
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  148 (  148),  selected  148 , name T0333TS393_5-D2
# Molecule2: number of CA atoms  148 ( 1087),  selected  148 , name T0333_D2.pdb
# PARAMETERS: T0333TS393_5-D2.T0333_D2.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   148       212 - 359         4.38     4.38
  LCS_AVERAGE:    100.00

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    28       332 - 359         1.83     6.34
  LCS_AVERAGE:     12.15

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    17       343 - 359         0.94     5.82
  LCS_AVERAGE:      5.58

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  148
LCS_GDT     E     212     E     212      4    6  148     3   10   22   36   46   66   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     V     213     V     213      4    6  148     5   11   22   36   46   66   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     A     214     A     214      4    6  148     3    9   22   36   46   66   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     I     215     I     215      4    6  148     3    7   11   14   36   48   66   88  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     T     216     T     216      4    6  148     0    3   12   22   36   55   74   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     M     217     M     217      3    6  148     2    8   21   33   46   66   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     G     218     G     218      4    5  148     0   13   18   22   34   53   72   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     T     219     T     219      4    5  148     3    8   21   32   46   66   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     I     220     I     220      4   10  148     3    4   18   26   41   60   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     E     221     E     221      4   10  148     3    4   11   12   16   21   40   71   94  111  122  130  136  138  142  144  146  146  147  148 
LCS_GDT     L     222     L     222      4   10  148     3    4   21   33   44   57   69   88  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     Q     223     Q     223      4   20  148     3    4   16   26   43   65   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     A     224     A     224      4   20  148     3    8   18   32   46   66   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     F     225     F     225      4   21  148     3    4    6   22   41   66   78   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     G     226     G     226      6   22  148     3   14   17   25   40   65   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     I     227     I     227     13   23  148     4   11   21   33   46   66   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     G     228     G     228     13   23  148     4   11   22   33   46   66   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     A     229     A     229     13   23  148     3    6   16   30   46   66   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     V     230     V     230     13   25  148     8   13   26   36   46   66   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     E     231     E     231     13   25  148     8   16   26   36   46   66   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     P     232     P     232     13   25  148     8   16   26   36   46   66   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     I     233     I     233     13   25  148     8   11   26   36   46   66   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     I     234     I     234     13   25  148     8   13   26   36   46   66   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     A     235     A     235     13   25  148     8   11   26   36   46   66   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     A     236     A     236     13   25  148     8   11   26   36   46   66   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     A     237     A     237     13   25  148     8   11   22   36   46   66   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     G     238     G     238     13   25  148     8   11   22   33   46   66   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     E     239     E     239     13   25  148     4   10   22   36   46   66   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     V     240     V     240     12   25  148     4    8   21   36   46   66   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     D     241     D     241     12   25  148     3    9   21   33   46   66   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     A     242     A     242      6   25  148     3    7   14   31   45   57   76   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     D     243     D     243      6   25  148     3    7   16   27   45   57   76   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     F     244     F     244      6   25  148     3    6   14   33   45   61   78   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     V     245     V     245      6   25  148     3    7   14   25   41   55   74   90  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     