
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  157 (  157),  selected  142 , name T0322TS393_1
# Molecule2: number of CA atoms  142 ( 1089),  selected  142 , name T0322.pdb
# PARAMETERS: T0322TS393_1.T0322.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   133        21 - 153         4.87     7.60
  LCS_AVERAGE:     90.69

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    63        43 - 105         1.99     7.83
  LCS_AVERAGE:     26.17

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    20        60 - 79          0.93     7.62
  LCS_AVERAGE:      6.94

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  142
LCS_GDT     A      12     A      12      3    6   14     3    3    4    5    5    7   10   11   12   12   17   20   21   27   28   49   52   57   59   61 
LCS_GDT     I      13     I      13      3    6   14     3    4    4    5    5    7   10   12   13   15   18   34   41   43   45   49   52   57   62   64 
LCS_GDT     P      14     P      14      3    8   18     3    3    3    6    8    9   10   11   12   13   16   17   19   29   33   34   52   55   56   64 
LCS_GDT     E      15     E      15      6    8   18     4    5    6    7    8    9   10   11   12   12   14   22   29   31   33   35   40   58   60   64 
LCS_GDT     G      16     G      16      6    8   18     4    5    6    7    8    9   10   11   12   12   14   15   21   26   26   35   40   64   68   70 
LCS_GDT     F      17     F      17      6    8  128     4    5    6    7    8    9   10   11   12   12   14   15   18   26   26   28   40   42   68   70 
LCS_GDT     S      18     S      18      6    8  129     4    5    6    7    8    9   10   11   13   16   34   40   51   68   71   78   92  107  117  119 
LCS_GDT     Q      19     Q      19      6    8  129     3    5    6    7    8    9   10   11   12   12   14   15   16   29   33   54   68   75   91   99 
LCS_GDT     L      20     L      20      6    8  129     3    4    6    7    8    9   10   11   12   12   14   17   19   19   27   31   35   39   43  108 
LCS_GDT     N      21     N      21      4    8  133     3    4    4    7    8    9   10   11   18   39   43   55   98  109  116  119  122  124  126  127 
LCS_GDT     W      22     W      22      4    8  133     3    4    4    5    8    9   10   11   12   39   74   97  106  115  119  122  125  125  126  128 
LCS_GDT     S      23     S      23      4    6  133     3   16   38   62   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     R      24     R      24      4    6  133     2   10   33   56   70   83   91   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     G      25     G      25      4    6  133     3    4    7   20   33   48   67   82   96  103  111  114  118  120  123  124  125  125  126  128 
LCS_GDT     F      26     F      26      4    5  133     4    4    5   14   33   48   62   81   96  104  110  114  118  120  123  124  125  125  126  128 
LCS_GDT     G      27     G      27      4    5  133     4   18   42   62   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     R      28     R      28      4   11  133     4    4    8   30   62   85   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     Q      29     Q      29      4   11  133     4    6   17   37   54   75   89   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     I      30     I      30      4   11  133     3   10   17   26   49   71   89   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     G      31     G      31      5   11  133     3    6   15   37   57   75   89   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     P      32     P      32      5   11  133     3    5    5    8    9   29   36   83   99  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     L      33     L      33      5   11  133     3    5   17   26   54   75   89   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     F      34     F      34      5   11  133     3    5   14   40   59   75   89   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     E      35     E      35      5   11  133     3    8   16   26   49   72   85   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     H      36     H      36      4   11  133     3    4    6    8   43   56   82   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     R      37     R      37      4   11  133     3    4    6    8   14   35   48   65   81   97  108  113  118  120  123  124  125  125  126  128 
LCS_GDT     E      38     E      38      4   11  133     3    4    6    8   13   19   30   47   53   91   99  110  115  119  122  123  124  125  126  128 
LCS_GDT     G      39     G      39      5    8  133     3    4    6   14   24   46   57   76   89  102  109  113  118  120  123  124  125  125  126  128 
LCS_GDT     P      40     P      40      5    8  133     3    4    8   27   39   67   78   90   99  107  111  114  118  120  123  124  125  125  126  128 
LCS_GDT     G      41     G      41      5    6  133     3    4    6    8   16   24   30   57   73   89  103  110  115  119  123  124  125  125  126  128 
