
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  143 (  143),  selected  143 , name T0338TS393_1-D1
# Molecule2: number of CA atoms  143 ( 1129),  selected  143 , name T0338_D1.pdb
# PARAMETERS: T0338TS393_1-D1.T0338_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    68        22 - 89          4.93    18.96
  LCS_AVERAGE:     37.65

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    28        24 - 51          1.92    17.44
  LCS_AVERAGE:     13.02

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    25        24 - 48          0.86    17.17
  LCS_AVERAGE:     10.37

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  143
LCS_GDT     A       1     A       1      4    5   22     4    4    4    4    4    5    7    7   11   13   15   17   19   21   21   24   29   39   46   51 
LCS_GDT     S       2     S       2      4    5   22     4    4    4    4    6    9   14   16   16   16   17   18   24   29   33   38   45   53   56   60 
LCS_GDT     S       3     S       3      5    9   22     4    4    4    7    8   12   14   16   16   16   18   30   34   37   39   42   46   53   56   60 
LCS_GDT     R       4     R       4      5    9   22     4    4    4    7    9   12   14   16   16   16   28   30   34   37   39   42   46   53   56   60 
LCS_GDT     W       5     W       5      5    9   22     3    4    4    7    9   12   14   16   16   16   18   23   33   37   39   42   46   53   56   60 
LCS_GDT     F       6     F       6      5    9   22     3    4    4    7    9   12   14   17   21   24   28   30   34   37   39   42   46   53   56   60 
LCS_GDT     F       7     F       7      5   10   22     3    4    4    6    7   12   14   17   21   24   28   30   34   37   39   42   46   53   56   60 
LCS_GDT     T       8     T       8      9   10   22     2    7   10   12   12   12   14   16   16   17   21   24   28   30   33   42   46   50   52   55 
LCS_GDT     R       9     R       9      9   10   22     5    7   10   12   12   12   14   16   16   17   21   25   28   37   39   42   46   50   52   57 
LCS_GDT     E      10     E      10      9   10   22     5    7   10   12   12   12   14   16   16   24   28   30   34   37   39   42   46   50   56   60 
LCS_GDT     Q      11     Q      11      9   10   22     5    7   10   12   12   12   14   17   21   24   28   30   34   37   39   42   46   53   56   60 
LCS_GDT     L      12     L      12      9   10   22     5    7   10   12   12   12   14   16   21   24   28   30   34   37   39   42   46   53   56   60 
LCS_GDT     E      13     E      13      9   10   22     5    7   10   12   12   12   14   17   21   24   28   30   34   37   39   42   46   53   56   60 
LCS_GDT     N      14     N      14      9   10   22     3    7   10   12   12   12   14   17   21   24   28   30   34   37   39   42   46   53   56   60 
LCS_GDT     T      15     T      15      9   10   22     3    7   10   12   12   12   14   17   21   24   28   30   34   37   39   42   46   53   56   60 
LCS_GDT     P      16     P      16      9   10   31     0    7   10   12   12   12   14   16   16   17   23   26   28   35   39   42   46   53   56   60 
LCS_GDT     S      17     S      17      3   10   31     0    3    3    5    5   10   14   16   16   16   18   20   24   29   32   36   44   49   51   60 
LCS_GDT     R      18     R      18      3    4   31     0    3    3    4    5    5    7    9   10   12   17   23   28   31   35   40   45   53   56   60 
LCS_GDT     R      19     R      19      3    4   31     1    3    3    4    5    9   14   18   21   24   26   28   30   31   35   40   45   53   56   60 
LCS_GDT     C      20     C      20      3    5   31     3    4    4    5    8    9   14   18   23   27   29   29   30   31   35   42   46   53   56   60 
LCS_GDT     G      21     G      21      3    5   67     3    4    4    5    8   11   15   18   23   27   29   29   30   33   41   49   54   62   69   76 
LCS_GDT     V      22     V      22      3    5   68     3    3    3    5    8   11   15   22   24   30   39   48   54   60   67   71   75   77   78   80 
LCS_GDT     E      23     E      23      3   26   68     3    4    4    7   12   25   34   40   47   54   57   61   65   69   70   72   75   77   78   81 
LCS_GDT     A      24     A      24     25   28   68    20   22   24   32   34   39   42   47   51   54   57   61   65   69   70   72   75   77   79   81 
LCS_GDT     D      25     D      25     25   28   68    20   22   24   32   34   39   42   47   51   54   57   61   65   69   70   72   75   77   79   81 
LCS_GDT     K      26     K      26     25   28   68    20   22   24   32   34   39   42   47   51   54   57   61   65   69   70   72   75   77   79   81 
LCS_GDT     E      27     E      27     25   28   68    20   22   24   32   34   39   42   47   51   54   57   61   65   69   70   72   75   77   79   81 