L     246     L     246      5   25  148     3    4    7   14   27   48   71   88  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     A     247     A     247      5   25  148     3   11   22   33   45   66   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     L     248     L     248      5   25  148     3    8   15   20   42   57   76   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     G     249     G     249      5   25  148     3    4   21   33   42   56   68   86  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     D     250     D     250      4   25  148     3    5   11   18   34   48   66   87  105  115  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     L     251     L     251      4   25  148     3    7   21   33   44   57   76   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     D     252     D     252      5   25  148     3   11   22   33   45   66   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     I     253     I     253      5   25  148     4   11   22   33   46   66   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     S     254     S     254      5   25  148     4   11   22   33   46   66   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     P     255     P     255      5   15  148     4    8   21   33   44   60   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     L     256     L     256      5   15  148     4    8   21   33   44   66   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     G     257     G     257      4   15  148     3    5   10   29   39   56   77   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     T     258     T     258      4   15  148     3    4   18   29   41   58   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     L     259     L     259      3   15  148     3    3    9   26   34   50   75   88  105  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     P     260     P     260      6   15  148     4    7   11   18   24   41   60   77  105  116  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     R     261     R     261      6   15  148     4    8   14   29   43   62   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     N     262     N     262      6   15  148     5   16   26   36   46   66   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     V     263     V     263      6   15  148     7   16   26   36   46   66   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     R     264     R     264      6   15  148     3    9   21   36   46   66   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     A     265     A     265      6   15  148     5   16   26   36   46   66   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     V     266     V     266      4   15  148     5   16   26   36   46   66   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     G     267     G     267      4   10  148     3   16   26   36   46   66   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     W     268     W     268      4   12  148     3    4    8   14   32   47   67   87  103  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     T     269     T     269      4   12  148     3    4    8   14   28   47   66   87  102  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     P     270     P     270      8   12  148     3    5   11   14   23   34   50   71   90  105  121  130  136  138  142  144  146  146  147  148 
LCS_GDT     L     271     L     271      8   12  148     5    7   11   14   28   47   66   82   99  116  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     H     272     H     272      8   12  148     5    8   11   22   32   48   72   87  103  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     T     273     T     273      8   12  148     5    8   11   14   23   38   56   79   96  114  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     L     274     L     274      8   12  148     5    8   11   14   28   47   69   87  104  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     L     275     L     275      8   12  148     5    8   19   36   46   66   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     R     276     R     276      8   12  148     4    8   11   14   28   43   69   87  105  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     T     277     T     277      8   12  148     4    8   11   13   20   33   50   68   88  107  124  130  136  138  142  144  146  146  147  148 
