
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  148 (  148),  selected  148 , name T0333TS393_4-D2
# Molecule2: number of CA atoms  148 ( 1087),  selected  148 , name T0333_D2.pdb
# PARAMETERS: T0333TS393_4-D2.T0333_D2.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   148       212 - 359         4.73     4.73
  LCS_AVERAGE:    100.00

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    27       332 - 358         1.93     7.68
  LCS_AVERAGE:     10.39

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    18       341 - 358         1.00     7.45
  LCS_AVERAGE:      5.83

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  148
LCS_GDT     E     212     E     212      3    6  148     0    2    7   17   34   49   58   66   84  105  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     V     213     V     213      4    6  148     4   12   22   30   39   49   63   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     A     214     A     214      4    6  148     3    9   21   26   36   49   63   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     I     215     I     215      4    6  148     3    6   21   26   29   43   60   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     T     216     T     216      4    6  148     3    6   10   14   20   40   53   72   89  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     M     217     M     217      3    6  148     3   17   20   30   37   49   63   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     G     218     G     218      3    5  148     3   15   20   30   37   48   63   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     T     219     T     219      4    5  148     3   18   20   30   37   49   63   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     I     220     I     220      4    5  148     3    4    4    5    6    7   13   18   26   51   71   91  105  117  137  142  145  147  148  148 
LCS_GDT     E     221     E     221      4    5  148     3    4    4    4    6    7   22   28   43   73   84   95  110  128  137  142  145  147  148  148 
LCS_GDT     L     222     L     222      4    5  148    11   17   20   30   37   49   63   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     Q     223     Q     223      3    7  148     3    3    4    9   10   33   38   64   73  102  110  122  130  134  139  142  145  147  148  148 
LCS_GDT     A     224     A     224      3    7  148     3    3    4    9   10   13   21   22   30   66   79   94  111  123  134  139  144  147  148  148 
LCS_GDT     F     225     F     225      8   22  148     4    6   17   27   35   43   57   72   88  105  118  127  130  135  139  142  145  147  148  148 
LCS_GDT     G     226     G     226     10   22  148     4   16   17   27   35   43   57   72   89  106  120  127  130  135  139  142  145  147  148  148 
LCS_GDT     I     227     I     227     13   22  148     4   12   17   27   35   49   63   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     G     228     G     228     13   22  148     4   12   18   30   37   49   63   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     A     229     A     229     13   22  148     4    6   18   27   36   49   63   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     V     230     V     230     13   22  148     8   12   22   30   39   49   63   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     E     231     E     231     13   22  148     8   12   22   30   39   49   63   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     P     232     P     232     13   22  148     8   12   20   30   39   49   63   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     I     233     I     233     13   22  148     8   12   22   30   39   49   63   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     I     234     I     234     13   22  148     8   12   22   30   39   49   63   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     A     235     A     235     13   22  148     8   12   18   29   39   49   63   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     A     236     A     236     13   22  148     8   12   18   29   39   49   63   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     A     237     A     237     13   22  148     8   12   18   29   39   49   63   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     G     238     G     238     13   22  148     8   12   18   29   38   48   63   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     E     239     E     239     13   22  148     7   11   18   29   38   49   63   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     V     240     V     240     13   22  148     4   10   22   29   39   49   63   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     D     241     D     241     13   22  148     4    9   18   29   38   47   58   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     A     242     A     242     13   22  148     4    7   18   27   36   47   58   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     D     243     D     243      5   22  148     4   11   16   25   36   45   58   75   92  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     F     244     F     244      4   22  148     4    7   17   27   37   45   58   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     V     245     V     245      4   22  148     7   11   15   23   31   44   58   72   91  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     L     246     L     246      4   22  148     3    4    6   16   26   42   58   70   91  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     A     247     A     247      3   21  148     3    5   10   17   32   42   58   72   92  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     L     248     L     248      3    8  148     3    5   12   18   24   32   39   52   65   83  100  119  131  134  139  142  145  147  148  148 
