
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  148 (  148),  selected  148 , name T0333TS393_2-D2
# Molecule2: number of CA atoms  148 ( 1087),  selected  148 , name T0333_D2.pdb
# PARAMETERS: T0333TS393_2-D2.T0333_D2.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   148       212 - 359         4.71     4.71
  LCS_AVERAGE:    100.00

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    28       332 - 359         1.99     7.35
  LCS_AVERAGE:     10.34

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    17       342 - 358         0.98     5.68
  LONGEST_CONTINUOUS_SEGMENT:    17       343 - 359         0.57     5.88
  LCS_AVERAGE:      5.49

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  148
LCS_GDT     E     212     E     212      4    7  148     0    6    8   12   19   31   48   62   79   95  116  129  135  140  143  145  147  148  148  148 
LCS_GDT     V     213     V     213      4    7  148     3    7   12   17   28   41   57   67   89  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     A     214     A     214      4    7  148     3    7   12   16   28   40   60   73   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     I     215     I     215      4    7  148     3    4   11   18   32   47   60   74   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     T     216     T     216      4    7  148     3    8   20   31   37   47   60   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     M     217     M     217      3    7  148     3    6   13   26   35   47   60   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     G     218     G     218      3    7  148     0    3   19   24   30   40   58   74   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     T     219     T     219      3    5  148    12   17   21   26   37   44   58   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     I     220     I     220      3    4  148     3    3    4    4    6   10   17   57   76  102  114  127  135  140  143  145  147  148  148  148 
LCS_GDT     E     221     E     221      3   10  148     3    3    4    4    8   16   29   39   52   85  112  128  135  140  143  145  147  148  148  148 
LCS_GDT     L     222     L     222      4   12  148     4    5    8   18   36   47   58   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     Q     223     Q     223      4   17  148     4    5    8   12   33   47   57   67   91  104  118  129  135  140  143  145  147  148  148  148 
LCS_GDT     A     224     A     224      4   17  148     4    5    8   15   24   43   56   71   92  108  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     F     225     F     225      4   21  148     4    5    8   18   28   42   58   71   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     G     226     G     226     10   22  148     3    6    8   20   32   41   53   65   77   96  114  127  135  138  143  145  147  148  148  148 
LCS_GDT     I     227     I     227     13   22  148     4   12   17   26   36   47   57   74   95  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     G     228     G     228     13   22  148     3   12   17   24   36   47   58   74   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     A     229     A     229     13   22  148     3    6   13   22   36   47   58   74   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     V     230     V     230     13   22  148     9   12   20   31   37   47   58   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     E     231     E     231     13   22  148     9   19   25   31   37   47   58   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     P     232     P     232     13   22  148    15   20   25   31   37   47   58   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     I     233     I     233     13   22  148     9   13   25   31   37   47   60   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     I     234     I     234     13   22  148     9   13   25   31   37   47   60   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     A     235     A     235     13   22  148     9   12   20   29   37   47   58   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     A     236     A     236     13   22  148     9   12   20   29   36   47   58   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     A     237     A     237     13   22  148     9   12   20   29   36   47   58   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     G     238     G     238     13   22  148     9   12   18   29   36   47   57   74   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     E     239     E     239     13   22  148     4   12   20   29   36   47   57   74   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     V     240     V     240     11   22  148     0    6   18   29   36   47   57   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     D     241     D     241      6   22  148     3    9   20   29   36   47   58   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     A     242     A     242      5   22  148     3    5   10   31   37   44   60   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     D     243     D     243      7   22  148     3    7   15   29   36   47   60   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     F     244     F     244      7   