LCS_GDT     C     278     C     278      8   12  148     3    8   16   25   40   57   72   89  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     T     279     T     279      4   12  148     3    4   10   20   32   57   68   84  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     A     280     A     280      5   19  148     3    6   14   20   32   51   70   90  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     V     281     V     281      5   19  148     3    4   10   15   22   40   69   90  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     V     282     V     282      5   19  148     3   10   18   33   45   61   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     H     283     H     283      5   19  148     3    7   19   33   45   59   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     H     284     H     284      5   19  148     3   10   22   33   45   60   77   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     G     285     G     285      5   19  148     0    6   10   28   40   57   66   83  102  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     G     286     G     286      4   19  148     0    4    8   17   35   56   75   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     G     287     G     287      4   19  148     3    6   17   26   46   66   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     G     288     G     288     11   19  148     5    9   19   33   45   66   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     T     289     T     289     11   19  148     8    9   18   32   45   65   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     V     290     V     290     11   19  148     8    9   14   28   44   62   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     M     291     M     291     11   19  148     8   10   19   33   45   65   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     T     292     T     292     11   19  148     8   10   21   33   46   66   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     A     293     A     293     11   19  148     8   10   19   33   46   66   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     I     294     I     294     11   19  148     8   10   19   33   44   66   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     D     295     D     295     11   19  148     8   10   21   33   46   66   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     A     296     A     296     11   19  148     8    9   21   33   46   66   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     G     297     G     297     11   19  148     3    9   15   20   40   60   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     I     298     I     298     11   19  148     3    7   14   32   44   57   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     P     299     P     299      4   15  148     3    4   18   33   42   57   68   82  106  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     Q     300     Q     300      4   15  148     3    6   10   18   42   57   68   86  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     L     301     L     301      3   15  148     3   11   21   33   45   57   70   87  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     L     302     L     302      3   15  148     3    7   21   33   45   57   70   87  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     A     303     A     303      4   15  148     3    4    4   11   17   29   41   61   71   89  109  123  131  137  142  144  146  146  147  148 
LCS_GDT     P     304     P     304      4   14  148     3    6   12   22   36   56   72   90  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     D     305     D     305      4    7  148     3    4   14   22   27   55   74   90  106  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     P     306     P     306      4    7  148     3    4    6   27   36   48   61   74   98  112  124  130  136  138  142  144  146  146  147  148 
LCS_GDT     R     307     R     307      4    6  148     3    7   12   18   24   33   41   60   67   77   97  115  123  134  137  141  146  146  147  148 
LCS_GDT     D     308     D     308      4    6  148     3    6   11   27   44   55   61   74   98  112  124  130  136  138  142  144  146  146  147  148 
LCS_GDT     Q     309     Q     309      4   12  148     3    4    6   14   28   34   50   62   84   93  107  122  132  138  142  144  146  146  147  148 
LCS_GDT     F     310     F     310     10   12  148     3    5   17   29   46   55   66   86   99  115  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     Q     311     Q     311     10   12  148     4    9   10   14   22   48   53   74   84   93  117  127  135  138  142  144  146  146  147  148 
LCS_GDT     H     312     H     312     10   12  148     8    9   10   11   16   23   40   61   83  101  116  130  136  138  142  144  146  146  147  148 
LCS_GDT     T     313     T     313     10   12  148    10   14   18   24   41   60   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     A     314     A     314     10   12  148     8    9   14   22   46   66   78   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     R     315     R     315     10   12  148     8    9   10   27   36   54   61   81   99  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     E     316     E     316     10   12  148     8    9   18   20   34   53   75   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     A     317     A     317     10   12  148     8    9   10   20   36   60   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     V     318     V     318     10   12  148     8    9   10   11   11   25   47   71   97  115  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     S     319     S     319     10   12  148     8    9   25   36   46   66   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     R     320     R     320     10   12  148     3    9   11   13   17   24   57   83  104  115  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     R     321     R     321      5    7  148     3    4    5    5    6    7   27   38   53   77   86   94  114  125  136  140  145  146  147  148 