LCS_GDT     Q      42     Q      42      5   40  133     3    4    9   24   43   61   75   90  101  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     A      43     A      43     11   63  133     5   19   42   62   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     R      44     R      44     11   63  133     5   21   42   62   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     L      45     L      45     11   63  133     3   18   42   62   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     A      46     A      46     11   63  133     6   21   42   62   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     F      47     F      47     11   63  133     3   12   33   56   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     R      48     R      48     11   63  133     6   17   42   62   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     V      49     V      49     11   63  133     6   19   42   62   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     E      50     E      50     11   63  133     4   21   42   62   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     E      51     E      51     11   63  133     6   21   42   62   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     H      52     H      52     11   63  133     6   21   42   62   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     H      53     H      53     11   63  133     6   21   42   62   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     T      54     T      54      3   63  133     3    3   18   26   55   70   85   94  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     N      55     N      55      4   63  133     3   19   40   62   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     G      56     G      56     15   63  133     4   14   25   51   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     L      57     L      57     15   63  133     3    7   18   31   57   74   90   94  100  107  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     G      58     G      58     19   63  133     5   10   24   47   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     N      59     N      59     19   63  133     5   13   31   56   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     C      60     C      60     20   63  133     5   21   42   62   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     H      61     H      61     20   63  133    13   21   42   62   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     G      62     G      62     20   63  133    13   21   42   62   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     G      63     G      63     20   63  133    13   21   42   62   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     M      64     M      64     20   63  133    13   21   42   62   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     L      65     L      65     20   63  133    13   19   42   62   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     M      66     M      66     20   63  133    13   21   42   62   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     S      67     S      67     20   63  133    13   21   42   62   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     F      68     F      68     20   63  133    13   19   42   62   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     A      69     A      69     20   63  133    13   19   40   62   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     D      70     D      70     20   63  133    13   21   42   62   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     M      71     M      71     20   63  133    13   19   42   62   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     A      72     A      72     20   63  133     5   19   36   56   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     W      73     W      73     20   63  133     5   18   36   56   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     G      74     G      74     20   63  133     5   18   30   56   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     R      75     R      75     20   63  133    13   19   28   54   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     I      76     I      76     20   63  133     5   13   31   56   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     I      77     I      77     20   63  133     5   21   42   62   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     S      78     S      78     20   63  133     8   19   40   59   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     L      79     L      79     20   63  133     8   19   39   57   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     Q      80     Q      80      3   63  133     3    4    9   25   36   56   78   89   94   97  104  108  115  118  123  124  125  125  126  128 
LCS_GDT     K      81     K      81      3   63  133     3   18   28   53   72   85   91   94   99  107  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     S      82     S      82      6   63  133     3    5    6   12   21   45   76   93   98  105  111  114  118  120  123  124  125  125  126  128 
