
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  143 (  143),  selected  143 , name T0338TS168_4-D1
# Molecule2: number of CA atoms  143 ( 1129),  selected  143 , name T0338_D1.pdb
# PARAMETERS: T0338TS168_4-D1.T0338_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    40       100 - 139         4.97    21.13
  LONGEST_CONTINUOUS_SEGMENT:    40       101 - 140         4.88    21.29
  LONGEST_CONTINUOUS_SEGMENT:    40       102 - 141         4.96    21.70
  LONGEST_CONTINUOUS_SEGMENT:    40       103 - 142         4.97    22.24
  LONGEST_CONTINUOUS_SEGMENT:    40       104 - 143         4.87    22.58
  LCS_AVERAGE:     24.31

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    27        20 - 46          1.81    20.37
  LONGEST_CONTINUOUS_SEGMENT:    27        21 - 47          1.89    20.49
  LCS_AVERAGE:     11.79

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    24        22 - 45          0.76    20.72
  LONGEST_CONTINUOUS_SEGMENT:    24        23 - 46          0.96    20.86
  LCS_AVERAGE:      9.79

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  143
LCS_GDT     A       1     A       1      3    4   19     0    3    4    4    4    4    8   10   11   12   16   23   27   32   39   44   49   54   59   65 
LCS_GDT     S       2     S       2      3    4   19     3    3    4    4    4    7    9   13   21   28   32   36   38   41   44   49   55   60   65   69 
LCS_GDT     S       3     S       3      3    4   19     3    3    4    5    9   13   16   20   26   33   37   43   45   49   53   57   61   66   67   69 
LCS_GDT     R       4     R       4      3    6   19     3    3    4    6   12   14   18   24   26   33   37   43   45   49   53   58   61   66   67   69 
LCS_GDT     W       5     W       5      4    6   19     4    4    4    8   12   14   19   24   29   33   38   43   45   51   54   58   61   66   67   69 
LCS_GDT     F       6     F       6      4    6   19     4    4    5    8   10   13   16   19   26   27   34   43   45   49   52   58   61   66   67   68 
LCS_GDT     F       7     F       7      4    6   19     4    4    4    6    6    9   12   15   21   26   31   36   42   48   50   53   59   62   64   66 
LCS_GDT     T       8     T       8      4    6   19     4    4    4    4    6    7    9   14   16   18   20   23   24   24   34   36   43   47   54   62 
LCS_GDT     R       9     R       9      5    6   19     5    5    5    6    6    7    9   12   16   18   20   23   31   35   44   52   59   62   64   65 
LCS_GDT     E      10     E      10      5    6   19     5    5    5    6    6    8    9   15   22   26   34   39   42   48   50   53   59   62   64   65 
LCS_GDT     Q      11     Q      11      5    6   19     5    5    5    5    6    8    9   12   22   26   34   39   42   48   50   53   59   62   64   65 
LCS_GDT     L      12     L      12      5    6   19     5    5    5    5    6   19   19   19   22   26   34   39   42   48   50   53   59   62   64   65 
LCS_GDT     E      13     E      13      5    6   19     5    5    5    6    8   19   19   19   22   26   34   36   42   47   50   53   59   62   64   65 
LCS_GDT     N      14     N      14      4    6   19     3    3    4    4    6    7   12   17   18   20   24   31   33   38   41   48   54   57   60   63 
LCS_GDT     T      15     T      15      4    5   34     3    3    4    4    6    7    9   11   15   20   25   28   33   37   44   49   52   55   57   61 
LCS_GDT     P      16     P      16      4    5   34     3    3    4    4    6    7   11   15   18   24   26   29   33   41   45   49   52   55   57   58 
LCS_GDT     S      17     S      17      3    5   34     3    3    3    3    5    6    9   10   10   12   15   16   18   27   29   37   50   52   57   58 
LCS_GDT     R      18     R      18      3    4   34     3    3    3    3    4    5    5    6    7   10   17   28   33   35   43   49   52   55   57   58 
LCS_GDT     R      19     R      19      3    4   34     1    3    3    4    8   16   23   27   28   30   32   35   39   44   48   51   52   55   57   58 
LCS_GDT     C      20     C      20      4   27   34     4    5    5   19   24   25   26   27   28   30   32   35   39   44   48   51   51   53   56   58 
LCS_GDT     G      21     G      21      4   27   34     4    5   12   21   24   25   26   27   29   30   32   35   39   44   48   51   52   55   57   58 
LCS_GDT     V      22     V      22     24   27   34     5   20   22   23   24   25   26   29   31   32   33   36   39   44   48   51   52   55   57   58 
LCS_GDT     E      23     E      23     24   27   34     4   20   23   23   24   25   27   29   31   32   33   36   39   44   48   51   52   55   57   58 
LCS_GDT     A      24     A      24     24   27   34    20   22   23   23   24   25   27   29   31   32   33   36   39   44   48   51   52   55   57   59 
LCS_GDT     D      25     D      25     24   27   34    20   22   23   23   24   25   27   29   31   32   33   36   38   44   48   51   54   55   60   63 
LCS_GDT     K      26     K      26     24   27   34    20   22   23   23   24   25   27   29   31   32   33   36   39   44   48   51   54   56   60   63 
LCS_GDT     E      27     E      27     24   27   34    20   22   23   23   24   25   27   29   31   32   33   36   39   44   48   51   52   55   59   63 
LCS_GDT     L      28     L      28     24   27   34    20   22   23   23   24   25   27   29   31   32   33   36   39   44   48   51   55   58   60   63 
