
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  135 (  135),  selected  135 , name T0319TS599_2
# Molecule2: number of CA atoms  135 ( 1055),  selected  135 , name T0319.pdb
# PARAMETERS: T0319TS599_2.T0319.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    44        35 - 78          4.88    17.31
  LONGEST_CONTINUOUS_SEGMENT:    44        37 - 80          4.99    17.42
  LCS_AVERAGE:     24.17

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    33        42 - 74          2.00    18.56
  LCS_AVERAGE:     13.68

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    22        42 - 63          0.96    18.17
  LCS_AVERAGE:      8.86

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  135
LCS_GDT     M       1     M       1      9   10   13     0    6    9    9    9   10   10   10   11   11   13   18   20   24   27   30   33   36   39   40 
LCS_GDT     K       2     K       2      9   10   13     3    5    9    9    9   10   10   10   11   11   11   15   30   32   33   33   36   38   39   46 
LCS_GDT     F       3     F       3      9   10   13     3    5    9    9    9   10   15   23   24   27   30   36   40   41   43   48   50   52   57   57 
LCS_GDT     L       4     L       4      9   10   13     3    6    9    9    9   10   17   23   26   32   37   43   45   47   48   50   51   53   57   58 
LCS_GDT     T       5     T       5      9   10   13     5    6    9    9    9   10   10   10   14   16   22   25   30   32   34   43   44   44   52   54 
LCS_GDT     T       6     T       6      9   10   15     5    6    9    9    9   10   10   10   15   16   20   22   30   32   34   36   38   40   42   46 
LCS_GDT     N       7     N       7      9   10   15     5    6    9    9    9   10   10   10   11   12   18   22   28   31   34   36   38   40   42   59 
LCS_GDT     F       8     F       8      9   10   15     5    6    9    9    9   10   10   10   15   16   20   25   30   32   34   36   38   44   49   59 
LCS_GDT     L       9     L       9      9   10   15     5    6    9    9    9   10   10   12   15   16   20   21   24   26   33   34   36   40   42   46 
LCS_GDT     K      10     K      10      5   10   15     3    4    5    6    8   10   10   10   11   14   15   18   20   22   24   28   31   36   41   44 
LCS_GDT     C      11     C      11      5    6   15     3    4    5    5    6    8   10   10   11   14   15   17   20   22   24   28   31   34   39   44 
LCS_GDT     S      12     S      12      5    6   15     3    4    5    5    6    8   10   12   15   16   20   21   24   26   29   34   36   40   41   45 
LCS_GDT     V      13     V      13      5    6   15     3    4    5    5    6    8   10   12   12   15   20   21   24   26   29   34   36   37   41   45 
LCS_GDT     K      14     K      14      4    6   15     3    3    4    5    6    8   10   12   15   16   20   21   24   26   29   34   36   40   49   49 
LCS_GDT     A      15     A      15      4    6   15     3    3    4    5    6    8   10   12   12   14   18   20   24   25   28   32   38   44   49   52 
LCS_GDT     C      16     C      16      4    6   15     3    3    4    5    6    8   10   12   13   16   19   21   25   26   31   34   38   44   49   59 
LCS_GDT     D      17     D      17      3    5   15     3    3    3    4    5    6   10   12   13   16   19   22   25   28   35   41   44   53   53   59 
LCS_GDT     T      18     T      18      5    5   17     4    5    5    5    6    8   10   12   12   15   19   20   22   26   30   37   43   47   53   59 
LCS_GDT     S      19     S      19      5    5   19     4    5    5    5    5    6    9   12   13   17   19   23   36   40   45   50   55   59   63   68 
LCS_GDT     N      20     N      20      5    5   19     4    5    5    5    7   10   11   15   19   22   27   33   40   45   48   53   58   62   65   68 
LCS_GDT     D      21     D      21      5    5   19     4    5    5    7   10   12   14   16   21   25   31   35   40   45   49   53   58   62   65   68 
LCS_GDT     N      22     N      22      5    5   19     4    5    5    5    7   10   13   15   19   21   26   32   40   45   49   53   58   62   65   68 
LCS_GDT     F      23     F      23      6   11   19     3    4    6    9   12   14   16   16   19   23   31   35   40   45   49   53   58   62   65   68 
LCS_GDT     P      24     P      24      6   11   19     3    5    6    9   12   14   16   16   19   23   31   35   40   45   49   53   58   62   65   68 
LCS_GDT     L      25     L      25      6   11   19     4    5    6    9   11   14   15   16   19   21   25   31   40   45   48   53   58   62   65   68 
LCS_GDT     Q      26     Q      26      6   11   19     4    5    6    9   11   11   15   15   19   21   25   31   38   42   47   53   58   62   65   68 
LCS_GDT     Y      27     Y      27      6   11   19     4    5    6    9   12   14   15   15   19   21   25   33   40   45   48   53   58   62   65   68 
LCS_GDT     D      28     D      28      6   11   19     5    5    6    9   12   14   15   15   19   21   25   28   32   33   45   51   57   62   65   68 
LCS_GDT     G      29     G      29      6   11   19     5    5    6    9   11   11   11   12   15   21   25   33   40   45   48   53   58   62   65   68 
