
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  135 (  135),  selected  135 , name T0319TS393_4
# Molecule2: number of CA atoms  135 ( 1055),  selected  135 , name T0319.pdb
# PARAMETERS: T0319TS393_4.T0319.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    31        79 - 109         4.91    18.48
  LONGEST_CONTINUOUS_SEGMENT:    31        80 - 110         4.85    18.38
  LCS_AVERAGE:     16.42

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    21        84 - 104         1.87    18.10
  LONGEST_CONTINUOUS_SEGMENT:    21        85 - 105         1.88    18.35
  LCS_AVERAGE:      8.09

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    16        85 - 100         0.90    18.81
  LONGEST_CONTINUOUS_SEGMENT:    16        86 - 101         0.66    19.13
  LCS_AVERAGE:      4.93

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  135
LCS_GDT     M       1     M       1      4    5   14     0    3    5    8    9   10   13   20   22   25   29   30   36   39   43   47   51   53   55   57 
LCS_GDT     K       2     K       2      4    5   14     3    3    4    5    9   10   12   14   17   21   27   29   36   39   43   47   51   53   55   57 
LCS_GDT     F       3     F       3      4    5   14     3    3    4    5    7    8   11   20   21   25   29   32   36   39   43   47   51   53   55   57 
LCS_GDT     L       4     L       4      4    5   14     3    3    4    7    7   10   12   14   17   25   27   28   34   35   43   47   51   53   55   57 
LCS_GDT     T       5     T       5      3    5   14     3    3    3    5    8   14   18   22   26   28   29   33   36   40   44   47   51   53   55   57 
LCS_GDT     T       6     T       6      3    5   15     3    3    4    5    7   13   20   23   26   28   29   33   38   40   44   47   51   53   55   57 
LCS_GDT     N       7     N       7      3    5   15     3   14   15   17   20   21   22   23   26   28   29   33   38   40   44   47   49   51   53   57 
LCS_GDT     F       8     F       8      3    5   15     3    3   15   17   20   21   22   23   26   28   29   33   38   40   44   47   49   51   53   57 
LCS_GDT     L       9     L       9      3    5   16     3    3    4    5    7   11   13   15   21   26   29   33   38   40   44   47   49   51   53   57 
LCS_GDT     K      10     K      10      3    7   16     3    3    4    6    7   10   11   13   17   21   26   30   34   40   44   47   49   51   53   57 
LCS_GDT     C      11     C      11      4    7   18     3    3    4    6    6    9   11   13   15   18   21   26   28   31   38   47   49   51   53   57 
LCS_GDT     S      12     S      12      4    7   18     3    4    5    7    7    9   11   13   15   18   19   22   26   37   39   43   49   51   53   57 
LCS_GDT     V      13     V      13      4    7   18     3    3    4    6    6    7    8   12   15   19   21   22   26   37   41   47   49   51   53   57 
LCS_GDT     K      14     K      14      4    7   18     3    3    4    6    6    7    8    9   15   17   21   22   26   29   34   44   45   47   53   57 
LCS_GDT     A      15     A      15      3    7   18     3    3    4    6    6    7    7    9   10   11   13   13   16   23   31   33   41   44   47   48 
LCS_GDT     C      16     C      16      4    7   18     3    4    5    7    7    7    8   13   18   19   22   23   26   29   44   47   49   51   53   57 
LCS_GDT     D      17     D      17      4    7   18     3    4    5    7    7    7    8    9   11   26   29   33   38   40   44   47   49   51   53   57 
LCS_GDT     T      18     T      18      5    7   18     3    4    5    7    7    7    8   13   18   19   21   21   24   26   30   34   38   40   46   54 
LCS_GDT     S      19     S      19      5    7   18     3    4    5    7    7    7    8    9   15   19   22   23   26   29   34   39   42   44   50   54 
LCS_GDT     N      20     N      20      5    8   18     3    4    5    7    7    9   12   19   22   24   29   31   36   38   41   44   45   47   53   57 
LCS_GDT     D      21     D      21      5    9   18     3    4    5    7   18   20   20   23   26   28   29   33   38   40   44   47   49   51   53   57 
LCS_GDT     N      22     N      22      5    9   18     3    4    5    6    9   10   12   12   13   17   29   33   38   40   44   47   49   51   53   57 
LCS_GDT     F      23     F      23      4    9   18     0    4    5    6    9   10   12   12   15   25   29   33   38   40   44   47   49   51   53   57 
LCS_GDT     P      24     P      24      4    9   18     3    4    5    6    9   10   12   18   26   28   29   33   38   40   44   47   49   51   53   57 
LCS_GDT     L      25     L      25      4    9   18     3    4    6    7    9   10   12   12   20   23   27   33   38   40   44   47   49   51   53   57 
LCS_GDT     Q      26     Q      26      4    9   18     3    4    6    7    9   10   12   12   15   21   22   23   25   31   36   43   48   51   53   57 
LCS_GDT     Y      27     Y      27      4    9   18     3    4    6    7    9   10   12   12   16   18   19   24   36   39   43   47   51   53   55   57 