LCS_GDT     S      29     S      29     24   27   34    20   22   23   23   24   25   27   29   31   32   34   39   42   48   50   53   59   62   64   65 
LCS_GDT     C      30     C      30     24   27   34    20   22   23   23   24   25   27   29   31   32   34   36   42   47   50   53   59   62   64   65 
LCS_GDT     R      31     R      31     24   27   34    20   22   23   23   24   25   27   29   31   32   34   39   42   48   50   53   59   62   64   65 
LCS_GDT     Q      32     Q      32     24   27   34    20   22   23   23   24   25   27   29   31   32   36   42   44   48   50   53   59   62   64   66 
LCS_GDT     Q      33     Q      33     24   27   34    20   22   23   23   24   25   27   29   31   32   37   43   45   48   50   53   59   62   65   67 
LCS_GDT     A      34     A      34     24   27   34    20   22   23   23   24   25   27   29   31   33   37   43   45   48   50   53   59   66   67   68 
LCS_GDT     A      35     A      35     24   27   34    20   22   23   23   24   25   27   29   31   33   37   43   45   46   52   58   61   66   67   69 
LCS_GDT     N      36     N      36     24   27   34    20   22   23   23   24   25   27   29   31   33   38   43   45   51   54   58   61   66   67   69 
LCS_GDT     L      37     L      37     24   27   34    20   22   23   23   24   25   27   29   31   32   38   42   46   51   54   58   61   66   67   69 
LCS_GDT     I      38     I      38     24   27   34    20   22   23   23   24   25   27   29   31   36   40   42   46   51   54   58   61   66   67   69 
LCS_GDT     Q      39     Q      39     24   27   34    20   22   23   23   24   25   27   29   31   33   37   42   46   51   54   58   61   66   67   69 
LCS_GDT     E      40     E      40     24   27   34    20   22   23   23   24   25   27   30   34   36   40   42   46   51   54   57   61   62   67   69 
LCS_GDT     M      41     M      41     24   27   34    19   22   23   23   24   25   27   30   34   36   38   41   45   49   52   55   59   61   64   69 
LCS_GDT     G      42     G      42     24   27   34    20   22   23   23   24   25   27   29   31   32   36   39   45   48   50   54   58   59   62   65 
LCS_GDT     Q      43     Q      43     24   27   34    20   22   23   23   24   25   27   29   31   33   36   39   44   48   49   52   57   59   61   64 
LCS_GDT     R      44     R      44     24   27   34    20   22   23   23   24   25   27   29   31   33   36   39   43   46   49   51   54   57   59   63 
LCS_GDT     L      45     L      45     24   27   34     3   22   23   23   24   25   27   29   31   32   33   36   39   44   48   51   53   55   58   60 
LCS_GDT     N      46     N      46     24   27   34     3    3    4   19   23   25   26   29   31   32   33   36   39   44   48   51   52   55   57   60 
LCS_GDT     V      47     V      47      4   27   34     3    3    5    7    9    9   12   20   28   30   32   36   39   44   48   51   52   55   57   60 
LCS_GDT     S      48     S      48      4   18   34     3    3    4    7    9    9   14   22   23   27   32   36   39   44   48   51   52   55   57   60 
LCS_GDT     Q      49     Q      49     17   18   34    16   17   17   17   17   19   19   22   23   28   32   36   37   40   40   45   49   55   57   60 
LCS_GDT     L      50     L      50     17   18   34    16   17   17   17   17   19   19   19   21   28   32   36   39   44   48   51   52   55   57   58 
LCS_GDT     T      51     T      51     17   18   34    16   17   17   17   17   19   19   22   23   28   32   36   37   42   48   51   52   55   57   60 
LCS_GDT     I      52     I      52     17   18   34    16   17   17   17   17   19   20   27   28   29   32   36   38   43   45   51   53   55   58   61 
LCS_GDT     N      53     N      53     17   18   32    16   17   17   17   17   19   19   19   21   28   32   36   38   42   48   51   53   55   59   61 
LCS_GDT     T      54     T      54     17   18   32    16   17   17   17   17   19   19   19   21   28   32   36   39   44   48   51   53   55   59   61 
LCS_GDT     A      55     A      55     17   18   32    16   17   17   17   17   19   19   22   27   33   36   39   43   46   49   51   54   57   62   64 
LCS_GDT     I      56     I      56     17   18   32    16   17   17   17   17   19   19   21   28   31   37   40   45   48   50   54   59   61   64   69 
LCS_GDT     V      57     V      57     17   18   32    16   17   17   17   17   19   19   19   21   28   32   36   39   44   48   51   54   58   64   69 
LCS_GDT     Y      58     Y      58     17   18   32    16   17   17   17   17   19   19   20   27   33   37   40   45   51   54   58   61   66   67   69 
LCS_GDT     M      59     M      59     17   18   32    16   17   17   17   17   19   20   25   31   36   40   42   46   51   54   58   61   66   67   69 
LCS_GDT     H      60     H      60     17   18   32    16   17   17   17   17   19   19   20   25   28   38   43   45   49   54   58   61   66   67   69 
LCS_GDT     R      61     R      61     17   18   32    16   17   17   17   17   19   19   19   21   28   32   43   45   48   52   58   61   66   67   69 
LCS_GDT     F      62     F      62     17   18   32    16   17   17   17   17   19   19   20   26   33   38   43   45   49   52   58   61   66   67   69 
LCS_GDT     Y      63     Y      63     17   18   32    16   17   17   17   17   19   19   19   24   33   37   43   45   48   50   53   59   66   67   68 