LCS_GDT     S      30     S      30      6   11   19     5    5    6    8   12   14   15   15   19   21   25   28   32   41   47   53   58   62   65   68 
LCS_GDT     K      31     K      31      6   11   19     5    5    6    8   11   11   11   13   15   18   21   28   33   37   38   45   51   58   65   68 
LCS_GDT     C      32     C      32      6   11   19     5    5    6    9   11   11   12   15   18   22   26   30   34   37   38   52   58   62   65   68 
LCS_GDT     Q      33     Q      33      6   11   22     3    3    4    9   11   11   11   12   15   19   25   30   34   37   38   44   47   53   57   61 
LCS_GDT     L      34     L      34      3    3   42     3    3    3    4    6    9   11   12   13   14   20   24   29   37   37   41   45   46   48   54 
LCS_GDT     V      35     V      35      3    3   44     0    3    3    3    5    8   10   13   16   23   28   30   35   39   43   46   49   53   56   58 
LCS_GDT     Q      36     Q      36      4   10   44     3    4    6    8    9   10   15   16   18   19   26   29   35   37   41   44   49   53   55   58 
LCS_GDT     D      37     D      37      4   10   44     3    4    6    8    9   13   15   17   21   26   28   32   36   40   44   46   49   53   55   58 
LCS_GDT     E      38     E      38      4   23   44     3    4    6    8   11   15   23   27   32   36   41   43   45   47   48   50   51   53   56   58 
LCS_GDT     S      39     S      39      4   28   44     3    4   10   16   18   23   30   31   38   41   42   43   45   47   48   50   51   53   57   58 
LCS_GDT     I      40     I      40     18   31   44     3    8   12   17   20   25   30   37   39   41   42   43   45   47   48   50   51   53   57   57 
LCS_GDT     E      41     E      41     20   31   44     4   10   16   20   23   28   34   39   39   41   42   43   45   47   48   50   51   53   57   58 
LCS_GDT     F      42     F      42     22   33   44     5   16   21   23   27   33   37   39   39   41   42   43   45   47   48   50   51   53   57   58 
LCS_GDT     N      43     N      43     22   33   44     7   16   21   23   27   33   37   39   39   41   42   43   45   47   48   50   51   53   57   58 
LCS_GDT     P      44     P      44     22   33   44    10   16   21   23   27   33   37   39   39   41   42   43   45   47   48   50   51   53   57   58 
LCS_GDT     E      45     E      45     22   33   44    10   16   21   23   27   33   37   39   39   41   42   43   45   47   48   50   51   53   57   58 
LCS_GDT     F      46     F      46     22   33   44    10   16   21   23   27   33   37   39   39   41   42   43   45   47   48   50   51   53   57   58 
LCS_GDT     L      47     L      47     22   33   44    10   16   21   23   27   33   37   39   39   41   42   43   45   47   48   50   51   53   57   58 
LCS_GDT     L      48     L      48     22   33   44    10   16   21   23   27   33   37   39   39   41   42   43   45   47   48   50   51   53   57   58 
LCS_GDT     N      49     N      49     22   33   44    10   16   21   23   27   33   37   39   39   41   42   43   45   47   48   50   51   53   57   58 
LCS_GDT     I      50     I      50     22   33   44    10   16   21   23   27   33   37   39   39   41   42   43   45   47   48   50   51   53   57   58 
LCS_GDT     V      51     V      51     22   33   44    10   16   21   23   27   33   37   39   39   41   42   43   45   47   48   50   51   53   57   59 
LCS_GDT     D      52     D      52     22   33   44    10   16   21   23   27   33   37   39   39   41   42   43   45   47   48   50   51   53   57   58 
LCS_GDT     R      53     R      53     22   33   44    10   16   21   23   27   33   37   39   39   41   42   43   45   47   48   50   51   53   57   59 
LCS_GDT     V      54     V      54     22   33   44     3   15   21   23   27   33   37   39   39   41   42   43   45   47   48   52   58   62   65   68 
LCS_GDT     D      55     D      55     22   33   44    10   16   21   23   27   33   37   39   39   41   42   43   45   47   49   53   58   62   65   68 
LCS_GDT     W      56     W      56     22   33   44    12   16   21   23   27   33   37   39   39   41   42   43   45   47   49   53   58   62   65   68 
LCS_GDT     P      57     P      57     22   33   44    12   16   21   23   27   33   37   39   39   41   42   43   45   47   49   53   58   62   65   68 
LCS_GDT     A      58     A      58     22   33   44    12   16   21   23   27   33   37   39   39   41   42   43   45   47   49   53   58   62   65   68 
LCS_GDT     V      59     V      59     22   33   44    12   16   21   23   27   33   37   39   39   41   42   43   45   47   49   53   58   62   65   68 
LCS_GDT     L      60     L      60     22   33   44    12   16   21   23   27   33   37   39   39   41   42   43   45   47   48   50   53   60   64   66 
LCS_GDT     T      61     T      61     22   33   44    12   16   21   23   27   33   37   39   39   41   42   43   45   47   48   50   51   53   57   63 
LCS_GDT     V      62     V      62     22   33   44    12   16   21   23   27   33   37   39   39   41   42   43   45   47   48   50   51   53   62   63 