LCS_GDT     G     322     G     322      5    7  148     3    4    5   13   17   19   36   48   70   88  102  120  129  137  142  144  146  146  147  148 
LCS_GDT     I     323     I     323      5    7  148     3    4    5    9   11   18   25   39   46   61   77   89   95  109  124  134  140  144  147  148 
LCS_GDT     G     324     G     324      5    7  148     3    4    5    8   17   25   41   60   70   89  114  120  132  137  142  144  146  146  147  148 
LCS_GDT     L     325     L     325      4    7  148     3    4    4    8   17   25   30   49   68   82   95  110  128  135  142  144  146  146  147  148 
LCS_GDT     V     326     V     326      4    7  148     3    5    5   15   28   42   56   66   80  100  116  129  135  138  142  144  146  146  147  148 
LCS_GDT     S     327     S     327      4    7  148     3    4   11   19   34   43   56   68   84  100  116  129  135  138  142  144  146  146  147  148 
LCS_GDT     T     328     T     328      4    6  148     3    5    7   18   24   48   60   75   87  114  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     S     329     S     329      4    6  148     3    4    5    7   13   19   31   43   70   91  114  123  131  137  142  144  146  146  147  148 
LCS_GDT     D     330     D     330      4    5  148     3   16   18   26   31   62   79   91  105  116  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     K     331     K     331      4    5  148     3    5   18   26   31   47   75   87  105  114  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     V     332     V     332      4   28  148     3    4    8   21   26   42   60   81   94  115  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     D     333     D     333     10   28  148     9   10   13   27   36   56   73   89  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     A     334     A     334     10   28  148     9   10   20   33   46   61   78   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     D     335     D     335     10   28  148     9   10   19   33   46   66   78   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     L     336     L     336     10   28  148     9   10   18   29   46   66   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     L     337     L     337     10   28  148     9   10   18   29   46   66   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     R     338     R     338     10   28  148     9   10   19   33   46   66   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     R     339     R     339     10   28  148     9   10   19   25   46   66   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     L     340     L     340     10   28  148     9   12   19   24   33   55   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     I     341     I     341     10   28  148     9   11   19   25   46   66   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     G     342     G     342     10   28  148     6   10   16   25   46   66   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     D     343     D     343     17   28  148     3    3   17   26   31   43   60   85   97  113  124  130  136  138  142  144  146  146  147  148 
LCS_GDT     E     344     E     344     17   28  148    13   16   19   36   46   66   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     S     345     S     345     17   28  148    13   16   26   36   46   66   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     L     346     L     346     17   28  148    13   16   26   36   46   66   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     R     347     R     347     17   28  148    13   16   26   36   46   66   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     T     348     T     348     17   28  148    13   16   26   36   46   66   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     A     349     A     349     17   28  148    13   16   26   36   46   66   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     A     350     A     350     17   28  148    13   16   26   36   46   66   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     R     351     R     351     17   28  148    13   16   26   36   46   66   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     E     352     E     352     17   28  148    13   16   26   36   46   66   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     V     353     V     353     17   28  148    13   16   26   36   46   66   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     R     354     R     354     17   28  148    13   16   26   36   46   66   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     E     355     E     355     17   28  148    13   16   26   36   46   66   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     E     356     E     356     17   28  148    13   16   26   36   46   66   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     M     357     M     357     17   28  148    13   16   26   36   46   66   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     V     358     V     358     17   28  148    10   16   26   36   46   66   79   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_GDT     A     359     A     359     17   28  148     1    5   10   23   44   66   78   91  107  117  125  130  136  138  142  144  146  146  147  148 