LCS_GDT     L      28     L      28     25   28   68    20   22   24   32   34   39   42   47   51   54   57   61   65   69   70   72   75   77   79   81 
LCS_GDT     S      29     S      29     25   28   68    20   22   24   32   34   39   42   47   51   54   57   61   65   69   70   72   75   77   79   81 
LCS_GDT     C      30     C      30     25   28   68    20   22   24   32   34   39   42   47   51   54   57   61   65   69   70   72   75   77   79   81 
LCS_GDT     R      31     R      31     25   28   68    20   22   24   32   34   39   42   47   51   54   57   61   65   69   70   72   75   77   79   81 
LCS_GDT     Q      32     Q      32     25   28   68    20   22   24   32   34   39   42   47   51   54   57   61   65   69   70   72   75   77   79   81 
LCS_GDT     Q      33     Q      33     25   28   68    20   22   24   32   34   39   42   47   51   54   57   61   65   69   70   72   75   77   79   81 
LCS_GDT     A      34     A      34     25   28   68    20   22   24   32   34   39   42   47   51   54   57   61   65   69   70   72   75   77   79   81 
LCS_GDT     A      35     A      35     25   28   68    20   22   24   32   34   39   42   47   51   54   57   61   65   69   70   72   75   77   79   81 
LCS_GDT     N      36     N      36     25   28   68    20   22   24   32   34   39   42   47   51   54   57   61   65   69   70   72   75   77   79   81 
LCS_GDT     L      37     L      37     25   28   68    20   22   24   32   34   39   42   47   51   54   57   61   65   69   70   72   75   77   79   81 
LCS_GDT     I      38     I      38     25   28   68    20   22   24   32   34   39   42   47   51   54   57   61   65   69   70   72   75   77   79   81 
LCS_GDT     Q      39     Q      39     25   28   68    20   22   24   32   34   39   42   47   51   54   57   61   65   69   70   72   75   77   79   81 
LCS_GDT     E      40     E      40     25   28   68    20   22   24   32   34   39   42   47   51   54   57   61   65   69   70   72   75   77   79   81 
LCS_GDT     M      41     M      41     25   28   68    20   22   24   32   34   39   42   47   51   54   57   61   65   69   70   72   75   77   79   81 
LCS_GDT     G      42     G      42     25   28   68    20   22   24   32   34   39   42   47   51   54   57   61   65   69   70   72   75   77   79   81 
LCS_GDT     Q      43     Q      43     25   28   68    20   22   24   32   34   39   42   47   51   54   57   61   65   69   70   72   75   77   78   81 
LCS_GDT     R      44     R      44     25   28   68    20   22   24   32   34   39   42   47   51   54   57   61   65   69   70   72   75   77   79   81 
LCS_GDT     L      45     L      45     25   28   68     3   13   24   32   34   39   42   47   51   54   57   61   65   69   70   72   75   77   79   81 
LCS_GDT     N      46     N      46     25   28   68     3   14   24   32   34   39   42   47   51   54   57   61   65   69   70   72   75   77   78   81 
LCS_GDT     V      47     V      47     25   28   68     3   13   24   32   34   39   42   47   51   54   57   61   65   69   70   72   75   77   79   81 
LCS_GDT     S      48     S      48     25   28   68     3    5   24   32   34   39   42   47   51   54   57   61   65   69   70   72   75   77   79   81 
LCS_GDT     Q      49     Q      49     18   28   68    15   17   18   18   20   31   42   47   51   54   57   61   65   69   70   72   75   77   79   81 
LCS_GDT     L      50     L      50     18   28   68    15   17   18   21   32   38   41   47   50   54   57   61   65   69   70   72   75   77   79   81 
LCS_GDT     T      51     T      51     18   28   68    15   17   18   18   21   23   30   42   47   54   57   61   64   69   70   72   75   77   79   81 
LCS_GDT     I      52     I      52     18   20   68    15   17   18   18   21   23   27   45   51   54   57   61   65   69   70   72   75   77   79   81 
LCS_GDT     N      53     N      53     18   20   68    15   17   18   29   34   39   42   47   51   54   57   61   65   69   70   72   75   77   79   81 
LCS_GDT     T      54     T      54     18   20   68    15   17   20   28   34   39   42   47   51   54   57   61   65   69   70   72   75   77   79   81 
LCS_GDT     A      55     A      55     18   20   68    15   17   18   18   21   24   37   45   51   54   57   61   65   69   70   72   75   77   79   81 
LCS_GDT     I      56     I      56     18   20   68    15   17   18   18   21   30   42   47   51   54   57   61   65   69   70   72   75   77   79   81 
LCS_GDT     V      57     V      57     18   20   68    15   17   18   32   34   39   42   47   51   54   57   61   65   69   70   72   75   77   79   81 
LCS_GDT     Y      58     Y      58     18   20   68    15   17   24   32   34   39   42   47   51   54   57   61   65   69   70   72   75   77   79   81 
LCS_GDT     M      59     M      59     18   20   68    15   17   18   18   21   31   41   47   51   54   57   61   65   69   70   72   75   77   79   81 