LCS_GDT     D      28     D      28      4    9   18     3    3    5    7    9   11   12   12   15   18   21   27   32   39   43   47   51   53   55   57 
LCS_GDT     G      29     G      29      4   11   17     3    3    6    7   10   11   12   13   15   19   22   27   30   35   41   45   50   53   55   57 
LCS_GDT     S      30     S      30      4   12   17     3    4    6    9   11   11   13   13   15   18   19   21   24   27   31   36   42   45   51   55 
LCS_GDT     K      31     K      31      4   12   17     3    4    7   10   11   11   13   13   15   18   19   20   23   24   30   36   39   45   51   53 
LCS_GDT     C      32     C      32      4   12   17     3    4    7   10   11   11   13   13   15   18   19   20   23   28   32   38   42   45   51   55 
LCS_GDT     Q      33     Q      33      4   12   17     3    4    5   10   11   11   13   13   15   18   18   20   24   24   30   36   41   46   51   55 
LCS_GDT     L      34     L      34      5   12   17     3    5    7   10   11   11   13   13   15   18   19   21   26   30   35   38   42   51   53   57 
LCS_GDT     V      35     V      35      5   12   17     3    5    7   10   11   11   13   13   15   18   25   28   29   31   35   40   48   51   54   57 
LCS_GDT     Q      36     Q      36      5   12   17     3    5    7   10   11   11   13   16   18   20   23   25   31   35   43   47   50   53   55   57 
LCS_GDT     D      37     D      37      5   12   20     3    4    5   10   11   11   13   14   16   18   23   28   34   39   43   47   51   53   55   57 
LCS_GDT     E      38     E      38      5   12   20     3    5    7   10   11   11   13   14   16   20   23   29   36   39   43   47   51   53   55   57 
LCS_GDT     S      39     S      39      4   12   20     3    5    7   10   11   11   13   14   16   20   23   29   36   39   43   47   51   53   55   57 
LCS_GDT     I      40     I      40      4   12   20     3    4    6   10   11   11   13   14   16   20   23   29   36   39   43   47   51   53   55   57 
LCS_GDT     E      41     E      41      4   12   20     3    4    4    5    7   11   13   14   16   20   23   29   34   39   43   47   51   53   55   57 
LCS_GDT     F      42     F      42      4    5   21     3    4    4    5    7   11   12   14   16   20   23   29   36   39   43   47   51   53   55   57 
LCS_GDT     N      43     N      43      3   10   24     3    3    4    5    7    9   12   14   16   20   23   29   36   39   43   47   51   53   55   57 
LCS_GDT     P      44     P      44      9   12   24     9    9    9    9   10   11   14   16   18   21   22   24   26   28   36   38   44   50   53   57 
LCS_GDT     E      45     E      45      9   12   24     9    9    9    9   10   11   14   16   19   21   23   27   30   38   43   47   51   53   55   57 
LCS_GDT     F      46     F      46      9   12   24     9    9    9    9   10   11   14   16   19   21   23   26   31   38   43   47   51   53   55   57 
LCS_GDT     L      47     L      47      9   12   24     9    9    9    9   10   11   14   16   19   21   23   27   31   39   43   47   51   53   55   57 
LCS_GDT     L      48     L      48      9   12   24     9    9    9    9   10   11   14   16   19   21   23   28   36   39   43   47   51   53   55   57 
LCS_GDT     N      49     N      49      9   12   24     9    9    9    9   10   11   14   16   19   21   23   29   36   39   43   47   51   53   55   57 
LCS_GDT     I      50     I      50      9   12   24     9    9    9    9   10   11   14   16   19   21   23   29   36   39   43   47   51   53   55   57 
LCS_GDT     V      51     V      51      9   12   24     9    9    9    9   10   11   14   16   19   21   23   29   36   39   43   47   51   53   55   57 
LCS_GDT     D      52     D      52      9   12   24     9    9    9    9   10   11   14   16   19   21   23   29   36   39   43   47   51   53   55   57 
LCS_GDT     R      53     R      53      5   12   24     3    4    6    6    7   11   14   16   19   21   23   28   32   38   42   46   51   53   55   57 
LCS_GDT     V      54     V      54      5   12   24     3    4    6    9   10   11   13   16   19   21   23   28   32   38   42   46   51   53   55   57 
LCS_GDT     D      55     D      55      5   13   24     3    4    6    7   10   11   14   20   21   27   29   33   38   40   44   47   51   53   55   57 
LCS_GDT     W      56     W      56     12   13   24    11   11   12   12   12   12   17   22   26   28   29   33   38   40   44   47   51   53   55   57 
LCS_GDT     P      57     P      57     12   13   24    11   11   12   12   12   12   13   15   18   20   23   29   36   39   44   47   51   53   55   57 
LCS_GDT     A      58     A      58     12   13   24    11   11   12   12   12   12   13   15   18   20   23   29   36   39   43   47   51   53   55   57 
LCS_GDT     V      59     V      59     12   13   24    11   11   12   12   12   13   14   22   23   26   29   33   38   40   44   47   51   53   55   57 
LCS_GDT     L      60     L      60     12   13   24    11   11   12   12   12   13   13   16   22   24   28   29   36   39   44   47   51   53   55   57 