LCS_GDT     Y      83     Y      83      6   63  133     9   19   33   55   74   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     S      84     S      84     19   63  133     5   21   42   62   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     W      85     W      85     19   63  133     6   21   42   62   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     V      86     V      86     19   63  133     3   21   42   62   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     T      87     T      87     19   63  133     3   17   39   62   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     V      88     V      88     19   63  133     3   14   39   62   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     R      89     R      89     19   63  133     7   21   42   62   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     L      90     L      90     19   63  133     4   19   42   62   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     M      91     M      91     19   63  133     4   17   42   62   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     C      92     C      92     19   63  133     5   19   42   62   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     D      93     D      93     19   63  133     5   21   42   62   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     F      94     F      94     19   63  133     4   18   42   62   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     L      95     L      95     19   63  133     4   18   42   62   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     S      96     S      96     19   63  133     4   19   42   62   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     G      97     G      97     19   63  133     5   21   42   62   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     A      98     A      98     19   63  133     5   17   42   62   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     K      99     K      99     19   63  133     5   21   42   62   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     L     100     L     100     19   63  133     4   17   40   62   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     G     101     G     101     19   63  133     5   17   40   62   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     D     102     D     102     19   63  133     5   17   39   62   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     W     103     W     103     15   63  133     3    3   27   60   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     V     104     V     104     15   63  133     6   21   42   62   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     E     105     E     105      8   63  133     4   13   31   62   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     G     106     G     106      8   50  133     4   13   34   62   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     E     107     E     107      8   50  133     4   12   35   62   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     G     108     G     108      8   50  133     4   13   38   62   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     E     109     E     109      8   33  133     4   13   34   62   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     L     110     L     110      8   33  133     4   12   30   58   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     I     111     I     111      8   33  133     4   12   31   58   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     S     112     S     112      8   33  133     3   12   34   61   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     E     113     E     113      5   33  133     3    8   12   39   63   81   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     E     114     E     114      5   33  133     2    5   13   31   55   81   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     D     115     D     115      4   33  133     1    4   15   32   55   79   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     M     116     M     116      4   33  133     1    4    7   15   47   76   86   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     L     117     L     117      5   22  133     0    4    5   15   28   48   80   95  102  107  112  114  117  120  123  124  125  125  126  128 
LCS_GDT     F     118     F     118      5   21  133     3    8    9   12   28   54   73   95  102  107  112  114  117  120  123  124  125  125  126  128 