LCS_GDT     M      64     M      64     17   18   32    16   17   17   17   17   19   19   19   21   28   34   39   42   48   50   53   59   62   64   65 
LCS_GDT     H      65     H      65     17   18   32     4   17   17   17   17   19   19   19   21   28   32   36   37   44   48   51   59   62   64   65 
LCS_GDT     H      66     H      66      4   18   32     3    4    5    5    7   10   15   18   21   28   32   36   37   44   48   51   51   53   56   61 
LCS_GDT     S      67     S      67      4    6   32     2    4    5    6    8   10   14   16   21   28   32   36   37   41   47   49   51   53   55   61 
LCS_GDT     F      68     F      68      4    6   32     3    4    5    6   13   25   27   29   31   32   33   36   38   39   41   44   47   52   56   61 
LCS_GDT     T      69     T      69      4    6   32     3    3    5    6    8   10   14   16   21   28   32   36   38   39   40   42   45   48   52   56 
LCS_GDT     K      70     K      70      4    5   37     3    3    5    7    9   10   14   16   21   27   32   36   37   38   40   41   42   46   52   57 
LCS_GDT     F      71     F      71      4    5   37     0    4    5    7    9   10   14   16   20   28   32   36   37   38   40   45   50   54   56   61 
LCS_GDT     N      72     N      72      3   18   37     3    4    4    7   10   15   16   17   22   28   32   36   42   47   50   53   59   62   64   65 
LCS_GDT     K      73     K      73     17   18   37    11   15   16   16   16   17   17   18   23   28   31   34   37   38   50   53   59   62   64   65 
LCS_GDT     N      74     N      74     17   18   37    12   15   16   16   16   17   17   18   23   28   32   43   45   48   50   53   59   66   67   69 
LCS_GDT     I      75     I      75     17   18   37    12   15   16   16   16   17   17   20   25   33   38   43   45   49   54   58   61   66   67   69 
LCS_GDT     I      76     I      76     17   18   37    12   15   16   16   16   17   17   18   23   28   37   43   45   48   50   53   59   66   67   69 
LCS_GDT     S      77     S      77     17   18   37    12   15   16   16   16   17   17   18   23   32   37   43   45   48   50   58   61   66   67   69 
LCS_GDT     S      78     S      78     17   18   37    12   15   16   16   16   17   17   24   30   36   40   43   46   51   54   58   61   66   67   69 
LCS_GDT     T      79     T      79     17   18   37    12   15   16   16   16   25   27   29   31   34   40   43   46   51   54   58   61   66   67   69 
LCS_GDT     A      80     A      80     17   18   37    12   15   16   16   16   17   17   20   29   33   38   43   45   49   54   58   61   66   67   69 
LCS_GDT     L      81     L      81     17   18   37    12   15   16   16   16   17   17   24   28   33   38   43   46   51   54   58   61   66   67   69 
LCS_GDT     F      82     F      82     17   18   37    12   15   16   16   16   23   27   30   34   36   40   43   46   51   54   58   61   66   67   69 
LCS_GDT     L      83     L      83     17   18   37    12   15   16   16   16   20   27   30   34   36   40   43   46   51   54   58   61   66   67   69 
LCS_GDT     A      84     A      84     17   18   37    12   15   16   16   16   17   17   24   30   36   40   43   46   51   54   58   61   66   67   69 
LCS_GDT     A      85     A      85     17   18   37    10   15   16   16   16   17   17   19   23   31   36   43   46   51   54   58   61   66   67   69 
LCS_GDT     K      86     K      86     17   18   37     8   15   16   16   16   17   20   28   32   36   37   41   46   51   54   58   61   66   67   69 
LCS_GDT     V      87     V      87     17   18   37    12   15   16   16   16   23   27   30   34   36   40   43   46   51   54   58   61   66   67   69 
LCS_GDT     E      88     E      88     17   18   37     6   13   16   16   16   17   17   19   24   33   37   43   45   51   54   58   61   66   67   69 
LCS_GDT     E      89     E      89     17   18   37     3    3    4    7   16   21   21   23   24   33   37   43   45   51   54   57   60   66   67   69 
LCS_GDT     Q      90     Q      90      4   18   37     3    3    4    6   10   14   16   18   23   28   31   39   41   44   49   52   56   60   65   69 
LCS_GDT     A      91     A      91      4    6   37     3    3    4    4    5   11   16   18   20   28   31   34   34   35   36   43   47   50   54   62 
LCS_GDT     R      92     R      92      4    6   37     0    3    4    5    5    6    8   10   16   19   21   25   30   33   36   36   37   41   43   51 
LCS_GDT     K      93     K      93     12   13   37     0    3    3   12   13   14   16   18   23   28   31   34   34   35   36   36   38   38   45   51 
LCS_GDT     L      94     L      94     12   13   37    11   11   11   12   13   14   16   18   23   28   31   34   34   35   36   36   38   39   45   53 
LCS_GDT     E      95     E      95     12   13   37    11   11   11   12   13   14   16   18   22   25   29   33   34   35   36   41   45   48   48   51 
LCS_GDT     H      96     H      96     12   13   37    11   11   11   12   13   14   16   18   23   28   31   34   34   35   36   36   43   48   51   55 
LCS_GDT     V      97     V      97     12   13   37    11   11   11   12   13   14   16   19   23   28   31   34   39   43   45   51   56   58   62   65 
LCS_GDT     I      98     I      98     12   13   37    11   11   11   12   18   24   26   28   31   32   33   36   38   39   41   44   45   50   52   56 
