
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  135 (  135),  selected  135 , name T0319TS599_3
# Molecule2: number of CA atoms  135 ( 1055),  selected  135 , name T0319.pdb
# PARAMETERS: T0319TS599_3.T0319.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    46        32 - 77          4.89    17.54
  LONGEST_CONTINUOUS_SEGMENT:    46        33 - 78          4.84    17.65
  LCS_AVERAGE:     25.72

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    29        49 - 77          1.98    17.52
  LCS_AVERAGE:     13.64

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    18        51 - 68          1.00    17.45
  LCS_AVERAGE:      7.80

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  135
LCS_GDT     M       1     M       1      3    5   15     2    3    4    4    5    9    9    9   10   13   17   20   21   22   25   28   32   40   43   50 
LCS_GDT     K       2     K       2      3    9   16     0    3    4    4    6    9    9   13   15   18   22   24   28   32   39   40   40   44   47   50 
LCS_GDT     F       3     F       3      7    9   17     4    5    7    7    7   10   11   13   15   18   22   24   28   32   34   37   40   44   47   50 
LCS_GDT     L       4     L       4      7    9   17     4    6    7    7    9   10   12   13   16   18   22   26   29   34   39   40   43   45   49   53 
LCS_GDT     T       5     T       5      7    9   19     5    6    7    7    7    9   12   13   16   18   22   24   28   32   39   40   40   45   49   51 
LCS_GDT     T       6     T       6      7    9   19     5    6    7    7    9   10   12   13   16   18   22   24   28   32   34   37   39   44   49   51 
LCS_GDT     N       7     N       7      7    9   19     5    6    7    9   12   12   13   14   18   21   23   24   29   33   38   42   44   45   49   51 
LCS_GDT     F       8     F       8      7    9   19     5    6    7    7   12   12   15   17   18   21   24   26   29   33   39   42   44   45   49   56 
LCS_GDT     L       9     L       9      7    9   19     5    6    7    7    8   10   12   17   18   21   24   24   28   32   39   40   40   44   49   51 
LCS_GDT     K      10     K      10      3    9   19     3    3    3    6    8    9   15   17   18   21   24   26   28   31   34   37   39   44   49   56 
LCS_GDT     C      11     C      11      4    8   19     3    4    5    7    8    9   13   15   16   18   22   24   28   32   34   37   39   49   52   56 
LCS_GDT     S      12     S      12      4    8   19     3    4    5    7    8   10   11   13   16   18   22   24   28   32   34   37   39   44   49   56 
LCS_GDT     V      13     V      13      4    8   19     3    4    5    7    8   10   13   15   16   18   22   24   28   32   34   40   44   49   52   56 
LCS_GDT     K      14     K      14      4    8   19     3    4    5    7    8   10   13   15   16   18   22   26   28   35   37   41   44   49   52   56 
LCS_GDT     A      15     A      15      3    8   19     3    4    5    6    8   10   11   13   15   17   20   23   24   27   30   40   44   49   52   56 
LCS_GDT     C      16     C      16      3    8   19     3    4    5    7    8   10   13   15   16   18   23   26   29   35   37   41   44   49   52   56 
LCS_GDT     D      17     D      17      3    6   19     3    4    4    5    8    9   13   15   16   18   23   26   29   31   34   40   44   49   52   56 
LCS_GDT     T      18     T      18      3    6   21     3    3    4    5    6    7   10   13   15   18   22   23   29   31   34   39   39   44   49   56 
LCS_GDT     S      19     S      19      4    6   23     3    5    7    8    9   10   13   15   18   19   23   26   29   32   34   39   42   45   49   56 
LCS_GDT     N      20     N      20      4    6   23     3    4    4    7    9   10   13   15   16   19   23   26   29   32   34   39   42   45   49   56 
LCS_GDT     D      21     D      21      4    6   23     3    4    4    5    6    7   13   15   16   18   22   23   26   28   30   35   36   41   44   49 
LCS_GDT     N      22     N      22      4    6   23     3    4    4    6    8   12   13   14   18   19   23   25   28   33   38   42   44   45   49   51 
LCS_GDT     F      23     F      23      6    8   31     3    3    7    9   12   12   13   14   18   19   23   29   32   35   38   42   44   49   52   56 
LCS_GDT     P      24     P      24      6    8   31     3    5    7    9   12   12   13   15   18   21   25   29   32   35   41   43   46   50   53   56 
LCS_GDT     L      25     L      25      6    8   31     4    5    7    9   12   12   13   15   18   21   26   29   32   37   43   47   49   51   53   57 
LCS_GDT     Q      26     Q      26      6    8   31     4    5    7    9   13   14   18   21   25   25   29   31   34   39   44   47   50   52   56   57 
LCS_GDT     Y      27     Y      27      6    8   33     4    5    7    9   13   14   18   21   25   28   32   32   35   39   44   47   50   52   56   58 
LCS_GDT     D      28     D      28      6    8   33     4    5    7    9   12   12   17   19   23   28   32   32   35   39   44   47   50   52   56   58 
LCS_GDT     G      29     G      29      5    8   35     3    5    7    8    9   12   13   14   19   24   28   31   35   39   45   47   51   54   56   58 
