
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  157 (  157),  selected  142 , name T0322TS393_4
# Molecule2: number of CA atoms  142 ( 1089),  selected  142 , name T0322.pdb
# PARAMETERS: T0322TS393_4.T0322.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   134        20 - 153         4.99     8.38
  LCS_AVERAGE:     90.78

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    34        83 - 116         1.99     8.95
  LCS_AVERAGE:     15.15

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    18        62 - 79          0.84    13.26
  LONGEST_CONTINUOUS_SEGMENT:    18        85 - 102         0.97     9.67
  LCS_AVERAGE:      6.36

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  142
LCS_GDT     A      12     A      12      4    4   14     3    3    4    5    6    8    9   10   11   11   14   18   18   21   21   22   23   37   39   40 
LCS_GDT     I      13     I      13      4    7   14     3    3    4    4    6    8    9   10   11   12   16   18   18   21   30   31   33   37   44   48 
LCS_GDT     P      14     P      14      5    7   16     3    4    5    6    6    8    8   10   10   12   16   18   19   24   30   32   34   40   44   50 
LCS_GDT     E      15     E      15      5    7   16     3    4    5    6    6    8    8   10   13   15   17   21   27   35   37   43   48   59   60   65 
LCS_GDT     G      16     G      16      5    7   16     3    4    5    6    6    8    8   10   10   11   17   21   28   35   40   43   48   50   56   60 
LCS_GDT     F      17     F      17      5    7   16     3    4    5    6    6    8    8   10   10   11   13   14   16   33   37   43   48   50   55   60 
LCS_GDT     S      18     S      18      5    7  127     3    4    5    6    6    7    8   10   11   12   14   14   30   35   40   46   54   57   68   79 
LCS_GDT     Q      19     Q      19      5    7  129     3    4    5    6    7    8    9   17   22   25   29   32   34   37   51   58   64   71   75   89 
LCS_GDT     L      20     L      20      5    5  134     3    4    4    5    7    8   16   19   20   29   34   44   51   60   72   82   93  104  114  119 
LCS_GDT     N      21     N      21      4    6  134     3    4    4    5    7    8    9   10   11   16   34   70   88  107  115  116  121  124  124  125 
LCS_GDT     W      22     W      22      4    6  134     3    4    4    5    6    8   11   20   32   39   76   95  110  119  121  123  125  126  126  128 
LCS_GDT     S      23     S      23      3   12  134     3   12   32   55   71   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     R      24     R      24      5   12  134     3    3   26   54   66   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     G      25     G      25      5   12  134     5   15   39   54   71   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     F      26     F      26      5   12  134     4    5   17   36   65   81   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     G      27     G      27      5   12  134     4    5   20   42   70   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     R      28     R      28      5   12  134     4   10   31   50   70   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     Q      29     Q      29      5   12  134     4   10   30   50   70   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     I      30     I      30      4   12  134     5   19   40   55   71   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     G      31     G      31      4   12  134     5   19   40   55   71   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     P      32     P      32      3   12  134     3    3    7   22   53   76   91   98  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     L      33     L      33      4   12  134     3    4    8   32   55   78   91   98  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     F      34     F      34      4   12  134     3    5   22   49   67   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     E      35     E      35      4   11  134     3   13   40   54   67   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     H      36     H      36      4   11  134     3   13   32   50   66   82   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     R      37     R      37      4    8  134     3    4    5    8   11   39   47   63   76   86  104  115  118  121  122  124  125  126  126  128 
LCS_GDT     E      38     E      38      4    8  134     3    4    5    7   11   24   38   60   74   86   95  106  114  119  122  124  125  126  126  128 
LCS_GDT     G      39     G      39      5    7  134     3    4    6   14   37   46   54   70   84  101  108  116  119  121  123  124  125  126  126  128 
LCS_GDT     P      40     P      40      5    7  134     3    4   11   22   41   59   76   96  106  112  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     G      41     G      41      5    7  134     3    5    5    6    7   16   25   68   73   91  101  110  116  121  123  124  125  126  126  128 