LCS_GDT     K      99     K      99     12   13   37    11   11   11   12   13   14   16   18   23   28   31   36   38   39   40   42   45   48   49   53 
LCS_GDT     V     100     V     100     12   13   40    11   11   11   12   13   14   16   18   23   28   31   34   39   42   45   47   50   57   61   63 
LCS_GDT     A     101     A     101     12   13   40    11   11   11   12   13   16   23   28   30   32   34   39   41   44   49   53   56   60   63   66 
LCS_GDT     H     102     H     102     12   13   40    11   11   11   12   13   14   16   18   23   28   31   34   34   35   40   45   48   52   56   63 
LCS_GDT     A     103     A     103     12   13   40    11   11   11   12   13   14   16   18   23   28   31   34   34   35   36   42   47   50   56   61 
LCS_GDT     C     104     C     104     12   13   40    11   11   11   12   13   14   16   18   20   31   34   40   42   44   48   53   56   58   62   66 
LCS_GDT     L     105     L     105      3   13   40     0    3    4    7   13   14   22   30   34   36   40   42   46   51   54   58   61   66   67   69 
LCS_GDT     H     106     H     106      0    4   40     0    0    4    6   11   20   27   30   34   36   40   42   46   51   54   58   61   66   67   69 
LCS_GDT     P     107     P     107      0    5   40     0    2    4    6    9   18   27   30   34   36   40   42   46   51   54   57   61   66   67   69 
LCS_GDT     L     108     L     108      3    6   40     3    3    4    6    9   13   27   30   34   36   40   42   46   51   54   58   61   66   67   69 
LCS_GDT     E     109     E     109      5    6   40     3    4    5    8   12   15   23   30   34   36   40   42   46   51   54   58   61   66   67   69 
LCS_GDT     P     110     P     110      5    6   40     3    4    5    8   14   19   27   30   34   36   40   42   46   51   54   58   61   66   67   69 
LCS_GDT     L     111     L     111      5    6   40     3    4    5    5    7   10   12   20   29   31   38   42   46   51   54   58   61   66   67   69 
LCS_GDT     L     112     L     112      5    6   40     3    4    5    8   12   13   16   24   30   36   40   42   46   51   54   58   61   66   67   69 
LCS_GDT     D     113     D     113      5    6   40     4    4    5    8   13   15   26   30   34   36   40   43   46   51   54   58   61   66   67   69 
LCS_GDT     T     114     T     114      4    5   40     4    5    5    7   12   13   16   21   23   27   34   39   43   49   54   58   61   66   67   68 
LCS_GDT     K     115     K     115      4   24   40     4    4    4    6    9   18   24   27   28   30   32   38   43   49   50   54   58   59   62   68 
LCS_GDT     C     116     C     116     22   24   40    12   20   22   22   22   23   25   29   34   36   40   41   46   51   54   58   61   66   67   69 
LCS_GDT     D     117     D     117     22   24   40    14   20   22   22   22   23   25   30   34   36   40   43   46   51   54   58   61   66   67   69 
LCS_GDT     A     118     A     118     22   24   40    14   20   22   22   22   23   25   28   34   36   40   43   46   51   54   58   61   66   67   69 
LCS_GDT     Y     119     Y     119     22   24   40    14   20   22   22   22   23   27   30   34   36   40   43   46   51   54   58   61   66   67   69 
LCS_GDT     L     120     L     120     22   24   40    14   20   22   22   22   23   27   30   34   36   40   43   46   51   54   58   61   66   67   69 
LCS_GDT     Q     121     Q     121     22   24   40    14   20   22   22   22   23   27   30   34   36   40   43   46   51   54   58   61   66   67   69 
LCS_GDT     Q     122     Q     122     22   24   40    14   20   22   22   22   23   27   30   34   36   40   43   46   51   54   58   61   66   67   69 
LCS_GDT     T     123     T     123     22   24   40    14   20   22   22   22   23   27   30   34   36   40   43   46   51   54   58   61   66   67   69 
LCS_GDT     R     124     R     124     22   24   40    14   20   22   22   22   23   27   30   34   36   40   43   46   51   54   58   61   66   67   69 
LCS_GDT     E     125     E     125     22   24   40    14   20   22   22   22   23   27   30   34   36   40   43   46   51   54   58   61   66   67   69 
LCS_GDT     L     126     L     126     22   24   40    14   20   22   22   24   25   27   30   34   36   40   43   46   51   54   58   61   66   67   69 
LCS_GDT     V     127     V     127     22   24   40    14   20   22   22   22   24   27   30   34   36   40   43   46   51   54   58   61   66   67   69 
LCS_GDT     I     128     I     128     22   24   40    14   20   22   22   24   25   27   30   34   36   40   43   46   51   54   58   61   66   67   69 
LCS_GDT     L     129     L     129     22   24   40    14   20   22   22   22   23   27   30   34   36   40   43   46   51   54   58   61   66   67   69 
LCS_GDT     E     130     E     130     22   24   40    14   20   22   22   22   23   27   30   34   36   40   43   46   51   54   58   61   66   67   69 
LCS_GDT     T     131     T     131     22   24   40    11   20   22   22   22   23   27   30   34   36   40   42   46   51   54   58   61   66   67   69 
LCS_GDT     I     132     I     132     22   24   40    14   20   22   22   22   23   27   30   34   36   40   42   46   51   54   58   61   66   67   69 
LCS_GDT     M     133     M     133     22   24   40    11   20   22   22   22   23   27   30   34   36   40   42   46   51   54   58   61   66   67   69 
