
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  148 (  148),  selected  148 , name T0333TS168_3-D2
# Molecule2: number of CA atoms  148 ( 1087),  selected  148 , name T0333_D2.pdb
# PARAMETERS: T0333TS168_3-D2.T0333_D2.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   148       212 - 359         4.43     4.43
  LCS_AVERAGE:    100.00

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    30       225 - 254         1.99     6.36
  LCS_AVERAGE:     13.12

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    17       343 - 359         0.84     6.78
  LCS_AVERAGE:      5.76

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  148
LCS_GDT     E     212     E     212      3    7  148     2    9   18   26   37   48   65   84  106  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     V     213     V     213      4    7  148     3    8   21   32   43   57   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     A     214     A     214      4    7  148     3   10   24   32   44   57   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     I     215     I     215      4    7  148     3    9   19   32   43   57   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     T     216     T     216      4    7  148     2   12   19   32   43   57   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     M     217     M     217      4    7  148     0    4    4    9   29   35   67   81  106  117  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     G     218     G     218      4    7  148     0    8   14   25   37   52   70   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     T     219     T     219      4    5  148     1   16   19   21   27   35   43   62   74   98  115  128  135  140  143  144  146  147  148  148 
LCS_GDT     I     220     I     220      4    5  148     1    4    4    6    8    9   12   32   37   49   64   76   98  116  128  141  146  147  148  148 
LCS_GDT     E     221     E     221      3    5  148     0    3    4    5   13   18   22   32   49   56   64   91  108  126  137  142  146  147  148  148 
LCS_GDT     L     222     L     222      3    8  148     3    3    9   24   39   55   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     Q     223     Q     223      4    8  148     3   17   21   27   37   51   73   89  105  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     A     224     A     224      4    8  148     3    3    4    8    9   27   45   63   71   93  110  123  133  138  143  144  146  147  148  148 
LCS_GDT     F     225     F     225      8   30  148     3   17   21   27   44   56   73   89  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     G     226     G     226     14   30  148     5   12   19   31   43   52   72   88  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     I     227     I     227     14   30  148     5   13   22   31   44   57   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     G     228     G     228     14   30  148     5   13   22   31   44   57   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     A     229     A     229     14   30  148     4   10   19   31   44   57   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     V     230     V     230     14   30  148     9   14   24   32   44   57   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     E     231     E     231     14   30  148     9   16   24   32   44   57   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     P     232     P     232     14   30  148     9   15   24   32   44   57   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     I     233     I     233     14   30  148     9   14   24   32   44   57   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     I     234     I     234     14   30  148     9   14   24   32   44   57   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     A     235     A     235     14   30  148     9   14   22   32   44   57   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     A     236     A     236     14   30  148     9   14   22   31   43   57   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     A     237     A     237     14   30  148     9   14   22   31   43   57   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     G     238     G     238     14   30  148     9   14   22   31   43   53   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     E     239     E     239     14   30  148     3   12   22   31   43   56   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     V     240     V     240     11   30  148     3    9   19   30   44   57   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     D     241     D     241      6   30  148     3    8   15   32   39   56   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     A     242     A     242      6   30  148     3    8   15   26   40   56   72   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     D     243     D     243      6   30  148     3    5   12   24   35   49   65   87  106  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     F     244     F     244      6   30  148     3    8   22   31   43   53   69   87  106  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     V     245     