LCS_GDT     Q      42     Q      42      5   20  134     3    4   10   24   41   58   77   96  106  112  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     A      43     A      43      6   21  134     4   11   23   48   70   82   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     R      44     R      44      6   21  134     4   11   21   44   69   82   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     L      45     L      45      7   21  134     4   12   32   55   71   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     A      46     A      46     10   21  134     4   12   30   55   71   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     F      47     F      47     10   21  134     4   12   32   55   71   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     R      48     R      48     10   21  134     6   11   27   55   71   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     V      49     V      49     10   21  134     6   12   29   55   71   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     E      50     E      50     10   21  134     6   19   40   55   71   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     E      51     E      51     10   21  134     6   17   40   55   71   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     H      52     H      52     10   21  134     6   16   40   55   71   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     H      53     H      53     10   21  134     6   13   39   55   71   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     T      54     T      54     10   24  134     6   19   40   55   71   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     N      55     N      55     10   25  134     3   19   40   55   71   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     G      56     G      56      9   26  134     5    9   15   22   49   71   87   98  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     L      57     L      57      9   26  134     5    7   15   25   59   76   89   98  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     G      58     G      58      9   26  134     5    9   28   54   70   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     N      59     N      59      9   26  134     5   19   40   55   71   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     C      60     C      60      9   26  134     3   19   40   55   71   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     H      61     H      61     16   26  134     5   16   40   55   71   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     G      62     G      62     18   26  134    11   14   40   55   71   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     G      63     G      63     18   26  134    11   14   17   25   55   69   85   98  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     M      64     M      64     18   26  134    11   14   17   21   32   65   87   98  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     L      65     L      65     18   26  134    11   14   24   50   71   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     M      66     M      66     18   26  134    11   14   21   44   71   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     S      67     S      67     18   26  134    11   14   17   38   61   78   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     F      68     F      68     18   26  134    11   14   17   35   61   81   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     A      69     A      69     18   26  134    11   14   17   38   62   82   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     D      70     D      70     18   26  134    11   14   40   54   71   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     M      71     M      71     18   26  134    11   14   22   48   70   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     A      72     A      72     18   26  134     7   14   17   26   42   68   87   98  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     W      73     W      73     18   26  134     7   14   17   26   51   72   87   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     G      74     G      74     18   26  134     5   14   39   55   71   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     R      75     R      75     18   26  134    11   14   17   26   45   74   87   98  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     I      76     I      76     18   26  134     5    6   17   21   30   38   66   85   98  110  114  118  119  121  123  124  125  126  126  128 
LCS_GDT     I      77     I      77     18   26  134     5   13   33   53   68   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     S      78     S      78     18   26  134     5   14   30   55   71   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     L      79     L      79     18   26  134     5   14   17   25   47   73   87   98  108  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     Q      80     Q      80      3   26  134     3    6   15   21   27   33   40   51   85   98  107  113  118  120  123  124  125  126  126  128 