LCS_GDT     L     134     L     134     22   24   40    11   20   22   22   22   23   27   30   34   36   40   42   46   51   54   58   61   66   67   69 
LCS_GDT     Q     135     Q     135     22   24   40    11   20   22   22   22   23   27   30   34   36   40   42   46   51   54   58   61   66   67   69 
LCS_GDT     T     136     T     136     22   24   40    11   20   22   22   22   23   27   30   34   36   40   42   46   51   54   58   61   66   67   69 
LCS_GDT     L     137     L     137     22   24   40    11   16   22   22   22   22   24   30   33   36   40   41   45   49   54   57   61   66   67   68 
LCS_GDT     G     138     G     138      5   24   40     3    4    7   16   20   23   27   30   34   36   40   42   46   51   54   58   61   66   67   69 
LCS_GDT     F     139     F     139      5    7   40     4    4    6    8   11   17   24   27   32   35   37   43   46   51   54   58   61   66   67   69 
LCS_GDT     E     140     E     140      5    7   40     4    4    6    8   11   17   24   27   29   33   36   39   45   49   52   56   60   61   65   69 
LCS_GDT     I     141     I     141      5    7   40     4    4    6    8   10   16   24   27   28   33   36   39   43   46   48   51   56   60   64   69 
LCS_GDT     T     142     T     142      5    7   40     4    4    5    8    9   11   18   22   28   29   32   35   39   44   48   51   53   56   60   62 
LCS_GDT     I     143     I     143      3    7   40     0    3    4    6    7    9   12   16   20   24   30   35   39   44   48   51   53   55   60   62 
LCS_AVERAGE  LCS_A:  15.30  (   9.79   11.79   24.31 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     20     22     23     23     24     25     27     30     34     36     40     43     46     51     54     58     61     66     67     69 
GDT PERCENT_CA  13.99  15.38  16.08  16.08  16.78  17.48  18.88  20.98  23.78  25.17  27.97  30.07  32.17  35.66  37.76  40.56  42.66  46.15  46.85  48.25
GDT RMS_LOCAL    0.25   0.38   0.55   0.55   0.76   0.97   1.39   2.68   2.89   3.07   3.52   4.37   4.11   4.63   4.82   5.16   6.68   5.74   6.97   6.29
GDT RMS_ALL_CA  20.73  20.76  20.86  20.86  20.72  21.16  21.33  20.21  20.26  20.42  19.45  17.03  19.19  18.80  18.66  17.94  17.99  17.74  17.74  18.51

#      Molecule1      Molecule2       DISTANCE
LGA    A       1      A       1         16.408
LGA    S       2      S       2         15.959
LGA    S       3      S       3         14.883
LGA    R       4      R       4         13.913
LGA    W       5      W       5         10.946
LGA    F       6      F       6         14.577
LGA    F       7      F       7         19.669
LGA    T       8      T       8         26.331
LGA    R       9      R       9         28.761
LGA    E      10      E      10         32.799
LGA    Q      11      Q      11         31.934
LGA    L      12      L      12         30.798
LGA    E      13      E      13         35.923
LGA    N      14      N      14         39.380
LGA    T      15      T      15         36.682
LGA    P      16      P      16         39.936
LGA    S      17      S      17         42.241
LGA    R      18      R      18         45.454
LGA    R      19      R      19         48.285
LGA    C      20      C      20         48.429
LGA    G      21      G      21         51.492
LGA    V      22      V      22         45.862
LGA    E      23      E      23         48.318
LGA    A      24      A      24         46.537
LGA    D      25      D      25         44.932
LGA    K      26      K      26         41.114
LGA    E      27      E      27         37.023
LGA    L      28      L      28         35.996
LGA    S      29      S      29         33.368
LGA    C      30      C      30         28.965
LGA    R      31      R      31         26.153
LGA    Q      32      Q      32         25.220
LGA    Q      33      Q      33         21.708
LGA    A      34      A      34         17.155
LGA    A      35      A      35         16.427
LGA    N      36      N      36         13.994
LGA    L      37      L      37          9.906
LGA    I      38      I      38          7.003
LGA    Q      39      Q      39          8.096
LGA    E      40      E      40          2.903
LGA    M      41      M      41          3.501
LGA    G      42      G      42          8.277
LGA    Q      43      Q      43          8.797
LGA    R      44      R      44         10.841
LGA    L      45      L      45         15.113
LGA    N      46      N      46         20.148
LGA    V      47      V      47         22.250
LGA    S      48      S      48         24.613
LGA    Q      49      Q      49         24.705
LGA    L      50      L      50         25.125
LGA    T      51      T      51         21.767
LGA    I      52      I      52         16.773
LGA    N      53      N      53         16.160
LGA    T      54      T      54         15.431
LGA    A      55      A      55         10.540
LGA    I      56      I      56          7.828
LGA    V      57      V      57         11.188
LGA    Y      58      Y      58          7.173
LGA    M      59      M      59          6.501
LGA    H      60      H      60         11.385
LGA    R      61      R      61         12.800
LGA    F      62      F      62         11.678
LGA    Y      63      Y      63         16.873
LGA    M      64      M      64         20.900
LGA    H      65      H      65         20.671