V     245      6   30  148     3   11   22   31   43   53   69   87  105  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     L     246     L     246      6   30  148     5   12   20   31   43   56   72   90  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     A     247     A     247      4   30  148     3    6   17   28   39   51   69   82  103  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     L     248     L     248      4   30  148     3    8   10   19   37   49   69   87  103  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     G     249     G     249      7   30  148     3   11   22   31   43   52   64   86  103  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     D     250     D     250      7   30  148     3    8   22   31   43   52   64   82  103  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     L     251     L     251      7   30  148     3    8   21   31   43   52   64   82  103  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     D     252     D     252      7   30  148     3    6   21   31   43   55   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     I     253     I     253      7   30  148     3   11   22   31   44   57   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     S     254     S     254      7   30  148     4   14   22   31   44   57   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     P     255     P     255      7   20  148    11   16   18   27   39   54   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     L     256     L     256      6   20  148    12   16   20   27   39   52   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     G     257     G     257      6   20  148     9   17   21   27   43   54   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     T     258     T     258      6   20  148     4   16   21   27   43   55   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     L     259     L     259      6   20  148     4    6   20   28   43   57   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     P     260     P     260      6   20  148     3   15   20   27   39   56   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     R     261     R     261      6   20  148     3   15   20   27   43   57   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     N     262     N     262      6   20  148     4    6   24   32   44   56   73   91  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     V     263     V     263      6   20  148     4    7   24   32   44   57   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     R     264     R     264      6   20  148     4   13   24   32   44   57   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     A     265     A     265      6   20  148     4   12   22   32   44   57   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     V     266     V     266      6   20  148     3   14   22   31   44   57   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     G     267     G     267      6   20  148     3   10   21   31   44   57   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     W     268     W     268      6   17  148     3    7   12   25   40   57   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     T     269     T     269      4   14  148     3    9   21   28   41   57   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     P     270     P     270      9   16  148     5    7   17   26   37   48   64   80  106  117  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     L     271     L     271      9   16  148     5   13   18   26   37   56   71   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     H     272     H     272      9   16  148     5    9   16   24   34   56   70   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     T     273     T     273      9   16  148     5    9   17   26   37   53   68   88  106  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     L     274     L     274      9   16  148     5    7   18   26   39   56   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     L     275     L     275      9   16  148     5   11   20   28   41   57   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     R     276     R     276      9   16  148     5    9   18   26   37   53   71   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     T     277     T     277      9   16  148     5    9   18   26   37   53   71   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     C     278     C     278      9   16  148     5    9   18   26   39   57   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     T     279     T     279      9   16  148     5    9   18   26   37   52   69   89  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     A     280     A     280      6   16  148     3    6   18   26   37   52   69   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     V     281     V     281      6   16  148     3   14   22   31   43   56   72   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     V     282     V     282      6   16  148     3   14   22   31   43   57   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     H     283     H     283      4   16  148     3    9   22   31   43   53   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     H     284     H     284      4   16  148     3    8   15   31   41   52   71   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     G     285     G     285      4   16  148     3    5   11   26   34   48   55   71   91  104  123  130  135  140  143  144  146  147  148  148 