LCS_GDT     T      61     T      61     12   13   24    11   11   12   12   12   12   13   15   19   21   23   28   36   39   43   47   51   53   55   57 
LCS_GDT     V      62     V      62     12   13   24    11   11   12   12   12   12   13   16   19   21   23   27   32   39   43   47   51   53   55   57 
LCS_GDT     A      63     A      63     12   13   24    11   11   12   12   12   12   13   15   18   21   23   25   30   35   39   45   50   53   55   57 
LCS_GDT     A      64     A      64     12   13   24    11   11   12   12   12   12   13   15   18   21   23   24   28   33   39   43   49   53   54   57 
LCS_GDT     E      65     E      65     12   13   24    11   11   12   12   12   12   13   16   19   21   23   24   26   30   33   39   43   47   52   55 
LCS_GDT     L      66     L      66     12   13   24    11   11   12   12   12   12   13   15   18   21   23   24   26   30   32   36   38   43   49   55 
LCS_GDT     G      67     G      67     12   13   24     3    5   12   12   12   12   13   15   18   19   22   24   26   30   32   36   38   40   45   48 
LCS_GDT     N      68     N      68      5   13   24     3    4    5    6    7    9   13   15   16   19   22   24   26   28   32   36   38   38   41   42 
LCS_GDT     N      69     N      69      5    9   24     3    4    5    6    8    9   13   14   16   19   22   24   26   30   32   36   38   42   46   51 
LCS_GDT     A      70     A      70      4    9   24     3    4    5    6    8   10   13   15   16   19   22   24   26   30   32   36   38   38   41   47 
LCS_GDT     L      71     L      71      4    9   24     3    4    5    6    8    9   11   14   16   19   20   23   26   28   29   34   38   38   39   42 
LCS_GDT     P      72     P      72      4    9   24     3    3    4    5    8    9   11   14   16   19   20   23   26   28   29   31   33   36   39   43 
LCS_GDT     P      73     P      73      4    9   24     3    5    5    6    8    9   11   14   16   19   20   23   26   28   29   31   33   36   37   41 
LCS_GDT     T      74     T      74      4    9   24     2    5    5    6    8    9   11   14   16   19   20   23   26   28   29   31   33   38   48   51 
LCS_GDT     K      75     K      75      4    9   24     3    4    5    6    8    9   11   14   16   19   20   23   26   28   29   31   33   36   37   41 
LCS_GDT     P      76     P      76      4    9   24     3    4    4    5    8    9   11   14   16   19   20   23   26   28   29   31   33   36   37   39 
LCS_GDT     S      77     S      77      4    9   24     3    3    5    6    8    9   11   14   16   19   20   23   26   28   29   31   33   36   37   41 
LCS_GDT     F      78     F      78      3    8   29     3    3    5    6    7    9   11   14   16   19   20   23   26   28   29   31   33   46   49   53 
LCS_GDT     P      79     P      79      3    8   31     3    3    5    5    7    8   11   14   16   19   20   21   25   28   29   31   35   46   49   53 
LCS_GDT     S      80     S      80      3    8   31     3    3    5    5    7    8   11   14   16   19   20   25   29   32   35   45   49   51   53   57 
LCS_GDT     S      81     S      81      3    8   31     3    3    4    5    7    9   10   12   16   19   23   30   38   40   44   47   49   51   53   57 
LCS_GDT     I      82     I      82      3    8   31     3    3    5    5    7    9   11   14   16   21   26   33   38   40   44   47   49   51   53   57 
LCS_GDT     Q      83     Q      83      3    8   31     3    3    4    7   11   14   17   21   25   26   29   33   38   40   44   47   49   51   53   57 
LCS_GDT     E      84     E      84      3   21   31     3    5    5   10   15   20   22   23   26   28   29   33   38   40   44   47   49   51   53   57 
LCS_GDT     L      85     L      85     16   21   31     3    5   13   17   20   21   22   23   26   28   29   33   38   40   44   47   49   51   53   57 
LCS_GDT     T      86     T      86     16   21   31    14   15   16   17   20   21   22   23   26   28   29   33   38   40   44   47   49   51   53   57 
LCS_GDT     D      87     D      87     16   21   31    14   15   16   17   20   21   22   23   26   28   29   33   38   40   44   47   49   51   53   57 
LCS_GDT     D      88     D      88     16   21   31    14   15   16   17   20   21   22   23   26   28   29   33   38   40   44   47   49   51   53   57 
LCS_GDT     D      89     D      89     16   21   31    14   15   16   17   20   21   22   23   26   28   29   33   38   40   44   47   49   51   53   57 
LCS_GDT     M      90     M      90     16   21   31    14   15   16   17   20   21   22   23   26   28   29   33   38   40   44   47   49   51   53   57 
LCS_GDT     A      91     A      91     16   21   31    14   15   16   17   20   21   22   23   26   28   29   33   38   40   44   47   49   51   53   57 
LCS_GDT     I      92     I      92     16   21   31    14   15   16   17   20   21   22   23   26   28   29   33   38   40   44   47   49   51   53   57 
LCS_GDT     L      93     L      93     16   21   31    14   15   16   17   20   21   22   23   26   28   29   33   38   40   44   47   49   51   53   57 