LCS_GDT     K      81     K      81      4   33  134     3    5   18   32   57   78   87   98  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     S      82     S      82      6   33  134     3    5    9   20   41   75   89   98  107  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     Y      83     Y      83      8   34  134     3    8   28   55   71   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     S      84     S      84      8   34  134     3    9   30   55   71   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     W      85     W      85     18   34  134     5   19   40   55   71   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     V      86     V      86     18   34  134     4   19   40   55   71   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     T      87     T      87     18   34  134     5   17   40   55   71   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     V      88     V      88     18   34  134     3   19   40   55   71   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     R      89     R      89     18   34  134     4   16   39   54   71   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     L      90     L      90     18   34  134     4   16   40   55   71   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     M      91     M      91     18   34  134     5   16   40   55   71   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     C      92     C      92     18   34  134     4   13   36   53   71   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     D      93     D      93     18   34  134     4   18   40   55   71   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     F      94     F      94     18   34  134     5   19   40   55   71   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     L      95     L      95     18   34  134     4   18   40   54   71   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     S      96     S      96     18   34  134     4   19   40   55   71   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     G      97     G      97     18   34  134     3   16   40   55   71   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     A      98     A      98     18   34  134     5   19   40   55   71   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     K      99     K      99     18   34  134     3   10   32   54   71   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     L     100     L     100     18   34  134     3   15   40   55   71   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     G     101     G     101     18   34  134     5   19   40   55   71   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     D     102     D     102     18   34  134     4   18   40   55   71   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     W     103     W     103     15   34  134     3   12   37   55   71   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     V     104     V     104     15   34  134     3   10   27   54   71   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     E     105     E     105     15   34  134     2   11   39   55   71   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     G     106     G     106      7   34  134     4   18   40   55   71   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     E     107     E     107      7   34  134     5   19   40   55   71   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     G     108     G     108      7   34  134     3    9   27   51   71   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     E     109     E     109      7   34  134     3   11   32   53   71   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     L     110     L     110      7   34  134     3   16   39   55   71   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     I     111     I     111      7   34  134     4   13   39   55   71   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     S     112     S     112      7   34  134     5   18   40   55   71   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     E     113     E     113      7   34  134     4   19   40   55   71   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     E     114     E     114      7   34  134     4   11   30   50   69   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     D     115     D     115      4   34  134     1    6   15   26   56   79   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     M     116     M     116      4   34  134     3    4    5   13   28   54   88   98  107  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     L     117     L     117      4   23  134     3    6   18   22   37   73   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     F     118     F     118      5   23  134     3    4   14   22   53   81   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     T     119     T     119      5   23  134     3    4   14   20   44   76   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     V     120     V     120      5   21  134     3    4   18   28   64   82   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     R     121     