LCS_GDT     T     119     T     119      5   21  133     3    9   21   50   74   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     V     120     V     120      5   21  133     3    8   21   41   74   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     R     121     R     121      5   21  133     3   11   27   56   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     G     122     G     122      5   21  133     3    7   22   52   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     R     123     R     123      4   21  133     3    8   21   44   69   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     I     124     I     124      4   21  133     4   11   34   62   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     W     125     W     125      4   21  133     3   11   34   62   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     A     126     A     126      4   21  133     3    5   19   48   73   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     G     127     G     127      5   21  133     3   10   22   52   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     E     128     E     128      5   21  133     3   12   36   62   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     R     129     R     129      5   21  133     5   21   42   62   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     T     130     T     130      5   21  133     5   21   42   62   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     L     131     L     131      5   21  133     5   14   41   62   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     I     132     I     132      5   21  133     3   12   36   62   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     T     133     T     133      5   21  133     3   10   27   56   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     G     134     G     134      4   21  133     4   11   31   60   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     T     135     T     135      6   21  133     3    6   11   15   27   52   78   93   99  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     G     136     G     136      6   21  133     3   17   42   62   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     V     137     V     137      6   21  133     3    9   28   51   72   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     F     138     F     138      6   21  133     3   18   40   62   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     K     139     K     139      6   21  133     3   14   29   61   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     A     140     A     140      6   17  133    13   21   42   62   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     L     141     L     141      4   13  133     7   19   42   62   75   89   92   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     S     142     S     142      3   11  133     1    4   12   15   33   56   80   92   98  105  110  114  116  120  123  124  125  125  126  128 
LCS_GDT     A     143     A     143      4   11  133     3    6   12   15   18   24   52   68   91   99  105  110  114  118  122  124  125  125  126  128 
LCS_GDT     R     144     R     144      4    7  133     3    4    5    7    7    9   16   22   27   42   69   75  100  108  115  119  120  123  126  128 
LCS_GDT     K     145     K     145      4    7  133     3    4    5    7    7    9    9   11   16   30   34   43   54   75   86   98  107  119  123  126 
LCS_GDT     P     146     P     146      4    7  133     3    4    5    7    7    9   11   16   24   35   49   68   78   91  102  110  117  121  125  127 
LCS_GDT     R     147     R     147      4    7  133     3    4    5    7    7    9    9   12   14   19   24   31   42   53   61   72   87   96  104  116 
LCS_GDT     P     148     P     148      4    7  133     3    4    5    7    7    9    9   11   15   20   32   45   54   73   83   91  100  109  118  122 
LCS_GDT     G     149     G     149      4    7  133     3    4    5    7    7    9   13   21   31   51   64   77   85  100  109  114  117  121  125  128 
LCS_GDT     E     150     E     150      4    5  133     3    4    6   12   23   41   70   84   98  105  110  114  118  120  123  124  125  125  126  128 
LCS_GDT     L     151     L     151      4    5  133     3    4    8   10   28   46   73   90  100  108  112  114  118  120  123  124  125  125  126  128 
LCS_GDT     A     152     A     152      4    5  133     3    4    5    5    6    7    9   10   11  102  110  113  118  120  123  124  125  125  126  128 
LCS_GDT     Y     153     Y     153      3    5  133     0    3    4    6   43   70   82   95  102  108  112  114  118  120  123  124  125  125  126  128 
LCS_AVERAGE  LCS_A:  41.26  (   6.94   26.17   90.69 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     13     21     42     62     75     89     92     95    102    108    112    114    118    120    123    124    125    125    126    128 
GDT PERCENT_CA   9.15  14.79  29.58  43.66  52.82  62.68  64.79  66.90  71.83  76.06  78.87  80.28  83.10  84.51  86.62  87.32  88.03  88.03  88.73  90.14
GDT RMS_LOCAL    0.24   0.72   1.08   1.41   1.64   1.90   2.00   2.13   2.44   2.66   2.79   2.90   3.21   3.27   3.46   3.54   3.62   3.62   3.71   4.02
GDT RMS_ALL_CA   7.97   7.77   7.75   7.81   7.81   7.80   7.77   7.80   7.93   7.91   7.92   7.86   7.99   7.91   7.92   7.87   7.85   7.85   7.89   7.79

#      Molecule1      Molecule2       DISTANCE
LGA    A      12      A      12         31.371