LCS_GDT     G     249     G     249      3   12  148     3    4    4    8   23   36   50   64   76   94  111  124  131  134  139  142  145  147  148  148 
LCS_GDT     D     250     D     250      6   12  148     4    6   17   30   39   49   58   72   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     L     251     L     251      6   12  148     4    5    9   15   36   49   58   67   87  105  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     D     252     D     252      6   12  148     4    6   20   30   39   49   58   73   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     I     253     I     253      6   12  148     4    8   22   29   39   49   63   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     S     254     S     254      6   12  148    12   17   22   30   39   49   63   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     P     255     P     255      6   12  148    15   17   22   30   39   49   63   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     L     256     L     256      6   12  148     3   16   22   30   39   49   63   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     G     257     G     257      6   12  148     3   12   19   30   39   49   58   73   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     T     258     T     258      5   12  148     3    4    9   21   36   47   55   69   92  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     L     259     L     259      3   12  148     3    3    5    8   10   41   51   66   91  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     P     260     P     260      3   12  148    10   17   20   23   36   48   63   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     R     261     R     261      3    7  148     3   10   18   29   38   49   63   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     N     262     N     262      3    7  148     3    6   11   27   34   41   50   72   87  103  119  127  131  135  139  142  145  147  148  148 
LCS_GDT     V     263     V     263      4   11  148     3    5   17   27   34   44   58   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     R     264     R     264      4   11  148     3    3   17   27   34   44   58   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     A     265     A     265      4   11  148     3    3    7   12   18   30   48   69   91  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     V     266     V     266      4   11  148     3    4    5    6   15   27   50   61   87  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     G     267     G     267      4   13  148     3    8   14   22   32   43   58   72   91  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     W     268     W     268      4   13  148     3    9   12   20   26   41   52   63   81  101  113  124  131  135  139  142  145  147  148  148 
LCS_GDT     T     269     T     269      4   13  148     4   18   20   30   39   49   63   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     P     270     P     270      8   13  148     3    8   12   20   32   49   58   72   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     L     271     L     271      8   13  148     6    8   12   20   31   49   58   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     H     272     H     272      8   13  148     6    8   12   20   32   49   63   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     T     273     T     273      8   13  148     6    8   16   20   32   48   63   74   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     L     274     L     274      8   13  148     6   10   16   20   35   49   63   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     L     275     L     275      8   13  148     6    8   16   25   38   49   63   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     R     276     R     276      8   13  148     6    8   12   20   31   49   60   75   92  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     T     277     T     277      8   13  148     4    6   13   26   39   49   60   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     C     278     C     278      4   13  148     3   12   22   30   39   49   63   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     T     279     T     279      4   13  148     3    4   18   25   36   47   58   70   86  108  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     A     280     A     280      6   12  148     3    6   10   23   29   43   51   62   74   96  113  127  131  135  139  142  145  147  148  148 