LCS_GDT     S      30     S      30      4    8   35     3    4    7    9   12   12   13   14   17   21   23   32   35   39   44   47   50   52   56   58 
LCS_GDT     K      31     K      31      3    5   37     3    3    4    8   12   12   17   18   23   26   32   32   35   39   44   47   50   52   56   58 
LCS_GDT     C      32     C      32      3    4   46     3    4    7    9   12   14   17   21   23   26   32   32   35   39   45   47   51   54   56   58 
LCS_GDT     Q      33     Q      33      3    4   46     3    3    7    9   12   12   13   16   20   24   28   32   37   43   45   48   51   54   56   58 
LCS_GDT     L      34     L      34      3    3   46     3    3    5    9   12   12   14   17   21   24   28   31   32   39   45   47   51   54   56   58 
LCS_GDT     V      35     V      35      3    4   46     0    3    4    4    8   13   17   21   24   28   34   37   42   45   46   48   51   54   56   58 
LCS_GDT     Q      36     Q      36      3   20   46     3    3    3    3    3   17   22   25   27   29   31   34   39   45   46   48   51   54   56   58 
LCS_GDT     D      37     D      37      3   20   46     3    3    4    7   13   17   19   23   26   29   31   35   40   45   46   48   51   54   56   58 
LCS_GDT     E      38     E      38      3   22   46     3    3    4    9   15   17   20   25   27   29   31   35   40   45   45   48   51   54   56   58 
LCS_GDT     S      39     S      39      3   24   46     6   14   16   20   22   24   27   28   34   38   39   39   42   45   46   48   51   54   56   58 
LCS_GDT     I      40     I      40      3   24   46     3    3    4    5   15   23   25   28   34   38   39   39   42   45   46   48   51   54   56   58 
LCS_GDT     E      41     E      41     15   25   46     8   14   16   20   22   24   27   28   34   38   39   39   42   45   46   48   51   54   56   58 
LCS_GDT     F      42     F      42     15   25   46     4    9   16   19   22   24   27   28   34   38   39   39   42   45   46   48   51   54   56   58 
LCS_GDT     N      43     N      43     15   25   46     9   14   16   20   22   24   27   30   34   38   39   39   42   45   46   48   51   54   56   58 
LCS_GDT     P      44     P      44     15   25   46     9   14   16   20   22   24   27   30   34   38   39   39   42   45   46   48   51   54   56   58 
LCS_GDT     E      45     E      45     15   26   46     9   14   16   20   22   24   30   32   34   38   39   39   42   45   46   48   51   54   56   58 
LCS_GDT     F      46     F      46     15   26   46     9   14   16   20   22   25   30   32   34   38   39   39   42   45   46   48   51   54   56   58 
LCS_GDT     L      47     L      47     15   27   46     9   14   16   20   22   25   30   32   34   38   39   39   42   45   46   48   51   54   56   58 
LCS_GDT     L      48     L      48     15   27   46     9   14   16   20   22   25   30   32   34   38   39   39   42   45   46   48   51   54   56   58 
LCS_GDT     N      49     N      49     15   29   46     9   14   16   20   24   27   30   32   34   38   39   39   42   45   46   48   51   54   56   58 
LCS_GDT     I      50     I      50     15   29   46     9   14   16   20   24   27   30   32   34   38   39   39   42   45   46   48   51   54   56   58 
LCS_GDT     V      51     V      51     18   29   46     9   14   16   20   24   27   30   32   34   38   39   39   42   45   46   48   51   54   56   58 
LCS_GDT     D      52     D      52     18   29   46     9   14   17   20   24   27   30   32   34   38   39   39   42   45   46   48   51   54   56   58 
LCS_GDT     R      53     R      53     18   29   46     9   14   17   23   26   27   30   32   34   38   39   39   42   45   46   48   51   54   56   58 
LCS_GDT     V      54     V      54     18   29   46    14   14   17   23   26   27   30   32   34   38   39   39   42   45   46   48   51   54   56   58 
LCS_GDT     D      55     D      55     18   29   46    14   14   17   23   26   27   30   32   34   38   39   39   42   45   46   48   51   54   56   58 
LCS_GDT     W      56     W      56     18   29   46    14   14   17   23   26   27   30   32   34   38   39   39   42   45   46   48   51   54   56   58 
LCS_GDT     P      57     P      57     18   29   46    14   14   17   22   26   27   30   32   34   38   39   39   42   45   46   48   51   54   56   58 
LCS_GDT     A      58     A      58     18   29   46    14   14   17   23   26   27   30   32   34   38   39   39   42   45   46   48   51   54   56   58 
LCS_GDT     V      59     V      59     18   29   46    14   14   17   23   26   27   30   32   34   38   39   39   42   45   46   48   51   54   56   58 
LCS_GDT     L      60     L      60     18   29   46    14   14   17   23   26   27   30   32   34   38   39   39   42   45   46   48   51   54   56   58 
LCS_GDT     T      61     T      61     18   29   46    14   14   17   23   26   27   30   32   34   38   39   39   42   45   46   48   51   54   56   58 
LCS_GDT     V      62     V      62     18   29   46    14   14   17   23   26   27   30   32   34   38   39   39   42   45   46   48   51   54   56   58 