22  148     3    9   20   29   36   47   60   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     V     245     V     245      7   22  148     3    6   16   26   36   47   60   73   95  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     L     246     L     246      7   22  148     3    6    7   18   27   40   60   73   90  109  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     A     247     A     247      7   22  148     3   12   20   29   36   47   57   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     L     248     L     248      7   20  148     3    6    9   16   25   44   60   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     G     249     G     249      7   20  148     5   12   20   29   36   47   57   74   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     D     250     D     250      3    8  148     3    3    5   22   36   47   57   68   91  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     L     251     L     251      4    6  148     3    4    4   13   27   40   54   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     D     252     D     252      4    6  148     3   12   20   29   36   47   58   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     I     253     I     253      4    6  148     3   10   20   29   36   47   58   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     S     254     S     254      4    6  148     3    9   20   29   36   47   58   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     P     255     P     255      3    6  148     3    3    8   12   28   44   58   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     L     256     L     256      3    6  148     3    3   17   23   30   44   58   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     G     257     G     257      3    6  148     3    3    4   12   26   39   56   69   92  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     T     258     T     258      3    7  148     3    4    9   22   36   47   58   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     L     259     L     259      3    7  148     3    3    4    9   15   28   48   67   92  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     P     260     P     260      8   13  148     4   15   19   24   37   44   58   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     R     261     R     261      8   13  148     4   15   19   26   37   47   58   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     N     262     N     262      8   13  148     4    6   25   31   37   47   58   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     V     263     V     263      8   13  148     4   20   25   31   37   47   60   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     R     264     R     264      8   13  148     3   20   25   31   37   47   60   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     A     265     A     265      8   13  148     3   20   25   31   37   47   60   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     V     266     V     266      8   13  148     3    7   25   31   37   47   60   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     G     267     G     267      8   13  148     3    7   25   31   37   47   60   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     W     268     W     268      6   13  148     3    5   10   26   37   47   60   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     T     269     T     269      4   13  148     3   17   21   31   37   47   60   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     P     270     P     270      8   13  148     0    6   20   23   33   47   58   72   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     L     271     L     271      8   13  148     6   15   19   24   33   47   60   72   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     H     272     H     272      8   13  148     6    7   20   24   35   47   60   73   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     T     273     T     273      8   13  148     6    7   13   19   32   47   57   70   89  107  118  127  135  140  143  145  147  148  148  148 
LCS_GDT     L     274     L     274      8   13  148     6    7   13   24   37   47   60   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     L     275     L     275      8   13  148     6    7   11   26   37   47   60   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     R     276     R     276      8   13  148     6    7   11   17   32   47   60   73   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     T     277     T     277      8   13  148     3    7   11   17   31   47   60   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     C     278     C     278      4   11  148     2    3    6   16   35   47   60   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     T     279     T     279      4   11  148     3    4    8   11   19   27   45   64   80  100  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     A     280     A     280      5   11  148     3    4    8   11   18   26   44   63   80  100  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     V     281     V     281      5   11  148     3    6   11   20   31   46   60   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     V     282     V     282      5   10  148     3   11   19   29   36   47   60   71   92  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     H     283     H     283      5    8  148     3   12   19   29   36   47   57   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     H     284     H     284      5    8  148     3    5   20   29   36   47   60   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     G     285     G     285      4    7  148     3    5    5   22   32   41   51   63   78   88  105  129  135  140  143  145  147  148  148  148 