LCS_GDT     V     281     V     281      6   12  148     3    8   18   29   37   49   58   72   91  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     V     282     V     282      6    8  148     4   12   22   30   39   49   58   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     H     283     H     283      6    8  148     4    8   22   30   39   49   58   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     H     284     H     284      6    8  148     4   10   22   30   39   49   58   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     G     285     G     285      6    8  148     3    6   18   27   39   47   58   70   83  108  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     G     286     G     286      3    7  148     4    5   16   22   31   49   63   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     G     287     G     287      3   14  148     3    3    9   21   36   48   63   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     G     288     G     288     12   16  148     5    9   21   30   39   49   58   72   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     T     289     T     289     12   16  148     8    9   14   27   38   49   58   72   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     V     290     V     290     12   16  148     8    9   12   18   37   49   58   72   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     M     291     M     291     12   16  148     8    9   22   30   39   49   58   72   92  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     T     292     T     292     12   16  148     8   12   22   30   39   49   58   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     A     293     A     293     12   16  148     8    9   20   30   39   49   58   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     I     294     I     294     12   16  148     8   12   22   30   39   49   58   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     D     295     D     295     12   16  148     8    9   22   30   39   49   58   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     A     296     A     296     12   16  148     8    9   16   30   39   49   58   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     G     297     G     297     12   16  148     3   12   22   30   39   49   58   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     I     298     I     298     12   16  148     4   12   22   30   39   49   58   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     P     299     P     299     12   16  148     4   10   22   30   39   49   58   72   92  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     Q     300     Q     300      7   16  148     5    6   18   30   39   49   58   69   84  106  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     L     301     L     301      7   16  148     5    8   11   19   25   42   54   66   76   90  105  118  129  135  139  142  145  147  148  148 
LCS_GDT     L     302     L     302      6   16  148     5   10   22   30   39   49   58   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     A     303     A     303      6   16  148     5    5   10   15   24   43   55   66   82  100  119  127  131  135  139  142  145  147  148  148 
LCS_GDT     P     304     P     304      6    9  148     5    5    8   17   27   44   58   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     D     305     D     305      6    9  148     3    4    8   26   29   39   45   54   69   93  111  124  130  135  139  142  145  147  148  148 
LCS_GDT     P     306     P     306      4    9  148     4    4   13   17   27   40   58   70   91  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     R     307     R     307      3    7  148     3    4   10   23   30   42   52   68   72   87  108  122  129  135  139  141  145  147  148  148 
LCS_GDT     D     308     D     308      3    7  148     3    3    5    6   15   22   40   48   64   75   89  112  122  132  138  141  143  147  148  148 
LCS_GDT     Q     309     Q     309      3    7  148     3    4    5    6   30   38   52   68   72   84  101  121  130  134  139  141  145  147  148  148 
LCS_GDT     F     310     F     310     10   11  148     3    4    9   30   37   49   63   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     Q     311     Q     311     10   11  148     4   10   10   10   13   24   58   70   91  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     H     312     H     312     10   11  148     8   10   10   10   11   21   31   41   60   82  103  119  129  134  139  142  145  147  148  148 
LCS_GDT     T     313     T     313     10   11  148     8   10   10   10   26   38   51   66   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     A     314     A     314     10   11  148     8   10   10   20   35   49   63   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     R     315     R     315     10   11  148     8   10   10   10   13   26   43   63   83   97  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     E     316     E     316     10   11  148     8   10   10   18   25   36   51   66   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     A     317     A     317     10   11  148     8   10   15   22   35   49   63   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     V     318     V     318     10   11  148     8   10   10   10   11   11   11   11   56   83  111  125  130  135  139  142  145  147  148  148 