LCS_GDT     A      63     A      63     18   29   46    14   14   17   23   26   27   30   32   34   38   39   39   42   45   46   48   51   54   56   58 
LCS_GDT     A      64     A      64     18   29   46    14   14   17   23   26   27   30   32   34   38   39   39   42   45   46   48   51   54   56   58 
LCS_GDT     E      65     E      65     18   29   46    14   14   17   23   26   27   30   32   34   38   39   39   42   45   46   48   51   54   56   58 
LCS_GDT     L      66     L      66     18   29   46    14   14   17   23   26   27   30   32   34   38   39   39   42   45   46   48   51   54   56   58 
LCS_GDT     G      67     G      67     18   29   46    14   14   17   23   26   27   30   32   34   38   39   39   42   45   46   48   51   54   56   58 
LCS_GDT     N      68     N      68     18   29   46     3   14   17   23   26   27   30   32   34   38   39   39   42   45   46   48   51   54   56   58 
LCS_GDT     N      69     N      69     17   29   46     3    7   11   23   26   27   30   32   34   38   39   39   42   45   46   48   51   54   56   58 
LCS_GDT     A      70     A      70     10   29   46     4    7   17   23   26   27   30   32   34   38   39   39   42   45   46   48   51   54   56   58 
LCS_GDT     L      71     L      71     10   29   46     4    7   17   23   26   27   30   32   34   38   39   39   42   45   46   48   51   54   56   58 
LCS_GDT     P      72     P      72      9   29   46     4    7   17   23   26   27   30   32   34   38   39   39   42   45   46   48   51   54   56   58 
LCS_GDT     P      73     P      73      9   29   46     4    7   13   23   26   27   30   32   34   38   39   39   42   45   46   48   51   54   56   58 
LCS_GDT     T      74     T      74      9   29   46     4    7   13   23   26   27   30   32   34   38   39   39   42   45   46   48   51   54   56   58 
LCS_GDT     K      75     K      75      9   29   46     4    5   10   23   26   27   30   32   34   38   39   39   42   45   46   48   51   54   56   58 
LCS_GDT     P      76     P      76      9   29   46     4    6   15   23   26   27   30   30   33   35   39   39   42   45   46   48   51   54   56   58 
LCS_GDT     S      77     S      77      9   29   46     4    7    9   21   26   27   30   32   34   38   39   39   42   45   46   48   51   54   56   58 
LCS_GDT     F      78     F      78      6   24   46     4    5    7    7    8   21   23   26   27   28   32   35   40   43   45   47   50   53   56   58 
LCS_GDT     P      79     P      79      6   24   45     4   10   14   18   20   22   23   26   27   28   29   31   36   39   44   47   50   52   56   58 
LCS_GDT     S      80     S      80      6   24   41     4    8   14   18   20   22   23   26   27   28   29   31   34   39   43   47   49   51   56   57 
LCS_GDT     S      81     S      81      6   24   36     5    6    7   18   20   22   23   26   27   28   29   31   34   39   43   47   49   51   56   57 
LCS_GDT     I      82     I      82      6   24   36     5    6    6    8    9   12   18   26   27   28   29   30   34   39   44   47   50   52   56   58 
LCS_GDT     Q      83     Q      83      6   24   36     5    6    7    8    9   12   18   26   27   28   29   31   34   39   44   47   49   52   56   58 
LCS_GDT     E      84     E      84     17   24   36     5   15   16   18   20   22   23   26   27   28   29   32   35   39   44   47   50   52   56   58 
LCS_GDT     L      85     L      85     17   24   36     5    6   11   15   20   22   23   26   27   28   29   32   35   39   44   47   50   52   56   58 
LCS_GDT     T      86     T      86     17   24   36     3   15   16   18   20   22   23   26   27   28   32   32   35   39   44   47   50   52   56   58 
LCS_GDT     D      87     D      87     17   24   36     4   15   16   18   20   22   23   26   27   28   32   32   35   39   44   47   50   52   56   58 
LCS_GDT     D      88     D      88     17   24   36    12   15   16   18   20   22   23   26   27   28   32   32   35   39   44   47   50   52   56   58 
LCS_GDT     D      89     D      89     17   24   36    12   15   16   18   20   22   23   26   27   28   32   32   35   39   44   47   50   52   56   58 
LCS_GDT     M      90     M      90     17   24   36    12   15   16   18   20   22   23   26   27   28   32   32   35   39   44   47   50   52   56   58 
LCS_GDT     A      91     A      91     17   24   36    12   15   16   18   20   22   23   26   27   28   32   32   35   39   44   47   50   52   56   58 
LCS_GDT     I      92     I      92     17   24   36    12   15   16   18   20   22   23   26   27   28   32   32   35   39   44   47   50   52   56   58 
LCS_GDT     L      93     L      93     17   24   36    12   15   16   18   20   22   23   26   27   28   32   32   35   39   44   47   50   52   56   58 
LCS_GDT     N      94     N      94     17   24   36    12   15   16   18   20   22   23   26   27   28   32   32   35   39   44   47   50   52   56   58 
LCS_GDT     D      95     D      95     17   24   36    12   15   16   18   20   22   23   26   27   28   32   32   35   39   44   47   50   52   56   58 
