
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  148 (  148),  selected  148 , name T0333TS393_1-D2
# Molecule2: number of CA atoms  148 ( 1087),  selected  148 , name T0333_D2.pdb
# PARAMETERS: T0333TS393_1-D2.T0333_D2.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   148       212 - 359         4.71     4.71
  LCS_AVERAGE:    100.00

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    28       332 - 359         1.80     6.76
  LCS_AVERAGE:     11.84

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    17       343 - 359         0.86     5.47
  LCS_AVERAGE:      5.51

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  148
LCS_GDT     E     212     E     212      4    5  148     1    6   19   25   34   46   60   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     V     213     V     213      4    6  148     3   10   17   26   37   47   60   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     A     214     A     214      4    9  148     3    4   14   25   37   45   55   76   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     I     215     I     215      7   12  148     3    4    9   13   19   25   32   43   50   61   69   87   99  126  134  142  145  146  147  148 
LCS_GDT     T     216     T     216      7   12  148     3    4    9   13   20   28   33   49   58   88  100  124  130  135  139  143  145  146  147  148 
LCS_GDT     M     217     M     217      7   12  148     3    5   14   23   31   41   58   76   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     G     218     G     218      7   12  148     4   14   21   26   37   48   65   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     T     219     T     219      7   12  148     9   14   21   26   37   48   65   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     I     220     I     220      7   12  148     4    5   20   25   36   48   65   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     E     221     E     221      7   12  148     4    5    9   16   20   36   61   79   96  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     L     222     L     222      5   12  148     3    4   21   25   37   48   65   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     Q     223     Q     223      5   17  148     3    4    8   21   32   44   55   70   85  106  119  127  130  135  139  143  145  146  147  148 
LCS_GDT     A     224     A     224      5   17  148     3    4    6   12   26   40   52   63   81   98  111  127  130  135  138  142  145  146  147  148 
LCS_GDT     F     225     F     225      4   17  148     3    4   11   24   33   43   52   63   82   98  118  127  130  135  139  143  145  146  147  148 
LCS_GDT     G     226     G     226      4   17  148     3    4    5    9   19   37   48   61   75   99  118  127  130  135  139  143  145  146  147  148 
LCS_GDT     I     227     I     227     13   18  148     4   12   21   28   37   48   65   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     G     228     G     228     13   18  148     4   12   21   28   37   48   65   81   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     A     229     A     229     13   18  148     4    9   18   25   36   47   61   77   96  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     V     230     V     230     13   18  148    12   18   23   29   37   48   65   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     E     231     E     231     13   18  148     9   18   23   29   37   48   65   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     P     232     P     232     13   18  148     9   18   23   29   37   48   65   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     I     233     I     233     13   18  148     9   18   23   29   37   48   65   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     I     234     I     234     13   18  148     9   14   23   29   37   48   65   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     A     235     A     235     13   18  148     9   14   21   29   37   48   65   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     A     236     A     236     13   18  148     9   14   21   29   37   48   65   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     A     237     A     237     13   18  148     9   14   21   26   37   48   65   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     G     238     G     238     13   18  148     9   14   21   26   37   47   60   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     E     239     E     239     13   18  148     5   14   21   26   37   48   65   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     V     240     V     240     12   18  148     3   10   18   26   35   48   65   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     D     241     D     241     12   18  148     3    6    8   23   34   47   60   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     A     242     A     242      5   18  148     3    5    8   16   34   47   60   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     D     243     D     243      5   18  148     3    5    8   19   30   40   56   80   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     F     244     F     244      5   18  148     3    6   16   24   32   41   58   80   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     V     245     V     245      4   12  148     3   16   18   21   27   33   39   54   67   82   98  112  127  135  139  143  145  146  147  148 