LCS_GDT     A      63     A      63     22   33   44    12   15   21   23   27   33   37   39   39   41   42   43   45   47   48   50   51   53   57   59 
LCS_GDT     A      64     A      64     21   33   44    12   15   21   23   27   33   37   39   39   41   42   43   45   47   48   50   51   53   57   58 
LCS_GDT     E      65     E      65     21   33   44    12   15   21   23   27   33   37   39   39   41   42   43   45   47   48   50   51   53   57   58 
LCS_GDT     L      66     L      66     21   33   44    12   15   21   23   27   33   37   39   39   41   42   43   45   47   48   50   51   53   57   58 
LCS_GDT     G      67     G      67     20   33   44    12   15   19   23   27   32   37   39   39   41   42   43   45   47   48   50   51   53   57   58 
LCS_GDT     N      68     N      68     20   33   44     8   15   20   23   27   33   37   39   39   41   42   43   45   47   48   50   51   53   57   58 
LCS_GDT     N      69     N      69     17   33   44     4    7   14   21   27   33   37   39   39   41   42   43   45   47   48   50   51   53   57   58 
LCS_GDT     A      70     A      70      9   33   44     5    7   14   21   27   33   37   39   39   41   42   43   45   47   48   50   51   53   57   58 
LCS_GDT     L      71     L      71      9   33   44     5    7   14   21   27   33   37   39   39   41   42   43   45   47   48   50   51   53   57   59 
LCS_GDT     P      72     P      72      9   33   44     5    7   14   21   27   33   37   39   39   41   42   43   45   47   48   50   51   54   62   65 
LCS_GDT     P      73     P      73      9   33   44     5    7   14   21   27   33   37   39   39   41   42   43   45   47   49   50   58   62   65   68 
LCS_GDT     T      74     T      74      8   33   44     5    6   14   21   27   33   37   39   39   41   42   43   45   47   49   53   58   62   65   68 
LCS_GDT     K      75     K      75      5   32   44     3    4    9   16   26   32   37   39   39   41   42   43   45   47   49   53   58   62   65   68 
LCS_GDT     P      76     P      76      5    7   44     3    4    5    9   13   16   23   30   34   38   41   43   45   47   49   53   58   62   65   68 
LCS_GDT     S      77     S      77      5   10   44     3    4    7    9   12   14   15   17   22   25   31   35   40   45   49   53   58   62   65   68 
LCS_GDT     F      78     F      78      5   10   44     3    4    7    9   10   14   15   17   22   25   31   35   40   45   49   53   58   62   65   68 
LCS_GDT     P      79     P      79      3   10   44     3    4    6    9   10   11   14   17   22   25   31   35   40   45   49   53   58   62   65   68 
LCS_GDT     S      80     S      80      6   10   44     3    5    7    8    9   11   13   17   22   25   28   31   34   37   43   48   49   53   60   68 
LCS_GDT     S      81     S      81      6   10   36     5    5    7    8    9   11   14   17   22   25   28   30   35   37   38   41   45   48   61   68 
LCS_GDT     I      82     I      82      6   10   36     5    5    7    8    9   11   14   17   20   22   26   31   37   42   48   52   58   62   65   68 
LCS_GDT     Q      83     Q      83      6   10   36     5    5    7    8    9   13   14   18   20   25   30   34   40   45   49   53   58   62   65   68 
LCS_GDT     E      84     E      84      6   10   36     5    5    7    8    9   13   15   18   20   24   30   34   40   45   49   52   58   62   65   68 
LCS_GDT     L      85     L      85      6   20   36     5    5    5   10   14   15   17   21   21   25   31   35   40   45   49   53   58   62   65   68 
LCS_GDT     T      86     T      86     16   20   36     4   15   16   16   19   20   20   21   23   25   31   35   38   45   49   53   58   62   65   68 
LCS_GDT     D      87     D      87     16   20   36    13   15   16   16   19   20   20   21   23   25   31   35   40   45   49   53   58   62   65   68 
LCS_GDT     D      88     D      88     16   20   36    13   15   16   16   19   20   20   21   23   25   31   35   40   45   49   53   58   62   65   68 
LCS_GDT     D      89     D      89     16   20   36    13   15   16   16   19   20   20   21   23   25   31   35   40   45   49   53   58   62   65   68 
LCS_GDT     M      90     M      90     16   20   36    13   15   16   16   19   20   20   21   23   25   31   35   40   45   49   53   58   62   65   68 
LCS_GDT     A      91     A      91     16   20   36    13   15   16   16   19   20   20   21   23   25   31   35   40   45   49   53   58   62   65   68 
LCS_GDT     I      92     I      92     16   20   36    13   15   16   16   19   20   20   21   23   25   31   35   40   45   49   53   58   62   65   68 
LCS_GDT     L      93     L      93     16   20   36    13   15   16   16   19   20   20   21   23   25   31   35   40   45   49   53   58   62   65   68 
LCS_GDT     N      94     N      94     16   20   36    13   15   16   16   19   20   20   21   23   25   31   35   40   45   49   53   58   62   65   68 
LCS_GDT     D      95     D      95     16   20   36    13   15   16   16   19   20   20   21   23   25   31   35   40   45   49   53   58   62   65   68 