LCS_GDT     L      96     L      96     17   24   36    12   15   16   18   20   22   23   26   27   28   32   32   35   39   44   47   50   52   56   58 
LCS_GDT     H      97     H      97     17   24   36    12   15   16   18   20   22   23   26   27   28   32   32   35   39   44   47   50   52   56   58 
LCS_GDT     T      98     T      98     17   24   36    12   15   16   18   20   22   23   26   27   28   32   32   35   39   44   47   50   52   56   58 
LCS_GDT     L      99     L      99     17   24   36    12   15   16   18   20   22   23   26   27   28   32   32   35   39   44   47   50   52   56   58 
LCS_GDT     L     100     L     100     17   24   36    11   15   16   18   20   22   23   26   27   28   32   32   35   39   44   47   50   52   56   58 
LCS_GDT     L     101     L     101     16   24   36     4    6   16   17   20   21   23   26   27   28   32   32   35   39   44   47   50   52   56   58 
LCS_GDT     Q     102     Q     102      6   21   36     3    5    8   12   17   21   23   26   27   28   32   32   35   39   44   47   50   52   56   58 
LCS_GDT     T     103     T     103      6   21   36     3    5    8   12   19   22   23   26   27   28   32   32   35   39   44   47   50   52   56   58 
LCS_GDT     S     104     S     104      6   21   36     3    5    9   14   19   22   23   25   27   28   32   32   35   39   44   47   50   52   56   58 
LCS_GDT     I     105     I     105      6   10   36     3    5    8    8   10   14   21   23   25   27   33   37   37   41   45   47   50   52   56   58 
LCS_GDT     A     106     A     106      6   10   36     3    5    8    8   10   11   13   23   25   27   28   37   37   41   45   47   49   52   56   58 
LCS_GDT     E     107     E     107      6   18   36     1    5    8    8   11   15   17   19   28   31   33   37   39   43   45   46   49   51   56   58 
LCS_GDT     G     108     G     108     15   18   36     4   11   15   17   17   18   18   20   27   34   38   39   42   45   46   48   51   54   56   58 
LCS_GDT     E     109     E     109     15   18   36     5   13   15   17   17   18   18   19   22   25   32   32   35   38   46   48   51   54   56   58 
LCS_GDT     M     110     M     110     15   18   36     3   13   15   17   17   18   18   19   21   28   32   32   34   38   41   45   49   51   54   56 
LCS_GDT     K     111     K     111     15   18   27     3   13   15   17   17   18   18   19   21   22   25   30   32   36   38   42   44   47   49   54 
LCS_GDT     C     112     C     112     15   18   27     5   13   15   17   17   18   18   19   21   22   23   23   30   30   37   40   41   44   47   52 
LCS_GDT     R     113     R     113     15   18   27     6   13   15   17   17   18   18   19   21   22   23   23   25   28   30   35   41   44   46   49 
LCS_GDT     N     114     N     114     15   18   27     6   13   15   17   17   18   18   19   21   22   23   23   25   28   30   35   39   42   45   49 
LCS_GDT     C     115     C     115     15   18   27     5   13   15   17   17   18   18   19   21   22   23   23   25   28   30   35   39   42   46   49 
LCS_GDT     G     116     G     116     15   18   27     6   13   15   17   17   18   18   19   21   22   23   23   25   28   34   39   41   44   47   49 
LCS_GDT     H     117     H     117     15   18   27     6   13   15   17   17   18   18   19   21   22   23   25   30   32   36   39   41   44   47   49 
LCS_GDT     I     118     I     118     15   18   27     6   13   15   17   17   18   18   19   21   27   29   30   33   36   38   42   45   50   52   55 
LCS_GDT     Y     119     Y     119     15   18   27     6   13   15   17   17   18   19   23   26   29   32   34   37   38   41   45   49   51   54   56 
LCS_GDT     Y     120     Y     120     15   18   27     5   13   15   17   23   26   27   29   30   32   36   38   40   43   46   48   51   54   56   58 
LCS_GDT     I     121     I     121     15   18   27     3   13   15   23   26   27   30   30   32   35   37   39   42   45   46   48   51   54   56   58 
LCS_GDT     K     122     K     122     15   18   27     4   10   15   17   17   18   18   28   31   35   37   38   40   43   44   47   51   54   56   58 
LCS_GDT     N     123     N     123      7   18   27     3    6   10   17   17   18   18   19   21   22   23   24   28   39   43   45   46   50   52   56 
LCS_GDT     G     124     G     124      7   18   27     3    7   13   17   17   18   18   19   21   22   23   32   35   39   43   45   48   50   55   58 
LCS_GDT     I     125     I     125      4   18   27     3    4    8   12   14   16   17   19   21   22   23   26   32   35   38   42   46   50   53   57 
LCS_GDT     P     126     P     126      4    5   27     3    4    4    8   10   13   17   19   21   22   23   26   32   35   38   42   44   49   52   56 
LCS_GDT     N     127     N     127      7    8   27     3    4    6    7    8    8    9   14   18   19   23   24   27   33   38   42   44   45   49   56 
LCS_GDT     L     128     L     128      7    8   27     4    6    6    7   10   12   13   16   19   19   23   27   32   34   38   42   44   45   49   51 