R     121      5   21  134     4   10   18   26   40   58   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     G     122     G     122      5   21  134     4   10   18   24   40   53   74   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     R     123     R     123      4   21  134     4   10   30   55   71   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     I     124     I     124      4   21  134     4    8   19   50   71   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     W     125     W     125      5   21  134     3    8   22   39   71   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     A     126     A     126      5   21  134     3    9   22   39   66   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     G     127     G     127      5   21  134     3   10   22   46   71   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     E     128     E     128      6   21  134     3   15   39   55   71   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     R     129     R     129      6   21  134     4   11   32   55   71   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     T     130     T     130      6   21  134     3   19   40   55   71   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     L     131     L     131      6   21  134     4   18   40   55   71   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     I     132     I     132      6   21  134     3   18   40   55   71   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     T     133     T     133      6   21  134     4   18   40   55   71   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     G     134     G     134      6   21  134     4    8   19   39   70   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     T     135     T     135      6   21  134     3   12   25   54   71   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     G     136     G     136      4   21  134     4   19   40   55   71   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     V     137     V     137      5   21  134     3    6   13   32   57   73   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     F     138     F     138      5   21  134     4   15   40   54   71   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     K     139     K     139      5   21  134     4   15   40   55   71   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     A     140     A     140      5   21  134     4   19   40   55   71   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     L     141     L     141      5   21  134     4   10   32   55   71   83   91   99  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     S     142     S     142      3   10  134     3    9   17   32   49   75   89   98  107  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     A     143     A     143      4   10  134     3    4   10   21   27   40   59   74   93  107  113  117  119  120  123  124  125  126  126  128 
LCS_GDT     R     144     R     144      4    7  134     0    3    4    7    8    8   10   12   24   28   60   75   83  112  116  119  121  124  125  128 
LCS_GDT     K     145     K     145      4    7  134     0    4    6    7    8    8   18   22   24   32   48   58   66   80  101  111  118  123  124  127 
LCS_GDT     P     146     P     146      4    7  134     3    4    4    6    8    8   12   18   22   29   47   56   69   82   96  109  118  120  124  127 
LCS_GDT     R     147     R     147      4    7  134     3    4    6    7    8    8   11   13   15   22   28   34   42   62   64   81   89  101  111  121 
LCS_GDT     P     148     P     148      4    7  134     3    4    6    7    8    8    9   13   17   25   32   41   61   72   81   94  101  111  121  122 
LCS_GDT     G     149     G     149      3    7  134     3    4    6    7    8   11   17   24   37   55   65   86   97  105  113  118  120  123  125  128 
LCS_GDT     E     150     E     150      3    4  134     3    3    9   14   28   56   76   94  106  112  116  117  119  121  123  124  125  126  126  128 
LCS_GDT     L     151     L     151      3    4  134     3    3    4    4   25   56   84   98  109  113  116  118  119  121  123  124  125  126  126  128 
LCS_GDT     A     152     A     152      3    4  134     3    3    4    4    4    5    9   10   45  110  115  118  119  121  123  124  125  126  126  128 
LCS_GDT     Y     153     Y     153      3    4  134     0    3    3    4    4    4   60   94  105  110  116  118  119  121  123  124  125  126  126  128 
LCS_AVERAGE  LCS_A:  37.43  (   6.36   15.15   90.78 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     11     19     40     55     71     83     91     99    109    113    116    118    119    121    123    124    125    126    126    128 
GDT PERCENT_CA   7.75  13.38  28.17  38.73  50.00  58.45  64.08  69.72  76.76  79.58  81.69  83.10  83.80  85.21  86.62  87.32  88.03  88.73  88.73  90.14
GDT RMS_LOCAL    0.22   0.80   1.10   1.49   1.70   1.90   2.07   2.30   2.60   2.74   2.86   2.95   3.00   3.15   3.33   3.39   3.47   3.56   3.56   3.88