LCS_GDT     L      96     L      96     16   20   36    13   15   16   16   19   20   20   21   23   25   31   35   40   45   49   53   58   62   65   68 
LCS_GDT     H      97     H      97     16   20   36    13   15   16   16   19   20   20   21   23   25   31   35   40   45   49   53   58   62   65   68 
LCS_GDT     T      98     T      98     16   20   36    13   15   16   16   19   20   20   21   23   25   31   35   40   45   49   53   58   62   65   68 
LCS_GDT     L      99     L      99     16   20   36    13   15   16   16   19   20   20   21   23   25   31   35   40   45   49   53   58   62   65   68 
LCS_GDT     L     100     L     100     16   20   36     9   15   16   16   19   20   20   21   23   25   31   35   40   45   49   53   58   62   65   68 
LCS_GDT     L     101     L     101     16   20   36     4   14   16   16   19   20   20   21   23   25   31   35   40   45   49   53   58   62   65   68 
LCS_GDT     Q     102     Q     102      7   20   36     3    5    8   15   19   20   20   21   23   25   31   35   40   45   49   53   57   62   65   68 
LCS_GDT     T     103     T     103      7   20   36     3    5    7   14   19   20   20   21   23   25   31   35   38   45   49   52   56   61   65   66 
LCS_GDT     S     104     S     104      7   20   36     3    5    7   14   19   20   20   21   23   25   31   35   40   45   49   53   58   62   65   68 
LCS_GDT     I     105     I     105      7   20   36     3    5    9   14   18   20   20   21   23   25   31   35   40   45   49   53   57   62   65   68 
LCS_GDT     A     106     A     106      6   14   36     3    5    7   10   13   17   19   21   23   25   31   34   38   44   49   51   56   60   65   68 
LCS_GDT     E     107     E     107      6   18   36     1    5    7   10   13   17   19   21   23   25   30   34   38   44   49   51   56   60   63   66 
LCS_GDT     G     108     G     108     17   18   36     3   10   16   17   17   17   18   20   23   25   31   34   38   44   49   51   56   62   65   68 
LCS_GDT     E     109     E     109     17   18   36     5   11   16   17   17   17   18   20   20   24   31   35   40   45   49   53   58   62   65   68 
LCS_GDT     M     110     M     110     17   18   34     4   11   16   17   17   17   18   20   20   20   26   31   38   45   48   53   58   62   65   68 
LCS_GDT     K     111     K     111     17   18   29     4   11   16   17   17   17   18   20   20   20   22   23   24   26   32   41   45   51   58   60 
LCS_GDT     C     112     C     112     17   18   29     6   11   16   17   17   17   18   20   20   20   22   23   24   24   26   31   36   39   43   48 
LCS_GDT     R     113     R     113     17   18   29     6   11   16   17   17   17   18   20   20   20   22   23   24   24   26   27   29   30   33   37 
LCS_GDT     N     114     N     114     17   18   29     6   11   16   17   17   17   18   20   20   20   22   23   24   24   26   27   29   30   32   36 
LCS_GDT     C     115     C     115     17   18   29     6   11   16   17   17   17   18   20   20   20   22   23   24   24   26   27   29   30   33   36 
LCS_GDT     G     116     G     116     17   18   29     6   11   16   17   17   17   18   20   20   20   22   23   24   24   26   27   29   31   35   38 
LCS_GDT     H     117     H     117     17   18   29     6   11   16   17   17   17   18   20   20   20   22   23   24   24   26   27   29   34   35   38 
LCS_GDT     I     118     I     118     17   18   29     6   11   16   17   17   17   18   20   20   20   22   23   24   31   32   37   40   43   45   52 
LCS_GDT     Y     119     Y     119     17   18   29     6   11   16   17   17   17   18   20   20   20   22   25   32   33   36   39   46   53   62   68 
LCS_GDT     Y     120     Y     120     17   18   29     4   11   16   17   17   17   18   20   20   20   22   30   34   37   42   45   58   62   65   68 
LCS_GDT     I     121     I     121     17   18   29     4    8   16   17   17   17   18   20   22   29   41   43   45   47   48   50   53   58   63   68 
LCS_GDT     K     122     K     122     17   18   29     3   11   16   17   17   17   18   20   22   25   42   43   45   47   48   50   51   53   57   59 
LCS_GDT     N     123     N     123     17   18   29     3   10   16   17   17   17   18   20   20   35   38   42   45   45   47   50   51   53   57   57 
LCS_GDT     G     124     G     124     17   18   29     3    9   16   17   23   25   27   30   33   37   40   42   45   45   47   50   51   53   57   59 
LCS_GDT     I     125     I     125      4   18   29     3    4    6   12   27   32   37   38   39   40   41   43   45   47   48   50   51   55   62   63 
LCS_GDT     P     126     P     126      4    9   29     3    4    4    5   12   14   36   39   39   41   42   43   45   47   49   53   58   62   65   68 
LCS_GDT     N     127     N     127      4    9   29     3    4    6    9   12   24   34   39   39   41   42   43   45   47   49   53   58   62   65   68 
LCS_GDT     L     128     L     128      6    9   29     5    6    6   20   25   33   37   39   39   41   42   43   45   47   49   53   58   62   65   68 