LCS_GDT     L     129     L     129      7    8   27     4    6    6    7    8    8    9   18   19   21   23   23   25   28   33   39   42   45   49   51 
LCS_GDT     L     130     L     130      7    8   27     4    6    6    7    8    8   12   27   30   33   37   38   39   40   43   45   49   52   55   58 
LCS_GDT     P     131     P     131      7    8   27     4    6    6    7   11   21   28   29   30   35   37   38   39   40   43   45   46   51   54   56 
LCS_GDT     P     132     P     132      7    8   26     4    6    6   12   18   26   28   29   31   35   37   38   39   40   43   45   46   48   52   55 
LCS_GDT     H     133     H     133      7    8   15     4    6    6    7    8    8   11   11   12   35   37   38   39   40   43   45   47   51   54   56 
LCS_GDT     L     134     L     134      3    8   15     2    3    3    5    8    8   11   11   15   35   37   38   39   40   43   45   51   54   56   58 
LCS_GDT     V     135     V     135      3    4   15     0    3    3    5    7    9   24   26   31   35   37   38   39   40   43   45   51   54   56   58 
LCS_AVERAGE  LCS_A:  15.72  (   7.80   13.64   25.72 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     14     15     17     23     26     27     30     32     34     38     39     39     42     45     46     48     51     54     56     58 
GDT PERCENT_CA  10.37  11.11  12.59  17.04  19.26  20.00  22.22  23.70  25.19  28.15  28.89  28.89  31.11  33.33  34.07  35.56  37.78  40.00  41.48  42.96
GDT RMS_LOCAL    0.22   0.43   0.75   1.45   1.56   1.65   2.05   2.45   2.76   3.22   3.33   3.33   3.82   4.21   4.43   4.70   5.13   5.50   5.81   6.10
GDT RMS_ALL_CA  17.18  18.24  17.29  17.41  17.32  17.35  17.40  17.92  18.10  18.27  18.24  18.25  17.87  17.92  17.69  17.62  17.41  17.28  17.15  17.02

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         23.439
LGA    K       2      K       2         19.608
LGA    F       3      F       3         20.232
LGA    L       4      L       4         15.465
LGA    T       5      T       5         17.911
LGA    T       6      T       6         21.581
LGA    N       7      N       7         18.948
LGA    F       8      F       8         18.026
LGA    L       9      L       9         21.918
LGA    K      10      K      10         27.769
LGA    C      11      C      11         28.744
LGA    S      12      S      12         31.237
LGA    V      13      V      13         36.014
LGA    K      14      K      14         37.126
LGA    A      15      A      15         36.971
LGA    C      16      C      16         35.290
LGA    D      17      D      17         35.531
LGA    T      18      T      18         37.032
LGA    S      19      S      19         34.483
LGA    N      20      N      20         30.851
LGA    D      21      D      21         27.256
LGA    N      22      N      22         25.245
LGA    F      23      F      23         21.643
LGA    P      24      P      24         19.617
LGA    L      25      L      25         18.493
LGA    Q      26      Q      26         19.208
LGA    Y      27      Y      27         14.733
LGA    D      28      D      28         16.700
LGA    G      29      G      29         14.954
LGA    S      30      S      30         19.215
LGA    K      31      K      31         18.662
LGA    C      32      C      32         14.124
LGA    Q      33      Q      33         13.475
LGA    L      34      L      34         13.962
LGA    V      35      V      35         11.014
LGA    Q      36      Q      36         11.757
LGA    D      37      D      37         10.545
LGA    E      38      E      38         11.537
LGA    S      39      S      39          8.836
LGA    I      40      I      40          6.402
LGA    E      41      E      41          8.005
LGA    F      42      F      42          7.461
LGA    N      43      N      43          6.093
LGA    P      44      P      44          5.500
LGA    E      45      E      45          3.869
LGA    F      46      F      46          2.969
LGA    L      47      L      47          3.078
LGA    L      48      L      48          3.045
LGA    N      49      N      49          1.508
LGA    I      50      I      50          1.380
LGA    V      51      V      51          2.777
LGA    D      52      D      52          2.988
LGA    R      53      R      53          2.483
LGA    V      54      V      54          3.116
LGA    D      55      D      55          2.443
LGA    W      56      W      56          0.883
LGA    P      57      P      57          2.103
LGA    A      58      A      58          2.280
LGA    V      59      V      59          1.232
LGA    L      60      L      60          1.064
LGA    T      61      T      61          1.801
LGA    V      62      V      62          2.052
LGA    A      63      A      63          1.580
LGA    A      64      A      64          1.620
LGA    E      65      E      65          1.080
LGA    L      66      L      66          1.677
LGA    G      67      G      67          2.384
LGA    N      68      N      68          2.493
LGA    N      69      N      69          2.905
LGA    A      70      A      70          2.822
LGA    L      71      L      71          2.494
LGA    P      72      P      72          2.922
LGA    P      73      P      73          2.928