LCS_GDT     N      94     N      94     16   21   31    14   15   16   17   20   21   22   23   26   28   29   33   38   40   44   47   49   51   53   57 
LCS_GDT     D      95     D      95     16   21   31    14   15   16   17   20   21   22   23   26   28   29   33   38   40   44   47   49   51   53   57 
LCS_GDT     L      96     L      96     16   21   31    14   15   16   17   20   21   22   23   26   28   29   33   38   40   44   47   49   51   53   57 
LCS_GDT     H      97     H      97     16   21   31    14   15   16   17   20   21   22   23   26   28   29   33   38   40   44   47   49   51   53   57 
LCS_GDT     T      98     T      98     16   21   31    14   15   16   17   20   21   22   23   26   28   29   33   38   40   44   47   49   51   53   57 
LCS_GDT     L      99     L      99     16   21   31    14   15   16   17   20   21   22   23   26   28   29   33   38   40   44   47   49   51   53   57 
LCS_GDT     L     100     L     100     16   21   31     5   15   16   17   20   21   22   23   26   28   29   33   38   40   44   47   49   51   53   57 
LCS_GDT     L     101     L     101     16   21   31     3    9   16   17   20   21   22   23   26   28   29   33   38   40   44   47   49   51   53   57 
LCS_GDT     Q     102     Q     102      7   21   31     3    7    8   12   20   21   22   23   26   28   29   32   36   39   43   47   49   51   53   57 
LCS_GDT     T     103     T     103      7   21   31     4    7   10   16   20   21   22   23   26   28   29   33   38   40   44   47   51   53   55   57 
LCS_GDT     S     104     S     104      7   21   31     3    6   11   16   20   20   22   23   26   28   29   33   38   40   44   47   51   53   55   57 
LCS_GDT     I     105     I     105      7   21   31     3    6    6    8   15   20   22   22   24   26   29   33   38   40   44   47   51   53   55   57 
LCS_GDT     A     106     A     106      5    9   31     3    5    5    8    9   12   17   21   23   25   29   33   36   39   43   47   51   53   55   57 
LCS_GDT     E     107     E     107      4    7   31     2    3    6    8   10   12   16   19   21   25   25   29   36   39   43   47   51   53   55   57 
LCS_GDT     G     108     G     108      4    6   31     3    4    6    7    9   10   12   16   18   21   23   29   36   39   43   47   51   53   55   57 
LCS_GDT     E     109     E     109      4    5   31     3    4    6    8    9   10   12   14   17   21   23   29   36   39   43   47   51   53   55   57 
LCS_GDT     M     110     M     110      4    6   31     3    4    6    8    9   10   12   14   17   21   23   29   36   39   43   47   51   53   55   57 
LCS_GDT     K     111     K     111      4    6   19     3    4    6    8    9   10   12   14   17   21   23   27   36   39   43   47   51   53   55   57 
LCS_GDT     C     112     C     112      3    6   19     3    3    3    5    8   10   12   14   17   21   23   29   36   39   43   47   51   53   55   57 
LCS_GDT     R     113     R     113      3    6   19     3    3    3    5    8   10   12   14   16   21   23   29   36   39   43   47   51   53   55   57 
LCS_GDT     N     114     N     114      4    6   19     3    4    4    5    6    8   10   12   16   19   22   29   36   39   43   47   51   53   55   57 
LCS_GDT     C     115     C     115      4    6   19     3    4    4    5    6    7   10   14   17   21   23   29   36   39   43   47   51   53   55   57 
LCS_GDT     G     116     G     116      4    6   19     3    4    4    5    8   10   13   15   17   19   23   25   31   34   41   45   51   53   55   57 
LCS_GDT     H     117     H     117      4    6   19     3    4    5    7    9   10   13   14   17   21   23   27   31   34   39   44   51   53   55   57 
LCS_GDT     I     118     I     118      4    6   19     3    4    5    8    9   10   13   14   17   21   23   28   36   39   43   47   51   53   55   57 
LCS_GDT     Y     119     Y     119      4    6   19     3    4    6    8    9   10   12   14   17   21   23   29   36   39   43   47   51   53   55   57 
LCS_GDT     Y     120     Y     120      4    6   19     3    4    5    8    9   10   12   14   17   21   23   29   36   39   43   47   51   53   55   57 
LCS_GDT     I     121     I     121      3    5   19     3    4    4    5    7   10   12   14   17   21   23   29   36   39   44   47   51   53   55   57 
LCS_GDT     K     122     K     122      3    5   19     3    4    4    5    7   10   10   12   16   21   23   28   32   37   42   46   51   53   55   57 
LCS_GDT     N     123     N     123      5    9   19     3    5    5    5    8   10   10   14   16   20   27   31   38   40   44   47   51   53   53   57 
LCS_GDT     G     124     G     124      5    9   14     3    5    5    6    8   10   10   13   15   19   20   23   25   28   34   37   40   47   50   57 
LCS_GDT     I     125     I     125      5    9   13     3    5    5    6    8   10   10   12   15   16   19   23   25   28   30   35   40   45   48   53 
LCS_GDT     P     126     P     126      5    9   13     3    5    5    6    8   10   10   12   15   16   19   23   25   30   32   38   40   42   44   48 