LCS_GDT     G     286     G     286      4    6  148     3    8   19   29   36   47   57   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     G     287     G     287      4   10  148     3    5   13   20   33   46   58   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     G     288     G     288      9   10  148     5    9    9    9   12   19   50   65   76  101  118  129  135  140  143  145  147  148  148  148 
LCS_GDT     T     289     T     289      9   10  148     8    9   12   16   21   38   58   74   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     V     290     V     290      9   10  148     8    9   18   28   36   46   56   66   78   90  118  129  135  140  143  145  147  148  148  148 
LCS_GDT     M     291     M     291      9   10  148     8    9    9    9   12   21   29   45   64   78   95  122  135  140  143  145  147  148  148  148 
LCS_GDT     T     292     T     292      9   10  148     8    9   10   20   28   40   57   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     A     293     A     293      9   10  148     8    9    9    9   36   47   57   67   80   97  118  129  135  140  143  145  147  148  148  148 
LCS_GDT     I     294     I     294      9   10  148     8    9    9   14   26   39   45   54   66   75   87   99  110  130  140  145  147  148  148  148 
LCS_GDT     D     295     D     295      9   10  148     8    9    9    9   12   20   34   46   64   92  107  129  135  140  143  145  147  148  148  148 
LCS_GDT     A     296     A     296      9   10  148     8    9   17   29   36   47   57   74   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     G     297     G     297      4   10  148     4    9   17   27   35   46   57   67   80  101  118  129  135  140  143  145  147  148  148  148 
LCS_GDT     I     298     I     298      4   10  148     4    9   18   29   36   47   57   67   80  104  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     P     299     P     299      4   10  148     4    5    6    8   31   42   54   66   78   96  118  129  135  140  143  145  147  148  148  148 
LCS_GDT     Q     300     Q     300      3   10  148     3    7   10   20   32   47   60   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     L     301     L     301      3   10  148     1   12   20   29   36   47   60   74   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     L     302     L     302      4   10  148     2    7   18   29   36   47   60   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     A     303     A     303      4   10  148     3   10   18   29   36   47   60   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     P     304     P     304      4   10  148     3    4   11   29   36   47   60   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     D     305     D     305      4   10  148     3    4    8   17   27   42   60   73   95  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     P     306     P     306      3    7  148     3    3    6   11   32   47   60   71   82   96  112  126  134  140  143  145  147  148  148  148 
LCS_GDT     R     307     R     307      3    7  148     3    5    6   16   22   29   45   60   75   84   96  111  123  133  143  145  147  148  148  148 
LCS_GDT     D     308     D     308      5   13  148     3    4    6   10   16   29   52   68   75   95  106  115  129  138  143  145  147  148  148  148 
LCS_GDT     Q     309     Q     309      5   13  148     3    4    6   12   12   37   52   72   89  108  118  127  135  140  143  145  147  148  148  148 
LCS_GDT     F     310     F     310     10   13  148    15   20   25   31   37   44   58   74   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     Q     311     Q     311     10   13  148     4   10   10   20   33   47   60   73   95  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     H     312     H     312     10   13  148     9   10   10   12   13   23   37   54   73   92  111  125  135  140  143  145  147  148  148  148 
LCS_GDT     T     313     T     313     10   13  148     9   10   10   22   25   33   58   70   97  108  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     A     314     A     314     10   13  148     9   10   10   12   23   42   58   74   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     R     315     R     315     10   13  148     9   10   13   23   33   47   60   72   92  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     E     316     E     316     10   13  148     9   10   10   21   28   39   52   69   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     A     317     A     317     10   13  148     9   10   10   15   28   43   58   76   97  109  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     V     318     V     318     10   13  148     9   10   10   12   12   16   29   43   59   79  116  129  135  140  143  145  147  148  148  148 