LCS_AVERAGE  LCS_A:  39.24  (   5.58   12.15  100.00 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     13     16     26     36     46     66     79     91    107    117    125    130    136    138    142    144    146    146    147    148 
GDT PERCENT_CA   8.78  10.81  17.57  24.32  31.08  44.59  53.38  61.49  72.30  79.05  84.46  87.84  91.89  93.24  95.95  97.30  98.65  98.65  99.32 100.00
GDT RMS_LOCAL    0.24   0.40   1.00   1.34   1.73   2.22   2.52   2.71   3.07   3.29   3.46   3.58   3.76   3.85   4.02   4.11   4.21   4.21   4.29   4.38
GDT RMS_ALL_CA   5.64   5.47   4.85   4.91   5.00   4.54   4.56   4.49   4.45   4.40   4.42   4.41   4.40   4.39   4.39   4.38   4.38   4.38   4.38   4.38

#      Molecule1      Molecule2       DISTANCE
LGA    E     212      E     212          2.126
LGA    V     213      V     213          2.287
LGA    A     214      A     214          2.666
LGA    I     215      I     215          4.738
LGA    T     216      T     216          4.253
LGA    M     217      M     217          1.473
LGA    G     218      G     218          4.329
LGA    T     219      T     219          1.881
LGA    I     220      I     220          3.270
LGA    E     221      E     221          6.732
LGA    L     222      L     222          4.466
LGA    Q     223      Q     223          2.958
LGA    A     224      A     224          1.820
LGA    F     225      F     225          3.096
LGA    G     226      G     226          3.446
LGA    I     227      I     227          1.908
LGA    G     228      G     228          1.195
LGA    A     229      A     229          2.061
LGA    V     230      V     230          1.325
LGA    E     231      E     231          1.473
LGA    P     232      P     232          1.359
LGA    I     233      I     233          1.760
LGA    I     234      I     234          2.181
LGA    A     235      A     235          2.125
LGA    A     236      A     236          2.010
LGA    A     237      A     237          2.690
LGA    G     238      G     238          3.072
LGA    E     239      E     239          2.472
LGA    V     240      V     240          1.173
LGA    D     241      D     241          2.609
LGA    A     242      A     242          3.986
LGA    D     243      D     243          4.030
LGA    F     244      F     244          3.677
LGA    V     245      V     245          4.493
LGA    L     246      L     246          4.652
LGA    A     247      A     247          2.621
LGA    L     248      L     248          3.943
LGA    G     249      G     249          4.717
LGA    D     250      D     250          4.831
LGA    L     251      L     251          3.927
LGA    D     252      D     252          2.148
LGA    I     253      I     253          1.771
LGA    S     254      S     254          1.826
LGA    P     255      P     255          3.643
LGA    L     256      L     256          2.518
LGA    G     257      G     257          3.834
LGA    T     258      T     258          3.690
LGA    L     259      L     259          4.210
LGA    P     260      P     260          5.198
LGA    R     261      R     261          3.172
LGA    N     262      N     262          1.644
LGA    V     263      V     263          2.078
LGA    R     264      R     264          3.104
LGA    A     265      A     265          2.000
LGA    V     266      V     266          1.677
LGA    G     267      G     267          1.963
LGA    W     268      W     268          5.670
LGA    T     269      T     269          5.916
LGA    P     270      P     270          7.535
LGA    L     271      L     271          5.924
LGA    H     272      H     272          5.327
LGA    T     273      T     273          6.675
LGA    L     274      L     274          5.024
LGA    L     275      L     275          2.781
LGA    R     276      R     276          4.974
LGA    T     277      T     277          6.362
LGA    C     278      C     278          4.630
LGA    T     279      T     279          5.082
LGA    A     280      A     280          4.810
LGA    V     281      V     281          4.822
LGA    V     282      V     282          3.537
LGA    H     283      H     283          3.621
LGA    H     284      H     284          3.818
LGA    G     285      G     285          6.113
LGA    G     286      G     286          4.183
LGA    G     287      G     287          2.623
LGA    G     288      G     288          2.267
LGA    T     289      T     289          2.763
LGA    V     290      V     290          3.084
LGA    M     291      M     291          2.838
LGA    T     292      T     292          1.653
LGA    A     293      A     293          1.875
LGA    I     294      I     294          2.593
LGA    D     295      D     295          2.053
LGA    A     296      A     296          1.408
LGA    G     297      G     297          3.416
LGA    I     298      I     298          3.919
LGA    P     299      P     299          5.459
LGA    Q     300      Q     300          5.004