LCS_GDT     N     127     N     127      5    9   13     3    5    5    6    8   10   10   10   11   16   19   23   25   30   32   38   40   42   45   48 
LCS_GDT     L     128     L     128      5    9   13     3    5    5    6    8   10   10   10   11   16   19   23   25   30   32   38   40   42   45   48 
LCS_GDT     L     129     L     129      5    9   13     3    5    5    6    8   10   10   12   15   16   19   23   25   30   32   38   40   42   45   48 
LCS_GDT     L     130     L     130      5    9   13     3    5    5    5    8   10   10   12   15   16   19   23   25   28   32   38   40   42   45   48 
LCS_GDT     P     131     P     131      5    9   13     3    5    5    6    8   10   10   12   15   16   19   23   25   30   32   38   40   42   45   48 
LCS_GDT     P     132     P     132      3    6   13     3    3    3    5    6   10   10   10   15   16   19   23   25   30   32   38   41   44   51   57 
LCS_GDT     H     133     H     133      3    5   13     3    3    3    4    5    7    8    8   10   10   14   23   25   30   32   38   40   42   44   48 
LCS_GDT     L     134     L     134      3    5   13     3    3    3    5    5    7    8    8   10   10   10   11   12   14   21   23   24   29   37   42 
LCS_GDT     V     135     V     135      3    4   12     0    3    3    5    5    7    8    8   10   10   10   11   12   14   17   19   21   22   26   31 
LCS_AVERAGE  LCS_A:   9.81  (   4.93    8.09   16.42 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     14     15     16     17     20     21     22     23     26     28     29     33     38     40     44     47     51     53     55     57 
GDT PERCENT_CA  10.37  11.11  11.85  12.59  14.81  15.56  16.30  17.04  19.26  20.74  21.48  24.44  28.15  29.63  32.59  34.81  37.78  39.26  40.74  42.22
GDT RMS_LOCAL    0.17   0.32   0.66   0.73   1.43   1.57   1.70   1.93   2.61   2.97   3.09   4.04   4.65   4.83   5.32   5.75   6.01   6.15   6.32   6.53
GDT RMS_ALL_CA  19.30  19.26  19.13  19.39  19.09  18.95  18.96  19.14  19.15  19.05  19.10  18.94  18.80  18.71  18.49  17.93  18.77  18.62  18.48  18.28

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1          6.089
LGA    K       2      K       2          7.904
LGA    F       3      F       3          6.508
LGA    L       4      L       4          7.585
LGA    T       5      T       5          5.101
LGA    T       6      T       6          5.114
LGA    N       7      N       7          0.609
LGA    F       8      F       8          1.697
LGA    L       9      L       9          8.234
LGA    K      10      K      10         11.680
LGA    C      11      C      11         14.299
LGA    S      12      S      12         14.731
LGA    V      13      V      13         13.928
LGA    K      14      K      14         13.029
LGA    A      15      A      15         14.540
LGA    C      16      C      16         11.740
LGA    D      17      D      17          7.713
LGA    T      18      T      18         11.815
LGA    S      19      S      19         10.900
LGA    N      20      N      20          6.982
LGA    D      21      D      21          3.868
LGA    N      22      N      22          7.314
LGA    F      23      F      23          6.722
LGA    P      24      P      24          5.915
LGA    L      25      L      25          9.185
LGA    Q      26      Q      26         14.629
LGA    Y      27      Y      27         16.378
LGA    D      28      D      28         23.004
LGA    G      29      G      29         26.035
LGA    S      30      S      30         30.042
LGA    K      31      K      31         26.662
LGA    C      32      C      32         21.500
LGA    Q      33      Q      33         18.933
LGA    L      34      L      34         12.972
LGA    V      35      V      35         12.155
LGA    Q      36      Q      36         15.357
LGA    D      37      D      37         18.802
LGA    E      38      E      38         23.740
LGA    S      39      S      39         27.164
LGA    I      40      I      40         28.064
LGA    E      41      E      41         28.854
LGA    F      42      F      42         26.337
LGA    N      43      N      43         27.494
LGA    P      44      P      44         24.477
LGA    E      45      E      45         26.459
LGA    F      46      F      46         21.502
LGA    L      47      L      47         17.651
LGA    L      48      L      48         20.875
LGA    N      49      N      49         21.342
LGA    I      50      I      50         15.225
LGA    V      51      V      51         13.666
LGA    D      52      D      52         17.952
LGA    R      53      R      53         19.521
LGA    V      54      V      54         13.298
LGA    D      55      D      55          8.376
LGA    W      56      W      56          5.212
LGA    P      57      P      57         10.235
LGA    A      58      A      58         12.498
LGA    V      59      V      59          7.731
LGA    L      60      L      60         10.226
LGA    T      61      T      61         17.040
LGA    V      62      V      62         18.113
LGA    A      63      A      63         17.944