LCS_GDT     S     319     S     319     10   13  148     9   10   10   15   33   47   57   72   92  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     R     320     R     320     10   13  148     9   15   20   24   29   43   58   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     R     321     R     321      4   11  148     4    4    4    5    9   18   24   35   63   86   95  118  134  140  143  145  147  148  148  148 
LCS_GDT     G     322     G     322      4    6  148     4    4    4    4    6   13   24   42   57   78   95  121  134  140  143  145  147  148  148  148 
LCS_GDT     I     323     I     323      4    6  148     4    4    4    5   14   22   31   40   49   63   75   92  108  119  135  142  146  148  148  148 
LCS_GDT     G     324     G     324      4    6  148     4    4    5    8   14   26   33   42   53   71   89  102  116  135  141  145  147  148  148  148 
LCS_GDT     L     325     L     325      4    6  148     3    3    5    8   14   26   33   42   52   71   89   99  114  125  140  143  147  148  148  148 
LCS_GDT     V     326     V     326      4    6  148     3    3    6    9   18   26   37   57   72   88  100  121  134  140  143  145  147  148  148  148 
LCS_GDT     S     327     S     327      4    6  148     3    4    6    9   19   26   38   57   72   88  100  116  134  140  143  145  147  148  148  148 
LCS_GDT     T     328     T     328      4    5  148     3    4    6   10   24   41   56   67   91  109  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     S     329     S     329      4    5  148     3    4    4    4    5    9   16   26   38   63   83   97  122  136  143  145  147  148  148  148 
LCS_GDT     D     330     D     330      4    5  148     3   12   17   31   37   47   58   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     K     331     K     331      4    5  148     3    4   12   20   29   46   58   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     V     332     V     332      4   28  148     3    4    4    5   16   34   48   61   82  107  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     D     333     D     333     10   28  148     9    9   13   23   33   47   60   72   89  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     A     334     A     334     10   28  148     9    9   12   20   33   47   60   72   91  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     D     335     D     335     10   28  148     9    9   12   19   32   47   60   72   91  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     L     336     L     336     10   28  148     9    9   13   23   33   47   60   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     L     337     L     337     10   28  148     9    9   16   23   33   47   60   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     R     338     R     338     10   28  148     9    9   12   20   32   47   60   73   95  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     R     339     R     339     10   28  148     9    9   12   19   32   47   60   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     L     340     L     340     10   28  148     9    9   16   20   29   47   60   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     I     341     I     341     10   28  148     9    9   12   18   27   44   58   73   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     G     342     G     342     17   28  148     3    6   16   23   33   47   60   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     D     343     D     343     17   28  148     3   19   25   31   37   44   58   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     E     344     E     344     17   28  148    15   20   25   31   37   44   58   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     S     345     S     345     17   28  148    15   20   25   31   37   44   58   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     L     346     L     346     17   28  148    15   20   25   31   37   44   58   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     R     347     R     347     17   28  148    15   20   25   31   37   47   60   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     T     348     T     348     17   28  148    15   20   25   31   37   47   60   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     A     349     A     349     17   28  148    15   20   25   31   37   47   60   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     A     350     A     350     17   28  148    15   20   25   31   37   47   60   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     R     351     R     351     17   28  148    15   20   25   31   37   47   60   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     E     352     E     352     17   28  148    15   20   25   31   37   47   60   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     V     353     V     353     17   28  148    15   20   25   31   37   47   60   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     R     354     R     354     17   28  148    15   20   25   31   37   47   60   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     E     355     E     355     17   28  148    15   20   25   31   37   47   60   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     E     356     E     356     17   28  148    15   20   25   31   37   47   60   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     M     357     M     357     17   28  148    14   20   25   31   37   47   60   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     V     358     V     358     17   28  148    10   20   25   31   37   47   60   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_GDT     A     359     A     359     17   28  148     3   11   25   31   37   44   60   76   97  110  119  129  135  140  143  145  147  148  148  148 