LCS_GDT     S     319     S     319     10   11  148     8   10   10   10   20   34   48   68   84  102  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     R     320     R     320     10   11  148     3   10   10   14   26   45   63   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     R     321     R     321      3    6  148     3    3    4    6    9   22   27   61   87  100  118  127  131  135  139  142  145  147  148  148 
LCS_GDT     G     322     G     322      3    6  148     0    3    4    6   14   16   27   48   64   83   96  121  131  135  139  142  145  147  148  148 
LCS_GDT     I     323     I     323      3    6  148     0    3    5    6   12   17   24   39   50   70   85   97  105  115  132  141  144  147  148  148 
LCS_GDT     G     324     G     324      4    6  148     3    4    4   10   14   21   29   44   53   71   89   96  105  119  133  141  145  147  148  148 
LCS_GDT     L     325     L     325      4    6  148     3    4    4    5   13   21   29   44   67   75   90   99  113  129  137  142  145  147  148  148 
LCS_GDT     V     326     V     326      4    5  148     3    4    7   11   17   31   50   63   75   93  109  124  131  135  139  142  145  147  148  148 
LCS_GDT     S     327     S     327      4    5  148     0    4    4    8   25   31   48   63   76   93  109  124  131  135  139  142  145  147  148  148 
LCS_GDT     T     328     T     328      3    4  148     3    3    7   21   28   37   57   69   89  107  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     S     329     S     329      4    5  148     3    4    5    7    9   15   26   45   63   85   99  115  130  134  139  142  145  147  148  148 
LCS_GDT     D     330     D     330      4    5  148     3    6   19   30   37   49   63   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     K     331     K     331      4    5  148     3   12   20   29   37   49   63   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     V     332     V     332      4   27  148     3   10   21   26   29   36   53   68   89  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     D     333     D     333     10   27  148    10   11   16   30   39   49   58   72   92  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     A     334     A     334     10   27  148    10   11   22   30   39   49   58   74   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     D     335     D     335     10   27  148    10   11   18   28   39   49   60   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     L     336     L     336     10   27  148    10   11   16   29   38   48   63   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     L     337     L     337     10   27  148    10   11   19   29   39   48   63   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     R     338     R     338     10   27  148    10   11   19   26   36   49   63   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     R     339     R     339     10   27  148    10   12   21   30   37   49   63   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     L     340     L     340     10   27  148    10   11   21   30   37   49   63   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     I     341     I     341     18   27  148    10   15   21   30   37   49   63   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     G     342     G     342     18   27  148    10   12   21   30   37   49   63   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     D     343     D     343     18   27  148     4   18   20   27   34   48   54   72   85  104  118  127  131  135  139  142  145  147  148  148 
LCS_GDT     E     344     E     344     18   27  148    15   18   21   27   37   49   63   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     S     345     S     345     18   27  148    15   18   21   27   36   48   63   74   89  108  119  127  131  135  139  142  145  147  148  148 
LCS_GDT     L     346     L     346     18   27  148    15   18   21   30   37   49   63   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     R     347     R     347     18   27  148    15   18   21   30   37   49   63   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     T     348     T     348     18   27  148    15   18   21   30   37   49   63   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     A     349     A     349     18   27  148    15   18   21   30   37   49   63   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     A     350     A     350     18   27  148    15   18   21   30   37   49   63   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     R     351     R     351     18   27  148    15   18   21   30   37   49   63   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     E     352     E     352     18   27  148    15   18   21   30   37   49   63   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     V     353     V     353     18   27  148    15   18   21   30   37   49   63   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     R     354     R     354     18   27  148    15   18   21   30   37   49   63   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     E     355     E     355     18   27  148    15   18   21   30   37   49   63   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     E     356     E     356     18   27  148    15   18   21   30   37   49   63   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     M     357     M     357     18   27  148    15   18   21   30   37   49   63   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     V     358     V     358     18   27  148    11   18   21   30   37   49   63   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_GDT     A     359     A     359     17   26  148     4    6   11   24   37   49   63   75   93  109  120  127  131  135  139  142  145  147  148  148 