GDT RMS_ALL_CA  13.80   9.38   9.55   8.87   8.95   9.01   8.98   8.99   8.88   8.76   8.79   8.80   8.78   8.84   8.72   8.75   8.73   8.77   8.77   8.67

#      Molecule1      Molecule2       DISTANCE
LGA    A      12      A      12         37.749
LGA    I      13      I      13         33.453
LGA    P      14      P      14         33.596
LGA    E      15      E      15         30.200
LGA    G      16      G      16         29.316
LGA    F      17      F      17         27.148
LGA    S      18      S      18         25.062
LGA    Q      19      Q      19         22.350
LGA    L      20      L      20         17.291
LGA    N      21      N      21         13.230
LGA    W      22      W      22          8.727
LGA    S      23      S      23          1.588
LGA    R      24      R      24          3.363
LGA    G      25      G      25          2.426
LGA    F      26      F      26          3.349
LGA    G      27      G      27          2.862
LGA    R      28      R      28          2.897
LGA    Q      29      Q      29          2.858
LGA    I      30      I      30          1.507
LGA    G      31      G      31          1.312
LGA    P      32      P      32          4.403
LGA    L      33      L      33          4.119
LGA    F      34      F      34          3.458
LGA    E      35      E      35          3.306
LGA    H      36      H      36          3.887
LGA    R      37      R      37          8.894
LGA    E      38      E      38          9.820
LGA    G      39      G      39          8.807
LGA    P      40      P      40          7.016
LGA    G      41      G      41          9.943
LGA    Q      42      Q      42          6.519
LGA    A      43      A      43          3.385
LGA    R      44      R      44          3.543
LGA    L      45      L      45          2.669
LGA    A      46      A      46          2.557
LGA    F      47      F      47          2.514
LGA    R      48      R      48          2.340
LGA    V      49      V      49          2.302
LGA    E      50      E      50          1.624
LGA    E      51      E      51          2.042
LGA    H      52      H      52          1.522
LGA    H      53      H      53          0.606
LGA    T      54      T      54          1.028
LGA    N      55      N      55          1.785
LGA    G      56      G      56          5.836
LGA    L      57      L      57          5.275
LGA    G      58      G      58          3.513
LGA    N      59      N      59          2.028
LGA    C      60      C      60          1.578
LGA    H      61      H      61          1.648
LGA    G      62      G      62          1.324
LGA    G      63      G      63          4.847
LGA    M      64      M      64          4.907
LGA    L      65      L      65          2.234
LGA    M      66      M      66          2.289
LGA    S      67      S      67          3.827
LGA    F      68      F      68          3.704
LGA    A      69      A      69          2.809
LGA    D      70      D      70          1.954
LGA    M      71      M      71          3.182
LGA    A      72      A      72          4.840
LGA    W      73      W      73          3.918
LGA    G      74      G      74          1.546
LGA    R      75      R      75          5.065
LGA    I      76      I      76          6.198
LGA    I      77      I      77          2.654
LGA    S      78      S      78          2.639
LGA    L      79      L      79          5.805
LGA    Q      80      Q      80          9.465
LGA    K      81      K      81          4.914
LGA    S      82      S      82          5.367
LGA    Y      83      Y      83          2.670
LGA    S      84      S      84          2.374
LGA    W      85      W      85          0.773
LGA    V      86      V      86          1.120
LGA    T      87      T      87          1.255
LGA    V      88      V      88          1.411
LGA    R      89      R      89          1.913
LGA    L      90      L      90          1.221
LGA    M      91      M      91          1.871
LGA    C      92      C      92          2.307
LGA    D      93      D      93          1.892
LGA    F      94      F      94          1.835
LGA    L      95      L      95          2.412
LGA    S      96      S      96          2.330
LGA    G      97      G      97          1.680
LGA    A      98      A      98          1.443
LGA    K      99      K      99          2.935
LGA    L     100      L     100          2.775
LGA    G     101      G     101          2.552
LGA    D     102      D     102          1.834
LGA    W     103      W     103          1.955
LGA    V     104      V     104          2.334
LGA    E     105      E     105          1.783
LGA    G     106      G     106          1.210
LGA    E     107      E     107          0.671
LGA    G     108      G     108          2.398
LGA    E     109      E     109          2.395
LGA    L     110      L     110          1.775
LGA    I     111      I     111          1.921
LGA    S     112      S     112          1.298
LGA    E     113      E     113          1.680
LGA    E     114      E     114          2.512
LGA    D     115      D     115          3.335
LGA    M     116      M     116          4.536