LCS_GDT     L     246     L     246      4   12  148     3    5   19   24   30   40   55   72   87  108  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     A     247     A     247      4   10  148     1    6   14   21   32   43   55   76   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     L     248     L     248      4    7  148     1    8   19   24   32   47   60   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     G     249     G     249      4    7  148     3    4    8   16   27   42   55   70   90  108  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     D     250     D     250      4    7  148     3    4    6   16   29   37   52   63   75   87  111  123  130  135  139  143  145  146  147  148 
LCS_GDT     L     251     L     251      4    7  148     3    5   21   26   37   47   65   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     D     252     D     252      4    7  148     3    6   21   26   37   47   65   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     I     253     I     253      4    7  148     3   11   21   26   37   48   65   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     S     254     S     254      4    7  148     4   11   21   28   37   48   65   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     P     255     P     255      3    6  148     3    3   16   26   33   41   56   71   83   97  116  127  130  135  139  143  145  146  147  148 
LCS_GDT     L     256     L     256      4    7  148     3   11   15   26   34   46   60   80   96  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     G     257     G     257      4    9  148     3    3   21   26   37   48   65   81   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     T     258     T     258      4    9  148     3    4   14   29   37   48   65   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     L     259     L     259      4    9  148     3    3    7   29   36   48   65   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     P     260     P     260      4    9  148     3    3    5   24   35   43   52   69   95  110  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     R     261     R     261      4    9  148     3    3   14   26   37   46   57   76   96  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     N     262     N     262      5    9  148     3    4   16   25   37   46   55   77   96  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     V     263     V     263      5    9  148     4   10   18   26   37   47   65   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     R     264     R     264      5    9  148     4    6   17   23   32   46   59   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     A     265     A     265      5    9  148     4    4   10   17   27   40   52   71   95  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     V     266     V     266      5    8  148     3    4    6    7    9   13   15   41   49   57   81  102  117  130  137  143  145  146  147  148 
LCS_GDT     G     267     G     267      4    8  148     3    4    4    7    9   16   20   28   33   39   63   78  104  124  129  139  143  146  147  148 
LCS_GDT     W     268     W     268      4    8  148     4    4    4   18   23   34   40   56   73   98  111  124  130  135  139  143  145  146  147  148 
LCS_GDT     T     269     T     269      4   10  148    11   16   19   26   36   48   65   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     P     270     P     270      8   16  148     3    7   16   26   34   46   64   81   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     L     271     L     271      8   16  148     5    9   23   29   36   48   65   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     H     272     H     272      8   16  148     5   18   23   29   36   48   65   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     T     273     T     273      8   16  148     5    9   23   29   36   48   65   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     L     274     L     274      8   16  148     5   16   23   29   36   48   65   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     L     275     L     275      8   16  148     5    9   22   29   36   48   65   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     R     276     R     276      8   16  148     4    7   16   26   35   48   65   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     T     277     T     277      8   20  148     3    9   16   26   34   41   58   74   96  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     C     278     C     278      8   20  148     3    5   14   18   26   39   57   74   88  109  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     T     279     T     279      5   27  148     3   11   19   26   34   46   60   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     A     280     A     280      5   27  148     4    9   21   26   34   46   62   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     V     281     V     281      5   27  148     4   10   21   26   34   47   65   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     