LCS_GDT     G     286     G     286      4   12  148     3   10   19   27   41   57   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     G     287     G     287      4   12  148     3   10   19   28   44   57   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     G     288     G     288      9   12  148     5    9   10   15   29   43   62   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     T     289     T     289      9   16  148     8    9   19   28   44   57   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     V     290     V     290      9   16  148     8    9   18   27   40   57   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     M     291     M     291      9   16  148     8    9   14   26   37   49   70   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     T     292     T     292      9   16  148     8    9   16   26   41   57   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     A     293     A     293      9   16  148     8    9   18   32   44   57   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     I     294     I     294      9   16  148     8   10   19   27   40   53   72   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     D     295     D     295      9   16  148     8    9   17   26   37   57   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     A     296     A     296      9   16  148     8   13   24   32   44   57   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     G     297     G     297      5   16  148     3    5   12   24   37   56   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     I     298     I     298      6   16  148     3    4   10   23   37   52   69   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     P     299     P     299      6   16  148     3    9   20   29   43   53   72   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     Q     300     Q     300      6   16  148     3   14   22   31   43   52   69   89  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     L     301     L     301      6   16  148     3    8   19   31   41   52   69   86  106  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     L     302     L     302      6   16  148     3    8   18   26   37   48   67   84  103  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     A     303     A     303      6   16  148     3    7   15   24   38   51   69   90  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     P     304     P     304      5   16  148     3    5   11   24   33   48   69   90  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     D     305     D     305      5    9  148     3    4   10   11   27   39   65   79   99  117  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     P     306     P     306      5    9  148     3    4    7   14   20   41   61   75   92  108  116  127  135  140  143  144  146  147  148  148 
LCS_GDT     R     307     R     307      3    8  148     3    3    8   15   33   42   63   82   95  111  122  130  135  140  143  144  146  147  148  148 
LCS_GDT     D     308     D     308      5   13  148     4    5    7   17   33   41   63   75   95  108  122  130  135  140  143  144  146  147  148  148 
LCS_GDT     Q     309     Q     309      5   13  148     4    5   12   20   29   35   63   81   99  113  125  130  135  140  143  144  146  147  148  148 
LCS_GDT     F     310     F     310     10   13  148     4    5    7   19   36   51   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     Q     311     Q     311     10   13  148     4   10   13   20   33   56   69   88  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     H     312     H     312     10   13  148     8   10   10   13   27   35   43   52   56   82  112  127  135  140  143  144  146  147  148  148 
LCS_GDT     T     313     T     313     10   13  148     8   15   19   21   24   30   44   63   80  104  123  130  135  140  143  144  146  147  148  148 
LCS_GDT     A     314     A     314     10   13  148     8   10   17   28   44   57   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     R     315     R     315     10   13  148     8   10   11   20   31   56   68   88  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     E     316     E     316     10   13  148     8   10   10   14   25   41   65   86  105  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     A     317     A     317     10   13  148     8   10   10   14   22   45   73   89  103  118  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     V     318     V     318     10   13  148     8   10   10   10   18   25   47   60   87  112  124  130  135  140  143  144  146  147  148  148 
LCS_GDT     S     319     S     319     10   13  148     8   10   10   21   31   56   70   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     R     320     R     320     10   13  148     8   15   19   21   32   55   73   91  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     R     321     R     321      3   11  148     3    3    4    8   14   17   27   38   56   75  100  127  135  140  143  144  146  147  148  148 