LCS_GDT     L     129     L     129      6    9   29     5    6    6    9   25   33   37   39   39   41   42   43   45   47   49   53   58   62   65   68 
LCS_GDT     L     130     L     130      6    9   29     5    6    6    9   12   15   15   18   22   37   40   42   45   45   49   53   58   62   65   68 
LCS_GDT     P     131     P     131      6    9   29     5    6    6    8   11   15   15   18   19   22   26   30   35   44   47   53   58   62   65   68 
LCS_GDT     P     132     P     132      6    8   29     5    6    6    7    9   11   13   17   19   22   27   37   39   44   44   49   58   62   65   68 
LCS_GDT     H     133     H     133      6    8   29     4    6    6    8    9   10   12   17   19   22   26   30   35   42   47   53   58   62   65   68 
LCS_GDT     L     134     L     134      4    8   28     0    3    4    6    8   10   12   20   20   22   26   33   38   44   49   53   58   62   65   68 
LCS_GDT     V     135     V     135      3    5   16     0    3    4    5    5    7   10   10   17   18   18   24   31   37   47   53   58   62   65   68 
LCS_AVERAGE  LCS_A:  15.57  (   8.86   13.68   24.17 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     13     16     21     23     27     33     37     39     39     41     42     43     45     47     49     53     58     62     65     68 
GDT PERCENT_CA   9.63  11.85  15.56  17.04  20.00  24.44  27.41  28.89  28.89  30.37  31.11  31.85  33.33  34.81  36.30  39.26  42.96  45.93  48.15  50.37
GDT RMS_LOCAL    0.24   0.61   0.84   1.09   1.37   1.97   2.18   2.35   2.31   2.68   2.82   2.90   3.22   3.47   5.59   5.99   6.40   6.55   6.69   7.03
GDT RMS_ALL_CA  20.08  18.24  18.11  18.56  18.36  18.52  18.54  18.24  18.40  18.03  17.99  18.05  18.38  17.90  17.39  17.17  16.74  16.81  16.78  16.66

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         19.165
LGA    K       2      K       2         13.479
LGA    F       3      F       3          8.986
LGA    L       4      L       4          7.257
LGA    T       5      T       5         11.592
LGA    T       6      T       6         15.375
LGA    N       7      N       7         15.138
LGA    F       8      F       8         15.749
LGA    L       9      L       9         20.739
LGA    K      10      K      10         26.923
LGA    C      11      C      11         30.609
LGA    S      12      S      12         32.511
LGA    V      13      V      13         37.305
LGA    K      14      K      14         36.391
LGA    A      15      A      15         37.121
LGA    C      16      C      16         30.617
LGA    D      17      D      17         27.689
LGA    T      18      T      18         27.064
LGA    S      19      S      19         24.537
LGA    N      20      N      20         23.259
LGA    D      21      D      21         17.586
LGA    N      22      N      22         13.470
LGA    F      23      F      23         12.057
LGA    P      24      P      24         10.814
LGA    L      25      L      25         15.102
LGA    Q      26      Q      26         19.676
LGA    Y      27      Y      27         21.361
LGA    D      28      D      28         27.552
LGA    G      29      G      29         29.919
LGA    S      30      S      30         33.787
LGA    K      31      K      31         28.536
LGA    C      32      C      32         23.656
LGA    Q      33      Q      33         25.118
LGA    L      34      L      34         21.241
LGA    V      35      V      35         14.560
LGA    Q      36      Q      36         14.075
LGA    D      37      D      37         12.097
LGA    E      38      E      38          7.739
LGA    S      39      S      39          6.465
LGA    I      40      I      40          5.349
LGA    E      41      E      41          3.908
LGA    F      42      F      42          1.963
LGA    N      43      N      43          2.106
LGA    P      44      P      44          2.542
LGA    E      45      E      45          2.697
LGA    F      46      F      46          1.613
LGA    L      47      L      47          1.032
LGA    L      48      L      48          2.167
LGA    N      49      N      49          2.314
LGA    I      50      I      50          1.369
LGA    V      51      V      51          1.377
LGA    D      52      D      52          2.317
LGA    R      53      R      53          2.022
LGA    V      54      V      54          1.166
LGA    D      55      D      55          1.969
LGA    W      56      W      56          1.253
LGA    P      57      P      57          1.703
LGA    A      58      A      58          1.275
LGA    V      59      V      59          0.921
LGA    L      60      L      60          1.010
LGA    T      61      T      61          0.801
LGA    V      62      V      62          0.803
LGA    A      63      A      63          2.206
LGA    A      64      A      64          2.658
LGA    E      65      E      65          2.101
LGA    L      66      L      66          2.971
LGA    G      67      G      67          3.691
LGA    N      68      N      68          2.423
LGA    N      69      N      69          2.480
LGA    A      70      A      70          2.587
LGA    L      71      L      71          3.007
LGA    P      72      P      72          3.352
LGA    P      73      P      73          3.208