LGA    T      74      T      74          3.278
LGA    K      75      K      75          3.787
LGA    P      76      P      76          4.973
LGA    S      77      S      77          3.554
LGA    F      78      F      78          9.630
LGA    P      79      P      79         13.662
LGA    S      80      S      80         18.878
LGA    S      81      S      81         23.231
LGA    I      82      I      82         22.682
LGA    Q      83      Q      83         28.464
LGA    E      84      E      84         25.858
LGA    L      85      L      85         22.633
LGA    T      86      T      86         26.755
LGA    D      87      D      87         29.082
LGA    D      88      D      88         24.214
LGA    D      89      D      89         20.860
LGA    M      90      M      90         25.966
LGA    A      91      A      91         26.616
LGA    I      92      I      92         20.291
LGA    L      93      L      93         20.460
LGA    N      94      N      94         25.710
LGA    D      95      D      95         23.363
LGA    L      96      L      96         17.275
LGA    H      97      H      97         20.944
LGA    T      98      T      98         23.996
LGA    L      99      L      99         18.944
LGA    L     100      L     100         14.886
LGA    L     101      L     101         18.719
LGA    Q     102      Q     102         20.878
LGA    T     103      T     103         18.027
LGA    S     104      S     104         16.441
LGA    I     105      I     105         13.167
LGA    A     106      A     106         14.288
LGA    E     107      E     107         11.006
LGA    G     108      G     108          7.915
LGA    E     109      E     109         11.348
LGA    M     110      M     110         14.269
LGA    K     111      K     111         18.529
LGA    C     112      C     112         21.709
LGA    R     113      R     113         25.432
LGA    N     114      N     114         29.528
LGA    C     115      C     115         31.044
LGA    G     116      G     116         28.263
LGA    H     117      H     117         24.999
LGA    I     118      I     118         20.215
LGA    Y     119      Y     119         15.510
LGA    Y     120      Y     120         10.232
LGA    I     121      I     121          6.250
LGA    K     122      K     122          5.800
LGA    N     123      N     123          8.586
LGA    G     124      G     124          7.943
LGA    I     125      I     125          9.382
LGA    P     126      P     126         11.785
LGA    N     127      N     127         16.680
LGA    L     128      L     128         13.283
LGA    L     129      L     129         14.772
LGA    L     130      L     130         10.436
LGA    P     131      P     131         11.805
LGA    P     132      P     132         12.440
LGA    H     133      H     133          9.332
LGA    L     134      L     134          8.655
LGA    V     135      V     135          8.191

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  135  135    4.0     32    2.45    21.852    20.267     1.255

LGA_LOCAL      RMSD =  2.449  Number of atoms =   32  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 17.896  Number of atoms =  135 
Std_ALL_ATOMS  RMSD = 15.170  (standard rmsd on all 135 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.490554 * X  +  -0.827839 * Y  +  -0.272102 * Z  +  23.016676
  Y_new =  -0.835146 * X  +   0.357489 * Y  +   0.418009 * Z  +  -3.111216
  Z_new =  -0.248771 * X  +   0.432301 * Y  +  -0.866735 * Z  +  15.078671 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.678930   -0.462663  [ DEG:   153.4913    -26.5086 ]
  Theta =   0.251411    2.890182  [ DEG:    14.4048    165.5952 ]
  Phi   =  -2.101890    1.039703  [ DEG:  -120.4294     59.5706 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0319TS599_3                                  
REMARK     2: T0319.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0319TS599_3.T0319.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  135  135   4.0   32   2.45  20.267    15.17
REMARK  ---------------------------------------------------------- 
MOLECULE T0319TS599_3
PFRMAT TS                                                                       
TARGET T0319                                                                    
MODEL  3                                                                        
PARENT N/A                                                                      
ATOM      1  CA  MET     1      32.005 -11.875  12.085  1.00  0.00              
ATOM      2  CA  LYS     2      34.810  -9.655  12.354  1.00  0.00              
ATOM      3  CA  PHE     3      38.050  -8.876  13.665  1.00  0.00              
ATOM      4  CA  LEU     4      33.922  -8.415  12.953  1.00  0.00              
ATOM      5  CA  THR     5      33.279  -7.656  16.641  1.00  0.00              
ATOM      6  CA  THR     6      36.250  -5.309  16.758  1.00  0.00              
ATOM      7  CA  ASN     7      35.035  -3.387  13.683  1.00  0.00              
ATOM      8  CA  PHE     8      31.529  -2.954  15.067  1.00  0.00              
ATOM      9  CA  LEU     9      32.727  -1.668  18.455  1.00  0.00              