LGA    L     301      L     301          5.197
LGA    L     302      L     302          5.350
LGA    A     303      A     303          8.868
LGA    P     304      P     304          4.944
LGA    D     305      D     305          4.524
LGA    P     306      P     306          6.885
LGA    R     307      R     307          9.866
LGA    D     308      D     308          6.628
LGA    Q     309      Q     309          8.834
LGA    F     310      F     310          5.592
LGA    Q     311      Q     311          7.742
LGA    H     312      H     312          7.636
LGA    T     313      T     313          3.071
LGA    A     314      A     314          3.399
LGA    R     315      R     315          5.446
LGA    E     316      E     316          3.761
LGA    A     317      A     317          3.983
LGA    V     318      V     318          5.013
LGA    S     319      S     319          2.167
LGA    R     320      R     320          5.552
LGA    R     321      R     321         10.582
LGA    G     322      G     322          8.888
LGA    I     323      I     323         12.078
LGA    G     324      G     324          8.210
LGA    L     325      L     325          9.063
LGA    V     326      V     326          7.870
LGA    S     327      S     327          7.986
LGA    T     328      T     328          5.841
LGA    S     329      S     329          7.248
LGA    D     330      D     330          3.845
LGA    K     331      K     331          4.874
LGA    V     332      V     332          4.917
LGA    D     333      D     333          4.609
LGA    A     334      A     334          3.652
LGA    D     335      D     335          2.581
LGA    L     336      L     336          2.575
LGA    L     337      L     337          2.796
LGA    R     338      R     338          1.879
LGA    R     339      R     339          2.533
LGA    L     340      L     340          3.477
LGA    I     341      I     341          2.830
LGA    G     342      G     342          2.825
LGA    D     343      D     343          5.189
LGA    E     344      E     344          3.045
LGA    S     345      S     345          3.327
LGA    L     346      L     346          3.022
LGA    R     347      R     347          2.573
LGA    T     348      T     348          2.612
LGA    A     349      A     349          2.695
LGA    A     350      A     350          2.525
LGA    R     351      R     351          2.310
LGA    E     352      E     352          2.110
LGA    V     353      V     353          2.222
LGA    R     354      R     354          2.225
LGA    E     355      E     355          2.170
LGA    E     356      E     356          2.072
LGA    M     357      M     357          2.171
LGA    V     358      V     358          2.540
LGA    A     359      A     359          2.948

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  148  148    4.0     91    2.71    48.480    43.028     3.235

LGA_LOCAL      RMSD =  2.713  Number of atoms =   91  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  4.462  Number of atoms =  148 
Std_ALL_ATOMS  RMSD =  4.380  (standard rmsd on all 148 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.124420 * X  +   0.964330 * Y  +  -0.233639 * Z  +  37.304569
  Y_new =   0.988171 * X  +  -0.141703 * Y  +  -0.058641 * Z  +  15.593356
  Z_new =  -0.089657 * X  +  -0.223579 * Y  +  -0.970554 * Z  +   6.218265 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -2.915180    0.226412  [ DEG:  -167.0275     12.9725 ]
  Theta =   0.089777    3.051816  [ DEG:     5.1439    174.8561 ]
  Phi   =   1.445546   -1.696047  [ DEG:    82.8237    -97.1763 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0333TS393_5-D2                               
REMARK     2: T0333_D2.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0333TS393_5-D2.T0333_D2.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  148  148   4.0   91   2.71  43.028     4.38
REMARK  ---------------------------------------------------------- 
MOLECULE T0333TS393_5-D2
PFRMAT TS
TARGET T0333
MODEL 5
PARENT N/A
ATOM    212  CA  GLU   212      31.374   7.626  -9.534  1.00 25.00           C
ATOM    213  CA  VAL   213      29.058  10.109  -7.903  1.00 25.00           C
ATOM    214  CA  ALA   214      29.589  11.379  -4.292  1.00 25.00           C
ATOM    215  CA  ILE   215      28.034  13.612  -1.679  1.00 25.00           C
ATOM    216  CA  THR   216      27.468  16.015   1.141  1.00 25.00           C
ATOM    217  CA  MET   217      24.506  13.677   1.898  1.00 25.00           C
ATOM    218  CA  GLY   218      27.217  11.867   3.887  1.00 25.00           C
ATOM    219  CA  THR   219      25.734  13.557   7.007  1.00 25.00           C
ATOM    220  CA  ILE   220      22.557  15.557   7.228  1.00 25.00           C
ATOM    221  CA  GLU   221      20.727  12.513   6.004  1.00 25.00           C
ATOM    222  CA  LEU   222      16.959  12.796   6.711  1.00 25.00           C
ATOM    223  CA  GLN   223      16.698  16.571   7.181  1.00 25.00           C
ATOM    224  CA  ALA   224      17.948  20.129   6.681  1.00 25.00           C
ATOM    225  CA  PHE   225      18.696  18.875   3.185  1.00 25.00           C
ATOM    226  CA  GLY   226      14.906  18.735   2.828  1.00 25.00           C
ATOM    227  CA  ILE   227      14.532  14.993   2.726  1.00 25.00           C