LCS_AVERAGE  LCS_A:  38.61  (   5.49   10.34  100.00 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     15     20     25     31     37     47     60     76     97    110    119    129    135    140    143    145    147    148    148    148 
GDT PERCENT_CA  10.14  13.51  16.89  20.95  25.00  31.76  40.54  51.35  65.54  74.32  80.41  87.16  91.22  94.59  96.62  97.97  99.32 100.00 100.00 100.00
GDT RMS_LOCAL    0.25   0.55   0.75   1.10   1.44   2.07   2.48   3.07   3.37   3.63   3.80   4.07   4.19   4.37   4.46   4.55   4.65   4.71   4.71   4.71
GDT RMS_ALL_CA   5.49   5.52   5.57   5.49   5.44   6.33   5.58   4.85   4.86   4.80   4.77   4.73   4.73   4.71   4.71   4.71   4.71   4.71   4.71   4.71

#      Molecule1      Molecule2       DISTANCE
LGA    E     212      E     212          6.242
LGA    V     213      V     213          5.219
LGA    A     214      A     214          4.425
LGA    I     215      I     215          4.289
LGA    T     216      T     216          1.478
LGA    M     217      M     217          3.595
LGA    G     218      G     218          4.024
LGA    T     219      T     219          1.877
LGA    I     220      I     220          5.724
LGA    E     221      E     221          5.980
LGA    L     222      L     222          3.962
LGA    Q     223      Q     223          6.160
LGA    A     224      A     224          5.008
LGA    F     225      F     225          4.688
LGA    G     226      G     226          6.885
LGA    I     227      I     227          4.930
LGA    G     228      G     228          4.510
LGA    A     229      A     229          4.433
LGA    V     230      V     230          1.955
LGA    E     231      E     231          1.111
LGA    P     232      P     232          1.243
LGA    I     233      I     233          1.643
LGA    I     234      I     234          2.163
LGA    A     235      A     235          2.789
LGA    A     236      A     236          3.276
LGA    A     237      A     237          3.939
LGA    G     238      G     238          4.406
LGA    E     239      E     239          4.409
LGA    V     240      V     240          3.973
LGA    D     241      D     241          3.397
LGA    A     242      A     242          2.711
LGA    D     243      D     243          3.669
LGA    F     244      F     244          3.671
LGA    V     245      V     245          4.755
LGA    L     246      L     246          4.981
LGA    A     247      A     247          3.678
LGA    L     248      L     248          3.839
LGA    G     249      G     249          4.212
LGA    D     250      D     250          5.711
LGA    L     251      L     251          3.925
LGA    D     252      D     252          2.959
LGA    I     253      I     253          2.833
LGA    S     254      S     254          3.494
LGA    P     255      P     255          3.996
LGA    L     256      L     256          3.648
LGA    G     257      G     257          5.104
LGA    T     258      T     258          3.855
LGA    L     259      L     259          4.959
LGA    P     260      P     260          3.197
LGA    R     261      R     261          3.151
LGA    N     262      N     262          2.883
LGA    V     263      V     263          1.777
LGA    R     264      R     264          2.301
LGA    A     265      A     265          2.474
LGA    V     266      V     266          2.270
LGA    G     267      G     267          1.926
LGA    W     268      W     268          2.092
LGA    T     269      T     269          1.253
LGA    P     270      P     270          4.334
LGA    L     271      L     271          4.684
LGA    H     272      H     272          4.669
LGA    T     273      T     273          5.446
LGA    L     274      L     274          3.556
LGA    L     275      L     275          2.889
LGA    R     276      R     276          4.204
LGA    T     277      T     277          3.697
LGA    C     278      C     278          2.647
LGA    T     279      T     279          6.056
LGA    A     280      A     280          5.873
LGA    V     281      V     281          3.727
LGA    V     282      V     282          4.848
LGA    H     283      H     283          3.750
LGA    H     284      H     284          3.829
LGA    G     285      G     285          7.071
LGA    G     286      G     286          3.755
LGA    G     287      G     287          2.733
LGA    G     288      G     288          5.847
LGA    T     289      T     289          4.432
LGA    V     290      V     290          6.703
LGA    M     291      M     291          7.142
LGA    T     292      T     292          3.409
LGA    A     293      A     293          6.504
LGA    I     294      I     294          9.565
LGA    D     295      D     295          6.702