V     282     V     282      5   27  148     4   11   21   26   34   47   60   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     H     283     H     283      5   27  148     4   10   21   26   37   47   65   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     H     284     H     284      5   27  148     3    5   14   24   34   45   59   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     G     285     G     285      3   27  148     3    9   21   25   34   47   60   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     G     286     G     286      3   27  148     3    8   19   25   33   47   60   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     G     287     G     287      3   27  148     3    3   16   23   36   48   65   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     G     288     G     288     10   27  148     5   14   21   26   37   47   65   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     T     289     T     289     10   27  148     8   11   21   26   37   47   65   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     V     290     V     290     10   27  148     8   13   21   26   37   47   65   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     M     291     M     291     10   27  148     8   11   21   26   37   47   60   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     T     292     T     292     10   27  148     8   13   21   26   37   47   65   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     A     293     A     293     10   27  148     8   14   21   26   37   47   65   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     I     294     I     294     10   27  148     8   14   21   26   37   47   62   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     D     295     D     295     10   27  148     8   14   21   26   37   47   65   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     A     296     A     296     10   27  148     8   11   21   26   36   47   65   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     G     297     G     297     10   27  148     0    4    9   23   32   40   56   81   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     I     298     I     298      5   27  148     3    4    8   13   30   40   49   70   86  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     P     299     P     299      6   27  148     4    8   14   26   34   47   60   74   91  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     Q     300     Q     300      6   27  148     3    4    6   20   32   45   59   74   88  109  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     L     301     L     301      6   27  148     3    8   11   20   31   38   47   57   81   96  114  124  130  135  139  143  145  146  147  148 
LCS_GDT     L     302     L     302      6   27  148     3   10   21   26   34   46   59   74   95  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     A     303     A     303      6   27  148     3   10   17   26   34   41   59   76   95  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     P     304     P     304      6   27  148     4   11   21   25   34   46   59   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     D     305     D     305      4   27  148     3    6   14   21   29   41   56   76   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     P     306     P     306      4    7  148     3    4    6   19   32   41   56   72   86  100  116  125  130  135  139  143  145  146  147  148 
LCS_GDT     R     307     R     307      4    7  148     3    4    6   19   32   40   53   70   82   96  107  120  130  135  139  143  145  146  147  148 
LCS_GDT     D     308     D     308      3    7  148     3    4    5   13   25   40   53   63   82   92  103  117  130  134  139  143  145  146  147  148 
LCS_GDT     Q     309     Q     309      3    7  148     3    4    9   15   32   37   55   71   94  107  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     F     310     F     310     10   11  148     3   14   23   29   35   48   65   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     Q     311     Q     311     10   11  148     4   10   10   10   32   41   56   72   94  109  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     H     312     H     312     10   11  148     8   10   10   10   14   21   27   43   54   63   72  100  115  132  136  142  145  146  147  148 
LCS_GDT     T     313     T     313     10   11  148     8   10   10   10   11   11   24   46   72  100  118  127  130  135  139  143  145  146  147  148 
LCS_GDT     A     314     A     314     10   11  148     8   10   18   25   37   47   65   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     R     315     R     315     10   11  148     8   10   10   13   25   41   56   72   95  109  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     E     316     E     316     10   11  148     8   10   10   12   30   41   48   60   95  109  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     A     317     A     317     10   11  148     8   10   10   15   27   40   58   77   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     V     318     V     318     10   11  148     8   10   10   10   11   19   35   64   85  109  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     S     319     S     319     10   11  148     8   10   10   26   37   46   62   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     R     320     R     320     10   11  148     6   10   10   13   16   25   49   81   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     R     321     R     321      3    6  148     3    3    5    6   12   16   22   36   51   77   97  114  130  135  139  143  145  146  147  148 