LGA    H      66      H      66         23.427
LGA    S      67      S      67         27.167
LGA    F      68      F      68         27.169
LGA    T      69      T      69         32.570
LGA    K      70      K      70         30.626
LGA    F      71      F      71         25.158
LGA    N      72      N      72         21.923
LGA    K      73      K      73         18.870
LGA    N      74      N      74         13.540
LGA    I      75      I      75          9.548
LGA    I      76      I      76         13.396
LGA    S      77      S      77         12.659
LGA    S      78      S      78          6.116
LGA    T      79      T      79          6.256
LGA    A      80      A      80          9.317
LGA    L      81      L      81          7.715
LGA    F      82      F      82          2.140
LGA    L      83      L      83          2.962
LGA    A      84      A      84          6.327
LGA    A      85      A      85          7.852
LGA    K      86      K      86          5.770
LGA    V      87      V      87          2.311
LGA    E      88      E      88          9.379
LGA    E      89      E      89         10.338
LGA    Q      90      Q      90         12.534
LGA    A      91      A      91         15.824
LGA    R      92      R      92         18.275
LGA    K      93      K      93         18.024
LGA    L      94      L      94         15.535
LGA    E      95      E      95         19.279
LGA    H      96      H      96         16.003
LGA    V      97      V      97         10.383
LGA    I      98      I      98         13.659
LGA    K      99      K      99         15.793
LGA    V     100      V     100         11.398
LGA    A     101      A     101          7.771
LGA    H     102      H     102         12.040
LGA    A     103      A     103         12.945
LGA    C     104      C     104          7.980
LGA    L     105      L     105          4.363
LGA    H     106      H     106          3.303
LGA    P     107      P     107          3.486
LGA    L     108      L     108          3.586
LGA    E     109      E     109          4.353
LGA    P     110      P     110          3.581
LGA    L     111      L     111          7.216
LGA    L     112      L     112          6.118
LGA    D     113      D     113          3.921
LGA    T     114      T     114          6.929
LGA    K     115      K     115          7.061
LGA    C     116      C     116          4.409
LGA    D     117      D     117          3.975
LGA    A     118      A     118          4.498
LGA    Y     119      Y     119          3.599
LGA    L     120      L     120          2.371
LGA    Q     121      Q     121          3.107
LGA    Q     122      Q     122          3.085
LGA    T     123      T     123          1.884
LGA    R     124      R     124          1.902
LGA    E     125      E     125          2.552
LGA    L     126      L     126          1.835
LGA    V     127      V     127          1.008
LGA    I     128      I     128          1.771
LGA    L     129      L     129          1.571
LGA    E     130      E     130          1.375
LGA    T     131      T     131          1.466
LGA    I     132      I     132          0.738
LGA    M     133      M     133          2.302
LGA    L     134      L     134          3.405
LGA    Q     135      Q     135          2.827
LGA    T     136      T     136          2.547
LGA    L     137      L     137          4.985
LGA    G     138      G     138          2.166
LGA    F     139      F     139          6.791
LGA    E     140      E     140          9.127
LGA    I     141      I     141         11.427
LGA    T     142      T     142         15.997
LGA    I     143      I     143         15.793

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  143  143    4.0     30    2.68    23.252    19.896     1.080

LGA_LOCAL      RMSD =  2.679  Number of atoms =   30  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 20.196  Number of atoms =  143 
Std_ALL_ATOMS  RMSD = 14.892  (standard rmsd on all 143 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.122558 * X  +   0.642917 * Y  +   0.756067 * Z  + -11.280886
  Y_new =   0.989356 * X  +   0.139358 * Y  +   0.041871 * Z  +  32.653984
  Z_new =  -0.078444 * X  +   0.753152 * Y  +  -0.653153 * Z  +  51.137249 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.285207   -0.856386  [ DEG:   130.9327    -49.0673 ]
  Theta =   0.078525    3.063067  [ DEG:     4.4992    175.5008 ]
  Phi   =   1.694045   -1.447548  [ DEG:    97.0616    -82.9384 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0338TS168_4-D1                               
REMARK     2: T0338_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0338TS168_4-D1.T0338_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  143  143   4.0   30   2.68  19.896    14.89
REMARK  ---------------------------------------------------------- 
MOLECULE T0338TS168_4-D1
PFRMAT TS
TARGET T0338
MODEL 4
PARENT N/A
ATOM      1  CA  ALA     1     -18.267  10.927  68.034  1.00 25.00           C
ATOM      2  CA  SER     2     -20.631  12.575  65.528  1.00 25.00           C
ATOM      3  CA  SER     3     -24.187  13.232  64.216  1.00 25.00           C
ATOM      4  CA  ARG     4     -24.139  14.797  60.750  1.00 25.00           C
ATOM      5  CA  TRP     5     -24.131  18.459  59.717  1.00 25.00           C
ATOM      6  CA  PHE     6     -26.872  20.789  58.667  1.00 25.00           C