LGA    L     117      L     117          3.545
LGA    F     118      F     118          3.144
LGA    T     119      T     119          3.479
LGA    V     120      V     120          2.553
LGA    R     121      R     121          3.623
LGA    G     122      G     122          3.885
LGA    R     123      R     123          1.058
LGA    I     124      I     124          2.283
LGA    W     125      W     125          2.428
LGA    A     126      A     126          2.901
LGA    G     127      G     127          2.298
LGA    E     128      E     128          0.426
LGA    R     129      R     129          2.460
LGA    T     130      T     130          1.961
LGA    L     131      L     131          2.208
LGA    I     132      I     132          0.606
LGA    T     133      T     133          0.520
LGA    G     134      G     134          2.269
LGA    T     135      T     135          1.692
LGA    G     136      G     136          1.255
LGA    V     137      V     137          3.559
LGA    F     138      F     138          1.461
LGA    K     139      K     139          1.147
LGA    A     140      A     140          1.241
LGA    L     141      L     141          1.860
LGA    S     142      S     142          5.764
LGA    A     143      A     143          9.305
LGA    R     144      R     144         13.778
LGA    K     145      K     145         16.043
LGA    P     146      P     146         16.375
LGA    R     147      R     147         19.256
LGA    P     148      P     148         18.883
LGA    G     149      G     149         14.314
LGA    E     150      E     150          6.995
LGA    L     151      L     151          5.150
LGA    A     152      A     152          5.624
LGA    Y     153      Y     153          5.105

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  157  142    4.0     99    2.30    52.289    47.770     4.122

LGA_LOCAL      RMSD =  2.302  Number of atoms =   99  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  8.878  Number of atoms =  142 
Std_ALL_ATOMS  RMSD =  7.887  (standard rmsd on all 142 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.021901 * X  +  -0.784771 * Y  +  -0.619399 * Z  +  10.885365
  Y_new =  -0.416601 * X  +  -0.556032 * Y  +   0.719216 * Z  +  -5.138528
  Z_new =  -0.908825 * X  +   0.273794 * Y  +  -0.314759 * Z  + -15.465735 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.425685   -0.715907  [ DEG:   138.9815    -41.0185 ]
  Theta =   1.140460    2.001133  [ DEG:    65.3435    114.6565 ]
  Phi   =  -1.623319    1.518274  [ DEG:   -93.0093     86.9907 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0322TS393_4                                  
REMARK     2: T0322.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0322TS393_4.T0322.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  157  142   4.0   99   2.30  47.770     7.89
REMARK  ---------------------------------------------------------- 
MOLECULE T0322TS393_4
PFRMAT TS
TARGET T0322
MODEL 4
PARENT N/A
ATOM      1  CA  MET     1      41.833  -0.890 -12.310  1.00 25.00           C
ATOM      2  CA  SER     2      41.056   1.534  -9.465  1.00 25.00           C
ATOM      3  CA  ASP     3      39.931   5.043 -10.194  1.00 25.00           C
ATOM      4  CA  ASP     4      37.901   7.442  -7.976  1.00 25.00           C
ATOM      5  CA  LEU     5      34.366   7.483  -6.503  1.00 25.00           C
ATOM      6  CA  THR     6      36.270   6.859  -3.218  1.00 25.00           C
ATOM      7  CA  ASP     7      35.728   3.317  -2.028  1.00 25.00           C
ATOM      8  CA  ALA     8      34.676   0.842   0.700  1.00 25.00           C
ATOM      9  CA  GLN     9      35.419   3.459   3.395  1.00 25.00           C
ATOM     10  CA  THR    10      33.339   6.049   1.489  1.00 25.00           C
ATOM     11  CA  ALA    11      32.312   7.745   4.800  1.00 25.00           C
ATOM     12  CA  ALA    12      30.338   4.506   5.371  1.00 25.00           C
ATOM     13  CA  ILE    13      27.023   4.721   3.638  1.00 25.00           C
ATOM     14  CA  PRO    14      25.735   1.616   5.508  1.00 25.00           C
ATOM     15  CA  GLU    15      23.450  -1.417   5.713  1.00 25.00           C
ATOM     16  CA  GLY    16      21.576  -1.683   9.013  1.00 25.00           C
ATOM     17  CA  PHE    17      18.841   0.848   8.623  1.00 25.00           C
ATOM     18  CA  SER    18      17.433   4.208   7.597  1.00 25.00           C
ATOM     19  CA  GLN    19      16.549   6.399   4.581  1.00 25.00           C
ATOM     20  CA  LEU    20      13.981   5.790   1.817  1.00 25.00           C
ATOM     21  CA  ASN    21      10.955   4.277   3.678  1.00 25.00           C
ATOM     22  CA  TRP    22       9.272   0.897   4.205  1.00 25.00           C
ATOM     23  CA  SER    23      10.934   0.006   0.899  1.00 25.00           C
ATOM     24  CA  ARG    24       8.477  -1.324  -1.652  1.00 25.00           C
ATOM     25  CA  GLY    25       7.233   1.871  -3.335  1.00 25.00           C
ATOM     26  CA  PHE    26       9.164   1.246  -6.536  1.00 25.00           C
ATOM     27  CA  GLY    27       9.979  -1.967  -8.455  1.00 25.00           C