LCS_GDT     H      60     H      60     18   20   68    15   17   18   18   21   30   37   45   51   54   57   61   65   69   70   72   75   77   79   81 
LCS_GDT     R      61     R      61     18   20   68    15   17   18   18   34   39   42   47   51   54   57   61   65   69   70   72   75   77   79   81 
LCS_GDT     F      62     F      62     18   20   68    15   17   18   32   34   39   42   47   51   54   57   61   65   69   70   72   75   77   79   81 
LCS_GDT     Y      63     Y      63     18   20   68    15   17   18   21   24   25   37   45   48   54   57   61   65   69   70   72   75   77   79   81 
LCS_GDT     M      64     M      64     18   20   68     6   17   18   18   21   23   23   27   45   50   57   60   65   69   70   72   75   77   79   81 
LCS_GDT     H      65     H      65     18   20   68     3   17   18   18   25   39   42   47   51   54   57   61   65   69   70   72   75   77   79   81 
LCS_GDT     H      66     H      66     18   20   68     3    5   20   32   34   39   42   47   51   54   57   61   65   69   70   72   75   77   79   81 
LCS_GDT     S      67     S      67      5   20   68     3    5   10   26   33   39   42   47   51   54   57   61   65   69   70   72   75   77   79   81 
LCS_GDT     F      68     F      68      5    8   68    12   22   24   32   34   39   42   47   51   54   57   61   65   69   70   72   75   77   79   81 
LCS_GDT     T      69     T      69      5    8   68     3    4   12   21   31   39   42   47   51   54   57   61   65   69   70   72   75   77   79   81 
LCS_GDT     K      70     K      70      5    8   68     3    4    5   13   16   27   36   44   51   54   57   61   65   69   70   72   75   77   79   81 
LCS_GDT     F      71     F      71      5    8   68     3    4    7   13   20   34   40   47   51   54   57   61   65   69   70   72   75   77   79   81 
LCS_GDT     N      72     N      72      4   19   68     3    4    9   18   32   39   42   47   51   54   57   61   65   69   70   72   75   77   79   81 
LCS_GDT     K      73     K      73     16   22   68    11   15   22   32   34   39   42   47   51   54   57   61   65   69   70   72   75   77   79   81 
LCS_GDT     N      74     N      74     16   22   68    11   15   16   16   22   24   31   40   45   54   57   61   65   69   70   72   75   77   79   81 
LCS_GDT     I      75     I      75     16   22   68    11   15   16   16   18   22   31   40   45   52   57   61   65   69   70   72   75   77   79   81 
LCS_GDT     I      76     I      76     16   22   68    11   15   16   16   29   39   42   47   51   54   57   61   65   69   70   72   75   77   79   81 
LCS_GDT     S      77     S      77     16   22   68    11   15   16   16   18   20   22   39   47   53   57   61   65   69   70   72   75   77   79   81 
LCS_GDT     S      78     S      78     16   22   68    11   15   16   16   18   20   23   40   48   54   57   61   65   69   70   72   75   77   79   81 
LCS_GDT     T      79     T      79     16   22   68    11   15   22   32   34   39   42   47   51   54   57   61   65   69   70   72   75   77   79   81 
LCS_GDT     A      80     A      80     16   22   68    11   15   16   16   18   23   32   42   47   52   57   60   65   69   70   72   75   77   79   81 
LCS_GDT     L      81     L      81     16   22   68    11   15   16   16   18   20   22   23   30   42   51   58   65   69   70   72   75   77   79   81 
LCS_GDT     F      82     F      82     16   22   68    11   15   16   17   24   32   40   47   51   54   57   61   65   69   70   72   75   77   79   81 
LCS_GDT     L      83     L      83     16   22   68    11   15   16   16   24   30   40   46   51   54   57   60   65   69   70   72   75   77   79   81 
LCS_GDT     A      84     A      84     16   22   68    11   15   16   16   18   20   22   24   31   37   45   51   57   62   66   68   70   74   77   79 
LCS_GDT     A      85     A      85     16   22   68    10   15   16   16   18   20   22   24   30   41   51   58   63   66   70   72   75   77   79   81 
LCS_GDT     K      86     K      86     16   22   68     9   15   16   16   23   34   39   46   51   54   57   61   65   69   70   72   75   77   79   81 
LCS_GDT     V      87     V      87     16   22   68    11   15   16   16   18   20   25   30   37   45   48   51   57   61   66   68   69   71   74   76 
LCS_GDT     E      88     E      88     16   22   68     7   15   16   16   17   19   22   23   24   29   38   43   48   54   60   64   67   68   71   76 
LCS_GDT     E      89     E      89      4   22   68     3    4    4    7   11   20   22   23   23   24   28   35   45   51   55   61   64   67   71   76 
LCS_GDT     Q      90     Q      90      4   22   36     3    4    7   15   18   20   22   23   23   24   28   30   34   37   49   54   64   67   70   76 