LCS_AVERAGE  LCS_A:  38.74  (   5.83   10.39  100.00 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     15     18     22     30     39     49     63     75     93    109    120    127    131    135    139    142    145    147    148    148 
GDT PERCENT_CA  10.14  12.16  14.86  20.27  26.35  33.11  42.57  50.68  62.84  73.65  81.08  85.81  88.51  91.22  93.92  95.95  97.97  99.32 100.00 100.00
GDT RMS_LOCAL    0.28   0.50   1.12   1.36   1.62   2.13   2.50   2.90   3.35   3.62   3.83   3.97   4.13   4.22   4.33   4.48   4.59   4.68   4.73   4.73
GDT RMS_ALL_CA   6.30   6.44   6.06   5.43   6.04   6.35   5.05   4.90   4.75   4.73   4.73   4.73   4.75   4.73   4.73   4.73   4.73   4.73   4.73   4.73

#      Molecule1      Molecule2       DISTANCE
LGA    E     212      E     212          5.440
LGA    V     213      V     213          2.335
LGA    A     214      A     214          3.186
LGA    I     215      I     215          3.831
LGA    T     216      T     216          4.744
LGA    M     217      M     217          2.622
LGA    G     218      G     218          3.371
LGA    T     219      T     219          2.919
LGA    I     220      I     220          9.474
LGA    E     221      E     221          9.223
LGA    L     222      L     222          2.527
LGA    Q     223      Q     223          6.463
LGA    A     224      A     224          8.885
LGA    F     225      F     225          5.197
LGA    G     226      G     226          4.905
LGA    I     227      I     227          3.350
LGA    G     228      G     228          2.964
LGA    A     229      A     229          3.575
LGA    V     230      V     230          1.164
LGA    E     231      E     231          0.274
LGA    P     232      P     232          0.618
LGA    I     233      I     233          0.873
LGA    I     234      I     234          1.495
LGA    A     235      A     235          1.772
LGA    A     236      A     236          1.694
LGA    A     237      A     237          2.437
LGA    G     238      G     238          2.996
LGA    E     239      E     239          2.446
LGA    V     240      V     240          2.731
LGA    D     241      D     241          3.775
LGA    A     242      A     242          3.756
LGA    D     243      D     243          4.232
LGA    F     244      F     244          3.882
LGA    V     245      V     245          4.412
LGA    L     246      L     246          4.828
LGA    A     247      A     247          4.444
LGA    L     248      L     248          8.414
LGA    G     249      G     249          7.759
LGA    D     250      D     250          5.585
LGA    L     251      L     251          6.390
LGA    D     252      D     252          5.104
LGA    I     253      I     253          2.349
LGA    S     254      S     254          3.474
LGA    P     255      P     255          3.485
LGA    L     256      L     256          2.442
LGA    G     257      G     257          4.375
LGA    T     258      T     258          5.358
LGA    L     259      L     259          5.241
LGA    P     260      P     260          3.606
LGA    R     261      R     261          2.794
LGA    N     262      N     262          5.358
LGA    V     263      V     263          3.672
LGA    R     264      R     264          3.581
LGA    A     265      A     265          4.992
LGA    V     266      V     266          5.301
LGA    G     267      G     267          5.231
LGA    W     268      W     268          6.939
LGA    T     269      T     269          2.722
LGA    P     270      P     270          4.917
LGA    L     271      L     271          3.962
LGA    H     272      H     272          2.908
LGA    T     273      T     273          4.236
LGA    L     274      L     274          3.239
LGA    L     275      L     275          2.923
LGA    R     276      R     276          4.145
LGA    T     277      T     277          3.813
LGA    C     278      C     278          1.665
LGA    T     279      T     279          5.633
LGA    A     280      A     280          6.778
LGA    V     281      V     281          5.368
LGA    V     282      V     282          3.915
LGA    H     283      H     283          3.679
LGA    H     284      H     284          4.225
LGA    G     285      G     285          6.169
LGA    G     286      G     286          2.519
LGA    G     287      G     287          2.292
LGA    G     288      G     288          5.154
LGA    T     289      T     289          5.173
LGA    V     290      V     290          5.121
LGA    M     291      M     291          5.555
LGA    T     292      T     292          4.189
LGA    A     293      A     293          3.890
LGA    I     294      I     294          4.827
LGA    D     295      D     295          4.833
LGA    A     296      A     296          4.594