ATOM     28  CA  ARG    28       7.762  -3.983  -6.072  1.00 25.00           C
ATOM     29  CA  GLN    29       4.908  -1.479  -6.568  1.00 25.00           C
ATOM     30  CA  ILE    30       2.970  -4.571  -7.699  1.00 25.00           C
ATOM     31  CA  GLY    31       3.939  -7.741  -5.737  1.00 25.00           C
ATOM     32  CA  PRO    32       6.064  -8.968  -8.690  1.00 25.00           C
ATOM     33  CA  LEU    33       9.551  -8.898 -10.234  1.00 25.00           C
ATOM     34  CA  PHE    34      10.567 -12.443 -11.317  1.00 25.00           C
ATOM     35  CA  GLU    35      11.059 -16.026 -12.493  1.00 25.00           C
ATOM     36  CA  HIS    36      11.721 -17.526 -15.933  1.00 25.00           C
ATOM     37  CA  ARG    37      12.653 -16.013 -19.263  1.00 25.00           C
ATOM     38  CA  GLU    38      13.687 -18.748 -21.633  1.00 25.00           C
ATOM     39  CA  GLY    39      15.970 -17.013 -24.112  1.00 25.00           C
ATOM     40  CA  PRO    40      19.556 -16.553 -23.039  1.00 25.00           C
ATOM     41  CA  GLY    41      18.989 -12.795 -23.614  1.00 25.00           C
ATOM     42  CA  GLN    42      15.840 -12.092 -21.537  1.00 25.00           C
ATOM     43  CA  ALA    43      15.857 -10.925 -17.916  1.00 25.00           C
ATOM     44  CA  ARG    44      12.640 -11.733 -15.998  1.00 25.00           C
ATOM     45  CA  LEU    45       8.949 -10.797 -16.157  1.00 25.00           C
ATOM     46  CA  ALA    46       6.224 -11.542 -13.652  1.00 25.00           C
ATOM     47  CA  PHE    47       2.819 -11.152 -11.891  1.00 25.00           C
ATOM     48  CA  ARG    48       1.010 -11.977  -8.655  1.00 25.00           C
ATOM     49  CA  VAL    49      -2.310 -10.402  -9.652  1.00 25.00           C
ATOM     50  CA  GLU    50      -4.349 -10.769  -6.401  1.00 25.00           C
ATOM     51  CA  GLU    51      -7.747  -9.457  -5.281  1.00 25.00           C
ATOM     52  CA  HIS    52      -5.751  -6.489  -3.910  1.00 25.00           C
ATOM     53  CA  HIS    53      -4.359  -5.778  -7.405  1.00 25.00           C
ATOM     54  CA  THR    54      -7.756  -5.788  -9.079  1.00 25.00           C
ATOM     55  CA  ASN    55     -10.357  -4.186 -11.321  1.00 25.00           C
ATOM     56  CA  GLY    56     -14.040  -3.369 -11.701  1.00 25.00           C
ATOM     57  CA  LEU    57     -14.749  -6.787 -13.154  1.00 25.00           C
ATOM     58  CA  GLY    58     -13.175  -9.625 -11.154  1.00 25.00           C
ATOM     59  CA  ASN    59      -9.923  -9.059 -12.989  1.00 25.00           C
ATOM     60  CA  CYS    60      -6.125  -8.508 -13.310  1.00 25.00           C
ATOM     61  CA  HIS    61      -5.722  -4.755 -13.656  1.00 25.00           C
ATOM     62  CA  GLY    62      -5.496  -5.487 -17.421  1.00 25.00           C
ATOM     63  CA  GLY    63      -3.763  -3.300 -20.044  1.00 25.00           C
ATOM     64  CA  MET    64      -2.242  -1.138 -17.273  1.00 25.00           C
ATOM     65  CA  LEU    65      -0.990  -4.281 -15.476  1.00 25.00           C
ATOM     66  CA  MET    66       0.565  -5.556 -18.734  1.00 25.00           C
ATOM     67  CA  SER    67       2.286  -2.175 -19.263  1.00 25.00           C
ATOM     68  CA  PHE    68       3.645  -2.279 -15.684  1.00 25.00           C
ATOM     69  CA  ALA    69       4.964  -5.828 -16.261  1.00 25.00           C
ATOM     70  CA  ASP    70       6.661  -4.696 -19.504  1.00 25.00           C
ATOM     71  CA  MET    71       8.264  -1.745 -17.663  1.00 25.00           C
ATOM     72  CA  ALA    72       9.524  -4.106 -14.923  1.00 25.00           C
ATOM     73  CA  TRP    73      10.994  -6.442 -17.579  1.00 25.00           C
ATOM     74  CA  GLY    74      12.736  -3.474 -19.260  1.00 25.00           C
ATOM     75  CA  ARG    75      14.173  -2.374 -15.885  1.00 25.00           C
ATOM     76  CA  ILE    76      15.444  -5.928 -15.239  1.00 25.00           C
ATOM     77  CA  ILE    77      17.078  -5.999 -18.702  1.00 25.00           C
ATOM     78  CA  SER    78      18.751  -2.625 -18.008  1.00 25.00           C
ATOM     79  CA  LEU    79      20.049  -3.931 -14.649  1.00 25.00           C
ATOM     80  CA  GLN    80      22.569  -1.052 -15.026  1.00 25.00           C
ATOM     81  CA  LYS    81      25.576  -2.400 -16.859  1.00 25.00           C
ATOM     82  CA  SER    82      24.859  -0.388 -20.041  1.00 25.00           C
ATOM     83  CA  TYR    83      22.160   2.055 -19.058  1.00 25.00           C
ATOM     84  CA  SER    84      19.564   4.137 -17.253  1.00 25.00           C
ATOM     85  CA  TRP    85      16.745   2.290 -19.053  1.00 25.00           C
ATOM     86  CA  VAL    86      13.746   4.300 -20.346  1.00 25.00           C
ATOM     87  CA  THR    87      10.065   3.329 -20.758  1.00 25.00           C
ATOM     88  CA  VAL    88      10.281   4.269 -24.442  1.00 25.00           C
ATOM     89  CA  ARG    89       6.610   3.239 -24.690  1.00 25.00           C
ATOM     90  CA  LEU    90       3.876   0.614 -23.956  1.00 25.00           C
ATOM     91  CA  MET    91       1.107   0.108 -26.539  1.00 25.00           C
ATOM     92  CA  CYS    92      -1.191  -2.270 -24.621  1.00 25.00           C