LGA    A     296      A     296          4.287
LGA    G     297      G     297          6.339
LGA    I     298      I     298          5.924
LGA    P     299      P     299          6.335
LGA    Q     300      Q     300          1.928
LGA    L     301      L     301          4.307
LGA    L     302      L     302          3.104
LGA    A     303      A     303          3.706
LGA    P     304      P     304          3.551
LGA    D     305      D     305          4.804
LGA    P     306      P     306          7.801
LGA    R     307      R     307          9.455
LGA    D     308      D     308          8.368
LGA    Q     309      Q     309          5.976
LGA    F     310      F     310          4.013
LGA    Q     311      Q     311          5.123
LGA    H     312      H     312          6.417
LGA    T     313      T     313          4.405
LGA    A     314      A     314          4.022
LGA    R     315      R     315          5.852
LGA    E     316      E     316          4.494
LGA    A     317      A     317          3.768
LGA    V     318      V     318          6.215
LGA    S     319      S     319          5.658
LGA    R     320      R     320          3.797
LGA    R     321      R     321          6.645
LGA    G     322      G     322          7.230
LGA    I     323      I     323         10.356
LGA    G     324      G     324          8.917
LGA    L     325      L     325          9.721
LGA    V     326      V     326          8.235
LGA    S     327      S     327          8.316
LGA    T     328      T     328          4.817
LGA    S     329      S     329          8.343
LGA    D     330      D     330          2.514
LGA    K     331      K     331          3.441
LGA    V     332      V     332          6.036
LGA    D     333      D     333          5.981
LGA    A     334      A     334          5.847
LGA    D     335      D     335          5.712
LGA    L     336      L     336          3.898
LGA    L     337      L     337          3.396
LGA    R     338      R     338          4.618
LGA    R     339      R     339          3.810
LGA    L     340      L     340          2.889
LGA    I     341      I     341          4.356
LGA    G     342      G     342          2.686
LGA    D     343      D     343          3.992
LGA    E     344      E     344          3.394
LGA    S     345      S     345          3.879
LGA    L     346      L     346          3.307
LGA    R     347      R     347          2.892
LGA    T     348      T     348          3.391
LGA    A     349      A     349          3.494
LGA    A     350      A     350          3.086
LGA    R     351      R     351          3.086
LGA    E     352      E     352          3.247
LGA    V     353      V     353          3.229
LGA    R     354      R     354          3.187
LGA    E     355      E     355          3.443
LGA    E     356      E     356          3.567
LGA    M     357      M     357          3.551
LGA    V     358      V     358          3.921
LGA    A     359      A     359          1.857

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  148  148    4.0     76    3.07    45.946    39.394     2.397

LGA_LOCAL      RMSD =  3.071  Number of atoms =   76  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  4.785  Number of atoms =  148 
Std_ALL_ATOMS  RMSD =  4.706  (standard rmsd on all 148 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.370421 * X  +  -0.892163 * Y  +  -0.258520 * Z  +  33.150436
  Y_new =  -0.777563 * X  +   0.145583 * Y  +   0.611720 * Z  +  16.639465
  Z_new =  -0.508118 * X  +   0.427610 * Y  +  -0.747640 * Z  +   7.532249 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.622057   -0.519536  [ DEG:   150.2328    -29.7672 ]
  Theta =   0.532999    2.608594  [ DEG:    30.5386    149.4614 ]
  Phi   =  -2.015376    1.126217  [ DEG:  -115.4725     64.5275 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0333TS393_2-D2                               
REMARK     2: T0333_D2.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0333TS393_2-D2.T0333_D2.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  148  148   4.0   76   3.07  39.394     4.71
REMARK  ---------------------------------------------------------- 
MOLECULE T0333TS393_2-D2
PFRMAT TS
TARGET T0333
MODEL 2
PARENT N/A
ATOM    212  CA  GLU   212      31.274  12.248 -12.172  1.00 25.00           C
ATOM    213  CA  VAL   213      31.304  13.939  -8.799  1.00 25.00           C
ATOM    214  CA  ALA   214      31.162  13.425  -5.043  1.00 25.00           C
ATOM    215  CA  ILE   215      28.558  12.443  -2.443  1.00 25.00           C
ATOM    216  CA  THR   216      25.743  13.596  -0.098  1.00 25.00           C
ATOM    217  CA  MET   217      28.023  15.456   2.253  1.00 25.00           C
ATOM    218  CA  GLY   218      28.606  12.865   4.970  1.00 25.00           C
ATOM    219  CA  THR   219      25.202  14.007   6.334  1.00 25.00           C
ATOM    220  CA  ILE   220      23.036  16.013   3.935  1.00 25.00           C
ATOM    221  CA  GLU   221      20.045  13.692   4.497  1.00 25.00           C
ATOM    222  CA  LEU   222      16.721  15.334   3.644  1.00 25.00           C
ATOM    223  CA  GLN   223      14.072  17.451   5.395  1.00 25.00           C
ATOM    224  CA  ALA   224      15.644  20.632   4.148  1.00 25.00           C