LCS_GDT     A      91     A      91      4   22   36     3    4    5   15   18   20   22   23   23   24   30   45   56   63   65   72   75   77   79   81 
LCS_GDT     R      92     R      92      4   22   32     3    3    7   16   18   20   22   23   23   24   25   30   34   46   58   72   75   77   79   81 
LCS_GDT     K      93     K      93      4   22   32     3    3    4   13   17   20   22   23   28   31   40   50   51   57   63   69   73   77   79   81 
LCS_GDT     L      94     L      94     12   22   48    11   12   12   13   17   20   22   25   29   36   44   50   55   66   69   70   72   74   79   81 
LCS_GDT     E      95     E      95     12   13   48    11   12   12   13   13   16   21   23   23   24   28   34   40   46   54   56   58   60   67   71 
LCS_GDT     H      96     H      96     12   13   48    11   12   12   13   13   15   17   19   22   24   30   40   44   50   54   56   58   63   78   79 
LCS_GDT     V      97     V      97     12   13   48    11   12   12   17   23   25   31   39   47   54   57   61   64   69   70   72   75   77   79   81 
LCS_GDT     I      98     I      98     12   13   48    11   12   12   13   13   15   22   24   28   35   44   49   59   63   69   70   72   74   78   81 
LCS_GDT     K      99     K      99     12   13   48    11   12   12   13   13   17   21   23   28   32   38   43   48   51   60   67   71   74   78   79 
LCS_GDT     V     100     V     100     12   13   48    11   12   12   13   13   17   21   30   41   46   53   60   63   66   70   71   75   77   79   81 
LCS_GDT     A     101     A     101     12   13   48    11   12   12   16   21   23   23   25   30   35   39   45   49   58   65   68   72   74   79   81 
LCS_GDT     H     102     H     102     12   13   48    11   12   12   13   13   15   20   25   30   35   39   43   48   51   54   59   64   70   74   79 
LCS_GDT     A     103     A     103     12   13   48    11   12   12   13   13   15   20   25   30   35   39   44   49   56   62   67   71   74   79   81 
LCS_GDT     C     104     C     104     12   13   48    11   12   12   16   21   23   23   25   30   35   39   43   48   51   54   63   69   73   78   81 
LCS_GDT     L     105     L     105     12   13   48     5   12   12   13   13   15   17   21   28   34   39   43   48   51   53   56   58   63   68   73 
LCS_GDT     H     106     H     106      5   13   48     3    4    5    6    9   13   18   25   30   35   39   43   48   51   54   56   58   63   68   73 
LCS_GDT     P     107     P     107      5    6   48     3    4    5    6    7    9   15   22   28   34   39   43   48   51   54   56   58   63   68   73 
LCS_GDT     L     108     L     108      5    6   48     3    4    5    6    8   10   15   22   28   34   39   43   48   51   54   56   58   63   67   71 
LCS_GDT     E     109     E     109      5    6   48     3    4    5    6    9   12   18   23   30   35   39   43   48   51   54   56   58   63   67   73 
LCS_GDT     P     110     P     110      4    6   48     3    4    4    6    9   12   18   23   30   35   39   43   48   51   54   56   58   63   67   73 
LCS_GDT     L     111     L     111      4    5   48     3    4    4    5    9   12   16   21   28   34   39   43   48   51   53   56   58   63   67   73 
LCS_GDT     L     112     L     112      4    5   48     3    4    4    5    8   10   15   20   26   30   35   41   46   51   53   55   58   63   67   71 
LCS_GDT     D     113     D     113      4    5   48     4    4    4    5    9   12   18   25   30   35   39   43   48   51   54   56   58   63   67   73 
LCS_GDT     T     114     T     114      4    5   48     4    4    4    5    5    5    6   14   21   25   30   36   44   51   54   56   58   63   68   73 
LCS_GDT     K     115     K     115      4   24   48     4    4    4    5    5    7   24   29   30   32   35   42   48   51   54   56   58   63   67   73 
LCS_GDT     C     116     C     116     23   24   48    12   20   21   23   24   25   26   29   30   35   39   43   48   51   54   56   58   62   67   71 
LCS_GDT     D     117     D     117     23   24   48    14   20   21   23   24   25   26   29   30   32   36   43   48   51   54   56   58   63   67   73 
LCS_GDT     A     118     A     118     23   24   48    14   20   21   23   24   25   26   29   30   32   35   36   47   51   54   56   58   61   67   71 
LCS_GDT     Y     119     Y     119     23   24   48    14   20   21   23   24   25   26   29   30   35   39   43   48   51   54   56   58   63   67   73 
LCS_GDT     L     120     L     120     23   24   48    14   20   21   23   24   25   26   29   30   35   39   43   48   51   54   56   58   63   67   73 
LCS_GDT     Q     121     Q     121     23   24   48    14   20   21   23   24   25   26   29   30   34   39   43   48   51   54   56   58   63   67   73 
LCS_GDT     Q     122     Q     122     23   24   48    14   20   21   23   24   25   26   29   30   35   39   43   48   51   54   56   58   63   67   73 