LGA    G     297      G     297          4.322
LGA    I     298      I     298          4.606
LGA    P     299      P     299          5.302
LGA    Q     300      Q     300          6.293
LGA    L     301      L     301          8.116
LGA    L     302      L     302          3.948
LGA    A     303      A     303          6.729
LGA    P     304      P     304          3.981
LGA    D     305      D     305          6.599
LGA    P     306      P     306          5.359
LGA    R     307      R     307          7.257
LGA    D     308      D     308          8.303
LGA    Q     309      Q     309          6.542
LGA    F     310      F     310          2.983
LGA    Q     311      Q     311          5.414
LGA    H     312      H     312          7.999
LGA    T     313      T     313          4.617
LGA    A     314      A     314          2.319
LGA    R     315      R     315          6.333
LGA    E     316      E     316          4.656
LGA    A     317      A     317          2.393
LGA    V     318      V     318          6.440
LGA    S     319      S     319          6.167
LGA    R     320      R     320          3.327
LGA    R     321      R     321          5.648
LGA    G     322      G     322          7.741
LGA    I     323      I     323          9.887
LGA    G     324      G     324          9.571
LGA    L     325      L     325          9.024
LGA    V     326      V     326          7.707
LGA    S     327      S     327          7.324
LGA    T     328      T     328          4.833
LGA    S     329      S     329          7.119
LGA    D     330      D     330          2.825
LGA    K     331      K     331          3.736
LGA    V     332      V     332          4.781
LGA    D     333      D     333          5.249
LGA    A     334      A     334          4.432
LGA    D     335      D     335          3.362
LGA    L     336      L     336          2.593
LGA    L     337      L     337          2.514
LGA    R     338      R     338          2.104
LGA    R     339      R     339          1.888
LGA    L     340      L     340          2.350
LGA    I     341      I     341          2.056
LGA    G     342      G     342          2.775
LGA    D     343      D     343          4.964
LGA    E     344      E     344          3.878
LGA    S     345      S     345          4.404
LGA    L     346      L     346          3.878
LGA    R     347      R     347          3.106
LGA    T     348      T     348          3.342
LGA    A     349      A     349          3.663
LGA    A     350      A     350          3.159
LGA    R     351      R     351          2.697
LGA    E     352      E     352          2.922
LGA    V     353      V     353          3.141
LGA    R     354      R     354          2.586
LGA    E     355      E     355          2.608
LGA    E     356      E     356          2.965
LGA    M     357      M     357          2.788
LGA    V     358      V     358          2.622
LGA    A     359      A     359          0.784

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  148  148    4.0     75    2.90    44.764    38.882     2.504

LGA_LOCAL      RMSD =  2.895  Number of atoms =   75  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  4.786  Number of atoms =  148 
Std_ALL_ATOMS  RMSD =  4.727  (standard rmsd on all 148 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.450827 * X  +  -0.633001 * Y  +  -0.629337 * Z  +  31.356916
  Y_new =  -0.387587 * X  +   0.773938 * Y  +  -0.500795 * Z  +  18.345608
  Z_new =   0.804072 * X  +   0.018151 * Y  +  -0.594255 * Z  +   9.321988 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   3.111058   -0.030534  [ DEG:   178.2505     -1.7495 ]
  Theta =  -0.934113   -2.207480  [ DEG:   -53.5207   -126.4793 ]
  Phi   =  -2.431480    0.710113  [ DEG:  -139.3135     40.6865 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0333TS393_4-D2                               
REMARK     2: T0333_D2.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0333TS393_4-D2.T0333_D2.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  148  148   4.0   75   2.90  38.882     4.73
REMARK  ---------------------------------------------------------- 
MOLECULE T0333TS393_4-D2
PFRMAT TS
TARGET T0333
MODEL 4
PARENT N/A
ATOM    212  CA  GLU   212      30.456  11.359 -12.613  1.00 25.00           C
ATOM    213  CA  VAL   213      28.208  11.905  -9.617  1.00 25.00           C
ATOM    214  CA  ALA   214      26.857  13.102  -6.239  1.00 25.00           C
ATOM    215  CA  ILE   215      23.677  15.171  -5.954  1.00 25.00           C
ATOM    216  CA  THR   216      21.683  14.702  -2.761  1.00 25.00           C
ATOM    217  CA  MET   217      23.593  13.071   0.012  1.00 25.00           C
ATOM    218  CA  GLY   218      26.430  13.536   2.482  1.00 25.00           C
ATOM    219  CA  THR   219      24.066  13.123   5.386  1.00 25.00           C
ATOM    220  CA  ILE   220      22.032  10.059   4.196  1.00 25.00           C
ATOM    221  CA  GLU   221      18.361  10.914   4.020  1.00 25.00           C
ATOM    222  CA  LEU   222      19.286  14.536   3.736  1.00 25.00           C
ATOM    223  CA  GLN   223      17.829  18.021   2.996  1.00 25.00           C
ATOM    224  CA  ALA   224      17.801  19.799  -0.382  1.00 25.00           C
ATOM    225  CA  PHE   225      15.163  22.337   0.797  1.00 25.00           C