ATOM    228  CA  GLY   228      12.249  15.477  -0.309  1.00 25.00           C
ATOM    229  CA  ALA   229      14.901  17.671  -1.987  1.00 25.00           C
ATOM    230  CA  VAL   230      17.567  15.005  -1.315  1.00 25.00           C
ATOM    231  CA  GLU   231      15.292  12.315  -2.817  1.00 25.00           C
ATOM    232  CA  PRO   232      14.719  14.495  -5.914  1.00 25.00           C
ATOM    233  CA  ILE   233      18.497  15.006  -6.282  1.00 25.00           C
ATOM    234  CA  ILE   234      19.061  11.228  -6.003  1.00 25.00           C
ATOM    235  CA  ALA   235      16.391  10.608  -8.678  1.00 25.00           C
ATOM    236  CA  ALA   236      18.057  13.180 -10.974  1.00 25.00           C
ATOM    237  CA  ALA   237      21.452  11.486 -10.448  1.00 25.00           C
ATOM    238  CA  GLY   238      19.909   8.081 -11.280  1.00 25.00           C
ATOM    239  CA  GLU   239      18.353   9.536 -14.463  1.00 25.00           C
ATOM    240  CA  VAL   240      21.150  10.133 -16.885  1.00 25.00           C
ATOM    241  CA  ASP   241      23.742   7.380 -16.547  1.00 25.00           C
ATOM    242  CA  ALA   242      24.860   9.545 -13.570  1.00 25.00           C
ATOM    243  CA  ASP   243      24.938   7.714 -10.255  1.00 25.00           C
ATOM    244  CA  PHE   244      24.412   8.739  -6.620  1.00 25.00           C
ATOM    245  CA  VAL   245      25.088   9.133  -2.900  1.00 25.00           C
ATOM    246  CA  LEU   246      27.453   8.474   0.007  1.00 25.00           C
ATOM    247  CA  ALA   247      24.469   7.816   2.179  1.00 25.00           C
ATOM    248  CA  LEU   248      24.749   7.972   5.975  1.00 25.00           C
ATOM    249  CA  GLY   249      23.381   7.604   9.554  1.00 25.00           C
ATOM    250  CA  ASP   250      19.986   7.936   7.971  1.00 25.00           C
ATOM    251  CA  LEU   251      19.586   4.257   8.769  1.00 25.00           C
ATOM    252  CA  ASP   252      16.481   3.952   6.599  1.00 25.00           C
ATOM    253  CA  ILE   253      15.740   5.115   3.080  1.00 25.00           C
ATOM    254  CA  SER   254      13.198   2.285   2.643  1.00 25.00           C
ATOM    255  CA  PRO   255      11.085   4.503   0.346  1.00 25.00           C
ATOM    256  CA  LEU   256      14.069   4.820  -1.878  1.00 25.00           C
ATOM    257  CA  GLY   257      13.194   2.835  -4.965  1.00 25.00           C
ATOM    258  CA  THR   258      13.539  -0.019  -7.456  1.00 25.00           C
ATOM    259  CA  LEU   259      16.266   1.480  -9.682  1.00 25.00           C
ATOM    260  CA  PRO   260      18.553  -1.109  -7.991  1.00 25.00           C
ATOM    261  CA  ARG   261      21.111  -1.320 -10.797  1.00 25.00           C
ATOM    262  CA  ASN   262      22.219   2.293 -10.354  1.00 25.00           C
ATOM    263  CA  VAL   263      22.655   3.118  -6.672  1.00 25.00           C
ATOM    264  CA  ARG   264      24.109   4.176  -3.296  1.00 25.00           C
ATOM    265  CA  ALA   265      23.409   3.264   0.297  1.00 25.00           C
ATOM    266  CA  VAL   266      26.862   3.170   1.865  1.00 25.00           C
ATOM    267  CA  GLY   267      28.467   2.848   5.305  1.00 25.00           C
ATOM    268  CA  TRP   268      31.758   1.027   4.530  1.00 25.00           C
ATOM    269  CA  THR   269      35.174   1.252   2.959  1.00 25.00           C
ATOM    270  CA  PRO   270      36.858   3.599   0.493  1.00 25.00           C
ATOM    271  CA  LEU   271      35.911   6.743  -1.500  1.00 25.00           C
ATOM    272  CA  HIS   272      39.429   7.441  -2.845  1.00 25.00           C
ATOM    273  CA  THR   273      38.781   5.114  -5.817  1.00 25.00           C
ATOM    274  CA  LEU   274      35.474   6.906  -6.532  1.00 25.00           C
ATOM    275  CA  LEU   275      37.255  10.295  -6.405  1.00 25.00           C
ATOM    276  CA  ARG   276      38.224   9.386  -9.969  1.00 25.00           C
ATOM    277  CA  THR   277      34.926  11.167 -10.752  1.00 25.00           C
ATOM    278  CA  CYS   278      33.224  12.945  -7.851  1.00 25.00           C
ATOM    279  CA  THR   279      30.885  14.300 -10.546  1.00 25.00           C
ATOM    280  CA  ALA   280      27.622  14.836  -8.753  1.00 25.00           C
ATOM    281  CA  VAL   281      25.376  13.661  -5.946  1.00 25.00           C
ATOM    282  CA  VAL   282      24.215  16.941  -4.335  1.00 25.00           C
ATOM    283  CA  HIS   283      23.949  18.821  -1.115  1.00 25.00           C
ATOM    284  CA  HIS   284      24.324  19.684   2.563  1.00 25.00           C
ATOM    285  CA  GLY   285      27.010  19.848   5.235  1.00 25.00           C
ATOM    286  CA  GLY   286      29.037  22.809   6.534  1.00 25.00           C
ATOM    287  CA  GLY   287      30.313  22.895   2.966  1.00 25.00           C
ATOM    288  CA  GLY   288      32.854  20.285   4.149  1.00 25.00           C
ATOM    289  CA  THR   289      31.433  17.740   1.665  1.00 25.00           C
ATOM    290  CA  VAL   290      31.687  20.317  -1.158  1.00 25.00           C
ATOM    291  CA  MET   291      35.321  21.050  -0.194  1.00 25.00           C
ATOM    292  CA  THR   292      36.107  17.301  -0.208  1.00 25.00           C
ATOM    293  CA  ALA   293      34.502  16.953  -3.668  1.00 25.00           C