ATOM     10  CA  LYS    10      35.304   0.782  16.993  1.00  0.00              
ATOM     11  CA  CYS    11      33.570   2.384  14.070  1.00  0.00              
ATOM     12  CA  SER    12      34.047   6.141  14.587  1.00  0.00              
ATOM     13  CA  VAL    13      35.086   7.987  11.501  1.00  0.00              
ATOM     14  CA  LYS    14      33.074   9.213   8.576  1.00  0.00              
ATOM     15  CA  ALA    15      31.892   6.115   6.628  1.00  0.00              
ATOM     16  CA  CYS    16      34.280   3.568   7.955  1.00  0.00              
ATOM     17  CA  ASP    17      35.040   0.596   5.782  1.00  0.00              
ATOM     18  CA  THR    18      35.818  -2.492   7.799  1.00  0.00              
ATOM     19  CA  SER    19      35.375  -5.418   5.354  1.00  0.00              
ATOM     20  CA  ASN    20      34.951  -8.543   7.375  1.00  0.00              
ATOM     21  CA  ASP    21      31.351  -8.615   8.536  1.00  0.00              
ATOM     22  CA  ASN    22      29.733  -5.991   6.405  1.00  0.00              
ATOM     23  CA  PHE    23      30.207  -2.265   6.441  1.00  0.00              
ATOM     24  CA  PRO    24      30.844  -0.031   9.345  1.00  0.00              
ATOM     25  CA  LEU    25      28.696   3.041   9.618  1.00  0.00              
ATOM     26  CA  GLN    26      29.462   6.027  11.624  1.00  0.00              
ATOM     27  CA  TYR    27      26.924   7.923  13.635  1.00  0.00              
ATOM     28  CA  ASP    28      27.915  11.573  14.324  1.00  0.00              
ATOM     29  CA  GLY    29      25.685  13.594  16.563  1.00  0.00              
ATOM     30  CA  SER    30      28.522  14.918  18.780  1.00  0.00              
ATOM     31  CA  LYS    31      29.830  11.316  19.096  1.00  0.00              
ATOM     32  CA  CYS    32      26.437   9.836  20.036  1.00  0.00              
ATOM     33  CA  GLN    33      26.128  12.511  22.789  1.00  0.00              
ATOM     34  CA  LEU    34      29.666  11.661  24.040  1.00  0.00              
ATOM     35  CA  VAL    35      28.970   7.916  24.142  1.00  0.00              
ATOM     36  CA  GLN    36      25.751   8.469  26.170  1.00  0.00              
ATOM     37  CA  ASP    37      27.475  10.839  28.654  1.00  0.00              
ATOM     38  CA  GLU    38      30.425   8.698  29.803  1.00  0.00              
ATOM     39  CA  SER    39      28.354   5.485  29.979  1.00  0.00              
ATOM     40  CA  ILE    40      30.868   2.974  28.670  1.00  0.00              
ATOM     41  CA  GLU    41      29.147  -0.349  29.485  1.00  0.00              
ATOM     42  CA  PHE    42      29.722  -2.550  26.472  1.00  0.00              
ATOM     43  CA  ASN    43      30.527  -6.129  27.529  1.00  0.00              
ATOM     44  CA  PRO    44      32.190  -8.155  24.808  1.00  0.00              
ATOM     45  CA  GLU    45      29.663 -11.012  25.265  1.00  0.00              
ATOM     46  CA  PHE    46      26.723  -8.673  24.551  1.00  0.00              
ATOM     47  CA  LEU    47      28.425  -7.337  21.413  1.00  0.00              
ATOM     48  CA  LEU    48      29.082 -10.860  20.146  1.00  0.00              
ATOM     49  CA  ASN    49      25.428 -11.788  20.793  1.00  0.00              
ATOM     50  CA  ILE    50      24.233  -8.661  18.936  1.00  0.00              
ATOM     51  CA  VAL    51      26.573  -9.291  15.961  1.00  0.00              
ATOM     52  CA  ASP    52      25.496 -12.942  15.769  1.00  0.00              
ATOM     53  CA  ARG    53      21.853 -11.797  15.843  1.00  0.00              
ATOM     54  CA  VAL    54      22.186  -9.186  13.085  1.00  0.00              
ATOM     55  CA  ASP    55      18.880  -9.141  11.290  1.00  0.00              
ATOM     56  CA  TRP    56      19.915  -8.941   7.700  1.00  0.00              
ATOM     57  CA  PRO    57      16.645  -7.418   6.382  1.00  0.00              
ATOM     58  CA  ALA    58      17.037  -4.460   8.740  1.00  0.00              
ATOM     59  CA  VAL    59      20.720  -4.109   7.777  1.00  0.00              
ATOM     60  CA  LEU    60      19.770  -3.990   4.118  1.00  0.00              
ATOM     61  CA  THR    61      17.152  -1.333   4.754  1.00  0.00              
ATOM     62  CA  VAL    62      19.630   0.827   6.778  1.00  0.00              
ATOM     63  CA  ALA    63      22.252   0.528   4.086  1.00  0.00              
ATOM     64  CA  ALA    64      19.799   1.525   1.369  1.00  0.00              
ATOM     65  CA  GLU    65      18.742   4.559   3.345  1.00  0.00              
ATOM     66  CA  LEU    66      22.343   5.693   3.765  1.00  0.00              
ATOM     67  CA  GLY    67      23.168   5.308   0.051  1.00  0.00              
ATOM     68  CA  ASN    68      26.089   2.925   0.256  1.00  0.00              
ATOM     69  CA  ASN    69      26.301   1.411  -3.171  1.00  0.00              
ATOM     70  CA  ALA    70      29.303  -0.732  -2.121  1.00  0.00              
ATOM     71  CA  LEU    71      27.329  -2.927   0.312  1.00  0.00              
ATOM     72  CA  PRO    72      26.959  -6.363  -1.320  1.00  0.00              