LCS_GDT     G     322     G     322      3    6  148     3    3    5    5    7    8   12   37   44   67   79  100  118  131  139  143  145  146  147  148 
LCS_GDT     I     323     I     323      3    6  148     3    3    5    5    7    7   13   23   31   38   58   70   91  103  115  132  140  144  147  148 
LCS_GDT     G     324     G     324      3    6  148     3    6    8   12   18   31   43   54   64   72   89  100  116  130  138  143  145  146  147  148 
LCS_GDT     L     325     L     325      3    6  148     3    5    8   10   14   21   31   47   57   74   84   94  112  125  137  143  145  146  147  148 
LCS_GDT     V     326     V     326      4    5  148     3    3    9   12   19   24   37   51   65   83   94  107  124  132  139  143  145  146  147  148 
LCS_GDT     S     327     S     327      4    5  148     3    3    4    6   23   39   54   74   86  109  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     T     328     T     328      4    5  148     3    3    7   18   29   40   52   71   90  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     S     329     S     329      4    5  148     4    4    4   12   16   26   39   52   65   79   99  121  130  135  138  143  145  146  147  148 
LCS_GDT     D     330     D     330      4    5  148     9   12   18   29   37   48   65   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     K     331     K     331      4    5  148     4    4   10   19   31   42   57   76   96  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     V     332     V     332      4   28  148     4    4    4    8   23   34   53   72   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     D     333     D     333     10   28  148     9    9   16   25   34   46   59   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     A     334     A     334     10   28  148     9    9   21   25   34   46   61   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     D     335     D     335     10   28  148     9    9   19   25   34   46   61   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     L     336     L     336     10   28  148     9    9   19   25   34   47   65   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     L     337     L     337     10   28  148     9   14   19   25   35   47   65   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     R     338     R     338     10   28  148     9   11   19   24   32   46   65   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     R     339     R     339     10   28  148     9    9   11   22   32   43   65   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     L     340     L     340     10   28  148     9   16   19   24   35   48   65   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     I     341     I     341     10   28  148     9   10   16   21   32   44   65   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     G     342     G     342     10   28  148     4    9   11   20   35   46   65   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     D     343     D     343     17   28  148     3    5   17   27   36   47   56   72   89  106  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     E     344     E     344     17   28  148    14   16   22   29   36   48   65   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     S     345     S     345     17   28  148    14   18   23   29   36   48   64   81   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     L     346     L     346     17   28  148    14   18   23   29   36   48   65   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     R     347     R     347     17   28  148    14   18   23   29   36   48   65   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     T     348     T     348     17   28  148    14   18   23   29   36   48   65   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     A     349     A     349     17   28  148    14   18   23   29   36   48   65   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     A     350     A     350     17   28  148    14   18   23   29   36   48   65   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     R     351     R     351     17   28  148    14   18   23   29   36   48   65   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     E     352     E     352     17   28  148    14   18   23   29   36   48   65   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     V     353     V     353     17   28  148    14   18   23   29   36   48   65   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     R     354     R     354     17   28  148    14   18   23   29   36   48   65   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     E     355     E     355     17   28  148    14   18   23   29   36   48   65   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     E     356     E     356     17   28  148    14   18   23   29   36   48   64   81   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     M     357     M     357     17   28  148    14   18   23   29   36   48   65   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     V     358     V     358     17   28  148    10   18   23   29   36   48   65   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_GDT     A     359     A     359     17   28  148     0    3   16   29   36   48   65   82   97  111  121  127  130  135  139  143  145  146  147  148 
