.515  10.555  1.00 25.00           C
ATOM     87  CA  ASP    87      41.065 -12.285  10.923  1.00 25.00           C
ATOM     88  CA  ASP    88      39.274 -10.787   7.888  1.00 25.00           C
ATOM     89  CA  ASP    89      35.881 -11.748   9.384  1.00 25.00           C
ATOM     90  CA  MET    90      36.862 -10.122  12.711  1.00 25.00           C
ATOM     91  CA  ALA    91      37.925  -6.937  10.870  1.00 25.00           C
ATOM     92  CA  ILE    92      34.585  -6.878   8.993  1.00 25.00           C
ATOM     93  CA  LEU    93      32.694  -7.294  12.297  1.00 25.00           C
ATOM     94  CA  ASN    94      34.700  -4.419  13.837  1.00 25.00           C
ATOM     95  CA  ASP    95      33.907  -2.212  10.809  1.00 25.00           C
ATOM     96  CA  LEU    96      30.187  -3.064  11.133  1.00 25.00           C
ATOM     97  CA  HIS    97      30.284  -2.184  14.859  1.00 25.00           C
ATOM     98  CA  THR    98      31.981   1.153  14.053  1.00 25.00           C
ATOM     99  CA  LEU    99      29.306   1.905  11.417  1.00 25.00           C
ATOM    100  CA  LEU   100      26.549   1.096  13.949  1.00 25.00           C
ATOM    101  CA  LEU   101      28.192   3.415  16.516  1.00 25.00           C
ATOM    102  CA  GLN   102      28.390   6.208  13.904  1.00 25.00           C
ATOM    103  CA  THR   103      24.658   5.904  13.301  1.00 25.00           C
ATOM    104  CA  SER   104      22.156   6.294  16.140  1.00 25.00           C
ATOM    105  CA  ILE   105      18.609   6.560  14.952  1.00 25.00           C
ATOM    106  CA  ALA   106      17.926   7.191  11.313  1.00 25.00           C
ATOM    107  CA  GLU   107      15.222   7.979   8.760  1.00 25.00           C
ATOM    108  CA  GLY   108      17.861   7.761   6.033  1.00 25.00           C
ATOM    109  CA  GLU   109      18.687   4.237   7.239  1.00 25.00           C
ATOM    110  CA  MET   110      19.080   0.550   6.703  1.00 25.00           C
ATOM    111  CA  LYS   111      20.466  -1.245   3.661  1.00 25.00           C
ATOM    112  CA  CYS   112      23.870  -3.007   3.920  1.00 25.00           C
ATOM    113  CA  ARG   113      25.615  -2.372   0.550  1.00 25.00           C
ATOM    114  CA  ASN   114      29.078  -2.651  -0.994  1.00 25.00           C
ATOM    115  CA  CYS   115      30.177  -2.693   2.643  1.00 25.00           C
ATOM    116  CA  GLY   116      30.410   1.074   2.634  1.00 25.00           C
ATOM    117  CA  HIS   117      29.103   1.081   6.197  1.00 25.00           C
ATOM    118  CA  ILE   118      25.319   1.394   6.387  1.00 25.00           C
ATOM    119  CA  TYR   119      24.702   4.914   7.654  1.00 25.00           C
ATOM    120  CA  TYR   120      22.515   7.672   9.068  1.00 25.00           C
ATOM    121  CA  ILE   121      25.804   9.630   9.462  1.00 25.00           C
ATOM    122  CA  LYS   122      28.160  12.011   7.664  1.00 25.00           C
ATOM    123  CA  ASN   123      29.364  15.630   7.623  1.00 25.00           C
ATOM    124  CA  GLY   124      30.550  19.216   7.870  1.00 25.00           C
ATOM    125  CA  ILE   125      28.525  22.144   9.281  1.00 25.00           C
ATOM    126  CA  PRO   126      27.625  23.063  12.861  1.00 25.00           C
ATOM    127  CA  ASN   127      25.052  25.550  11.600  1.00 25.00           C
ATOM    128  CA  LEU   128      21.547  25.050  12.807  1.00 25.00           C
ATOM    129  CA  LEU   129      18.222  25.960  14.384  1.00 25.00           C
ATOM    130  CA  LEU   130      16.745  26.393  10.945  1.00 25.00           C
ATOM    131  CA  PRO   131      15.088  26.762   7.472  1.00 25.00           C
ATOM    132  CA  PRO   132      11.850  26.010   9.256  1.00 25.00           C
ATOM    133  CA  HIS   133       8.559  25.312  10.907  1.00 25.00           C
ATOM    134  CA  LEU   134       9.302  24.359  14.561  1.00 25.00           C
ATOM    135  CA  VAL   135       6.555  26.979  15.188  1.00 25.00           C
TER
END