LCS_GDT     T     123     T     123     23   24   48    14   20   21   23   24   25   26   29   30   35   39   43   48   51   54   56   58   63   67   73 
LCS_GDT     R     124     R     124     23   24   48    14   20   21   23   24   25   26   29   30   35   39   43   48   51   54   56   58   63   68   73 
LCS_GDT     E     125     E     125     23   24   48    14   20   21   23   24   25   26   29   30   35   39   43   48   51   54   56   58   63   69   75 
LCS_GDT     L     126     L     126     23   24   48    14   20   21   23   24   25   26   29   30   35   39   43   48   51   56   63   66   70   76   79 
LCS_GDT     V     127     V     127     23   24   48    14   20   21   23   24   25   26   29   32   35   44   49   55   56   62   68   71   74   76   79 
LCS_GDT     I     128     I     128     23   24   48    14   20   21   23   24   25   26   29   33   35   44   49   59   61   64   69   71   74   78   79 
LCS_GDT     L     129     L     129     23   24   48    14   20   21   23   24   25   28   29   34   43   49   54   61   65   69   70   72   74   78   81 
LCS_GDT     E     130     E     130     23   24   48    14   20   21   23   24   25   28   29   38   46   53   56   61   66   69   70   72   74   78   81 
LCS_GDT     T     131     T     131     23   24   48    10   20   21   23   25   27   31   37   42   52   56   61   63   66   69   70   72   74   78   81 
LCS_GDT     I     132     I     132     23   24   48    14   20   21   23   24   27   37   42   47   54   57   61   64   66   69   70   72   75   78   81 
LCS_GDT     M     133     M     133     23   24   48    10   20   21   23   24   25   32   42   47   54   57   61   64   69   70   72   75   77   79   81 
LCS_GDT     L     134     L     134     23   24   48    10   20   21   23   24   25   26   33   45   54   57   61   64   69   70   72   75   77   79   81 
LCS_GDT     Q     135     Q     135     23   24   48     9   20   21   23   24   25   36   45   49   54   57   61   65   69   70   72   75   77   79   81 
LCS_GDT     T     136     T     136     23   24   48     9   20   21   23   24   25   26   47   51   54   57   61   65   69   70   72   75   77   79   81 
LCS_GDT     L     137     L     137     23   24   48     9   12   21   23   23   25   26   29   30   34   57   61   65   69   70   72   75   77   79   81 
LCS_GDT     G     138     G     138     23   24   48     3    3   20   23   24   25   26   29   37   44   53   60   65   69   70   72   75   77   79   81 
LCS_GDT     F     139     F     139      3   24   48     3    3    4    6    6   13   17   21   28   33   39   43   50   54   62   70   75   77   79   81 
LCS_GDT     E     140     E     140      3    5   48     3    3    4    7   11   23   24   25   30   35   39   43   48   52   58   68   73   77   79   81 
LCS_GDT     I     141     I     141      3    5   48     3    3    4    6    6   15   24   25   29   35   38   43   50   54   62   70   75   77   79   81 
LCS_GDT     T     142     T     142      3    4   48     3    3    4    6    6    8   10   24   28   31   33   35   39   47   54   62   66   72   79   81 
LCS_GDT     I     143     I     143      3    4   35     3    3    3    3    3    4    7   11   14   20   27   40   48   52   58   63   72   77   79   81 
LCS_AVERAGE  LCS_A:  20.35  (  10.37   13.02   37.65 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     20     22     24     32     34     39     42     47     51     54     57     61     65     69     70     72     75     77     79     81 
GDT PERCENT_CA  13.99  15.38  16.78  22.38  23.78  27.27  29.37  32.87  35.66  37.76  39.86  42.66  45.45  48.25  48.95  50.35  52.45  53.85  55.24  56.64
GDT RMS_LOCAL    0.25   0.41   0.63   1.32   1.44   1.75   2.09   2.41   2.79   2.98   3.15   3.42   3.80   4.07   4.19   4.55   4.91   5.14   5.77   5.55
GDT RMS_ALL_CA  17.01  17.16  17.11  17.77  17.76  17.96  17.97  18.00  18.29  18.21  17.73  17.61  18.30  18.02  18.09  18.06  18.03  18.00  17.68  17.82

#      Molecule1      Molecule2       DISTANCE
LGA    A       1      A       1         36.226
LGA    S       2      S       2         40.103
LGA    S       3      S       3         39.657
LGA    R       4      R       4         37.060
LGA    W       5      W       5         29.562
LGA    F       6      F       6         30.947
LGA    F       7      F       7         32.114
LGA    T       8      T       8         30.912
LGA    R       9      R       9         31.185
LGA    E      10      E      10         34.414
LGA    Q      11      Q      11         29.770
LGA    L      12      L      12         23.936
LGA    E      13      E      13         27.342
LGA    N      14      N      14         29.715
LGA    T      15      T      15         26.077
LGA    P      16      P      16         28.268
LGA    S      17      S      17         27.143