LGA    I      13      I      13         27.440
LGA    P      14      P      14         28.803
LGA    E      15      E      15         28.048
LGA    G      16      G      16         24.084
LGA    F      17      F      17         23.054
LGA    S      18      S      18         17.551
LGA    Q      19      Q      19         18.312
LGA    L      20      L      20         15.989
LGA    N      21      N      21         10.114
LGA    W      22      W      22          8.765
LGA    S      23      S      23          2.252
LGA    R      24      R      24          2.448
LGA    G      25      G      25          7.694
LGA    F      26      F      26          7.397
LGA    G      27      G      27          1.323
LGA    R      28      R      28          3.247
LGA    Q      29      Q      29          4.816
LGA    I      30      I      30          4.771
LGA    G      31      G      31          3.999
LGA    P      32      P      32          5.518
LGA    L      33      L      33          4.095
LGA    F      34      F      34          3.753
LGA    E      35      E      35          4.807
LGA    H      36      H      36          5.235
LGA    R      37      R      37          8.142
LGA    E      38      E      38         10.307
LGA    G      39      G      39          8.513
LGA    P      40      P      40          6.132
LGA    G      41      G      41          8.689
LGA    Q      42      Q      42          5.360
LGA    A      43      A      43          1.858
LGA    R      44      R      44          1.073
LGA    L      45      L      45          1.912
LGA    A      46      A      46          1.369
LGA    F      47      F      47          2.539
LGA    R      48      R      48          1.954
LGA    V      49      V      49          1.594
LGA    E      50      E      50          1.156
LGA    E      51      E      51          1.422
LGA    H      52      H      52          0.826
LGA    H      53      H      53          1.390
LGA    T      54      T      54          4.595
LGA    N      55      N      55          1.256
LGA    G      56      G      56          3.906
LGA    L      57      L      57          4.960
LGA    G      58      G      58          3.381
LGA    N      59      N      59          2.689
LGA    C      60      C      60          1.489
LGA    H      61      H      61          0.735
LGA    G      62      G      62          1.188
LGA    G      63      G      63          1.361
LGA    M      64      M      64          1.098
LGA    L      65      L      65          1.163
LGA    M      66      M      66          0.912
LGA    S      67      S      67          0.836
LGA    F      68      F      68          1.662
LGA    A      69      A      69          1.717
LGA    D      70      D      70          0.752
LGA    M      71      M      71          2.117
LGA    A      72      A      72          3.008
LGA    W      73      W      73          3.225
LGA    G      74      G      74          3.415
LGA    R      75      R      75          3.944
LGA    I      76      I      76          3.382
LGA    I      77      I      77          1.641
LGA    S      78      S      78          2.983
LGA    L      79      L      79          3.425
LGA    Q      80      Q      80          7.918
LGA    K      81      K      81          5.108
LGA    S      82      S      82          6.784
LGA    Y      83      Y      83          3.691
LGA    S      84      S      84          1.818
LGA    W      85      W      85          0.475
LGA    V      86      V      86          0.596
LGA    T      87      T      87          1.578
LGA    V      88      V      88          1.354
LGA    R      89      R      89          0.615
LGA    L      90      L      90          1.585
LGA    M      91      M      91          1.643
LGA    C      92      C      92          1.022
LGA    D      93      D      93          0.452
LGA    F      94      F      94          1.375
LGA    L      95      L      95          1.428
LGA    S      96      S      96          1.291
LGA    G      97      G      97          1.316
LGA    A      98      A      98          1.237
LGA    K      99      K      99          1.065
LGA    L     100      L     100          1.817
LGA    G     101      G     101          1.826
LGA    D     102      D     102          1.858
LGA    W     103      W     103          2.234
LGA    V     104      V     104          0.891
LGA    E     105      E     105          1.843
LGA    G     106      G     106          1.881
LGA    E     107      E     107          1.402
LGA    G     108      G     108          1.676
LGA    E     109      E     109          2.075
LGA    L     110      L     110          2.723
LGA    I     111      I     111          2.848
LGA    S     112      S     112          2.125
LGA    E     113      E     113          3.318
LGA    E     114      E     114          3.947
LGA    D     115      D     115          4.292
LGA    M     116      M     116          4.618
LGA    L     117      L     117          5.305
LGA    F     118      F     118          5.256
LGA    T     119      T     119          3.060
LGA    V     120      V     120          3.083