LGA    T      74      T      74          3.625
LGA    K      75      K      75          2.880
LGA    P      76      P      76          6.923
LGA    S      77      S      77         11.643
LGA    F      78      F      78         15.055
LGA    P      79      P      79         17.645
LGA    S      80      S      80         15.819
LGA    S      81      S      81         20.973
LGA    I      82      I      82         25.799
LGA    Q      83      Q      83         26.747
LGA    E      84      E      84         20.730
LGA    L      85      L      85         21.252
LGA    T      86      T      86         26.565
LGA    D      87      D      87         28.835
LGA    D      88      D      88         24.102
LGA    D      89      D      89         21.397
LGA    M      90      M      90         26.550
LGA    A      91      A      91         27.208
LGA    I      92      I      92         21.507
LGA    L      93      L      93         22.271
LGA    N      94      N      94         27.532
LGA    D      95      D      95         25.356
LGA    L      96      L      96         20.129
LGA    H      97      H      97         24.113
LGA    T      98      T      98         27.244
LGA    L      99      L      99         22.592
LGA    L     100      L     100         19.550
LGA    L     101      L     101         23.702
LGA    Q     102      Q     102         25.993
LGA    T     103      T     103         23.243
LGA    S     104      S     104         21.012
LGA    I     105      I     105         18.261
LGA    A     106      A     106         16.958
LGA    E     107      E     107         14.387
LGA    G     108      G     108         12.705
LGA    E     109      E     109         16.028
LGA    M     110      M     110         17.101
LGA    K     111      K     111         22.063
LGA    C     112      C     112         22.854
LGA    R     113      R     113         28.605
LGA    N     114      N     114         29.803
LGA    C     115      C     115         30.999
LGA    G     116      G     116         31.368
LGA    H     117      H     117         26.713
LGA    I     118      I     118         23.584
LGA    Y     119      Y     119         16.754
LGA    Y     120      Y     120         13.403
LGA    I     121      I     121          7.402
LGA    K     122      K     122          6.106
LGA    N     123      N     123          7.462
LGA    G     124      G     124          8.113
LGA    I     125      I     125          5.174
LGA    P     126      P     126          3.674
LGA    N     127      N     127          3.993
LGA    L     128      L     128          2.029
LGA    L     129      L     129          3.747
LGA    L     130      L     130          7.924
LGA    P     131      P     131         10.782
LGA    P     132      P     132         13.062
LGA    H     133      H     133         16.239
LGA    L     134      L     134         13.528
LGA    V     135      V     135         13.643

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  135  135    4.0     39    2.35    24.259    22.286     1.591

LGA_LOCAL      RMSD =  2.351  Number of atoms =   39  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 18.135  Number of atoms =  135 
Std_ALL_ATOMS  RMSD = 15.135  (standard rmsd on all 135 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.030693 * X  +   0.750782 * Y  +  -0.659836 * Z  +  19.956642
  Y_new =   0.997274 * X  +   0.067323 * Y  +   0.030214 * Z  +  -3.673329
  Z_new =   0.067106 * X  +  -0.657110 * Y  +  -0.750802 * Z  +  16.369865 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -2.422643    0.718949  [ DEG:  -138.8072     41.1928 ]
  Theta =  -0.067157   -3.074436  [ DEG:    -3.8478   -176.1522 ]
  Phi   =   1.601563   -1.540029  [ DEG:    91.7628    -88.2372 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0319TS599_2                                  
REMARK     2: T0319.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0319TS599_2.T0319.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  135  135   4.0   39   2.35  22.286    15.13
REMARK  ---------------------------------------------------------- 
MOLECULE T0319TS599_2
PFRMAT TS                                                                       
TARGET T0319                                                                    
MODEL  2                                                                        
PARENT N/A                                                                      
ATOM      1  CA  MET     1      25.048  -5.670   4.702  1.00  0.00              
ATOM      2  CA  LYS     2      25.991  -1.774   5.606  1.00  0.00              
ATOM      3  CA  PHE     3      28.437   0.647   8.084  1.00  0.00              
ATOM      4  CA  LEU     4      26.915  -0.116  11.291  1.00  0.00              
ATOM      5  CA  THR     5      26.420  -3.851  10.630  1.00  0.00              
ATOM      6  CA  THR     6      30.014  -4.331   9.478  1.00  0.00              
ATOM      7  CA  ASN     7      31.274  -2.534  12.606  1.00  0.00              
ATOM      8  CA  PHE     8      29.152  -4.586  14.957  1.00  0.00              
ATOM      9  CA  LEU     9      30.244  -7.954  13.449  1.00  0.00              