LCS_GDT     G     322     G     322      3    6  148     3    3    4    5    6   18   22   32   57   95  105  116  135  140  143  144  146  147  148  148 
LCS_GDT     I     323     I     323      3    6  148     3    3    3    4    5    9   15   34   44   52   65   78   93  115  122  134  141  146  148  148 
LCS_GDT     G     324     G     324      4    6  148     3    3    4    5   10   15   26   34   46   65   83  108  121  134  142  144  146  147  148  148 
LCS_GDT     L     325     L     325      4    6  148     0    4    4    5    7   12   26   34   44   56   71   89  114  125  136  143  145  147  148  148 
LCS_GDT     V     326     V     326      4    6  148     1    6    9   14   18   32   53   64   88  102  112  128  135  140  143  144  146  147  148  148 
LCS_GDT     S     327     S     327      4    6  148     3    4    7   14   18   28   53   64   88  100  112  128  135  140  143  144  146  147  148  148 
LCS_GDT     T     328     T     328      4    5  148     3    4    8   26   37   48   61   89  103  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     S     329     S     329      4    5  148     3    4    5    5    9   21   28   48   59   78   99  120  133  138  143  144  146  147  148  148 
LCS_GDT     D     330     D     330      4    5  148     3   17   21   30   44   56   73   90  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     K     331     K     331      4    5  148     3    4   21   27   44   56   73   89  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     V     332     V     332      4   28  148     3    4   15   24   28   40   61   80  102  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     D     333     D     333     10   28  148     9   10   15   22   33   56   70   90  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     A     334     A     334     10   28  148     9   10   13   24   37   56   70   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     D     335     D     335     10   28  148     9   10   13   25   36   56   70   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     L     336     L     336     10   28  148     9   13   21   31   42   57   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     L     337     L     337     10   28  148     9   10   18   28   41   57   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     R     338     R     338     10   28  148     9   10   13   25   37   56   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     R     339     R     339     10   28  148     9   10   18   27   41   57   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     L     340     L     340     10   28  148     9   15   18   28   44   57   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     I     341     I     341     10   28  148     9   10   13   22   34   50   68   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     G     342     G     342     10   28  148     3    6   16   27   41   57   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     D     343     D     343     17   28  148     3    8   19   21   37   51   66   83   95  115  124  130  135  139  143  144  146  147  148  148 
LCS_GDT     E     344     E     344     17   28  148    13   17   22   32   44   57   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     S     345     S     345     17   28  148    13   17   24   32   44   57   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     L     346     L     346     17   28  148    13   17   24   32   44   57   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     R     347     R     347     17   28  148    13   17   24   32   44   57   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     T     348     T     348     17   28  148    13   17   24   32   44   57   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     A     349     A     349     17   28  148    13   17   24   32   44   57   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     A     350     A     350     17   28  148    13   17   24   32   44   57   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     R     351     R     351     17   28  148    13   17   24   32   44   57   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     E     352     E     352     17   28  148    13   17   24   32   44   57   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     V     353     V     353     17   28  148    13   17   24   32   44   57   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     R     354     R     354     17   28  148    13   17   24   32   44   57   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     E     355     E     355     17   28  148    13   16   24   32   44   57   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     E     356     E     356     17   28  148    13   17   24   32   44   57   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     M     357     M     357     17   28  148    13   17   24   32   44   57   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     V     358     V     358     17   28  148    13   16   24   32   44   57   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_GDT     A     359     A     359     17   28  148     0    4   16   30   44   57   73   92  107  119  127  130  135  140  143  144  146  147  148  148 