LGA    R      18      R      18         25.420
LGA    R      19      R      19         26.274
LGA    C      20      C      20         23.509
LGA    G      21      G      21         19.264
LGA    V      22      V      22         12.781
LGA    E      23      E      23          6.570
LGA    A      24      A      24          1.512
LGA    D      25      D      25          2.623
LGA    K      26      K      26          1.931
LGA    E      27      E      27          0.714
LGA    L      28      L      28          2.346
LGA    S      29      S      29          2.624
LGA    C      30      C      30          1.287
LGA    R      31      R      31          1.519
LGA    Q      32      Q      32          2.740
LGA    Q      33      Q      33          2.349
LGA    A      34      A      34          0.807
LGA    A      35      A      35          2.043
LGA    N      36      N      36          2.830
LGA    L      37      L      37          1.883
LGA    I      38      I      38          0.849
LGA    Q      39      Q      39          2.475
LGA    E      40      E      40          2.830
LGA    M      41      M      41          1.178
LGA    G      42      G      42          1.619
LGA    Q      43      Q      43          3.142
LGA    R      44      R      44          2.329
LGA    L      45      L      45          1.292
LGA    N      46      N      46          2.224
LGA    V      47      V      47          3.251
LGA    S      48      S      48          3.189
LGA    Q      49      Q      49          3.613
LGA    L      50      L      50          3.865
LGA    T      51      T      51          6.415
LGA    I      52      I      52          5.015
LGA    N      53      N      53          1.403
LGA    T      54      T      54          3.458
LGA    A      55      A      55          4.530
LGA    I      56      I      56          3.545
LGA    V      57      V      57          2.332
LGA    Y      58      Y      58          2.527
LGA    M      59      M      59          3.963
LGA    H      60      H      60          4.572
LGA    R      61      R      61          2.968
LGA    F      62      F      62          1.691
LGA    Y      63      Y      63          5.284
LGA    M      64      M      64          6.094
LGA    H      65      H      65          3.019
LGA    H      66      H      66          1.617
LGA    S      67      S      67          3.498
LGA    F      68      F      68          1.946
LGA    T      69      T      69          2.932
LGA    K      70      K      70          5.227
LGA    F      71      F      71          3.880
LGA    N      72      N      72          2.731
LGA    K      73      K      73          1.733
LGA    N      74      N      74          6.001
LGA    I      75      I      75          5.991
LGA    I      76      I      76          2.961
LGA    S      77      S      77          5.476
LGA    S      78      S      78          5.806
LGA    T      79      T      79          1.868
LGA    A      80      A      80          6.336
LGA    L      81      L      81          8.389
LGA    F      82      F      82          3.878
LGA    L      83      L      83          4.999
LGA    A      84      A      84         11.030
LGA    A      85      A      85         10.167
LGA    K      86      K      86          5.084
LGA    V      87      V      87         11.778
LGA    E      88      E      88         15.723
LGA    E      89      E      89         17.987
LGA    Q      90      Q      90         18.009
LGA    A      91      A      91         13.352
LGA    R      92      R      92         13.288
LGA    K      93      K      93         12.430
LGA    L      94      L      94         11.746
LGA    E      95      E      95         16.988
LGA    H      96      H      96         12.954
LGA    V      97      V      97          8.123
LGA    I      98      I      98         14.389
LGA    K      99      K      99         15.988
LGA    V     100      V     100         10.391
LGA    A     101      A     101         14.560
LGA    H     102      H     102         20.017
LGA    A     103      A     103         16.856
LGA    C     104      C     104         17.045
LGA    L     105      L     105         23.943
LGA    H     106      H     106         26.877
LGA    P     107      P     107         27.589
LGA    L     108      L     108         33.733
LGA    E     109      E     109         34.441
LGA    P     110      P     110         36.628
LGA    L     111      L     111         33.544
LGA    L     112      L     112         35.596
LGA    D     113      D     113         36.513
LGA    T     114      T     114         30.213
LGA    K     115      K     115         33.971
LGA    C     116      C     116         37.893
LGA    D     117      D     117         35.632
LGA    A     118      A     118         32.102
LGA    Y     119      Y     119         30.712
LGA    L     120      L     120         30.498