ATOM    225  CA  PHE   225      16.041  19.936   0.451  1.00 25.00           C
ATOM    226  CA  GLY   226      12.216  20.004   0.197  1.00 25.00           C
ATOM    227  CA  ILE   227      12.513  16.281   0.030  1.00 25.00           C
ATOM    228  CA  GLY   228      11.295  16.783  -3.565  1.00 25.00           C
ATOM    229  CA  ALA   229      14.473  18.753  -4.394  1.00 25.00           C
ATOM    230  CA  VAL   230      16.624  15.962  -2.893  1.00 25.00           C
ATOM    231  CA  GLU   231      14.734  13.356  -4.969  1.00 25.00           C
ATOM    232  CA  PRO   232      15.276  15.447  -8.131  1.00 25.00           C
ATOM    233  CA  ILE   233      19.013  15.721  -7.340  1.00 25.00           C
ATOM    234  CA  ILE   234      19.209  11.930  -6.835  1.00 25.00           C
ATOM    235  CA  ALA   235      17.439  11.367 -10.184  1.00 25.00           C
ATOM    236  CA  ALA   236      19.893  13.749 -11.909  1.00 25.00           C
ATOM    237  CA  ALA   237      22.845  11.878 -10.343  1.00 25.00           C
ATOM    238  CA  GLY   238      21.402   8.542 -11.545  1.00 25.00           C
ATOM    239  CA  GLU   239      20.986   9.966 -15.076  1.00 25.00           C
ATOM    240  CA  VAL   240      23.983  11.258 -17.015  1.00 25.00           C
ATOM    241  CA  ASP   241      25.202   7.684 -16.681  1.00 25.00           C
ATOM    242  CA  ALA   242      25.568   5.944 -13.305  1.00 25.00           C
ATOM    243  CA  ASP   243      25.583   6.557  -9.564  1.00 25.00           C
ATOM    244  CA  PHE   244      25.255   7.723  -5.963  1.00 25.00           C
ATOM    245  CA  VAL   245      24.907   8.910  -2.394  1.00 25.00           C
ATOM    246  CA  LEU   246      26.886   8.793   0.822  1.00 25.00           C
ATOM    247  CA  ALA   247      23.766   9.866   2.650  1.00 25.00           C
ATOM    248  CA  LEU   248      25.346   8.815   5.966  1.00 25.00           C
ATOM    249  CA  GLY   249      22.529   9.498   8.448  1.00 25.00           C
ATOM    250  CA  ASP   250      19.242   8.306   6.912  1.00 25.00           C
ATOM    251  CA  LEU   251      18.579   4.548   7.184  1.00 25.00           C
ATOM    252  CA  ASP   252      14.919   5.605   7.419  1.00 25.00           C
ATOM    253  CA  ILE   253      15.025   6.700   3.752  1.00 25.00           C
ATOM    254  CA  SER   254      11.395   6.160   2.656  1.00 25.00           C
ATOM    255  CA  PRO   255      12.525   5.770  -0.982  1.00 25.00           C
ATOM    256  CA  LEU   256      16.115   5.105  -2.178  1.00 25.00           C
ATOM    257  CA  GLY   257      14.638   4.547  -5.644  1.00 25.00           C
ATOM    258  CA  THR   258      12.252   2.385  -7.656  1.00 25.00           C
ATOM    259  CA  LEU   259      14.763   2.477 -10.539  1.00 25.00           C
ATOM    260  CA  PRO   260      17.549   0.414  -9.038  1.00 25.00           C
ATOM    261  CA  ARG   261      20.557  -1.730  -9.932  1.00 25.00           C
ATOM    262  CA  ASN   262      22.717   1.378  -9.505  1.00 25.00           C
ATOM    263  CA  VAL   263      21.695   3.508  -6.507  1.00 25.00           C
ATOM    264  CA  ARG   264      24.017   3.187  -3.544  1.00 25.00           C
ATOM    265  CA  ALA   265      24.708   4.226   0.001  1.00 25.00           C
ATOM    266  CA  VAL   266      27.733   3.443   2.107  1.00 25.00           C
ATOM    267  CA  GLY   267      26.899   3.948   5.761  1.00 25.00           C
ATOM    268  CA  TRP   268      30.609   4.618   6.070  1.00 25.00           C
ATOM    269  CA  THR   269      33.065   5.861   3.403  1.00 25.00           C
ATOM    270  CA  PRO   270      35.969   6.956   1.272  1.00 25.00           C
ATOM    271  CA  LEU   271      37.747   9.713  -0.570  1.00 25.00           C
ATOM    272  CA  HIS   272      40.490  10.009  -3.227  1.00 25.00           C
ATOM    273  CA  THR   273      39.345   6.715  -4.810  1.00 25.00           C
ATOM    274  CA  LEU   274      35.726   7.969  -4.861  1.00 25.00           C
ATOM    275  CA  LEU   275      36.855  11.232  -6.517  1.00 25.00           C
ATOM    276  CA  ARG   276      38.421   9.153  -9.240  1.00 25.00           C
ATOM    277  CA  THR   277      34.814   8.214 -10.020  1.00 25.00           C
ATOM    278  CA  CYS   278      31.814   7.179  -7.916  1.00 25.00           C
ATOM    279  CA  THR   279      29.173   9.847  -8.255  1.00 25.00           C
ATOM    280  CA  ALA   280      27.007  12.774  -7.382  1.00 25.00           C
ATOM    281  CA  VAL   281      27.116  16.283  -5.995  1.00 25.00           C
ATOM    282  CA  VAL   282      27.647  17.593  -2.447  1.00 25.00           C
ATOM    283  CA  HIS   283      24.839  18.533  -0.147  1.00 25.00           C
ATOM    284  CA  HIS   284      24.742  21.441   2.316  1.00 25.00           C
ATOM    285  CA  GLY   285      24.571  22.018   6.037  1.00 25.00           C
ATOM    286  CA  GLY   286      27.829  20.268   6.711  1.00 25.00           C
ATOM    287  CA  GLY   287      29.326  23.136   4.740  1.00 25.00           C
ATOM    288  CA  GLY   288      29.455  22.475   0.970  1.00 25.00           C
ATOM    289  CA  THR   289      33.094  23.665   0.862  1.00 25.00           C
ATOM    290  CA  VAL   290      33.961  21.360   3.795  1.00 25.00           C
ATOM    291  CA  MET   291      32.282  18.417   2.011  1.00 25.00           C
ATOM    292  CA  THR   292      34.260  19.190  -1.177  1.00 25.00           C