LCS_AVERAGE  LCS_A:  39.62  (   5.76   13.12  100.00 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     13     17     24     32     44     57     73     92    107    119    127    130    135    140    143    144    146    147    148    148 
GDT PERCENT_CA   8.78  11.49  16.22  21.62  29.73  38.51  49.32  62.16  72.30  80.41  85.81  87.84  91.22  94.59  96.62  97.30  98.65  99.32 100.00 100.00
GDT RMS_LOCAL    0.24   0.59   1.02   1.30   1.84   2.19   2.52   2.94   3.18   3.40   3.56   3.63   3.84   4.01   4.10   4.15   4.29   4.36   4.43   4.43
GDT RMS_ALL_CA   6.47   5.71   5.36   5.39   5.12   4.72   4.69   4.47   4.48   4.49   4.48   4.48   4.44   4.45   4.45   4.44   4.43   4.43   4.43   4.43

#      Molecule1      Molecule2       DISTANCE
LGA    E     212      E     212          4.620
LGA    V     213      V     213          2.431
LGA    A     214      A     214          2.637
LGA    I     215      I     215          3.296
LGA    T     216      T     216          3.025
LGA    M     217      M     217          5.144
LGA    G     218      G     218          3.873
LGA    T     219      T     219          6.703
LGA    I     220      I     220         10.470
LGA    E     221      E     221          9.368
LGA    L     222      L     222          3.056
LGA    Q     223      Q     223          4.815
LGA    A     224      A     224          7.430
LGA    F     225      F     225          4.540
LGA    G     226      G     226          4.782
LGA    I     227      I     227          3.096
LGA    G     228      G     228          2.957
LGA    A     229      A     229          3.193
LGA    V     230      V     230          0.863
LGA    E     231      E     231          0.613
LGA    P     232      P     232          0.719
LGA    I     233      I     233          1.394
LGA    I     234      I     234          1.926
LGA    A     235      A     235          2.421
LGA    A     236      A     236          2.707
LGA    A     237      A     237          3.293
LGA    G     238      G     238          3.699
LGA    E     239      E     239          3.411
LGA    V     240      V     240          2.441
LGA    D     241      D     241          4.000
LGA    A     242      A     242          3.953
LGA    D     243      D     243          5.000
LGA    F     244      F     244          4.917
LGA    V     245      V     245          5.135
LGA    L     246      L     246          4.400
LGA    A     247      A     247          5.722
LGA    L     248      L     248          5.326
LGA    G     249      G     249          5.483
LGA    D     250      D     250          5.986
LGA    L     251      L     251          5.308
LGA    D     252      D     252          3.102
LGA    I     253      I     253          1.201
LGA    S     254      S     254          1.007
LGA    P     255      P     255          3.649
LGA    L     256      L     256          3.884
LGA    G     257      G     257          3.391
LGA    T     258      T     258          3.007
LGA    L     259      L     259          2.729
LGA    P     260      P     260          3.497
LGA    R     261      R     261          3.653
LGA    N     262      N     262          4.199
LGA    V     263      V     263          3.232
LGA    R     264      R     264          3.835
LGA    A     265      A     265          3.443
LGA    V     266      V     266          3.308
LGA    G     267      G     267          3.400
LGA    W     268      W     268          2.005
LGA    T     269      T     269          1.227
LGA    P     270      P     270          5.042
LGA    L     271      L     271          3.667
LGA    H     272      H     272          3.937
LGA    T     273      T     273          4.571
LGA    L     274      L     274          3.649
LGA    L     275      L     275          3.046
LGA    R     276      R     276          3.884
LGA    T     277      T     277          3.550
LGA    C     278      C     278          2.626
LGA    T     279      T     279          4.351
LGA    A     280      A     280          3.987
LGA    V     281      V     281          3.483
LGA    V     282      V     282          2.594
LGA    H     283      H     283          3.045
LGA    H     284      H     284          3.309
LGA    G     285      G     285          6.250
LGA    G     286      G     286          1.449
LGA    G     287      G     287          1.338
LGA    G     288      G     288          3.800
LGA    T     289      T     289          1.426
LGA    V     290      V     290          2.337
LGA    M     291      M     291          3.932
LGA    T     292      T     292          1.786
LGA    A     293      A     293          2.181
LGA    I     294      I     294          3.872
LGA    D     295      D     295          2.034
LGA    A     296      A     296          1.755
LGA    G     297      G     297          2.688
LGA    I     298      I     298          3.953
LGA    P     299      P     299          3.439
LGA    Q     300      Q     300          4.390