LGA    Q     121      Q     121         27.448
LGA    Q     122      Q     122         24.265
LGA    T     123      T     123         24.371
LGA    R     124      R     124         23.025
LGA    E     125      E     125         19.578
LGA    L     126      L     126         17.786
LGA    V     127      V     127         17.875
LGA    I     128      I     128         15.058
LGA    L     129      L     129         12.172
LGA    E     130      E     130         12.248
LGA    T     131      T     131         10.746
LGA    I     132      I     132          7.814
LGA    M     133      M     133          6.888
LGA    L     134      L     134          7.885
LGA    Q     135      Q     135          4.604
LGA    T     136      T     136          3.945
LGA    L     137      L     137          7.238
LGA    G     138      G     138          8.790
LGA    F     139      F     139         12.700
LGA    E     140      E     140         13.005
LGA    I     141      I     141         11.795
LGA    T     142      T     142         15.916
LGA    I     143      I     143         13.659

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  143  143    4.0     47    2.41    30.245    26.408     1.870

LGA_LOCAL      RMSD =  2.414  Number of atoms =   47  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 18.148  Number of atoms =  143 
Std_ALL_ATOMS  RMSD = 15.224  (standard rmsd on all 143 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.862377 * X  +  -0.463107 * Y  +  -0.204545 * Z  + -22.685335
  Y_new =  -0.206021 * X  +   0.048040 * Y  +  -0.977368 * Z  +  21.205385
  Z_new =   0.462452 * X  +   0.885000 * Y  +  -0.053981 * Z  +  58.254871 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   1.631716   -1.509876  [ DEG:    93.4905    -86.5095 ]
  Theta =  -0.480758   -2.660834  [ DEG:   -27.5454   -152.4546 ]
  Phi   =  -0.234504    2.907089  [ DEG:   -13.4361    166.5639 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0338TS393_1-D1                               
REMARK     2: T0338_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0338TS393_1-D1.T0338_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  143  143   4.0   47   2.41  26.408    15.22
REMARK  ---------------------------------------------------------- 
MOLECULE T0338TS393_1-D1
PFRMAT TS
TARGET T0338
MODEL 1
PARENT N/A
ATOM      1  CA  ALA     1     -35.119  34.946  80.128  1.00 25.00           C
ATOM      2  CA  SER     2     -32.302  37.428  79.385  1.00 25.00           C
ATOM      3  CA  SER     3     -31.666  37.774  75.623  1.00 25.00           C
ATOM      4  CA  ARG     4     -29.266  34.862  75.245  1.00 25.00           C
ATOM      5  CA  TRP     5     -27.916  32.618  72.499  1.00 25.00           C
ATOM      6  CA  PHE     6     -26.141  35.568  70.966  1.00 25.00           C
ATOM      7  CA  PHE     7     -22.449  36.431  70.897  1.00 25.00           C
ATOM      8  CA  THR     8     -20.398  33.408  69.664  1.00 25.00           C
ATOM      9  CA  ARG     9     -17.138  34.538  71.335  1.00 25.00           C
ATOM     10  CA  GLU    10     -17.163  33.398  74.990  1.00 25.00           C
ATOM     11  CA  GLN    11     -17.744  29.779  73.884  1.00 25.00           C
ATOM     12  CA  LEU    12     -14.833  30.042  71.410  1.00 25.00           C
ATOM     13  CA  GLU    13     -12.578  31.437  74.174  1.00 25.00           C
ATOM     14  CA  ASN    14     -12.732  28.542  76.581  1.00 25.00           C
ATOM     15  CA  THR    15     -14.703  25.663  75.041  1.00 25.00           C
ATOM     16  CA  PRO    16     -13.248  22.774  77.029  1.00 25.00           C
ATOM     17  CA  SER    17     -12.508  19.471  78.813  1.00 25.00           C
ATOM     18  CA  ARG    18     -11.621  16.125  77.394  1.00 25.00           C
ATOM     19  CA  ARG    19      -9.343  14.215  75.103  1.00 25.00           C
ATOM     20  CA  CYS    20      -6.597  14.722  72.544  1.00 25.00           C
ATOM     21  CA  GLY    21      -3.486  13.092  71.089  1.00 25.00           C
ATOM     22  CA  VAL    22      -1.580  15.189  68.535  1.00 25.00           C
ATOM     23  CA  GLU    23      -0.280  14.339  65.082  1.00 25.00           C
ATOM     24  CA  ALA    24       0.001  17.226  62.621  1.00 25.00           C
ATOM     25  CA  ASP    25       0.774  20.130  64.997  1.00 25.00           C
ATOM     26  CA  LYS    26       0.710  22.584  62.057  1.00 25.00           C
ATOM     27  CA  GLU    27      -2.662  21.169  60.918  1.00 25.00           C
ATOM     28  CA  LEU    28      -4.048  21.548  64.468  1.00 25.00           C
ATOM     29  CA  SER    29      -2.817  25.171  64.590  1.00 25.00           C
ATOM     30  CA  CYS    30      -4.479  25.876  61.213  1.00 25.00           C
ATOM     31  CA  ARG    31      -7.755  24.348  62.479  1.00 25.00           C
ATOM     32  CA  GLN    32      -7.575  26.515  65.632  1.00 25.00           C