ATOM    293  CA  ALA   293      37.512  19.311   0.840  1.00 25.00           C
ATOM    294  CA  ILE   294      36.667  15.943   2.453  1.00 25.00           C
ATOM    295  CA  ASP   295      35.969  14.438  -0.999  1.00 25.00           C
ATOM    296  CA  ALA   296      39.318  15.776  -2.287  1.00 25.00           C
ATOM    297  CA  GLY   297      38.767  19.105  -4.083  1.00 25.00           C
ATOM    298  CA  ILE   298      35.418  17.531  -5.138  1.00 25.00           C
ATOM    299  CA  PRO   299      31.789  18.351  -5.772  1.00 25.00           C
ATOM    300  CA  GLN   300      29.664  19.931  -8.464  1.00 25.00           C
ATOM    301  CA  LEU   301      28.363  22.022  -5.554  1.00 25.00           C
ATOM    302  CA  LEU   302      25.215  22.340  -3.472  1.00 25.00           C
ATOM    303  CA  ALA   303      21.610  22.694  -2.393  1.00 25.00           C
ATOM    304  CA  PRO   304      22.830  25.618  -0.234  1.00 25.00           C
ATOM    305  CA  ASP   305      19.652  26.771   1.461  1.00 25.00           C
ATOM    306  CA  PRO   306      21.302  29.742   3.136  1.00 25.00           C
ATOM    307  CA  ARG   307      23.252  32.904   3.785  1.00 25.00           C
ATOM    308  CA  ASP   308      26.691  31.506   4.590  1.00 25.00           C
ATOM    309  CA  GLN   309      26.704  28.448   2.382  1.00 25.00           C
ATOM    310  CA  PHE   310      26.566  31.000  -0.387  1.00 25.00           C
ATOM    311  CA  GLN   311      30.380  30.972  -0.041  1.00 25.00           C
ATOM    312  CA  HIS   312      30.567  27.737  -2.081  1.00 25.00           C
ATOM    313  CA  THR   313      28.354  29.291  -4.795  1.00 25.00           C
ATOM    314  CA  ALA   314      30.603  32.390  -4.887  1.00 25.00           C
ATOM    315  CA  ARG   315      33.701  30.162  -5.216  1.00 25.00           C
ATOM    316  CA  GLU   316      32.043  28.240  -8.084  1.00 25.00           C
ATOM    317  CA  ALA   317      31.188  31.538  -9.833  1.00 25.00           C
ATOM    318  CA  VAL   318      34.809  32.718  -9.434  1.00 25.00           C
ATOM    319  CA  SER   319      36.074  29.413 -10.899  1.00 25.00           C
ATOM    320  CA  ARG   320      33.355  28.157 -13.299  1.00 25.00           C
ATOM    321  CA  ARG   321      29.865  26.607 -12.923  1.00 25.00           C
ATOM    322  CA  GLY   322      28.496  24.545 -10.067  1.00 25.00           C
ATOM    323  CA  ILE   323      25.871  26.297  -8.030  1.00 25.00           C
ATOM    324  CA  GLY   324      23.305  23.504  -7.984  1.00 25.00           C
ATOM    325  CA  LEU   325      19.999  24.362  -6.369  1.00 25.00           C
ATOM    326  CA  VAL   326      19.934  27.401  -4.095  1.00 25.00           C
ATOM    327  CA  SER   327      16.665  26.014  -2.682  1.00 25.00           C
ATOM    328  CA  THR   328      15.258  26.299  -6.232  1.00 25.00           C
ATOM    329  CA  SER   329      12.169  25.154  -8.238  1.00 25.00           C
ATOM    330  CA  ASP   330      14.058  21.875  -8.642  1.00 25.00           C
ATOM    331  CA  LYS   331      13.504  22.480 -12.383  1.00 25.00           C
ATOM    332  CA  VAL   332      16.527  24.829 -12.476  1.00 25.00           C
ATOM    333  CA  ASP   333      18.663  22.191 -10.700  1.00 25.00           C
ATOM    334  CA  ALA   334      17.529  19.541 -13.223  1.00 25.00           C
ATOM    335  CA  ASP   335      18.419  21.883 -16.120  1.00 25.00           C
ATOM    336  CA  LEU   336      21.876  22.503 -14.590  1.00 25.00           C
ATOM    337  CA  LEU   337      22.417  18.729 -14.222  1.00 25.00           C
ATOM    338  CA  ARG   338      21.404  18.203 -17.878  1.00 25.00           C
ATOM    339  CA  ARG   339      23.846  20.942 -18.975  1.00 25.00           C
ATOM    340  CA  LEU   340      26.641  19.300 -16.935  1.00 25.00           C
ATOM    341  CA  ILE   341      25.860  15.914 -18.545  1.00 25.00           C
ATOM    342  CA  GLY   342      28.039  16.236 -21.683  1.00 25.00           C
ATOM    343  CA  ASP   343      31.527  15.671 -23.085  1.00 25.00           C
ATOM    344  CA  GLU   344      35.319  15.692 -22.891  1.00 25.00           C
ATOM    345  CA  SER   345      36.133  19.421 -22.579  1.00 25.00           C
ATOM    346  CA  LEU   346      35.001  19.388 -18.921  1.00 25.00           C
ATOM    347  CA  ARG   347      37.198  16.325 -18.243  1.00 25.00           C
ATOM    348  CA  THR   348      40.187  18.077 -19.875  1.00 25.00           C
ATOM    349  CA  ALA   349      39.569  21.186 -17.725  1.00 25.00           C
ATOM    350  CA  ALA   350      39.414  19.008 -14.578  1.00 25.00           C
ATOM    351  CA  ARG   351      42.703  17.310 -15.561  1.00 25.00           C
ATOM    352  CA  GLU   352      44.335  20.731 -16.105  1.00 25.00           C
ATOM    353  CA  VAL   353      43.097  21.896 -12.673  1.00 25.00           C
ATOM    354  CA  ARG   354      44.513  18.724 -11.059  1.00 25.00           C
ATOM    355  CA  GLU   355      47.878  19.316 -12.791  1.00 25.00           C
ATOM    356  CA  GLU   356      47.912  22.936 -11.542  1.00 25.00           C
ATOM    357  CA  MET   357      47.154  21.741  -7.982  1.00 25.00           C
ATOM    358  CA  VAL   358      50.002  19.190  -8.207  1.00 25.00           C
ATOM    359  CA  ALA   359      52.237  22.104  -7.109  1.00 25.00           C
TER
END