LGA    L     301      L     301          5.142
LGA    L     302      L     302          5.399
LGA    A     303      A     303          4.304
LGA    P     304      P     304          4.382
LGA    D     305      D     305          5.910
LGA    P     306      P     306          8.098
LGA    R     307      R     307          7.417
LGA    D     308      D     308          7.620
LGA    Q     309      Q     309          6.442
LGA    F     310      F     310          3.962
LGA    Q     311      Q     311          4.807
LGA    H     312      H     312          7.683
LGA    T     313      T     313          5.804
LGA    A     314      A     314          3.178
LGA    R     315      R     315          5.074
LGA    E     316      E     316          4.850
LGA    A     317      A     317          4.910
LGA    V     318      V     318          5.961
LGA    S     319      S     319          4.205
LGA    R     320      R     320          4.077
LGA    R     321      R     321          6.610
LGA    G     322      G     322          7.447
LGA    I     323      I     323         10.687
LGA    G     324      G     324          8.336
LGA    L     325      L     325          9.502
LGA    V     326      V     326          7.036
LGA    S     327      S     327          7.220
LGA    T     328      T     328          4.793
LGA    S     329      S     329          7.314
LGA    D     330      D     330          4.480
LGA    K     331      K     331          4.745
LGA    V     332      V     332          5.145
LGA    D     333      D     333          4.413
LGA    A     334      A     334          3.504
LGA    D     335      D     335          3.531
LGA    L     336      L     336          2.488
LGA    L     337      L     337          1.831
LGA    R     338      R     338          2.656
LGA    R     339      R     339          2.147
LGA    L     340      L     340          2.910
LGA    I     341      I     341          3.874
LGA    G     342      G     342          2.830
LGA    D     343      D     343          6.161
LGA    E     344      E     344          3.827
LGA    S     345      S     345          3.922
LGA    L     346      L     346          3.671
LGA    R     347      R     347          3.182
LGA    T     348      T     348          2.996
LGA    A     349      A     349          3.045
LGA    A     350      A     350          2.913
LGA    R     351      R     351          2.666
LGA    E     352      E     352          2.348
LGA    V     353      V     353          2.398
LGA    R     354      R     354          2.481
LGA    E     355      E     355          2.493
LGA    E     356      E     356          2.335
LGA    M     357      M     357          2.332
LGA    V     358      V     358          3.048
LGA    A     359      A     359          2.376

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  148  148    4.0     92    2.94    48.142    42.525     3.024

LGA_LOCAL      RMSD =  2.942  Number of atoms =   92  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  4.438  Number of atoms =  148 
Std_ALL_ATOMS  RMSD =  4.432  (standard rmsd on all 148 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.702630 * X  +   0.673879 * Y  +  -0.228470 * Z  +  32.320683
  Y_new =   0.699387 * X  +   0.594919 * Y  +  -0.396143 * Z  +  17.469042
  Z_new =  -0.131031 * X  +  -0.438131 * Y  +  -0.889310 * Z  +   8.578162 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -2.683831    0.457761  [ DEG:  -153.7722     26.2278 ]
  Theta =   0.131409    3.010184  [ DEG:     7.5292    172.4708 ]
  Phi   =   2.358508   -0.783085  [ DEG:   135.1326    -44.8674 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0333TS168_3-D2                               
REMARK     2: T0333_D2.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0333TS168_3-D2.T0333_D2.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  148  148   4.0   92   2.94  42.525     4.43
REMARK  ---------------------------------------------------------- 
MOLECULE T0333TS168_3-D2
PFRMAT TS
TARGET T0333
MODEL 3
PARENT N/A
ATOM    212  CA  GLU   212      29.055  10.565 -11.889  1.00 25.00           C
ATOM    213  CA  VAL   213      28.903  11.105  -8.170  1.00 25.00           C
ATOM    214  CA  ALA   214      30.030  11.234  -4.588  1.00 25.00           C
ATOM    215  CA  ILE   215      27.207  13.068  -2.732  1.00 25.00           C
ATOM    216  CA  THR   216      26.766  15.334   0.303  1.00 25.00           C
ATOM    217  CA  MET   217      29.198  12.951   1.999  1.00 25.00           C
ATOM    218  CA  GLY   218      27.985  12.679   5.578  1.00 25.00           C
ATOM    219  CA  THR   219      26.838   9.166   4.654  1.00 25.00           C
ATOM    220  CA  ILE   220      23.163   8.402   4.912  1.00 25.00           C
ATOM    221  CA  GLU   221      19.867  10.128   4.478  1.00 25.00           C
ATOM    222  CA  LEU   222      18.525  13.673   4.263  1.00 25.00           C
ATOM    223  CA  GLN   223      17.052  17.189   4.789  1.00 25.00           C
ATOM    224  CA  ALA   224      17.815  18.452   1.300  1.00 25.00           C
ATOM    225  CA  PHE   225      14.936  20.934   1.002  1.00 25.00           C
ATOM    226  CA  GLY   226      12.212  18.554   2.174  1.00 25.00           C
ATOM    227  CA  ILE   227      13.636  15.218   1.020  1.00 25.00           C