LGA    R     121      R     121          2.481
LGA    G     122      G     122          2.717
LGA    R     123      R     123          3.429
LGA    I     124      I     124          1.699
LGA    W     125      W     125          1.731
LGA    A     126      A     126          2.783
LGA    G     127      G     127          2.819
LGA    E     128      E     128          1.691
LGA    R     129      R     129          1.772
LGA    T     130      T     130          1.707
LGA    L     131      L     131          1.762
LGA    I     132      I     132          1.790
LGA    T     133      T     133          2.312
LGA    G     134      G     134          2.280
LGA    T     135      T     135          5.144
LGA    G     136      G     136          1.093
LGA    V     137      V     137          3.098
LGA    F     138      F     138          1.357
LGA    K     139      K     139          1.978
LGA    A     140      A     140          1.647
LGA    L     141      L     141          2.187
LGA    S     142      S     142          7.697
LGA    A     143      A     143          9.530
LGA    R     144      R     144         13.052
LGA    K     145      K     145         16.778
LGA    P     146      P     146         15.542
LGA    R     147      R     147         19.297
LGA    P     148      P     148         18.560
LGA    G     149      G     149         14.417
LGA    E     150      E     150          7.149
LGA    L     151      L     151          5.459
LGA    A     152      A     152          6.912
LGA    Y     153      Y     153          5.046

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  157  142    4.0     95    2.13    53.169    50.775     4.270

LGA_LOCAL      RMSD =  2.125  Number of atoms =   95  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  7.901  Number of atoms =  142 
Std_ALL_ATOMS  RMSD =  7.223  (standard rmsd on all 142 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.631758 * X  +  -0.661828 * Y  +   0.403567 * Z  +  10.468146
  Y_new =  -0.766019 * X  +   0.612766 * Y  +  -0.194249 * Z  +  -6.243786
  Z_new =  -0.118733 * X  +  -0.431859 * Y  +  -0.894092 * Z  + -14.643871 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -2.691626    0.449966  [ DEG:  -154.2188     25.7812 ]
  Theta =   0.119014    3.022579  [ DEG:     6.8190    173.1810 ]
  Phi   =  -2.260435    0.881158  [ DEG:  -129.5134     50.4866 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0322TS393_1                                  
REMARK     2: T0322.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0322TS393_1.T0322.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  157  142   4.0   95   2.13  50.775     7.22
REMARK  ---------------------------------------------------------- 
MOLECULE T0322TS393_1
PFRMAT TS
TARGET T0322
MODEL 1
PARENT N/A
ATOM      1  CA  MET     1      32.101  12.118  -4.953  1.00 25.00           C
ATOM      2  CA  SER     2      31.903  10.215  -1.626  1.00 25.00           C
ATOM      3  CA  ASP     3      32.379   6.740  -3.164  1.00 25.00           C
ATOM      4  CA  ASP     4      35.253   4.317  -2.346  1.00 25.00           C
ATOM      5  CA  LEU     5      32.607   1.624  -2.428  1.00 25.00           C
ATOM      6  CA  THR     6      34.254  -0.094   0.612  1.00 25.00           C
ATOM      7  CA  ASP     7      35.953  -1.015   3.925  1.00 25.00           C
ATOM      8  CA  ALA     8      33.861   1.862   5.343  1.00 25.00           C
ATOM      9  CA  GLN     9      30.684  -0.250   5.009  1.00 25.00           C
ATOM     10  CA  THR    10      32.401  -3.163   6.808  1.00 25.00           C
ATOM     11  CA  ALA    11      34.289  -5.664   4.753  1.00 25.00           C
ATOM     12  CA  ALA    12      31.542  -8.162   5.760  1.00 25.00           C
ATOM     13  CA  ILE    13      27.941  -6.952   5.578  1.00 25.00           C
ATOM     14  CA  PRO    14      26.295  -9.340   8.040  1.00 25.00           C
ATOM     15  CA  GLU    15      23.581  -9.534  10.617  1.00 25.00           C
ATOM     16  CA  GLY    16      20.283 -11.195   9.782  1.00 25.00           C
ATOM     17  CA  PHE    17      18.753  -7.688   9.971  1.00 25.00           C
ATOM     18  CA  SER    18      17.240  -5.692   7.084  1.00 25.00           C
ATOM     19  CA  GLN    19      16.316  -2.672   9.306  1.00 25.00           C
ATOM     20  CA  LEU    20      12.593  -3.463   9.074  1.00 25.00           C
ATOM     21  CA  ASN    21      12.059  -1.765   5.711  1.00 25.00           C
ATOM     22  CA  TRP    22      10.464   1.340   4.253  1.00 25.00           C
ATOM     23  CA  SER    23      12.081   0.902   0.821  1.00 25.00           C
ATOM     24  CA  ARG    24      10.941  -0.224  -2.613  1.00 25.00           C
ATOM     25  CA  GLY    25      10.520  -4.021  -2.708  1.00 25.00           C
ATOM     26  CA  PHE    26       9.709  -4.697  -6.412  1.00 25.00           C
ATOM     27  CA  GLY    27       8.023  -1.301  -6.954  1.00 25.00           C
ATOM     28  CA  ARG    28       4.574  -2.950  -6.726  1.00 25.00           C
ATOM     29  CA  GLN    29       5.597  -4.696  -3.475  1.00 25.00           C