LGA    A      64      A      64         22.042
LGA    E      65      E      65         26.934
LGA    L      66      L      66         27.551
LGA    G      67      G      67         31.225
LGA    N      68      N      68         30.501
LGA    N      69      N      69         29.055
LGA    A      70      A      70         27.393
LGA    L      71      L      71         25.295
LGA    P      72      P      72         25.852
LGA    P      73      P      73         28.404
LGA    T      74      T      74         25.463
LGA    K      75      K      75         23.543
LGA    P      76      P      76         24.105
LGA    S      77      S      77         20.435
LGA    F      78      F      78         16.380
LGA    P      79      P      79         16.102
LGA    S      80      S      80         14.445
LGA    S      81      S      81         12.165
LGA    I      82      I      82         10.133
LGA    Q      83      Q      83          8.506
LGA    E      84      E      84          7.451
LGA    L      85      L      85          2.872
LGA    T      86      T      86          1.277
LGA    D      87      D      87          1.400
LGA    D      88      D      88          1.450
LGA    D      89      D      89          1.157
LGA    M      90      M      90          0.855
LGA    A      91      A      91          0.934
LGA    I      92      I      92          1.013
LGA    L      93      L      93          0.875
LGA    N      94      N      94          0.731
LGA    D      95      D      95          0.753
LGA    L      96      L      96          0.815
LGA    H      97      H      97          0.649
LGA    T      98      T      98          0.573
LGA    L      99      L      99          0.820
LGA    L     100      L     100          1.965
LGA    L     101      L     101          2.851
LGA    Q     102      Q     102          3.685
LGA    T     103      T     103          3.525
LGA    S     104      S     104          3.518
LGA    I     105      I     105          6.828
LGA    A     106      A     106          9.851
LGA    E     107      E     107         13.008
LGA    G     108      G     108         16.702
LGA    E     109      E     109         17.232
LGA    M     110      M     110         15.357
LGA    K     111      K     111         20.642
LGA    C     112      C     112         22.040
LGA    R     113      R     113         27.367
LGA    N     114      N     114         32.407
LGA    C     115      C     115         35.063
LGA    G     116      G     116         35.436
LGA    H     117      H     117         30.893
LGA    I     118      I     118         26.943
LGA    Y     119      Y     119         20.433
LGA    Y     120      Y     120         15.674
LGA    I     121      I     121         12.424
LGA    K     122      K     122         13.772
LGA    N     123      N     123         10.543
LGA    G     124      G     124         12.185
LGA    I     125      I     125         16.267
LGA    P     126      P     126         21.128
LGA    N     127      N     127         23.031
LGA    L     128      L     128         28.316
LGA    L     129      L     129         30.770
LGA    L     130      L     130         32.454
LGA    P     131      P     131         36.777
LGA    P     132      P     132         38.039
LGA    H     133      H     133         38.536
LGA    L     134      L     134         40.112
LGA    V     135      V     135         44.979

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  135  135    4.0     23    1.93    18.889    15.956     1.132

LGA_LOCAL      RMSD =  1.932  Number of atoms =   23  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 19.152  Number of atoms =  135 
Std_ALL_ATOMS  RMSD = 14.971  (standard rmsd on all 135 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.241158 * X  +   0.027912 * Y  +   0.970084 * Z  +  25.845964
  Y_new =  -0.921464 * X  +   0.307089 * Y  +  -0.237907 * Z  +  -3.755793
  Z_new =  -0.304542 * X  +  -0.951271 * Y  +  -0.048337 * Z  +  12.353601 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -1.621566    1.520027  [ DEG:   -92.9089     87.0911 ]
  Theta =   0.309458    2.832135  [ DEG:    17.7306    162.2694 ]
  Phi   =  -1.826767    1.314825  [ DEG:  -104.6661     75.3339 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0319TS393_4                                  
REMARK     2: T0319.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0319TS393_4.T0319.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  135  135   4.0   23   1.93  15.956    14.97
REMARK  ---------------------------------------------------------- 
MOLECULE T0319TS393_4
PFRMAT TS
TARGET T0319
MODEL 4
PARENT N/A
ATOM      1  CA  MET     1      17.527  11.307  14.146  1.00 25.00           C
ATOM      2  CA  LYS     2      19.248   9.334  11.415  1.00 25.00           C
ATOM      3  CA  PHE     3      21.336   7.431   8.866  1.00 25.00           C
ATOM      4  CA  LEU     4      19.118   4.536   9.723  1.00 25.00           C
ATOM      5  CA  THR     5      19.557   1.387  11.778  1.00 25.00           C
ATOM      6  CA  THR     6      19.651  -2.386  12.438  1.00 25.00           C