ATOM    228  CA  GLY   228      11.945  15.990  -2.328  1.00 25.00           C
ATOM    229  CA  ALA   229      14.993  18.034  -3.424  1.00 25.00           C
ATOM    230  CA  VAL   230      17.311  15.146  -2.447  1.00 25.00           C
ATOM    231  CA  GLU   231      15.144  12.699  -4.444  1.00 25.00           C
ATOM    232  CA  PRO   232      15.265  15.030  -7.479  1.00 25.00           C
ATOM    233  CA  ILE   233      19.076  15.262  -7.181  1.00 25.00           C
ATOM    234  CA  ILE   234      19.318  11.444  -7.001  1.00 25.00           C
ATOM    235  CA  ALA   235      17.110  11.133 -10.114  1.00 25.00           C
ATOM    236  CA  ALA   236      19.322  13.652 -11.965  1.00 25.00           C
ATOM    237  CA  ALA   237      22.449  11.683 -10.961  1.00 25.00           C
ATOM    238  CA  GLY   238      20.838   8.441 -12.211  1.00 25.00           C
ATOM    239  CA  GLU   239      19.957  10.130 -15.533  1.00 25.00           C
ATOM    240  CA  VAL   240      23.038   8.581 -17.004  1.00 25.00           C
ATOM    241  CA  ASP   241      23.807   5.381 -15.085  1.00 25.00           C
ATOM    242  CA  ALA   242      25.696   6.810 -12.050  1.00 25.00           C
ATOM    243  CA  ASP   243      25.101   6.993  -8.341  1.00 25.00           C
ATOM    244  CA  PHE   244      25.859   8.077  -4.795  1.00 25.00           C
ATOM    245  CA  VAL   245      26.706   7.885  -1.095  1.00 25.00           C
ATOM    246  CA  LEU   246      24.030  10.165   0.296  1.00 25.00           C
ATOM    247  CA  ALA   247      23.597  12.719   2.985  1.00 25.00           C
ATOM    248  CA  LEU   248      23.053  13.338   6.668  1.00 25.00           C
ATOM    249  CA  GLY   249      22.168  10.933   9.480  1.00 25.00           C
ATOM    250  CA  ASP   250      19.292   8.419   9.698  1.00 25.00           C
ATOM    251  CA  LEU   251      15.748   8.158   8.231  1.00 25.00           C
ATOM    252  CA  ASP   252      14.883   4.642   7.065  1.00 25.00           C
ATOM    253  CA  ILE   253      16.496   5.188   3.662  1.00 25.00           C
ATOM    254  CA  SER   254      13.485   3.208   2.368  1.00 25.00           C
ATOM    255  CA  PRO   255      13.012   5.735  -0.471  1.00 25.00           C
ATOM    256  CA  LEU   256      15.260   4.866  -3.406  1.00 25.00           C
ATOM    257  CA  GLY   257      12.381   2.618  -4.538  1.00 25.00           C
ATOM    258  CA  THR   258      13.643  -0.372  -6.462  1.00 25.00           C
ATOM    259  CA  LEU   259      17.274   0.701  -6.227  1.00 25.00           C
ATOM    260  CA  PRO   260      18.406   0.478  -9.857  1.00 25.00           C
ATOM    261  CA  ARG   261      21.501  -1.602 -10.775  1.00 25.00           C
ATOM    262  CA  ASN   262      23.216   0.796  -8.430  1.00 25.00           C
ATOM    263  CA  VAL   263      23.290   3.262  -5.541  1.00 25.00           C
ATOM    264  CA  ARG   264      24.386   3.050  -1.866  1.00 25.00           C
ATOM    265  CA  ALA   265      23.211   4.828   1.284  1.00 25.00           C
ATOM    266  CA  VAL   266      26.312   3.961   3.353  1.00 25.00           C
ATOM    267  CA  GLY   267      26.599   4.482   7.111  1.00 25.00           C
ATOM    268  CA  TRP   268      30.356   5.040   6.734  1.00 25.00           C
ATOM    269  CA  THR   269      31.984   6.243   3.563  1.00 25.00           C
ATOM    270  CA  PRO   270      34.933   5.753   1.245  1.00 25.00           C
ATOM    271  CA  LEU   271      36.045   9.076  -0.309  1.00 25.00           C
ATOM    272  CA  HIS   272      39.583   8.679  -1.719  1.00 25.00           C
ATOM    273  CA  THR   273      38.456   5.637  -3.754  1.00 25.00           C
ATOM    274  CA  LEU   274      35.475   7.619  -5.114  1.00 25.00           C
ATOM    275  CA  LEU   275      37.802  10.502  -6.083  1.00 25.00           C
ATOM    276  CA  ARG   276      39.129   8.562  -8.992  1.00 25.00           C
ATOM    277  CA  THR   277      35.595   8.034 -10.278  1.00 25.00           C
ATOM    278  CA  CYS   278      33.748  11.115  -9.065  1.00 25.00           C
ATOM    279  CA  THR   279      32.252  14.226 -10.690  1.00 25.00           C
ATOM    280  CA  ALA   280      29.536  16.046  -8.769  1.00 25.00           C
ATOM    281  CA  VAL   281      29.881  16.616  -5.029  1.00 25.00           C
ATOM    282  CA  VAL   282      26.159  17.007  -4.516  1.00 25.00           C
ATOM    283  CA  HIS   283      24.060  18.356  -1.679  1.00 25.00           C
ATOM    284  CA  HIS   284      23.671  19.525   1.886  1.00 25.00           C
ATOM    285  CA  GLY   285      26.329  18.398   4.388  1.00 25.00           C
ATOM    286  CA  GLY   286      28.229  21.687   4.025  1.00 25.00           C
ATOM    287  CA  GLY   287      32.019  21.508   3.597  1.00 25.00           C
ATOM    288  CA  GLY   288      32.046  17.838   2.502  1.00 25.00           C
ATOM    289  CA  THR   289      31.717  18.903  -1.162  1.00 25.00           C
ATOM    290  CA  VAL   290      34.622  21.362  -0.732  1.00 25.00           C
ATOM    291  CA  MET   291      36.758  18.602   0.844  1.00 25.00           C
ATOM    292  CA  THR   292      35.929  16.261  -2.072  1.00 25.00           C
ATOM    293  CA  ALA   293      36.897  18.994  -4.573  1.00 25.00           C