ATOM     30  CA  ILE    30       3.183  -7.420  -4.696  1.00 25.00           C
ATOM     31  CA  GLY    31       5.336 -10.093  -6.359  1.00 25.00           C
ATOM     32  CA  PRO    32       8.156  -8.961  -8.712  1.00 25.00           C
ATOM     33  CA  LEU    33       9.489 -12.453  -8.002  1.00 25.00           C
ATOM     34  CA  PHE    34      10.924 -14.078 -11.138  1.00 25.00           C
ATOM     35  CA  GLU    35      10.273 -17.492 -12.611  1.00 25.00           C
ATOM     36  CA  HIS    36      10.024 -18.747 -16.151  1.00 25.00           C
ATOM     37  CA  ARG    37      12.616 -17.471 -18.604  1.00 25.00           C
ATOM     38  CA  GLU    38      13.389 -18.917 -21.999  1.00 25.00           C
ATOM     39  CA  GLY    39      16.366 -18.252 -24.338  1.00 25.00           C
ATOM     40  CA  PRO    40      19.014 -16.663 -22.057  1.00 25.00           C
ATOM     41  CA  GLY    41      17.808 -13.159 -22.918  1.00 25.00           C
ATOM     42  CA  GLN    42      14.557 -13.281 -20.891  1.00 25.00           C
ATOM     43  CA  ALA    43      13.485 -11.831 -17.534  1.00 25.00           C
ATOM     44  CA  ARG    44      10.354 -13.421 -16.146  1.00 25.00           C
ATOM     45  CA  LEU    45       8.406 -10.530 -14.504  1.00 25.00           C
ATOM     46  CA  ALA    46       6.237 -12.380 -11.995  1.00 25.00           C
ATOM     47  CA  PHE    47       3.007 -10.474 -11.334  1.00 25.00           C
ATOM     48  CA  ARG    48       0.833 -12.479  -8.862  1.00 25.00           C
ATOM     49  CA  VAL    49      -2.667 -11.087  -9.442  1.00 25.00           C
ATOM     50  CA  GLU    50      -3.801 -11.081  -5.829  1.00 25.00           C
ATOM     51  CA  GLU    51      -6.454  -8.493  -5.038  1.00 25.00           C
ATOM     52  CA  HIS    52      -4.889  -4.998  -4.990  1.00 25.00           C
ATOM     53  CA  HIS    53      -4.370  -5.151  -8.781  1.00 25.00           C
ATOM     54  CA  THR    54      -6.776  -2.222  -8.707  1.00 25.00           C
ATOM     55  CA  ASN    55      -9.849  -4.267  -9.525  1.00 25.00           C
ATOM     56  CA  GLY    56     -13.624  -3.838  -9.857  1.00 25.00           C
ATOM     57  CA  LEU    57     -14.672  -6.191 -12.618  1.00 25.00           C
ATOM     58  CA  GLY    58     -12.726  -8.886 -10.671  1.00 25.00           C
ATOM     59  CA  ASN    59     -10.708  -9.205 -13.864  1.00 25.00           C
ATOM     60  CA  CYS    60      -6.892  -9.004 -13.467  1.00 25.00           C
ATOM     61  CA  HIS    61      -6.733  -5.167 -13.646  1.00 25.00           C
ATOM     62  CA  GLY    62      -5.307  -5.319 -17.135  1.00 25.00           C
ATOM     63  CA  GLY    63      -3.687  -1.863 -16.811  1.00 25.00           C
ATOM     64  CA  MET    64      -1.849  -2.995 -13.647  1.00 25.00           C
ATOM     65  CA  LEU    65      -0.609  -6.133 -15.460  1.00 25.00           C
ATOM     66  CA  MET    66       0.621  -3.987 -18.383  1.00 25.00           C
ATOM     67  CA  SER    67       2.452  -1.670 -15.945  1.00 25.00           C
ATOM     68  CA  PHE    68       4.085  -4.697 -14.258  1.00 25.00           C
ATOM     69  CA  ALA    69       5.185  -6.038 -17.673  1.00 25.00           C
ATOM     70  CA  ASP    70       6.669  -2.622 -18.564  1.00 25.00           C
ATOM     71  CA  MET    71       8.552  -2.542 -15.231  1.00 25.00           C
ATOM     72  CA  ALA    72       9.912  -6.062 -15.886  1.00 25.00           C
ATOM     73  CA  TRP    73      11.055  -4.994 -19.383  1.00 25.00           C
ATOM     74  CA  GLY    74      12.796  -1.921 -17.902  1.00 25.00           C
ATOM     75  CA  ARG    75      14.547  -4.132 -15.309  1.00 25.00           C
ATOM     76  CA  ILE    76      15.696  -6.512 -18.081  1.00 25.00           C
ATOM     77  CA  ILE    77      17.045  -3.551 -20.101  1.00 25.00           C
ATOM     78  CA  SER    78      18.926  -2.274 -17.018  1.00 25.00           C
ATOM     79  CA  LEU    79      20.422  -5.754 -16.459  1.00 25.00           C
ATOM     80  CA  GLN    80      23.272  -3.702 -14.928  1.00 25.00           C
ATOM     81  CA  LYS    81      24.289  -0.897 -17.234  1.00 25.00           C
ATOM     82  CA  SER    82      24.312   2.097 -19.553  1.00 25.00           C
ATOM     83  CA  TYR    83      20.791   3.287 -18.666  1.00 25.00           C
ATOM     84  CA  SER    84      17.942   3.501 -16.108  1.00 25.00           C
ATOM     85  CA  TRP    85      15.763   2.676 -19.147  1.00 25.00           C
ATOM     86  CA  VAL    86      12.196   3.837 -19.797  1.00 25.00           C
ATOM     87  CA  THR    87       8.625   2.786 -20.658  1.00 25.00           C
ATOM     88  CA  VAL    88       9.625   3.945 -24.202  1.00 25.00           C
ATOM     89  CA  ARG    89       6.843   2.655 -26.480  1.00 25.00           C
ATOM     90  CA  LEU    90       3.444   1.509 -25.157  1.00 25.00           C
ATOM     91  CA  MET    91       0.416  -0.378 -26.475  1.00 25.00           C
ATOM     92  CA  CYS    92      -1.322  -3.515 -25.211  1.00 25.00           C
ATOM     93  CA  ASP    93      -3.669  -6.026 -26.771  1.00 25.00           C