LCS_AVERAGE  LCS_A:  39.12  (   5.51   11.84  100.00 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     14     18     23     29     37     48     65     82     97    111    121    127    130    135    139    143    145    146    147    148 
GDT PERCENT_CA   9.46  12.16  15.54  19.59  25.00  32.43  43.92  55.41  65.54  75.00  81.76  85.81  87.84  91.22  93.92  96.62  97.97  98.65  99.32 100.00
GDT RMS_LOCAL    0.27   0.62   0.88   1.15   1.67   2.06   2.74   3.13   3.34   3.59   3.77   3.89   3.98   4.13   4.29   4.47   4.52   4.57   4.63   4.71
GDT RMS_ALL_CA   5.57   5.54   5.55   5.54   5.77   5.40   4.92   4.74   4.73   4.72   4.72   4.72   4.72   4.73   4.71   4.71   4.71   4.71   4.71   4.71

#      Molecule1      Molecule2       DISTANCE
LGA    E     212      E     212          4.133
LGA    V     213      V     213          3.937
LGA    A     214      A     214          4.426
LGA    I     215      I     215          8.292
LGA    T     216      T     216          6.648
LGA    M     217      M     217          4.419
LGA    G     218      G     218          0.596
LGA    T     219      T     219          1.306
LGA    I     220      I     220          3.941
LGA    E     221      E     221          4.727
LGA    L     222      L     222          3.633
LGA    Q     223      Q     223          6.012
LGA    A     224      A     224          7.538
LGA    F     225      F     225          6.459
LGA    G     226      G     226          6.101
LGA    I     227      I     227          3.374
LGA    G     228      G     228          4.224
LGA    A     229      A     229          4.864
LGA    V     230      V     230          2.002
LGA    E     231      E     231          2.713
LGA    P     232      P     232          2.911
LGA    I     233      I     233          1.928
LGA    I     234      I     234          2.609
LGA    A     235      A     235          3.624
LGA    A     236      A     236          3.145
LGA    A     237      A     237          3.176
LGA    G     238      G     238          3.977
LGA    E     239      E     239          3.294
LGA    V     240      V     240          2.613
LGA    D     241      D     241          3.845
LGA    A     242      A     242          3.298
LGA    D     243      D     243          4.337
LGA    F     244      F     244          4.348
LGA    V     245      V     245          7.386
LGA    L     246      L     246          5.448
LGA    A     247      A     247          4.612
LGA    L     248      L     248          3.444
LGA    G     249      G     249          5.350
LGA    D     250      D     250          7.140
LGA    L     251      L     251          3.311
LGA    D     252      D     252          2.978
LGA    I     253      I     253          1.575
LGA    S     254      S     254          1.420
LGA    P     255      P     255          6.418
LGA    L     256      L     256          4.641
LGA    G     257      G     257          4.090
LGA    T     258      T     258          3.101
LGA    L     259      L     259          3.641
LGA    P     260      P     260          5.338
LGA    R     261      R     261          5.012
LGA    N     262      N     262          4.700
LGA    V     263      V     263          3.025
LGA    R     264      R     264          3.777
LGA    A     265      A     265          5.067
LGA    V     266      V     266          8.385
LGA    G     267      G     267         10.172
LGA    W     268      W     268          7.123
LGA    T     269      T     269          2.249
LGA    P     270      P     270          4.369
LGA    L     271      L     271          3.262
LGA    H     272      H     272          2.717
LGA    T     273      T     273          3.954
LGA    L     274      L     274          3.317
LGA    L     275      L     275          2.114
LGA    R     276      R     276          3.655
LGA    T     277      T     277          4.790
LGA    C     278      C     278          5.357
LGA    T     279      T     279          3.898
LGA    A     280      A     280          3.084
LGA    V     281      V     281          2.628
LGA    V     282      V     282          3.326
LGA    H     283      H     283          2.867
LGA    H     284      H     284          3.563
LGA    G     285      G     285          3.955
LGA    G     286      G     286          3.393
LGA    G     287      G     287          1.651
LGA    G     288      G     288          2.898
LGA    T     289      T     289          2.634
LGA    V     290      V     290          2.898
LGA    M     291      M     291          3.617
LGA    T     292      T     292          2.318
LGA    A     293      A     293          2.072
LGA    I     294      I     294          3.085
LGA    D     295      D     295          2.507
LGA    A     296      A     296          1.870