ATOM      7  CA  PHE     7     -26.006  24.135  60.211  1.00 25.00           C
ATOM      8  CA  THR     8     -26.876  27.588  61.624  1.00 25.00           C
ATOM      9  CA  ARG     9     -28.274  27.100  65.147  1.00 25.00           C
ATOM     10  CA  GLU    10     -29.502  25.884  68.565  1.00 25.00           C
ATOM     11  CA  GLN    11     -27.665  28.773  70.281  1.00 25.00           C
ATOM     12  CA  LEU    12     -29.251  31.263  67.841  1.00 25.00           C
ATOM     13  CA  GLU    13     -32.713  29.786  68.546  1.00 25.00           C
ATOM     14  CA  ASN    14     -35.873  27.569  68.464  1.00 25.00           C
ATOM     15  CA  THR    15     -36.431  28.921  64.943  1.00 25.00           C
ATOM     16  CA  PRO    16     -39.638  26.877  65.085  1.00 25.00           C
ATOM     17  CA  SER    17     -42.622  25.260  63.414  1.00 25.00           C
ATOM     18  CA  ARG    18     -43.691  27.369  60.415  1.00 25.00           C
ATOM     19  CA  ARG    19     -44.115  30.501  58.323  1.00 25.00           C
ATOM     20  CA  CYS    20     -43.879  33.198  55.627  1.00 25.00           C
ATOM     21  CA  GLY    21     -43.898  36.885  56.738  1.00 25.00           C
ATOM     22  CA  VAL    22     -40.383  38.175  55.893  1.00 25.00           C
ATOM     23  CA  GLU    23     -39.758  41.444  54.031  1.00 25.00           C
ATOM     24  CA  ALA    24     -38.324  44.015  56.501  1.00 25.00           C
ATOM     25  CA  ASP    25     -38.253  43.632  60.311  1.00 25.00           C
ATOM     26  CA  LYS    26     -37.412  39.914  59.944  1.00 25.00           C
ATOM     27  CA  GLU    27     -34.586  40.768  57.506  1.00 25.00           C
ATOM     28  CA  LEU    28     -33.218  43.368  59.963  1.00 25.00           C
ATOM     29  CA  SER    29     -33.330  40.790  62.792  1.00 25.00           C
ATOM     30  CA  CYS    30     -31.468  38.264  60.596  1.00 25.00           C
ATOM     31  CA  ARG    31     -28.813  40.898  59.773  1.00 25.00           C
ATOM     32  CA  GLN    32     -28.407  41.688  63.498  1.00 25.00           C
ATOM     33  CA  GLN    33     -28.013  37.958  64.271  1.00 25.00           C
ATOM     34  CA  ALA    34     -25.366  37.642  61.522  1.00 25.00           C
ATOM     35  CA  ALA    35     -23.489  40.661  62.948  1.00 25.00           C
ATOM     36  CA  ASN    36     -23.598  39.107  66.446  1.00 25.00           C
ATOM     37  CA  LEU    37     -22.246  35.807  65.049  1.00 25.00           C
ATOM     38  CA  ILE    38     -19.418  37.686  63.280  1.00 25.00           C
ATOM     39  CA  GLN    39     -18.561  39.513  66.535  1.00 25.00           C
ATOM     40  CA  GLU    40     -18.498  36.179  68.418  1.00 25.00           C
ATOM     41  CA  MET    41     -16.186  34.689  65.752  1.00 25.00           C
ATOM     42  CA  GLY    42     -13.863  37.719  66.039  1.00 25.00           C
ATOM     43  CA  GLN    43     -13.791  37.335  69.848  1.00 25.00           C
ATOM     44  CA  ARG    44     -12.950  33.617  69.483  1.00 25.00           C
ATOM     45  CA  LEU    45      -9.730  34.532  67.674  1.00 25.00           C
ATOM     46  CA  ASN    46      -7.231  33.538  70.374  1.00 25.00           C
ATOM     47  CA  VAL    47      -4.783  33.513  67.500  1.00 25.00           C
ATOM     48  CA  SER    48      -3.468  30.013  67.072  1.00 25.00           C
ATOM     49  CA  GLN    49      -0.940  28.521  64.673  1.00 25.00           C
ATOM     50  CA  LEU    50      -1.994  30.113  61.354  1.00 25.00           C
ATOM     51  CA  THR    51      -3.664  26.837  60.284  1.00 25.00           C
ATOM     52  CA  ILE    52      -5.523  26.664  63.627  1.00 25.00           C
ATOM     53  CA  ASN    53      -6.700  30.282  63.188  1.00 25.00           C
ATOM     54  CA  THR    54      -7.924  29.480  59.650  1.00 25.00           C
ATOM     55  CA  ALA    55      -9.814  26.422  60.970  1.00 25.00           C
ATOM     56  CA  ILE    56     -11.426  28.567  63.703  1.00 25.00           C
ATOM     57  CA  VAL    57     -12.468  31.162  61.085  1.00 25.00           C
ATOM     58  CA  TYR    58     -13.987  28.397  58.914  1.00 25.00           C
ATOM     59  CA  MET    59     -15.910  27.044  61.938  1.00 25.00           C
ATOM     60  CA  HIS    60     -17.215  30.561  62.711  1.00 25.00           C
ATOM     61  CA  ARG    61     -18.332  30.973  59.071  1.00 25.00           C
ATOM     62  CA  PHE    62     -20.131  27.596  59.214  1.00 25.00           C
ATOM     63  CA  TYR    63     -21.881  28.638  62.456  1.00 25.00           C
ATOM     64  CA  MET    64     -22.967  31.935  60.840  1.00 25.00           C
ATOM     65  CA  HIS    65     -24.332  30.030  57.811  1.00 25.00           C
ATOM     66  CA  HIS    66     -26.284  33.042  56.658  1.00 25.00           C
ATOM     67  CA  SER    67     -27.324  36.332  54.962  1.00 25.00           C
ATOM     68  CA  PHE    68     -26.890  39.681  53.137  1.00 25.00           C
ATOM     69  CA  THR    69     -28.524  43.012  52.301  1.00 25.00           C
ATOM     70  CA  LYS    70     -26.665  45.526  54.517  1.00 25.00           C
ATOM     71  CA  PHE    71     -23.627  45.618  56.816  1.00 25.00           C
ATOM     72  CA  ASN    72     -20.605  46.358  58.955  1.00 25.00           C
ATOM     73  CA  LYS    73     -16.865  46.347  59.883  1.00 25.00           C
ATOM     74  CA  ASN    74     -15.241  45.566  56.504  1.00 25.00           C
ATOM     75  CA  ILE    75     -14.322  42.056  57.728  1.00 25.00           C