ATOM      7  CA  ASN     7      15.872  -2.888  12.168  1.00 25.00           C
ATOM      8  CA  PHE     8      14.987  -2.165  15.856  1.00 25.00           C
ATOM      9  CA  LEU     9      17.293  -5.144  16.435  1.00 25.00           C
ATOM     10  CA  LYS    10      15.316  -7.929  18.116  1.00 25.00           C
ATOM     11  CA  CYS    11      14.129  -8.836  14.640  1.00 25.00           C
ATOM     12  CA  SER    12      10.710 -10.061  15.818  1.00 25.00           C
ATOM     13  CA  VAL    13       7.696  -8.814  13.890  1.00 25.00           C
ATOM     14  CA  LYS    14       7.274  -8.232  10.136  1.00 25.00           C
ATOM     15  CA  ALA    15       9.722  -5.312   9.580  1.00 25.00           C
ATOM     16  CA  CYS    16      10.663  -3.561  12.865  1.00 25.00           C
ATOM     17  CA  ASP    17       7.594  -3.274  15.110  1.00 25.00           C
ATOM     18  CA  THR    18       7.305   0.425  14.109  1.00 25.00           C
ATOM     19  CA  SER    19       8.118   1.988  10.738  1.00 25.00           C
ATOM     20  CA  ASN    20       6.358  -1.050   9.256  1.00 25.00           C
ATOM     21  CA  ASP    21       8.271  -1.200   6.004  1.00 25.00           C
ATOM     22  CA  ASN    22      11.995  -1.394   6.514  1.00 25.00           C
ATOM     23  CA  PHE    23      14.618   0.782   8.174  1.00 25.00           C
ATOM     24  CA  PRO    24      17.015  -1.891   7.023  1.00 25.00           C
ATOM     25  CA  LEU    25      15.296  -5.150   8.120  1.00 25.00           C
ATOM     26  CA  GLN    26      16.371  -8.325   9.989  1.00 25.00           C
ATOM     27  CA  TYR    27      19.446  -7.487  12.065  1.00 25.00           C
ATOM     28  CA  ASP    28      20.487  -9.124  15.370  1.00 25.00           C
ATOM     29  CA  GLY    29      21.517 -11.018  18.511  1.00 25.00           C
ATOM     30  CA  SER    30      25.232 -10.404  18.795  1.00 25.00           C
ATOM     31  CA  LYS    31      26.495  -6.800  18.282  1.00 25.00           C
ATOM     32  CA  CYS    32      25.669  -6.899  14.577  1.00 25.00           C
ATOM     33  CA  GLN    33      23.690  -4.714  12.166  1.00 25.00           C
ATOM     34  CA  LEU    34      24.151  -1.590   9.956  1.00 25.00           C
ATOM     35  CA  VAL    35      23.077   1.537   8.061  1.00 25.00           C
ATOM     36  CA  GLN    36      20.848   1.423   5.001  1.00 25.00           C
ATOM     37  CA  ASP    37      20.178   4.610   3.064  1.00 25.00           C
ATOM     38  CA  GLU    38      19.203   6.339  -0.167  1.00 25.00           C
ATOM     39  CA  SER    39      21.106   9.362  -1.410  1.00 25.00           C
ATOM     40  CA  ILE    40      23.603   8.421  -4.134  1.00 25.00           C
ATOM     41  CA  GLU    41      23.726   4.673  -3.683  1.00 25.00           C
ATOM     42  CA  PHE    42      27.554   5.082  -3.769  1.00 25.00           C
ATOM     43  CA  ASN    43      27.623   7.761  -1.088  1.00 25.00           C
ATOM     44  CA  PRO    44      28.132   8.161   2.699  1.00 25.00           C
ATOM     45  CA  GLU    45      31.486   6.445   2.012  1.00 25.00           C
ATOM     46  CA  PHE    46      31.349   4.750   5.443  1.00 25.00           C
ATOM     47  CA  LEU    47      27.782   3.549   4.736  1.00 25.00           C
ATOM     48  CA  LEU    48      28.897   2.156   1.347  1.00 25.00           C
ATOM     49  CA  ASN    49      31.817   0.335   3.028  1.00 25.00           C
ATOM     50  CA  ILE    50      29.427  -1.145   5.630  1.00 25.00           C
ATOM     51  CA  VAL    51      27.078  -2.316   2.842  1.00 25.00           C
ATOM     52  CA  ASP    52      30.023  -3.934   1.005  1.00 25.00           C
ATOM     53  CA  ARG    53      27.968  -6.310  -1.211  1.00 25.00           C
ATOM     54  CA  VAL    54      25.051  -6.780   1.134  1.00 25.00           C
ATOM     55  CA  ASP    55      22.692  -7.942   3.920  1.00 25.00           C
ATOM     56  CA  TRP    56      23.938  -5.678   6.668  1.00 25.00           C
ATOM     57  CA  PRO    57      27.203  -7.618   6.174  1.00 25.00           C
ATOM     58  CA  ALA    58      27.555  -8.037   9.965  1.00 25.00           C
ATOM     59  CA  VAL    59      23.948  -9.308  10.184  1.00 25.00           C
ATOM     60  CA  LEU    60      24.632 -11.803   7.359  1.00 25.00           C
ATOM     61  CA  THR    61      27.782 -13.022   9.164  1.00 25.00           C
ATOM     62  CA  VAL    62      25.787 -13.460  12.403  1.00 25.00           C
ATOM     63  CA  ALA    63      23.110 -15.445  10.516  1.00 25.00           C
ATOM     64  CA  ALA    64      25.817 -17.674   8.974  1.00 25.00           C
ATOM     65  CA  GLU    65      27.334 -18.271  12.439  1.00 25.00           C
ATOM     66  CA  LEU    66      23.883 -19.191  13.819  1.00 25.00           C
ATOM     67  CA  GLY    67      24.224 -22.813  12.770  1.00 25.00           C
ATOM     68  CA  ASN    68      21.889 -25.635  11.683  1.00 25.00           C
ATOM     69  CA  ASN    69      23.240 -26.638   8.237  1.00 25.00           C
ATOM     70  CA  ALA    70      26.106 -27.829   5.992  1.00 25.00           C
ATOM     71  CA  LEU    71      28.279 -28.386   9.069  1.00 25.00           C