LGA    G     297      G     297          4.076
LGA    I     298      I     298          5.363
LGA    P     299      P     299          5.070
LGA    Q     300      Q     300          5.713
LGA    L     301      L     301          6.634
LGA    L     302      L     302          4.941
LGA    A     303      A     303          4.906
LGA    P     304      P     304          3.884
LGA    D     305      D     305          4.695
LGA    P     306      P     306          6.386
LGA    R     307      R     307          7.389
LGA    D     308      D     308          7.830
LGA    Q     309      Q     309          5.383
LGA    F     310      F     310          3.324
LGA    Q     311      Q     311          5.286
LGA    H     312      H     312          8.137
LGA    T     313      T     313          5.694
LGA    A     314      A     314          2.266
LGA    R     315      R     315          5.064
LGA    E     316      E     316          4.861
LGA    A     317      A     317          4.513
LGA    V     318      V     318          5.496
LGA    S     319      S     319          3.691
LGA    R     320      R     320          4.295
LGA    R     321      R     321          6.801
LGA    G     322      G     322          8.118
LGA    I     323      I     323         11.072
LGA    G     324      G     324          9.076
LGA    L     325      L     325          9.673
LGA    V     326      V     326          8.502
LGA    S     327      S     327          5.669
LGA    T     328      T     328          5.344
LGA    S     329      S     329          7.365
LGA    D     330      D     330          3.866
LGA    K     331      K     331          5.157
LGA    V     332      V     332          4.517
LGA    D     333      D     333          3.749
LGA    A     334      A     334          3.374
LGA    D     335      D     335          3.466
LGA    L     336      L     336          2.181
LGA    L     337      L     337          1.878
LGA    R     338      R     338          2.890
LGA    R     339      R     339          3.053
LGA    L     340      L     340          2.818
LGA    I     341      I     341          3.505
LGA    G     342      G     342          3.366
LGA    D     343      D     343          5.713
LGA    E     344      E     344          3.816
LGA    S     345      S     345          4.358
LGA    L     346      L     346          3.336
LGA    R     347      R     347          2.813
LGA    T     348      T     348          3.719
LGA    A     349      A     349          3.846
LGA    A     350      A     350          2.995
LGA    R     351      R     351          3.028
LGA    E     352      E     352          3.653
LGA    V     353      V     353          3.524
LGA    R     354      R     354          3.061
LGA    E     355      E     355          3.625
LGA    E     356      E     356          4.117
LGA    M     357      M     357          3.796
LGA    V     358      V     358          3.975
LGA    A     359      A     359          3.656

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  148  148    4.0     82    3.13    45.946    39.642     2.539

LGA_LOCAL      RMSD =  3.129  Number of atoms =   82  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  4.710  Number of atoms =  148 
Std_ALL_ATOMS  RMSD =  4.706  (standard rmsd on all 148 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.728319 * X  +  -0.613880 * Y  +   0.304470 * Z  +  34.073967
  Y_new =  -0.448745 * X  +   0.763085 * Y  +   0.465113 * Z  +  18.505245
  Z_new =  -0.517860 * X  +   0.202122 * Y  +  -0.831245 * Z  +   7.590015 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.903066   -0.238526  [ DEG:   166.3335    -13.6665 ]
  Theta =   0.544348    2.597245  [ DEG:    31.1888    148.8112 ]
  Phi   =  -2.589392    0.552201  [ DEG:  -148.3612     31.6388 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0333TS393_1-D2                               
REMARK     2: T0333_D2.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0333TS393_1-D2.T0333_D2.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  148  148   4.0   82   3.13  39.642     4.71
REMARK  ---------------------------------------------------------- 
MOLECULE T0333TS393_1-D2
PFRMAT TS
TARGET T0333
MODEL 1
PARENT N/A
ATOM    212  CA  GLU   212      29.618  10.319 -10.288  1.00 25.00           C
ATOM    213  CA  VAL   213      30.203  10.044  -6.519  1.00 25.00           C
ATOM    214  CA  ALA   214      30.799   8.868  -2.983  1.00 25.00           C
ATOM    215  CA  ILE   215      29.751   7.349   0.331  1.00 25.00           C
ATOM    216  CA  THR   216      28.130   8.992   3.361  1.00 25.00           C
ATOM    217  CA  MET   217      26.900  12.539   4.173  1.00 25.00           C
ATOM    218  CA  GLY   218      25.667  15.897   5.353  1.00 25.00           C
ATOM    219  CA  THR   219      23.098  14.449   7.747  1.00 25.00           C
ATOM    220  CA  ILE   220      20.815  17.270   6.484  1.00 25.00           C
ATOM    221  CA  GLU   221      20.972  15.495   3.123  1.00 25.00           C
ATOM    222  CA  LEU   222      17.732  13.663   4.017  1.00 25.00           C
ATOM    223  CA  GLN   223      15.608  16.817   4.158  1.00 25.00           C
ATOM    224  CA  ALA   224      14.944  19.648   1.687  1.00 25.00           C
ATOM    225  CA  PHE   225      17.240  19.744  -1.291  1.00 25.00           C