ATOM     76  CA  ILE    76     -17.921  41.501  58.914  1.00 25.00           C
ATOM     77  CA  SER    77     -19.247  42.649  55.509  1.00 25.00           C
ATOM     78  CA  SER    78     -16.844  40.250  53.738  1.00 25.00           C
ATOM     79  CA  THR    79     -18.011  37.380  55.990  1.00 25.00           C
ATOM     80  CA  ALA    80     -21.664  38.221  55.212  1.00 25.00           C
ATOM     81  CA  LEU    81     -20.886  38.244  51.462  1.00 25.00           C
ATOM     82  CA  PHE    82     -19.158  34.841  51.775  1.00 25.00           C
ATOM     83  CA  LEU    83     -22.193  33.445  53.647  1.00 25.00           C
ATOM     84  CA  ALA    84     -24.523  34.778  50.916  1.00 25.00           C
ATOM     85  CA  ALA    85     -22.335  33.156  48.224  1.00 25.00           C
ATOM     86  CA  LYS    86     -22.421  29.831  50.122  1.00 25.00           C
ATOM     87  CA  VAL    87     -26.236  30.053  50.387  1.00 25.00           C
ATOM     88  CA  GLU    88     -26.481  30.746  46.628  1.00 25.00           C
ATOM     89  CA  GLU    89     -29.073  28.496  45.004  1.00 25.00           C
ATOM     90  CA  GLN    90     -28.359  26.022  47.809  1.00 25.00           C
ATOM     91  CA  ALA    91     -27.208  22.602  46.456  1.00 25.00           C
ATOM     92  CA  ARG    92     -27.388  21.649  50.142  1.00 25.00           C
ATOM     93  CA  LYS    93     -24.360  23.825  50.796  1.00 25.00           C
ATOM     94  CA  LEU    94     -21.767  25.648  52.874  1.00 25.00           C
ATOM     95  CA  GLU    95     -18.222  25.174  51.503  1.00 25.00           C
ATOM     96  CA  HIS    96     -18.240  28.758  50.151  1.00 25.00           C
ATOM     97  CA  VAL    97     -19.405  30.064  53.558  1.00 25.00           C
ATOM     98  CA  ILE    98     -16.610  28.102  55.293  1.00 25.00           C
ATOM     99  CA  LYS    99     -14.042  29.555  52.850  1.00 25.00           C
ATOM    100  CA  VAL   100     -15.356  33.087  53.531  1.00 25.00           C
ATOM    101  CA  ALA   101     -15.094  32.485  57.304  1.00 25.00           C
ATOM    102  CA  HIS   102     -11.498  31.238  56.880  1.00 25.00           C
ATOM    103  CA  ALA   103     -10.636  34.350  54.820  1.00 25.00           C
ATOM    104  CA  CYS   104     -12.158  36.592  57.525  1.00 25.00           C
ATOM    105  CA  LEU   105     -10.699  39.406  59.605  1.00 25.00           C
ATOM    106  CA  HIS   106      -9.469  42.722  60.946  1.00 25.00           C
ATOM    107  CA  PRO   107      -8.283  45.801  62.858  1.00 25.00           C
ATOM    108  CA  LEU   108      -6.938  49.271  63.493  1.00 25.00           C
ATOM    109  CA  GLU   109      -5.885  52.896  62.719  1.00 25.00           C
ATOM    110  CA  PRO   110      -6.350  53.627  59.030  1.00 25.00           C
ATOM    111  CA  LEU   111      -7.807  55.820  56.232  1.00 25.00           C
ATOM    112  CA  LEU   112     -11.290  55.582  54.656  1.00 25.00           C
ATOM    113  CA  ASP   113      -9.721  54.813  51.248  1.00 25.00           C
ATOM    114  CA  THR   114      -7.548  52.088  52.835  1.00 25.00           C
ATOM    115  CA  LYS   115     -10.636  50.572  54.521  1.00 25.00           C
ATOM    116  CA  CYS   116     -12.502  50.592  51.176  1.00 25.00           C
ATOM    117  CA  ASP   117      -9.530  48.870  49.480  1.00 25.00           C
ATOM    118  CA  ALA   118      -9.461  46.217  52.242  1.00 25.00           C
ATOM    119  CA  TYR   119     -13.221  45.631  51.806  1.00 25.00           C
ATOM    120  CA  LEU   120     -12.749  45.256  48.024  1.00 25.00           C
ATOM    121  CA  GLN   121      -9.918  42.742  48.601  1.00 25.00           C
ATOM    122  CA  GLN   122     -12.138  40.758  51.011  1.00 25.00           C
ATOM    123  CA  THR   123     -14.962  40.731  48.424  1.00 25.00           C
ATOM    124  CA  ARG   124     -12.527  39.493  45.741  1.00 25.00           C
ATOM    125  CA  GLU   125     -11.312  36.720  48.087  1.00 25.00           C
ATOM    126  CA  LEU   126     -14.935  35.690  48.783  1.00 25.00           C
ATOM    127  CA  VAL   127     -15.655  35.590  45.023  1.00 25.00           C
ATOM    128  CA  ILE   128     -12.548  33.424  44.461  1.00 25.00           C
ATOM    129  CA  LEU   129     -13.671  31.046  47.244  1.00 25.00           C
ATOM    130  CA  GLU   130     -17.153  30.807  45.668  1.00 25.00           C
ATOM    131  CA  THR   131     -15.585  30.037  42.260  1.00 25.00           C
ATOM    132  CA  ILE   132     -13.413  27.312  43.847  1.00 25.00           C
ATOM    133  CA  MET   133     -16.500  25.797  45.532  1.00 25.00           C
ATOM    134  CA  LEU   134     -18.365  25.818  42.187  1.00 25.00           C
ATOM    135  CA  GLN   135     -15.395  24.095  40.492  1.00 25.00           C
ATOM    136  CA  THR   136     -15.326  21.441  43.253  1.00 25.00           C
ATOM    137  CA  LEU   137     -19.086  20.855  42.818  1.00 25.00           C
ATOM    138  CA  GLY   138     -19.184  17.889  45.262  1.00 25.00           C
ATOM    139  CA  PHE   139     -17.534  19.043  48.451  1.00 25.00           C
ATOM    140  CA  GLU   140     -15.431  16.837  50.774  1.00 25.00           C
ATOM    141  CA  ILE   141     -13.647  19.932  51.982  1.00 25.00           C
ATOM    142  CA  THR   142     -11.481  18.848  54.893  1.00 25.00           C
ATOM    143  CA  ILE   143      -9.807  22.252  54.443  1.00 25.00           C
TER
END