ATOM    226  CA  GLY   226      13.278  19.229   1.762  1.00 25.00           C
ATOM    227  CA  ILE   227      13.334  15.502   1.285  1.00 25.00           C
ATOM    228  CA  GLY   228      11.440  15.849  -2.026  1.00 25.00           C
ATOM    229  CA  ALA   229      14.347  17.855  -3.506  1.00 25.00           C
ATOM    230  CA  VAL   230      16.821  15.167  -2.358  1.00 25.00           C
ATOM    231  CA  GLU   231      14.643  12.448  -3.952  1.00 25.00           C
ATOM    232  CA  PRO   232      14.515  14.435  -7.223  1.00 25.00           C
ATOM    233  CA  ILE   233      18.326  14.817  -7.169  1.00 25.00           C
ATOM    234  CA  ILE   234      18.719  11.051  -6.593  1.00 25.00           C
ATOM    235  CA  ALA   235      16.362  10.331  -9.524  1.00 25.00           C
ATOM    236  CA  ALA   236      18.375  12.701 -11.759  1.00 25.00           C
ATOM    237  CA  ALA   237      21.624  10.952 -10.728  1.00 25.00           C
ATOM    238  CA  GLY   238      20.070   7.544 -11.527  1.00 25.00           C
ATOM    239  CA  GLU   239      18.951   8.831 -14.957  1.00 25.00           C
ATOM    240  CA  VAL   240      21.941  11.106 -15.771  1.00 25.00           C
ATOM    241  CA  ASP   241      24.783   8.648 -16.421  1.00 25.00           C
ATOM    242  CA  ALA   242      25.916   8.352 -12.802  1.00 25.00           C
ATOM    243  CA  ASP   243      25.201   7.093  -9.301  1.00 25.00           C
ATOM    244  CA  PHE   244      26.872   6.795  -5.890  1.00 25.00           C
ATOM    245  CA  VAL   245      28.357   8.828  -3.096  1.00 25.00           C
ATOM    246  CA  LEU   246      27.047   9.020   0.410  1.00 25.00           C
ATOM    247  CA  ALA   247      28.953   7.270   3.189  1.00 25.00           C
ATOM    248  CA  LEU   248      29.077   3.818   4.881  1.00 25.00           C
ATOM    249  CA  GLY   249      26.686   1.435   6.598  1.00 25.00           C
ATOM    250  CA  ASP   250      22.920   0.997   6.188  1.00 25.00           C
ATOM    251  CA  LEU   251      19.180   1.580   6.539  1.00 25.00           C
ATOM    252  CA  ASP   252      15.764   1.372   4.878  1.00 25.00           C
ATOM    253  CA  ILE   253      15.528   4.264   2.503  1.00 25.00           C
ATOM    254  CA  SER   254      13.542   2.675  -0.360  1.00 25.00           C
ATOM    255  CA  PRO   255      11.005   5.540  -0.225  1.00 25.00           C
ATOM    256  CA  LEU   256      12.950   6.903  -3.204  1.00 25.00           C
ATOM    257  CA  GLY   257      12.488   3.855  -5.508  1.00 25.00           C
ATOM    258  CA  THR   258      10.799   2.687  -8.658  1.00 25.00           C
ATOM    259  CA  LEU   259      13.654   0.352  -9.505  1.00 25.00           C
ATOM    260  CA  PRO   260      17.385  -0.086 -10.091  1.00 25.00           C
ATOM    261  CA  ARG   261      21.148   0.004 -10.437  1.00 25.00           C
ATOM    262  CA  ASN   262      23.028   0.259  -7.220  1.00 25.00           C
ATOM    263  CA  VAL   263      20.981   2.475  -4.952  1.00 25.00           C
ATOM    264  CA  ARG   264      22.869   1.129  -1.937  1.00 25.00           C
ATOM    265  CA  ALA   265      23.831  -1.013   1.084  1.00 25.00           C
ATOM    266  CA  VAL   266      26.624  -1.128   3.726  1.00 25.00           C
ATOM    267  CA  GLY   267      30.396  -0.782   3.396  1.00 25.00           C
ATOM    268  CA  TRP   268      33.726   0.988   3.904  1.00 25.00           C
ATOM    269  CA  THR   269      33.534   4.569   2.652  1.00 25.00           C
ATOM    270  CA  PRO   270      37.183   5.678   2.933  1.00 25.00           C
ATOM    271  CA  LEU   271      36.791   8.915   1.032  1.00 25.00           C
ATOM    272  CA  HIS   272      40.002  10.300  -0.529  1.00 25.00           C
ATOM    273  CA  THR   273      39.885   7.590  -3.233  1.00 25.00           C
ATOM    274  CA  LEU   274      36.225   8.447  -3.968  1.00 25.00           C
ATOM    275  CA  LEU   275      37.124  12.159  -4.244  1.00 25.00           C
ATOM    276  CA  ARG   276      39.769  11.445  -6.867  1.00 25.00           C
ATOM    277  CA  THR   277      37.218   9.293  -8.703  1.00 25.00           C
ATOM    278  CA  CYS   278      33.470   9.860  -8.085  1.00 25.00           C
ATOM    279  CA  THR   279      32.774  13.532  -7.614  1.00 25.00           C
ATOM    280  CA  ALA   280      31.916  12.292  -4.127  1.00 25.00           C
ATOM    281  CA  VAL   281      29.872  15.013  -2.346  1.00 25.00           C
ATOM    282  CA  VAL   282      26.923  17.259  -3.193  1.00 25.00           C
ATOM    283  CA  HIS   283      24.717  17.979  -0.148  1.00 25.00           C
ATOM    284  CA  HIS   284      22.559  19.787   2.411  1.00 25.00           C
ATOM    285  CA  GLY   285      24.588  21.715   5.007  1.00 25.00           C
ATOM    286  CA  GLY   286      27.909  23.008   3.804  1.00 25.00           C
ATOM    287  CA  GLY   287      29.873  19.978   4.929  1.00 25.00           C
ATOM    288  CA  GLY   288      32.415  17.418   6.216  1.00 25.00           C
ATOM    289  CA  THR   289      32.013  15.369   3.006  1.00 25.00           C
ATOM    290  CA  VAL   290      32.549  18.520   0.897  1.00 25.00           C
ATOM    291  CA  MET   291      35.703  19.357   2.903  1.00 25.00           C
ATOM    292  CA  THR   292      37.010  15.795   2.378  1.00 25.00           C