ATOM    226  CA  GLY   226      17.973  16.175  -0.277  1.00 25.00           C
ATOM    227  CA  ILE   227      14.753  14.122  -0.611  1.00 25.00           C
ATOM    228  CA  GLY   228      12.793  14.563  -3.872  1.00 25.00           C
ATOM    229  CA  ALA   229      15.682  16.588  -5.362  1.00 25.00           C
ATOM    230  CA  VAL   230      18.161  13.856  -4.334  1.00 25.00           C
ATOM    231  CA  GLU   231      15.934  11.193  -5.950  1.00 25.00           C
ATOM    232  CA  PRO   232      15.750  13.263  -9.167  1.00 25.00           C
ATOM    233  CA  ILE   233      19.563  13.619  -9.183  1.00 25.00           C
ATOM    234  CA  ILE   234      19.944   9.839  -8.710  1.00 25.00           C
ATOM    235  CA  ALA   235      17.521   9.207 -11.608  1.00 25.00           C
ATOM    236  CA  ALA   236      19.505  11.620 -13.824  1.00 25.00           C
ATOM    237  CA  ALA   237      22.761   9.826 -12.906  1.00 25.00           C
ATOM    238  CA  GLY   238      21.170   6.449 -13.758  1.00 25.00           C
ATOM    239  CA  GLU   239      19.988   7.829 -17.130  1.00 25.00           C
ATOM    240  CA  VAL   240      22.962   9.930 -17.982  1.00 25.00           C
ATOM    241  CA  ASP   241      25.809   7.761 -16.716  1.00 25.00           C
ATOM    242  CA  ALA   242      26.402   7.386 -12.990  1.00 25.00           C
ATOM    243  CA  ASP   243      25.651   7.290  -9.250  1.00 25.00           C
ATOM    244  CA  PHE   244      24.802   9.621  -6.384  1.00 25.00           C
ATOM    245  CA  VAL   245      23.423  12.662  -4.571  1.00 25.00           C
ATOM    246  CA  LEU   246      22.200  12.029  -1.053  1.00 25.00           C
ATOM    247  CA  ALA   247      22.578  10.522   2.390  1.00 25.00           C
ATOM    248  CA  LEU   248      22.880   9.642   6.047  1.00 25.00           C
ATOM    249  CA  GLY   249      22.220   9.156   9.778  1.00 25.00           C
ATOM    250  CA  ASP   250      18.633  10.095   8.881  1.00 25.00           C
ATOM    251  CA  LEU   251      18.119   6.336   8.434  1.00 25.00           C
ATOM    252  CA  ASP   252      15.428   3.890   7.245  1.00 25.00           C
ATOM    253  CA  ILE   253      16.119   5.444   3.829  1.00 25.00           C
ATOM    254  CA  SER   254      12.787   4.294   2.331  1.00 25.00           C
ATOM    255  CA  PRO   255      14.651   2.055  -0.156  1.00 25.00           C
ATOM    256  CA  LEU   256      16.093   4.052  -3.086  1.00 25.00           C
ATOM    257  CA  GLY   257      12.992   3.385  -5.254  1.00 25.00           C
ATOM    258  CA  THR   258      12.394  -0.109  -6.646  1.00 25.00           C
ATOM    259  CA  LEU   259      15.929   0.226  -7.990  1.00 25.00           C
ATOM    260  CA  PRO   260      19.113  -1.262  -9.501  1.00 25.00           C
ATOM    261  CA  ARG   261      22.507  -2.525 -10.577  1.00 25.00           C
ATOM    262  CA  ASN   262      24.182   0.342  -8.729  1.00 25.00           C
ATOM    263  CA  VAL   263      23.609   3.079  -6.143  1.00 25.00           C
ATOM    264  CA  ARG   264      23.812   4.592  -2.644  1.00 25.00           C
ATOM    265  CA  ALA   265      24.978   7.848  -1.123  1.00 25.00           C
ATOM    266  CA  VAL   266      26.764  11.152  -1.036  1.00 25.00           C
ATOM    267  CA  GLY   267      29.909  12.356   0.656  1.00 25.00           C
ATOM    268  CA  TRP   268      32.055  12.277   3.769  1.00 25.00           C
ATOM    269  CA  THR   269      33.072   8.654   4.153  1.00 25.00           C
ATOM    270  CA  PRO   270      34.824   6.096   1.899  1.00 25.00           C
ATOM    271  CA  LEU   271      35.673   9.199  -0.056  1.00 25.00           C
ATOM    272  CA  HIS   272      39.024  10.064  -1.696  1.00 25.00           C
ATOM    273  CA  THR   273      39.319   6.490  -3.038  1.00 25.00           C
ATOM    274  CA  LEU   274      35.764   6.698  -4.447  1.00 25.00           C
ATOM    275  CA  LEU   275      36.602  10.035  -6.132  1.00 25.00           C
ATOM    276  CA  ARG   276      38.904   8.660  -8.772  1.00 25.00           C
ATOM    277  CA  THR   277      35.999   8.998 -11.144  1.00 25.00           C
ATOM    278  CA  CYS   278      36.584  12.742 -10.756  1.00 25.00           C
ATOM    279  CA  THR   279      32.985  13.981 -10.803  1.00 25.00           C
ATOM    280  CA  ALA   280      29.669  15.498  -9.848  1.00 25.00           C
ATOM    281  CA  VAL   281      27.966  15.811  -6.528  1.00 25.00           C
ATOM    282  CA  VAL   282      25.758  17.850  -4.245  1.00 25.00           C
ATOM    283  CA  HIS   283      26.039  16.734  -0.604  1.00 25.00           C
ATOM    284  CA  HIS   284      26.447  19.540   1.852  1.00 25.00           C
ATOM    285  CA  GLY   285      26.421  23.045   3.351  1.00 25.00           C
ATOM    286  CA  GLY   286      28.567  21.814   6.196  1.00 25.00           C
ATOM    287  CA  GLY   287      31.498  23.062   4.200  1.00 25.00           C
ATOM    288  CA  GLY   288      33.039  19.656   5.034  1.00 25.00           C
ATOM    289  CA  THR   289      31.523  18.162   1.850  1.00 25.00           C
ATOM    290  CA  VAL   290      32.937  21.062  -0.213  1.00 25.00           C
ATOM    291  CA  MET   291      36.390  20.525   1.353  1.00 25.00           C
ATOM    292  CA  THR   292      36.206  16.787   0.537  1.00 25.00           C