ATOM     72  CA  PRO    72      27.550 -31.470  11.202  1.00 25.00           C
ATOM     73  CA  PRO    73      30.582 -33.695  12.077  1.00 25.00           C
ATOM     74  CA  THR    74      33.412 -32.372  14.274  1.00 25.00           C
ATOM     75  CA  LYS    75      35.294 -31.808  10.995  1.00 25.00           C
ATOM     76  CA  PRO    76      38.304 -33.367  12.721  1.00 25.00           C
ATOM     77  CA  SER    77      40.973 -31.692  10.592  1.00 25.00           C
ATOM     78  CA  PHE    78      41.675 -28.697  12.776  1.00 25.00           C
ATOM     79  CA  PRO    79      44.478 -29.894  14.978  1.00 25.00           C
ATOM     80  CA  SER    80      43.935 -27.023  17.489  1.00 25.00           C
ATOM     81  CA  SER    81      44.134 -24.317  14.883  1.00 25.00           C
ATOM     82  CA  ILE    82      44.413 -20.750  16.163  1.00 25.00           C
ATOM     83  CA  GLN    83      45.533 -18.539  13.257  1.00 25.00           C
ATOM     84  CA  GLU    84      44.326 -15.142  14.241  1.00 25.00           C
ATOM     85  CA  LEU    85      40.557 -15.393  14.112  1.00 25.00           C
ATOM     86  CA  THR    86      38.923 -15.142  10.711  1.00 25.00           C
ATOM     87  CA  ASP    87      40.482 -11.734   9.924  1.00 25.00           C
ATOM     88  CA  ASP    88      37.676 -11.001   7.423  1.00 25.00           C
ATOM     89  CA  ASP    89      35.054 -11.960  10.045  1.00 25.00           C
ATOM     90  CA  MET    90      36.734  -9.656  12.602  1.00 25.00           C
ATOM     91  CA  ALA    91      36.735  -6.792  10.058  1.00 25.00           C
ATOM     92  CA  ILE    92      33.019  -7.386   9.352  1.00 25.00           C
ATOM     93  CA  LEU    93      32.271  -7.338  13.108  1.00 25.00           C
ATOM     94  CA  ASN    94      34.211  -4.056  13.475  1.00 25.00           C
ATOM     95  CA  ASP    95      32.247  -2.540  10.558  1.00 25.00           C
ATOM     96  CA  LEU    96      28.953  -3.644  12.170  1.00 25.00           C
ATOM     97  CA  HIS    97      30.024  -2.073  15.494  1.00 25.00           C
ATOM     98  CA  THR    98      30.909   1.190  13.695  1.00 25.00           C
ATOM     99  CA  LEU    99      27.494   1.191  11.961  1.00 25.00           C
ATOM    100  CA  LEU   100      25.758   0.632  15.330  1.00 25.00           C
ATOM    101  CA  LEU   101      27.739   3.531  16.860  1.00 25.00           C
ATOM    102  CA  GLN   102      26.750   5.786  13.927  1.00 25.00           C
ATOM    103  CA  THR   103      23.609   4.418  12.203  1.00 25.00           C
ATOM    104  CA  SER   104      21.538   4.681  15.369  1.00 25.00           C
ATOM    105  CA  ILE   105      17.873   3.843  15.951  1.00 25.00           C
ATOM    106  CA  ALA   106      16.234   4.933  19.141  1.00 25.00           C
ATOM    107  CA  GLU   107      16.015   5.557  22.839  1.00 25.00           C
ATOM    108  CA  GLY   108      17.327   2.020  23.305  1.00 25.00           C
ATOM    109  CA  GLU   109      18.221  -0.199  20.351  1.00 25.00           C
ATOM    110  CA  MET   110      19.971  -0.680  16.996  1.00 25.00           C
ATOM    111  CA  LYS   111      22.499  -3.447  17.016  1.00 25.00           C
ATOM    112  CA  CYS   112      21.131  -4.413  20.421  1.00 25.00           C
ATOM    113  CA  ARG   113      22.630  -6.286  23.422  1.00 25.00           C
ATOM    114  CA  ASN   114      25.363  -5.370  25.972  1.00 25.00           C
ATOM    115  CA  CYS   115      28.284  -6.302  23.724  1.00 25.00           C
ATOM    116  CA  GLY   116      30.682  -3.360  23.902  1.00 25.00           C
ATOM    117  CA  HIS   117      29.199  -1.909  20.749  1.00 25.00           C
ATOM    118  CA  ILE   118      25.576  -2.485  21.721  1.00 25.00           C
ATOM    119  CA  TYR   119      23.985   0.732  20.464  1.00 25.00           C
ATOM    120  CA  TYR   120      21.583   3.647  20.792  1.00 25.00           C
ATOM    121  CA  ILE   121      24.136   6.162  19.549  1.00 25.00           C
ATOM    122  CA  LYS   122      26.443   8.559  21.484  1.00 25.00           C
ATOM    123  CA  ASN   123      26.342  10.846  24.520  1.00 25.00           C
ATOM    124  CA  GLY   124      27.684  13.672  26.703  1.00 25.00           C
ATOM    125  CA  ILE   125      29.543  16.531  25.062  1.00 25.00           C
ATOM    126  CA  PRO   126      28.496  19.973  26.377  1.00 25.00           C
ATOM    127  CA  ASN   127      28.302  21.676  22.981  1.00 25.00           C
ATOM    128  CA  LEU   128      31.316  21.995  20.698  1.00 25.00           C
ATOM    129  CA  LEU   129      34.084  20.262  18.873  1.00 25.00           C
ATOM    130  CA  LEU   130      37.425  21.621  20.038  1.00 25.00           C
ATOM    131  CA  PRO   131      40.221  20.525  17.764  1.00 25.00           C
ATOM    132  CA  PRO   132      39.762  21.392  14.024  1.00 25.00           C
ATOM    133  CA  HIS   133      37.270  23.822  12.570  1.00 25.00           C
ATOM    134  CA  LEU   134      36.414  26.756  10.401  1.00 25.00           C
ATOM    135  CA  VAL   135      34.868  29.187   7.871  1.00 25.00           C
TER
END