ATOM     93  CA  ASP    93      -2.753  -4.909 -26.872  1.00 25.00           C
ATOM     94  CA  PHE    94      -5.552  -6.535 -24.876  1.00 25.00           C
ATOM     95  CA  LEU    95      -7.730  -9.446 -25.889  1.00 25.00           C
ATOM     96  CA  SER    96      -9.324 -11.566 -23.224  1.00 25.00           C
ATOM     97  CA  GLY    97      -8.676 -12.460 -19.533  1.00 25.00           C
ATOM     98  CA  ALA    98      -7.188 -13.078 -16.134  1.00 25.00           C
ATOM     99  CA  LYS    99      -9.453 -15.223 -13.964  1.00 25.00           C
ATOM    100  CA  LEU   100      -8.352 -14.621 -10.357  1.00 25.00           C
ATOM    101  CA  GLY   101      -5.763 -17.105  -9.315  1.00 25.00           C
ATOM    102  CA  ASP   102      -3.429 -17.081 -12.287  1.00 25.00           C
ATOM    103  CA  TRP   103       0.172 -15.949 -12.512  1.00 25.00           C
ATOM    104  CA  VAL   104      -0.828 -13.253 -15.050  1.00 25.00           C
ATOM    105  CA  GLU   105       2.632 -13.651 -16.552  1.00 25.00           C
ATOM    106  CA  GLY   106       5.656 -13.475 -18.852  1.00 25.00           C
ATOM    107  CA  GLU   107       8.545 -12.906 -21.173  1.00 25.00           C
ATOM    108  CA  GLY   108      10.508  -9.732 -21.598  1.00 25.00           C
ATOM    109  CA  GLU   109      12.486 -10.194 -24.811  1.00 25.00           C
ATOM    110  CA  LEU   110      15.609  -8.824 -26.490  1.00 25.00           C
ATOM    111  CA  ILE   111      15.355  -8.838 -30.296  1.00 25.00           C
ATOM    112  CA  SER   112      17.202  -6.218 -32.237  1.00 25.00           C
ATOM    113  CA  GLU   113      19.001  -2.893 -32.560  1.00 25.00           C
ATOM    114  CA  GLU   114      18.740  -0.285 -35.367  1.00 25.00           C
ATOM    115  CA  ASP   115      17.916   2.395 -32.732  1.00 25.00           C
ATOM    116  CA  MET   116      15.835   1.096 -29.828  1.00 25.00           C
ATOM    117  CA  LEU   117      15.999  -1.924 -27.527  1.00 25.00           C
ATOM    118  CA  PHE   118      12.867  -3.988 -27.119  1.00 25.00           C
ATOM    119  CA  THR   119      10.953  -6.854 -28.707  1.00 25.00           C
ATOM    120  CA  VAL   120       8.724  -6.531 -25.643  1.00 25.00           C
ATOM    121  CA  ARG   121       6.160  -9.287 -25.192  1.00 25.00           C
ATOM    122  CA  GLY   122       4.568  -9.521 -21.757  1.00 25.00           C
ATOM    123  CA  ARG   123       2.806 -12.714 -22.988  1.00 25.00           C
ATOM    124  CA  ILE   124      -0.078 -13.886 -20.805  1.00 25.00           C
ATOM    125  CA  TRP   125       1.688 -17.208 -20.176  1.00 25.00           C
ATOM    126  CA  ALA   126       0.108 -19.564 -17.671  1.00 25.00           C
ATOM    127  CA  GLY   127      -0.510 -23.298 -18.261  1.00 25.00           C
ATOM    128  CA  GLU   128      -2.785 -22.204 -21.105  1.00 25.00           C
ATOM    129  CA  ARG   129      -2.659 -18.840 -22.856  1.00 25.00           C
ATOM    130  CA  THR   130      -2.931 -15.679 -24.837  1.00 25.00           C
ATOM    131  CA  LEU   131      -4.352 -12.504 -23.331  1.00 25.00           C
ATOM    132  CA  ILE   132      -1.922  -9.630 -23.181  1.00 25.00           C
ATOM    133  CA  THR   133       0.340  -9.669 -26.316  1.00 25.00           C
ATOM    134  CA  GLY   134       2.001  -6.489 -25.147  1.00 25.00           C
ATOM    135  CA  THR   135       4.079  -4.108 -27.160  1.00 25.00           C
ATOM    136  CA  GLY   136       7.203  -1.880 -26.868  1.00 25.00           C
ATOM    137  CA  VAL   137       9.152  -1.037 -23.696  1.00 25.00           C
ATOM    138  CA  PHE   138      12.956  -0.503 -23.516  1.00 25.00           C
ATOM    139  CA  LYS   139      15.548   2.056 -24.455  1.00 25.00           C
ATOM    140  CA  ALA   140      19.186   1.830 -23.544  1.00 25.00           C
ATOM    141  CA  LEU   141      20.502   5.311 -22.577  1.00 25.00           C
ATOM    142  CA  SER   142      21.300   8.997 -22.018  1.00 25.00           C
ATOM    143  CA  ALA   143      23.256  10.707 -19.239  1.00 25.00           C
ATOM    144  CA  ARG   144      25.686  12.052 -21.816  1.00 25.00           C
ATOM    145  CA  LYS   145      26.927   8.735 -23.220  1.00 25.00           C
ATOM    146  CA  PRO   146      28.476   5.420 -24.091  1.00 25.00           C
ATOM    147  CA  ARG   147      28.560   2.054 -25.738  1.00 25.00           C
ATOM    148  CA  PRO   148      28.019  -1.621 -24.950  1.00 25.00           C
ATOM    149  CA  GLY   149      26.283  -4.452 -23.011  1.00 25.00           C
ATOM    150  CA  GLU   150      25.713  -6.706 -20.020  1.00 25.00           C
ATOM    151  CA  LEU   151      22.127  -6.442 -18.750  1.00 25.00           C
ATOM    152  CA  ALA   152      21.697  -8.720 -15.738  1.00 25.00           C
ATOM    153  CA  TYR   153      23.122 -11.893 -14.196  1.00 25.00           C
ATOM    154  CA  LYS   154      26.448 -12.955 -12.830  1.00 25.00           C
ATOM    155  CA  GLU   155      26.690 -13.961  -9.164  1.00 25.00           C
ATOM    156  CA  GLU   156      23.152 -13.124  -7.900  1.00 25.00           C
ATOM    157  CA  ALA   157      22.156  -9.409  -7.950  1.00 25.00           C
TER
END