ATOM    293  CA  ALA   293      35.244  17.599  -3.080  1.00 25.00           C
ATOM    294  CA  ILE   294      38.191  20.031  -3.343  1.00 25.00           C
ATOM    295  CA  ASP   295      40.557  17.351  -1.969  1.00 25.00           C
ATOM    296  CA  ALA   296      39.217  14.826  -4.519  1.00 25.00           C
ATOM    297  CA  GLY   297      36.743  16.195  -7.040  1.00 25.00           C
ATOM    298  CA  ILE   298      33.009  16.944  -6.729  1.00 25.00           C
ATOM    299  CA  PRO   299      33.994  20.585  -7.489  1.00 25.00           C
ATOM    300  CA  GLN   300      31.798  22.299  -4.940  1.00 25.00           C
ATOM    301  CA  LEU   301      28.630  21.806  -2.947  1.00 25.00           C
ATOM    302  CA  LEU   302      25.451  23.412  -1.591  1.00 25.00           C
ATOM    303  CA  ALA   303      22.462  21.230  -0.783  1.00 25.00           C
ATOM    304  CA  PRO   304      21.507  24.127   1.447  1.00 25.00           C
ATOM    305  CA  ASP   305      18.670  26.699   1.631  1.00 25.00           C
ATOM    306  CA  PRO   306      21.395  29.242   0.987  1.00 25.00           C
ATOM    307  CA  ARG   307      22.488  29.718   4.583  1.00 25.00           C
ATOM    308  CA  ASP   308      25.829  31.267   5.392  1.00 25.00           C
ATOM    309  CA  GLN   309      26.117  31.599   1.619  1.00 25.00           C
ATOM    310  CA  PHE   310      27.161  27.976   1.759  1.00 25.00           C
ATOM    311  CA  GLN   311      30.707  29.342   1.284  1.00 25.00           C
ATOM    312  CA  HIS   312      31.554  26.409  -1.027  1.00 25.00           C
ATOM    313  CA  THR   313      28.376  27.060  -3.061  1.00 25.00           C
ATOM    314  CA  ALA   314      29.293  30.766  -3.355  1.00 25.00           C
ATOM    315  CA  ARG   315      32.815  29.827  -4.530  1.00 25.00           C
ATOM    316  CA  GLU   316      31.336  27.445  -7.139  1.00 25.00           C
ATOM    317  CA  ALA   317      28.988  30.211  -8.368  1.00 25.00           C
ATOM    318  CA  VAL   318      31.944  32.630  -8.643  1.00 25.00           C
ATOM    319  CA  SER   319      33.926  30.024 -10.629  1.00 25.00           C
ATOM    320  CA  ARG   320      31.245  27.875 -12.174  1.00 25.00           C
ATOM    321  CA  ARG   321      31.483  24.223 -11.015  1.00 25.00           C
ATOM    322  CA  GLY   322      27.999  24.100  -9.414  1.00 25.00           C
ATOM    323  CA  ILE   323      25.198  23.629  -6.920  1.00 25.00           C
ATOM    324  CA  GLY   324      23.311  25.955  -9.186  1.00 25.00           C
ATOM    325  CA  LEU   325      20.950  27.810  -6.871  1.00 25.00           C
ATOM    326  CA  VAL   326      19.514  26.178  -3.779  1.00 25.00           C
ATOM    327  CA  SER   327      17.206  23.950  -5.810  1.00 25.00           C
ATOM    328  CA  THR   328      14.673  25.095  -8.433  1.00 25.00           C
ATOM    329  CA  SER   329      12.333  22.168  -9.215  1.00 25.00           C
ATOM    330  CA  ASP   330      13.905  18.664  -9.560  1.00 25.00           C
ATOM    331  CA  LYS   331      13.337  19.048 -13.327  1.00 25.00           C
ATOM    332  CA  VAL   332      15.761  22.011 -13.417  1.00 25.00           C
ATOM    333  CA  ASP   333      18.380  19.957 -11.522  1.00 25.00           C
ATOM    334  CA  ALA   334      17.938  17.066 -13.995  1.00 25.00           C
ATOM    335  CA  ASP   335      18.365  19.483 -16.935  1.00 25.00           C
ATOM    336  CA  LEU   336      21.551  20.894 -15.344  1.00 25.00           C
ATOM    337  CA  LEU   337      22.909  17.346 -14.860  1.00 25.00           C
ATOM    338  CA  ARG   338      22.143  16.526 -18.522  1.00 25.00           C
ATOM    339  CA  ARG   339      23.942  19.717 -19.638  1.00 25.00           C
ATOM    340  CA  LEU   340      26.974  18.788 -17.492  1.00 25.00           C
ATOM    341  CA  ILE   341      27.014  15.278 -19.025  1.00 25.00           C
ATOM    342  CA  GLY   342      27.724  15.544 -22.755  1.00 25.00           C
ATOM    343  CA  ASP   343      31.076  14.054 -23.866  1.00 25.00           C
ATOM    344  CA  GLU   344      34.453  14.915 -22.346  1.00 25.00           C
ATOM    345  CA  SER   345      35.422  18.617 -22.497  1.00 25.00           C
ATOM    346  CA  LEU   346      34.389  19.062 -18.836  1.00 25.00           C
ATOM    347  CA  ARG   347      36.481  16.010 -17.848  1.00 25.00           C
ATOM    348  CA  THR   348      39.491  17.429 -19.744  1.00 25.00           C
ATOM    349  CA  ALA   349      39.056  20.793 -17.966  1.00 25.00           C
ATOM    350  CA  ALA   350      38.900  19.010 -14.579  1.00 25.00           C
ATOM    351  CA  ARG   351      42.092  17.070 -15.425  1.00 25.00           C
ATOM    352  CA  GLU   352      43.842  20.331 -16.410  1.00 25.00           C
ATOM    353  CA  VAL   353      42.746  21.943 -13.114  1.00 25.00           C
ATOM    354  CA  ARG   354      44.079  18.927 -11.166  1.00 25.00           C
ATOM    355  CA  GLU   355      47.415  19.167 -13.031  1.00 25.00           C
ATOM    356  CA  GLU   356      47.627  22.905 -12.222  1.00 25.00           C
ATOM    357  CA  MET   357      46.919  22.170  -8.531  1.00 25.00           C
ATOM    358  CA  VAL   358      49.657  19.494  -8.513  1.00 25.00           C
ATOM    359  CA  ALA   359      53.242  20.505  -7.775  1.00 25.00           C
TER
END