ATOM     10  CA  LYS    10      33.943  -7.067  13.501  1.00  0.00              
ATOM     11  CA  CYS    11      34.329  -5.254  16.852  1.00  0.00              
ATOM     12  CA  SER    12      35.278  -1.723  15.987  1.00  0.00              
ATOM     13  CA  VAL    13      36.563   0.483  18.754  1.00  0.00              
ATOM     14  CA  LYS    14      33.947   3.255  18.974  1.00  0.00              
ATOM     15  CA  ALA    15      32.757   3.177  15.379  1.00  0.00              
ATOM     16  CA  CYS    16      29.440   1.332  15.613  1.00  0.00              
ATOM     17  CA  ASP    17      26.948   3.568  13.820  1.00  0.00              
ATOM     18  CA  THR    18      23.362   3.967  14.873  1.00  0.00              
ATOM     19  CA  SER    19      21.972   6.209  12.186  1.00  0.00              
ATOM     20  CA  ASN    20      19.697   8.992  13.285  1.00  0.00              
ATOM     21  CA  ASP    21      16.899   8.619  10.797  1.00  0.00              
ATOM     22  CA  ASN    22      16.573   4.868  10.518  1.00  0.00              
ATOM     23  CA  PHE    23      18.807   2.891  12.735  1.00  0.00              
ATOM     24  CA  PRO    24      18.302   1.477  16.081  1.00  0.00              
ATOM     25  CA  LEU    25      21.035   1.932  18.729  1.00  0.00              
ATOM     26  CA  GLN    26      21.303  -0.690  21.353  1.00  0.00              
ATOM     27  CA  TYR    27      22.547   0.102  24.786  1.00  0.00              
ATOM     28  CA  ASP    28      23.681  -2.696  27.015  1.00  0.00              
ATOM     29  CA  GLY    29      24.786  -1.779  30.561  1.00  0.00              
ATOM     30  CA  SER    30      28.454  -2.711  30.191  1.00  0.00              
ATOM     31  CA  LYS    31      28.557  -0.761  26.933  1.00  0.00              
ATOM     32  CA  CYS    32      27.034   2.429  28.223  1.00  0.00              
ATOM     33  CA  GLN    33      29.665   2.510  31.016  1.00  0.00              
ATOM     34  CA  LEU    34      32.400   1.972  28.417  1.00  0.00              
ATOM     35  CA  VAL    35      31.106   4.737  26.113  1.00  0.00              
ATOM     36  CA  GLN    36      30.988   7.282  28.950  1.00  0.00              
ATOM     37  CA  ASP    37      34.668   6.511  29.762  1.00  0.00              
ATOM     38  CA  GLU    38      35.931   6.549  26.171  1.00  0.00              
ATOM     39  CA  SER    39      37.864   3.242  26.123  1.00  0.00              
ATOM     40  CA  ILE    40      36.410   1.498  23.063  1.00  0.00              
ATOM     41  CA  GLU    41      36.796  -2.136  24.070  1.00  0.00              
ATOM     42  CA  PHE    42      34.274  -4.087  21.927  1.00  0.00              
ATOM     43  CA  ASN    43      32.858  -7.007  23.897  1.00  0.00              
ATOM     44  CA  PRO    44      32.247  -9.980  21.614  1.00  0.00              
ATOM     45  CA  GLU    45      29.158 -10.967  23.591  1.00  0.00              
ATOM     46  CA  PHE    46      27.444  -7.624  23.013  1.00  0.00              
ATOM     47  CA  LEU    47      28.268  -7.723  19.349  1.00  0.00              
ATOM     48  CA  LEU    48      26.907 -11.246  19.029  1.00  0.00              
ATOM     49  CA  ASN    49      23.721 -10.308  20.805  1.00  0.00              
ATOM     50  CA  ILE    50      23.330  -7.310  18.452  1.00  0.00              
ATOM     51  CA  VAL    51      23.882  -9.563  15.412  1.00  0.00              
ATOM     52  CA  ASP    52      21.404 -12.102  16.593  1.00  0.00              
ATOM     53  CA  ARG    53      18.776  -9.315  16.757  1.00  0.00              
ATOM     54  CA  VAL    54      19.648  -7.490  13.596  1.00  0.00              
ATOM     55  CA  ASP    55      16.839  -7.103  11.137  1.00  0.00              
ATOM     56  CA  TRP    56      18.825  -7.606   7.879  1.00  0.00              
ATOM     57  CA  PRO    57      16.039  -6.664   5.557  1.00  0.00              
ATOM     58  CA  ALA    58      15.658  -3.310   7.390  1.00  0.00              
ATOM     59  CA  VAL    59      19.342  -2.628   7.212  1.00  0.00              
ATOM     60  CA  LEU    60      19.441  -3.381   3.455  1.00  0.00              
ATOM     61  CA  THR    61      16.526  -1.056   2.953  1.00  0.00              
ATOM     62  CA  VAL    62      18.088   1.703   5.000  1.00  0.00              
ATOM     63  CA  ALA    63      21.320   1.372   2.957  1.00  0.00              
ATOM     64  CA  ALA    64      19.323   1.525  -0.309  1.00  0.00              
ATOM     65  CA  GLU    65      17.455   4.639   0.801  1.00  0.00              
ATOM     66  CA  LEU    66      20.719   6.367   1.795  1.00  0.00              
ATOM     67  CA  GLY    67      22.676   5.519  -1.354  1.00  0.00              
ATOM     68  CA  ASN    68      25.148   3.167   0.402  1.00  0.00              
ATOM     69  CA  ASN    69      27.024   1.625  -2.473  1.00  0.00              
ATOM     70  CA  ALA    70      30.182   0.941  -0.383  1.00  0.00              
ATOM     71  CA  LEU    71      28.811  -1.360   2.320  1.00  0.00              
ATOM     72  CA  PRO    72      29.348  -5.050   1.617  1.00  0.00              