ATOM    293  CA  ALA   293      36.340  16.077  -1.382  1.00 25.00           C
ATOM    294  CA  ILE   294      38.204  19.421  -1.487  1.00 25.00           C
ATOM    295  CA  ASP   295      41.164  17.859   0.373  1.00 25.00           C
ATOM    296  CA  ALA   296      41.210  14.938  -2.105  1.00 25.00           C
ATOM    297  CA  GLY   297      39.825  16.678  -5.226  1.00 25.00           C
ATOM    298  CA  ILE   298      36.280  17.153  -6.316  1.00 25.00           C
ATOM    299  CA  PRO   299      33.070  19.149  -6.681  1.00 25.00           C
ATOM    300  CA  GLN   300      31.810  20.233  -3.273  1.00 25.00           C
ATOM    301  CA  LEU   301      28.691  21.119  -1.264  1.00 25.00           C
ATOM    302  CA  LEU   302      25.252  22.105  -2.523  1.00 25.00           C
ATOM    303  CA  ALA   303      24.127  24.138   0.484  1.00 25.00           C
ATOM    304  CA  PRO   304      21.881  26.617  -1.271  1.00 25.00           C
ATOM    305  CA  ASP   305      19.122  29.109  -1.940  1.00 25.00           C
ATOM    306  CA  PRO   306      19.037  28.957   1.829  1.00 25.00           C
ATOM    307  CA  ARG   307      21.684  31.654   2.394  1.00 25.00           C
ATOM    308  CA  ASP   308      25.001  33.510   2.727  1.00 25.00           C
ATOM    309  CA  GLN   309      26.294  31.908  -0.490  1.00 25.00           C
ATOM    310  CA  PHE   310      26.902  28.628   1.383  1.00 25.00           C
ATOM    311  CA  GLN   311      30.716  28.362   1.612  1.00 25.00           C
ATOM    312  CA  HIS   312      30.739  25.862  -1.290  1.00 25.00           C
ATOM    313  CA  THR   313      28.559  28.223  -3.374  1.00 25.00           C
ATOM    314  CA  ALA   314      30.934  31.128  -2.611  1.00 25.00           C
ATOM    315  CA  ARG   315      33.932  28.985  -3.656  1.00 25.00           C
ATOM    316  CA  GLU   316      32.157  28.049  -6.918  1.00 25.00           C
ATOM    317  CA  ALA   317      31.417  31.744  -7.604  1.00 25.00           C
ATOM    318  CA  VAL   318      35.090  32.623  -6.967  1.00 25.00           C
ATOM    319  CA  SER   319      36.196  29.849  -9.365  1.00 25.00           C
ATOM    320  CA  ARG   320      33.842  28.473 -12.036  1.00 25.00           C
ATOM    321  CA  ARG   321      32.180  25.180 -11.015  1.00 25.00           C
ATOM    322  CA  GLY   322      29.777  23.366  -8.627  1.00 25.00           C
ATOM    323  CA  ILE   323      26.723  24.699  -6.780  1.00 25.00           C
ATOM    324  CA  GLY   324      24.067  27.272  -7.640  1.00 25.00           C
ATOM    325  CA  LEU   325      20.429  26.095  -7.609  1.00 25.00           C
ATOM    326  CA  VAL   326      19.781  23.708  -4.753  1.00 25.00           C
ATOM    327  CA  SER   327      15.981  23.773  -4.697  1.00 25.00           C
ATOM    328  CA  THR   328      15.410  26.294  -7.495  1.00 25.00           C
ATOM    329  CA  SER   329      13.106  23.604  -8.920  1.00 25.00           C
ATOM    330  CA  ASP   330      15.333  20.566  -9.218  1.00 25.00           C
ATOM    331  CA  LYS   331      14.662  20.185 -12.969  1.00 25.00           C
ATOM    332  CA  VAL   332      17.166  22.982 -13.726  1.00 25.00           C
ATOM    333  CA  ASP   333      19.781  21.276 -11.510  1.00 25.00           C
ATOM    334  CA  ALA   334      19.183  17.954 -13.320  1.00 25.00           C
ATOM    335  CA  ASP   335      19.590  19.698 -16.705  1.00 25.00           C
ATOM    336  CA  LEU   336      22.860  21.297 -15.516  1.00 25.00           C
ATOM    337  CA  LEU   337      24.132  17.881 -14.342  1.00 25.00           C
ATOM    338  CA  ARG   338      23.233  16.352 -17.735  1.00 25.00           C
ATOM    339  CA  ARG   339      25.088  19.182 -19.530  1.00 25.00           C
ATOM    340  CA  LEU   340      28.155  18.612 -17.310  1.00 25.00           C
ATOM    341  CA  ILE   341      28.051  14.863 -18.085  1.00 25.00           C
ATOM    342  CA  GLY   342      27.664  14.726 -21.819  1.00 25.00           C
ATOM    343  CA  ASP   343      31.235  14.356 -22.964  1.00 25.00           C
ATOM    344  CA  GLU   344      34.856  15.377 -23.337  1.00 25.00           C
ATOM    345  CA  SER   345      35.427  19.158 -23.128  1.00 25.00           C
ATOM    346  CA  LEU   346      33.936  19.213 -19.601  1.00 25.00           C
ATOM    347  CA  ARG   347      36.221  16.320 -18.564  1.00 25.00           C
ATOM    348  CA  THR   348      39.257  18.177 -19.980  1.00 25.00           C
ATOM    349  CA  ALA   349      38.255  21.332 -18.053  1.00 25.00           C
ATOM    350  CA  ALA   350      37.906  19.286 -14.835  1.00 25.00           C
ATOM    351  CA  ARG   351      41.366  17.749 -15.407  1.00 25.00           C
ATOM    352  CA  GLU   352      42.852  21.236 -15.955  1.00 25.00           C
ATOM    353  CA  VAL   353      41.214  22.469 -12.721  1.00 25.00           C
ATOM    354  CA  ARG   354      42.635  19.461 -10.825  1.00 25.00           C
ATOM    355  CA  GLU   355      46.118  20.179 -12.246  1.00 25.00           C
ATOM    356  CA  GLU   356      45.825  23.845 -11.177  1.00 25.00           C
ATOM    357  CA  MET   357      44.782  22.761  -7.656  1.00 25.00           C
ATOM    358  CA  VAL   358      47.774  20.378  -7.476  1.00 25.00           C
ATOM    359  CA  ALA   359      50.384  22.383  -5.610  1.00 25.00           C
TER
END