ATOM     73  CA  PRO    73      23.419  -7.207  -2.267  1.00  0.00              
ATOM     74  CA  THR    74      22.734 -10.031   0.108  1.00  0.00              
ATOM     75  CA  LYS    75      25.223  -9.911   2.946  1.00  0.00              
ATOM     76  CA  PRO    76      27.412 -13.018   2.385  1.00  0.00              
ATOM     77  CA  SER    77      27.156 -14.949   5.618  1.00  0.00              
ATOM     78  CA  PHE    78      23.375 -14.887   5.860  1.00  0.00              
ATOM     79  CA  PRO    79      21.317 -18.091   5.567  1.00  0.00              
ATOM     80  CA  SER    80      19.095 -17.222   2.582  1.00  0.00              
ATOM     81  CA  SER    81      15.883 -17.059   4.471  1.00  0.00              
ATOM     82  CA  ILE    82      16.269 -18.152   8.113  1.00  0.00              
ATOM     83  CA  GLN    83      13.122 -20.288   7.622  1.00  0.00              
ATOM     84  CA  GLU    84      14.768 -22.473   4.986  1.00  0.00              
ATOM     85  CA  LEU    85      17.609 -23.698   7.258  1.00  0.00              
ATOM     86  CA  THR    86      15.213 -24.567   9.907  1.00  0.00              
ATOM     87  CA  ASP    87      16.266 -25.286  13.350  1.00  0.00              
ATOM     88  CA  ASP    88      19.094 -22.871  14.237  1.00  0.00              
ATOM     89  CA  ASP    89      17.204 -20.115  12.367  1.00  0.00              
ATOM     90  CA  MET    90      14.144 -20.492  14.525  1.00  0.00              
ATOM     91  CA  ALA    91      16.147 -20.154  17.781  1.00  0.00              
ATOM     92  CA  ILE    92      17.926 -17.054  16.648  1.00  0.00              
ATOM     93  CA  LEU    93      14.610 -15.507  15.602  1.00  0.00              
ATOM     94  CA  ASN    94      13.007 -16.117  18.981  1.00  0.00              
ATOM     95  CA  ASP    95      15.971 -14.539  20.766  1.00  0.00              
ATOM     96  CA  LEU    96      15.766 -11.563  18.421  1.00  0.00              
ATOM     97  CA  HIS    97      12.018 -11.223  19.075  1.00  0.00              
ATOM     98  CA  THR    98      12.751 -11.151  22.826  1.00  0.00              
ATOM     99  CA  LEU    99      15.443  -8.493  22.335  1.00  0.00              
ATOM    100  CA  LEU   100      13.094  -6.302  20.247  1.00  0.00              
ATOM    101  CA  LEU   101      10.327  -6.506  22.827  1.00  0.00              
ATOM    102  CA  GLN   102      12.640  -5.556  25.691  1.00  0.00              
ATOM    103  CA  THR   103      13.791  -2.535  23.680  1.00  0.00              
ATOM    104  CA  SER   104      11.039  -0.753  21.855  1.00  0.00              
ATOM    105  CA  ILE   105      11.986   1.208  18.788  1.00  0.00              
ATOM    106  CA  ALA   106       9.792   4.042  17.746  1.00  0.00              
ATOM    107  CA  GLU   107      10.725   6.312  14.879  1.00  0.00              
ATOM    108  CA  GLY   108      14.248   7.191  15.984  1.00  0.00              
ATOM    109  CA  GLU   109      13.386   6.878  19.673  1.00  0.00              
ATOM    110  CA  MET   110      14.666   4.113  21.663  1.00  0.00              
ATOM    111  CA  LYS   111      12.808   2.834  24.647  1.00  0.00              
ATOM    112  CA  CYS   112      14.192   0.195  26.933  1.00  0.00              
ATOM    113  CA  ARG   113      11.619  -2.346  28.153  1.00  0.00              
ATOM    114  CA  ASN   114      13.568  -3.330  31.291  1.00  0.00              
ATOM    115  CA  CYS   115      14.913  -0.127  32.676  1.00  0.00              
ATOM    116  CA  GLY   116      12.689   2.452  31.072  1.00  0.00              
ATOM    117  CA  HIS   117      15.536   4.634  29.892  1.00  0.00              
ATOM    118  CA  ILE   118      14.721   6.739  26.907  1.00  0.00              
ATOM    119  CA  TYR   119      17.297   7.245  24.259  1.00  0.00              
ATOM    120  CA  TYR   120      16.807   9.630  21.368  1.00  0.00              
ATOM    121  CA  ILE   121      18.581   8.789  18.178  1.00  0.00              
ATOM    122  CA  LYS   122      18.815  11.215  15.444  1.00  0.00              
ATOM    123  CA  ASN   123      22.006  10.284  13.523  1.00  0.00              
ATOM    124  CA  GLY   124      21.847   6.483  13.491  1.00  0.00              
ATOM    125  CA  ILE   125      18.173   5.958  12.575  1.00  0.00              
ATOM    126  CA  PRO   126      18.531   3.869   9.405  1.00  0.00              
ATOM    127  CA  ASN   127      21.160   1.787  11.240  1.00  0.00              
ATOM    128  CA  LEU   128      19.259   1.149  14.513  1.00  0.00              
ATOM    129  CA  LEU   129      21.892   1.884  17.104  1.00  0.00              
ATOM    130  CA  LEU   130      21.372  -0.034  20.388  1.00  0.00              
ATOM    131  CA  PRO   131      22.411   1.648  23.598  1.00  0.00              
ATOM    132  CA  PRO   132      24.788  -0.098  25.926  1.00  0.00              
ATOM    133  CA  HIS   133      21.381  -0.279  28.387  1.00  0.00              
ATOM    134  CA  LEU   134      21.605  -3.142  26.066  1.00  0.00              
ATOM    135  CA  VAL   135      20.076  -4.482  22.375  1.00  0.00              
TER                                                                             
END