ATOM    294  CA  ILE   294      40.207  19.546  -2.728  1.00 25.00           C
ATOM    295  CA  ASP   295      40.905  15.781  -2.804  1.00 25.00           C
ATOM    296  CA  ALA   296      40.170  15.696  -6.562  1.00 25.00           C
ATOM    297  CA  GLY   297      37.726  17.393  -8.968  1.00 25.00           C
ATOM    298  CA  ILE   298      34.386  16.467  -7.371  1.00 25.00           C
ATOM    299  CA  PRO   299      32.994  19.685  -8.907  1.00 25.00           C
ATOM    300  CA  GLN   300      31.397  21.396  -5.858  1.00 25.00           C
ATOM    301  CA  LEU   301      27.899  21.730  -4.391  1.00 25.00           C
ATOM    302  CA  LEU   302      26.820  22.437  -0.819  1.00 25.00           C
ATOM    303  CA  ALA   303      23.200  23.305  -1.700  1.00 25.00           C
ATOM    304  CA  PRO   304      22.282  25.690   1.084  1.00 25.00           C
ATOM    305  CA  ASP   305      19.900  28.370  -0.174  1.00 25.00           C
ATOM    306  CA  PRO   306      22.268  31.141   0.929  1.00 25.00           C
ATOM    307  CA  ARG   307      22.271  30.166   4.620  1.00 25.00           C
ATOM    308  CA  ASP   308      25.880  31.281   4.621  1.00 25.00           C
ATOM    309  CA  GLN   309      26.915  27.716   4.041  1.00 25.00           C
ATOM    310  CA  PHE   310      27.060  28.222   0.309  1.00 25.00           C
ATOM    311  CA  GLN   311      30.324  30.197  -0.031  1.00 25.00           C
ATOM    312  CA  HIS   312      31.891  27.314  -2.004  1.00 25.00           C
ATOM    313  CA  THR   313      28.836  27.199  -4.311  1.00 25.00           C
ATOM    314  CA  ALA   314      29.081  30.980  -4.866  1.00 25.00           C
ATOM    315  CA  ARG   315      32.804  30.641  -5.698  1.00 25.00           C
ATOM    316  CA  GLU   316      32.018  27.835  -8.184  1.00 25.00           C
ATOM    317  CA  ALA   317      29.321  30.007  -9.820  1.00 25.00           C
ATOM    318  CA  VAL   318      31.796  32.916 -10.096  1.00 25.00           C
ATOM    319  CA  SER   319      34.387  30.592 -11.696  1.00 25.00           C
ATOM    320  CA  ARG   320      32.230  28.004 -13.410  1.00 25.00           C
ATOM    321  CA  ARG   321      31.304  24.499 -12.325  1.00 25.00           C
ATOM    322  CA  GLY   322      28.373  24.541  -9.857  1.00 25.00           C
ATOM    323  CA  ILE   323      25.328  24.590  -7.645  1.00 25.00           C
ATOM    324  CA  GLY   324      24.211  20.998  -7.722  1.00 25.00           C
ATOM    325  CA  LEU   325      20.676  20.518  -6.515  1.00 25.00           C
ATOM    326  CA  VAL   326      19.903  24.122  -5.555  1.00 25.00           C
ATOM    327  CA  SER   327      16.445  22.901  -4.532  1.00 25.00           C
ATOM    328  CA  THR   328      14.835  24.735  -7.403  1.00 25.00           C
ATOM    329  CA  SER   329      12.669  22.478  -9.463  1.00 25.00           C
ATOM    330  CA  ASP   330      15.384  20.265 -10.865  1.00 25.00           C
ATOM    331  CA  LYS   331      15.253  21.230 -14.568  1.00 25.00           C
ATOM    332  CA  VAL   332      18.451  23.298 -14.168  1.00 25.00           C
ATOM    333  CA  ASP   333      20.180  20.339 -12.459  1.00 25.00           C
ATOM    334  CA  ALA   334      19.088  18.024 -15.307  1.00 25.00           C
ATOM    335  CA  ASP   335      20.446  20.512 -17.883  1.00 25.00           C
ATOM    336  CA  LEU   336      23.774  20.687 -15.995  1.00 25.00           C
ATOM    337  CA  LEU   337      23.967  16.863 -15.930  1.00 25.00           C
ATOM    338  CA  ARG   338      23.280  16.740 -19.695  1.00 25.00           C
ATOM    339  CA  ARG   339      26.033  19.332 -20.308  1.00 25.00           C
ATOM    340  CA  LEU   340      28.471  17.280 -18.185  1.00 25.00           C
ATOM    341  CA  ILE   341      27.579  14.126 -20.165  1.00 25.00           C
ATOM    342  CA  GLY   342      29.763  15.074 -23.151  1.00 25.00           C
ATOM    343  CA  ASP   343      33.289  13.981 -23.822  1.00 25.00           C
ATOM    344  CA  GLU   344      36.532  15.910 -23.288  1.00 25.00           C
ATOM    345  CA  SER   345      36.598  19.698 -22.729  1.00 25.00           C
ATOM    346  CA  LEU   346      35.303  19.219 -19.156  1.00 25.00           C
ATOM    347  CA  ARG   347      38.009  16.589 -18.502  1.00 25.00           C
ATOM    348  CA  THR   348      40.686  18.974 -19.848  1.00 25.00           C
ATOM    349  CA  ALA   349      39.372  21.767 -17.581  1.00 25.00           C
ATOM    350  CA  ALA   350      39.474  19.404 -14.569  1.00 25.00           C
ATOM    351  CA  ARG   351      43.075  18.424 -15.428  1.00 25.00           C
ATOM    352  CA  GLU   352      44.045  22.119 -15.689  1.00 25.00           C
ATOM    353  CA  VAL   353      42.429  22.808 -12.285  1.00 25.00           C
ATOM    354  CA  ARG   354      44.343  19.864 -10.753  1.00 25.00           C
ATOM    355  CA  GLU   355      47.617  21.190 -12.235  1.00 25.00           C
ATOM    356  CA  GLU   356      46.889  24.664 -10.798  1.00 25.00           C
ATOM    357  CA  MET   357      46.190  23.125  -7.362  1.00 25.00           C
ATOM    358  CA  VAL   358      49.483  21.176  -7.538  1.00 25.00           C
ATOM    359  CA  ALA   359      53.089  22.074  -6.906  1.00 25.00           C
TER
END