ATOM     94  CA  PHE    94      -5.642  -6.754 -23.653  1.00 25.00           C
ATOM     95  CA  LEU    95      -7.004 -10.136 -24.894  1.00 25.00           C
ATOM     96  CA  SER    96      -8.700 -12.778 -22.821  1.00 25.00           C
ATOM     97  CA  GLY    97      -8.298 -12.616 -19.046  1.00 25.00           C
ATOM     98  CA  ALA    98      -7.779 -13.776 -15.445  1.00 25.00           C
ATOM     99  CA  LYS    99      -9.192 -14.603 -12.086  1.00 25.00           C
ATOM    100  CA  LEU   100      -8.534 -15.217  -8.416  1.00 25.00           C
ATOM    101  CA  GLY   101      -5.592 -17.581  -8.174  1.00 25.00           C
ATOM    102  CA  ASP   102      -4.927 -17.795 -11.944  1.00 25.00           C
ATOM    103  CA  TRP   103      -1.715 -15.784 -12.076  1.00 25.00           C
ATOM    104  CA  VAL   104       0.990 -14.193 -14.225  1.00 25.00           C
ATOM    105  CA  GLU   105       3.657 -16.612 -15.270  1.00 25.00           C
ATOM    106  CA  GLY   106       5.353 -13.696 -16.921  1.00 25.00           C
ATOM    107  CA  GLU   107       7.308 -13.414 -20.170  1.00 25.00           C
ATOM    108  CA  GLY   108       9.685 -11.094 -22.019  1.00 25.00           C
ATOM    109  CA  GLU   109      11.506 -12.851 -24.873  1.00 25.00           C
ATOM    110  CA  LEU   110      14.202 -10.276 -25.254  1.00 25.00           C
ATOM    111  CA  ILE   111      14.130 -10.205 -29.047  1.00 25.00           C
ATOM    112  CA  SER   112      15.079  -7.472 -31.574  1.00 25.00           C
ATOM    113  CA  GLU   113      17.227  -4.957 -33.539  1.00 25.00           C
ATOM    114  CA  GLU   114      17.613  -1.970 -35.859  1.00 25.00           C
ATOM    115  CA  ASP   115      18.397  -0.140 -32.621  1.00 25.00           C
ATOM    116  CA  MET   116      17.504  -1.745 -29.325  1.00 25.00           C
ATOM    117  CA  LEU   117      15.774  -3.350 -26.353  1.00 25.00           C
ATOM    118  CA  PHE   118      13.483  -5.363 -24.082  1.00 25.00           C
ATOM    119  CA  THR   119      11.346  -5.689 -27.195  1.00 25.00           C
ATOM    120  CA  VAL   120       8.459  -7.230 -25.275  1.00 25.00           C
ATOM    121  CA  ARG   121       6.437 -10.110 -26.834  1.00 25.00           C
ATOM    122  CA  GLY   122       4.045 -11.542 -24.248  1.00 25.00           C
ATOM    123  CA  ARG   123       3.040 -10.772 -20.650  1.00 25.00           C
ATOM    124  CA  ILE   124       0.882 -13.608 -19.375  1.00 25.00           C
ATOM    125  CA  TRP   125      -0.228 -17.188 -18.584  1.00 25.00           C
ATOM    126  CA  ALA   126      -0.358 -19.870 -15.889  1.00 25.00           C
ATOM    127  CA  GLY   127      -2.479 -22.988 -15.477  1.00 25.00           C
ATOM    128  CA  GLU   128      -2.901 -22.747 -19.186  1.00 25.00           C
ATOM    129  CA  ARG   129      -3.150 -19.986 -21.771  1.00 25.00           C
ATOM    130  CA  THR   130      -1.527 -17.131 -23.616  1.00 25.00           C
ATOM    131  CA  LEU   131      -3.181 -13.815 -22.515  1.00 25.00           C
ATOM    132  CA  ILE   132      -2.447 -10.244 -21.548  1.00 25.00           C
ATOM    133  CA  THR   133      -0.403  -9.068 -24.461  1.00 25.00           C
ATOM    134  CA  GLY   134       2.613  -6.776 -25.146  1.00 25.00           C
ATOM    135  CA  THR   135       3.399  -3.416 -23.512  1.00 25.00           C
ATOM    136  CA  GLY   136       6.704  -2.357 -25.168  1.00 25.00           C
ATOM    137  CA  VAL   137      10.224  -1.475 -24.180  1.00 25.00           C
ATOM    138  CA  PHE   138      13.453   0.288 -23.412  1.00 25.00           C
ATOM    139  CA  LYS   139      16.196   1.856 -25.602  1.00 25.00           C
ATOM    140  CA  ALA   140      18.526   3.722 -23.231  1.00 25.00           C
ATOM    141  CA  LEU   141      18.829   7.051 -21.415  1.00 25.00           C
ATOM    142  CA  SER   142      19.492  10.781 -21.376  1.00 25.00           C
ATOM    143  CA  ALA   143      22.073  10.751 -18.574  1.00 25.00           C
ATOM    144  CA  ARG   144      24.823  11.957 -20.837  1.00 25.00           C
ATOM    145  CA  LYS   145      24.834   9.501 -23.667  1.00 25.00           C
ATOM    146  CA  PRO   146      26.180   6.021 -22.958  1.00 25.00           C
ATOM    147  CA  ARG   147      26.599   3.341 -25.685  1.00 25.00           C
ATOM    148  CA  PRO   148      26.841   0.035 -23.851  1.00 25.00           C
ATOM    149  CA  GLY   149      25.704  -3.311 -22.421  1.00 25.00           C
ATOM    150  CA  GLU   150      24.976  -6.525 -20.525  1.00 25.00           C
ATOM    151  CA  LEU   151      21.489  -8.000 -20.903  1.00 25.00           C
ATOM    152  CA  ALA   152      21.203 -10.529 -18.149  1.00 25.00           C
ATOM    153  CA  TYR   153      23.687 -11.514 -15.434  1.00 25.00           C
ATOM    154  CA  LYS   154      27.396 -12.516 -15.681  1.00 25.00           C
ATOM    155  CA  GLU   155      27.306 -14.051 -12.249  1.00 25.00           C
ATOM    156  CA  GLU   156      23.917 -14.154 -10.567  1.00 25.00           C
ATOM    157  CA  ALA   157      22.624 -10.859  -9.123  1.00 25.00           C
TER
END