ATOM     73  CA  PRO    73      26.237  -6.919   0.646  1.00  0.00              
ATOM     74  CA  THR    74      26.518  -9.412   3.545  1.00  0.00              
ATOM     75  CA  LYS    75      22.960 -10.559   4.038  1.00  0.00              
ATOM     76  CA  PRO    76      22.895 -14.252   3.186  1.00  0.00              
ATOM     77  CA  SER    77      19.588 -14.795   1.343  1.00  0.00              
ATOM     78  CA  PHE    78      18.618 -17.955   3.149  1.00  0.00              
ATOM     79  CA  PRO    79      19.379 -21.352   1.718  1.00  0.00              
ATOM     80  CA  SER    80      21.989 -22.873   4.060  1.00  0.00              
ATOM     81  CA  SER    81      20.190 -26.153   4.744  1.00  0.00              
ATOM     82  CA  ILE    82      16.543 -25.076   4.813  1.00  0.00              
ATOM     83  CA  GLN    83      16.035 -26.396   8.338  1.00  0.00              
ATOM     84  CA  GLU    84      18.925 -24.438   9.862  1.00  0.00              
ATOM     85  CA  LEU    85      17.903 -21.084   8.411  1.00  0.00              
ATOM     86  CA  THR    86      14.411 -21.538   9.850  1.00  0.00              
ATOM     87  CA  ASP    87      15.180 -22.481  13.482  1.00  0.00              
ATOM     88  CA  ASP    88      17.759 -19.837  14.510  1.00  0.00              
ATOM     89  CA  ASP    89      15.652 -17.086  12.914  1.00  0.00              
ATOM     90  CA  MET    90      12.622 -18.346  14.867  1.00  0.00              
ATOM     91  CA  ALA    91      14.383 -17.997  18.243  1.00  0.00              
ATOM     92  CA  ILE    92      15.524 -14.423  17.446  1.00  0.00              
ATOM     93  CA  LEU    93      12.018 -13.571  16.214  1.00  0.00              
ATOM     94  CA  ASN    94      10.370 -14.819  19.453  1.00  0.00              
ATOM     95  CA  ASP    95      12.726 -12.744  21.557  1.00  0.00              
ATOM     96  CA  LEU    96      11.975  -9.662  19.396  1.00  0.00              
ATOM     97  CA  HIS    97       8.225 -10.245  19.747  1.00  0.00              
ATOM     98  CA  THR    98       8.615 -10.555  23.528  1.00  0.00              
ATOM     99  CA  LEU    99      10.624  -7.318  23.679  1.00  0.00              
ATOM    100  CA  LEU   100       7.989  -5.464  21.630  1.00  0.00              
ATOM    101  CA  LEU   101       5.101  -6.664  23.838  1.00  0.00              
ATOM    102  CA  GLN   102       6.920  -5.404  26.993  1.00  0.00              
ATOM    103  CA  THR   103       8.145  -2.085  25.823  1.00  0.00              
ATOM    104  CA  SER   104       8.158   1.096  27.932  1.00  0.00              
ATOM    105  CA  ILE   105       8.366   4.282  26.004  1.00  0.00              
ATOM    106  CA  ALA   106      10.119   7.231  27.475  1.00  0.00              
ATOM    107  CA  GLU   107      10.819  10.321  25.373  1.00  0.00              
ATOM    108  CA  GLY   108      12.109   8.471  22.226  1.00  0.00              
ATOM    109  CA  GLU   109      13.881   5.934  24.347  1.00  0.00              
ATOM    110  CA  MET   110      12.643   2.388  24.476  1.00  0.00              
ATOM    111  CA  LYS   111      13.133   0.442  27.668  1.00  0.00              
ATOM    112  CA  CYS   112      12.345  -3.230  27.961  1.00  0.00              
ATOM    113  CA  ARG   113      10.736  -4.192  31.260  1.00  0.00              
ATOM    114  CA  ASN   114      11.665  -7.823  31.216  1.00  0.00              
ATOM    115  CA  CYS   115      15.174  -7.947  29.929  1.00  0.00              
ATOM    116  CA  GLY   116      16.461  -4.523  30.693  1.00  0.00              
ATOM    117  CA  HIS   117      17.755  -3.750  27.244  1.00  0.00              
ATOM    118  CA  ILE   118      17.815  -0.167  26.344  1.00  0.00              
ATOM    119  CA  TYR   119      17.054   0.884  22.803  1.00  0.00              
ATOM    120  CA  TYR   120      17.873   4.373  21.679  1.00  0.00              
ATOM    121  CA  ILE   121      16.348   5.742  18.640  1.00  0.00              
ATOM    122  CA  LYS   122      17.182   9.327  17.770  1.00  0.00              
ATOM    123  CA  ASN   123      15.461  10.357  14.503  1.00  0.00              
ATOM    124  CA  GLY   124      12.661   7.865  14.736  1.00  0.00              
ATOM    125  CA  ILE   125      11.262   7.969  18.111  1.00  0.00              
ATOM    126  CA  PRO   126       9.791  11.000  19.775  1.00  0.00              
ATOM    127  CA  ASN   127       7.587   8.906  22.190  1.00  0.00              
ATOM    128  CA  LEU   128       6.635   6.057  19.942  1.00  0.00              
ATOM    129  CA  LEU   129       4.256   3.959  21.962  1.00  0.00              
ATOM    130  CA  LEU   130       3.740   0.482  20.422  1.00  0.00              
ATOM    131  CA  PRO   131       0.377  -1.201  20.945  1.00  0.00              
ATOM    132  CA  PRO   132       0.286  -4.749  22.169  1.00  0.00              
ATOM    133  CA  HIS   133      -0.661  -6.134  18.622  1.00  0.00              
ATOM    134  CA  LEU   134       2.593  -4.027  16.981  1.00  0.00              
ATOM    135  CA  VAL   135       4.282  -0.335  15.883  1.00  0.00              
TER                                                                             
END