ATOM    294  CA  ILE   294      36.576  19.904  -4.954  1.00 25.00           C
ATOM    295  CA  ASP   295      39.761  18.311  -3.550  1.00 25.00           C
ATOM    296  CA  ALA   296      38.883  14.994  -5.252  1.00 25.00           C
ATOM    297  CA  GLY   297      36.879  16.433  -8.141  1.00 25.00           C
ATOM    298  CA  ILE   298      34.207  18.689  -9.574  1.00 25.00           C
ATOM    299  CA  PRO   299      31.554  19.518  -7.016  1.00 25.00           C
ATOM    300  CA  GLN   300      29.229  17.598  -4.748  1.00 25.00           C
ATOM    301  CA  LEU   301      27.468  20.920  -4.074  1.00 25.00           C
ATOM    302  CA  LEU   302      26.794  22.966  -0.924  1.00 25.00           C
ATOM    303  CA  ALA   303      25.553  24.575   2.310  1.00 25.00           C
ATOM    304  CA  PRO   304      21.752  25.003   2.242  1.00 25.00           C
ATOM    305  CA  ASP   305      19.467  27.022  -0.053  1.00 25.00           C
ATOM    306  CA  PRO   306      21.328  30.218   0.934  1.00 25.00           C
ATOM    307  CA  ARG   307      24.715  31.985   1.344  1.00 25.00           C
ATOM    308  CA  ASP   308      26.084  29.361   3.743  1.00 25.00           C
ATOM    309  CA  GLN   309      29.470  27.731   4.286  1.00 25.00           C
ATOM    310  CA  PHE   310      30.299  30.551   1.839  1.00 25.00           C
ATOM    311  CA  GLN   311      33.430  29.100   0.178  1.00 25.00           C
ATOM    312  CA  HIS   312      31.259  26.715  -1.888  1.00 25.00           C
ATOM    313  CA  THR   313      29.033  29.639  -2.968  1.00 25.00           C
ATOM    314  CA  ALA   314      32.129  31.651  -3.986  1.00 25.00           C
ATOM    315  CA  ARG   315      33.431  28.673  -6.010  1.00 25.00           C
ATOM    316  CA  GLU   316      30.034  28.340  -7.748  1.00 25.00           C
ATOM    317  CA  ALA   317      30.064  32.078  -8.578  1.00 25.00           C
ATOM    318  CA  VAL   318      33.602  31.757 -10.010  1.00 25.00           C
ATOM    319  CA  SER   319      32.495  28.774 -12.142  1.00 25.00           C
ATOM    320  CA  ARG   320      28.746  28.350 -12.341  1.00 25.00           C
ATOM    321  CA  ARG   321      25.638  27.963 -10.188  1.00 25.00           C
ATOM    322  CA  GLY   322      27.286  24.858  -8.723  1.00 25.00           C
ATOM    323  CA  ILE   323      24.647  24.768  -5.966  1.00 25.00           C
ATOM    324  CA  GLY   324      24.166  21.551  -7.886  1.00 25.00           C
ATOM    325  CA  LEU   325      20.630  20.360  -7.448  1.00 25.00           C
ATOM    326  CA  VAL   326      19.195  23.182  -5.402  1.00 25.00           C
ATOM    327  CA  SER   327      15.649  23.422  -4.112  1.00 25.00           C
ATOM    328  CA  THR   328      13.670  24.407  -7.181  1.00 25.00           C
ATOM    329  CA  SER   329      12.265  21.442  -9.163  1.00 25.00           C
ATOM    330  CA  ASP   330      15.459  19.666 -10.063  1.00 25.00           C
ATOM    331  CA  LYS   331      14.824  19.244 -13.816  1.00 25.00           C
ATOM    332  CA  VAL   332      16.985  22.320 -14.552  1.00 25.00           C
ATOM    333  CA  ASP   333      19.788  20.905 -12.359  1.00 25.00           C
ATOM    334  CA  ALA   334      19.571  17.554 -14.200  1.00 25.00           C
ATOM    335  CA  ASP   335      19.762  19.365 -17.569  1.00 25.00           C
ATOM    336  CA  LEU   336      22.830  21.320 -16.373  1.00 25.00           C
ATOM    337  CA  LEU   337      24.492  18.062 -15.234  1.00 25.00           C
ATOM    338  CA  ARG   338      23.764  16.472 -18.641  1.00 25.00           C
ATOM    339  CA  ARG   339      25.273  19.513 -20.412  1.00 25.00           C
ATOM    340  CA  LEU   340      28.395  19.281 -18.205  1.00 25.00           C
ATOM    341  CA  ILE   341      28.720  15.552 -19.016  1.00 25.00           C
ATOM    342  CA  GLY   342      28.770  15.702 -22.775  1.00 25.00           C
ATOM    343  CA  ASP   343      32.285  14.969 -23.915  1.00 25.00           C
ATOM    344  CA  GLU   344      35.715  16.344 -22.993  1.00 25.00           C
ATOM    345  CA  SER   345      36.182  20.099 -22.399  1.00 25.00           C
ATOM    346  CA  LEU   346      34.851  19.724 -18.827  1.00 25.00           C
ATOM    347  CA  ARG   347      37.266  16.817 -18.206  1.00 25.00           C
ATOM    348  CA  THR   348      40.177  18.919 -19.538  1.00 25.00           C
ATOM    349  CA  ALA   349      39.170  21.813 -17.241  1.00 25.00           C
ATOM    350  CA  ALA   350      39.028  19.424 -14.252  1.00 25.00           C
ATOM    351  CA  ARG   351      42.504  18.077 -15.131  1.00 25.00           C
ATOM    352  CA  GLU   352      43.859  21.652 -15.360  1.00 25.00           C
ATOM    353  CA  VAL   353      42.331  22.475 -11.945  1.00 25.00           C
ATOM    354  CA  ARG   354      43.927  19.332 -10.447  1.00 25.00           C
ATOM    355  CA  GLU   355      47.318  20.318 -11.927  1.00 25.00           C
ATOM    356  CA  GLU   356      46.964  23.836 -10.455  1.00 25.00           C
ATOM    357  CA  MET   357      46.114  22.346  -7.031  1.00 25.00           C
ATOM    358  CA  VAL   358      49.183  20.063  -7.236  1.00 25.00           C
ATOM    359  CA  ALA   359      52.676  20.184  -5.725  1.00 25.00           C
TER
END