ATOM     33  CA  GLN    33      -6.983  29.632  63.485  1.00 25.00           C
ATOM     34  CA  ALA    34      -9.989  28.724  61.293  1.00 25.00           C
ATOM     35  CA  ALA    35     -12.158  28.263  64.415  1.00 25.00           C
ATOM     36  CA  ASN    36     -11.021  31.672  65.739  1.00 25.00           C
ATOM     37  CA  LEU    37     -11.868  33.289  62.371  1.00 25.00           C
ATOM     38  CA  ILE    38     -15.333  31.660  62.433  1.00 25.00           C
ATOM     39  CA  GLN    39     -15.903  32.950  65.994  1.00 25.00           C
ATOM     40  CA  GLU    40     -14.861  36.472  64.910  1.00 25.00           C
ATOM     41  CA  MET    41     -17.274  36.300  61.942  1.00 25.00           C
ATOM     42  CA  GLY    42     -20.099  35.178  64.271  1.00 25.00           C
ATOM     43  CA  GLN    43     -19.326  38.081  66.646  1.00 25.00           C
ATOM     44  CA  ARG    44     -19.391  40.536  63.707  1.00 25.00           C
ATOM     45  CA  LEU    45     -23.027  39.627  63.319  1.00 25.00           C
ATOM     46  CA  ASN    46     -24.466  36.914  65.535  1.00 25.00           C
ATOM     47  CA  VAL    47     -24.726  33.270  64.583  1.00 25.00           C
ATOM     48  CA  SER    48     -26.101  29.906  65.819  1.00 25.00           C
ATOM     49  CA  GLN    49     -28.801  27.313  64.883  1.00 25.00           C
ATOM     50  CA  LEU    50     -27.263  23.806  64.903  1.00 25.00           C
ATOM     51  CA  THR    51     -27.923  23.468  61.146  1.00 25.00           C
ATOM     52  CA  ILE    52     -26.279  26.871  60.527  1.00 25.00           C
ATOM     53  CA  ASN    53     -23.237  25.805  62.594  1.00 25.00           C
ATOM     54  CA  THR    54     -22.984  22.551  60.590  1.00 25.00           C
ATOM     55  CA  ALA    55     -23.162  24.526  57.314  1.00 25.00           C
ATOM     56  CA  ILE    56     -20.399  26.872  58.550  1.00 25.00           C
ATOM     57  CA  VAL    57     -18.228  23.861  59.493  1.00 25.00           C
ATOM     58  CA  TYR    58     -18.791  22.339  56.024  1.00 25.00           C
ATOM     59  CA  MET    59     -17.813  25.658  54.382  1.00 25.00           C
ATOM     60  CA  HIS    60     -14.638  25.806  56.516  1.00 25.00           C
ATOM     61  CA  ARG    61     -13.766  22.215  55.513  1.00 25.00           C
ATOM     62  CA  PHE    62     -14.292  23.091  51.822  1.00 25.00           C
ATOM     63  CA  TYR    63     -12.028  26.157  52.202  1.00 25.00           C
ATOM     64  CA  MET    64      -9.335  23.994  53.856  1.00 25.00           C
ATOM     65  CA  HIS    65      -9.581  21.459  50.997  1.00 25.00           C
ATOM     66  CA  HIS    66      -7.407  23.691  48.746  1.00 25.00           C
ATOM     67  CA  SER    67      -5.020  26.180  50.420  1.00 25.00           C
ATOM     68  CA  PHE    68      -4.195  24.150  53.504  1.00 25.00           C
ATOM     69  CA  THR    69      -0.413  23.975  53.929  1.00 25.00           C
ATOM     70  CA  LYS    70       0.692  27.627  54.237  1.00 25.00           C
ATOM     71  CA  PHE    71      -2.829  29.033  53.992  1.00 25.00           C
ATOM     72  CA  ASN    72      -3.143  32.576  55.442  1.00 25.00           C
ATOM     73  CA  LYS    73      -6.606  31.391  56.530  1.00 25.00           C
ATOM     74  CA  ASN    74      -8.019  29.175  53.743  1.00 25.00           C
ATOM     75  CA  ILE    75     -11.282  28.749  55.704  1.00 25.00           C
ATOM     76  CA  ILE    76     -11.516  32.541  56.187  1.00 25.00           C
ATOM     77  CA  SER    77     -10.952  33.078  52.437  1.00 25.00           C
ATOM     78  CA  SER    78     -13.694  30.528  51.635  1.00 25.00           C
ATOM     79  CA  THR    79     -16.085  32.304  54.042  1.00 25.00           C
ATOM     80  CA  ALA    80     -15.293  35.665  52.387  1.00 25.00           C
ATOM     81  CA  LEU    81     -15.957  34.149  48.933  1.00 25.00           C
ATOM     82  CA  PHE    82     -19.299  32.742  50.166  1.00 25.00           C
ATOM     83  CA  LEU    83     -20.254  36.175  51.570  1.00 25.00           C
ATOM     84  CA  ALA    84     -19.360  37.818  48.228  1.00 25.00           C
ATOM     85  CA  ALA    85     -21.495  35.243  46.363  1.00 25.00           C
ATOM     86  CA  LYS    86     -24.428  35.922  48.731  1.00 25.00           C
ATOM     87  CA  VAL    87     -24.055  39.689  48.152  1.00 25.00           C
ATOM     88  CA  GLU    88     -24.032  39.129  44.364  1.00 25.00           C
ATOM     89  CA  GLU    89     -21.606  40.318  41.690  1.00 25.00           C
ATOM     90  CA  GLN    90     -20.504  36.767  41.156  1.00 25.00           C
ATOM     91  CA  ALA    91     -23.192  34.150  41.492  1.00 25.00           C
ATOM     92  CA  ARG    92     -24.268  31.507  44.010  1.00 25.00           C
ATOM     93  CA  LYS    93     -22.858  30.456  47.384  1.00 25.00           C
ATOM     94  CA  LEU    94     -21.262  29.373  50.606  1.00 25.00           C
ATOM     95  CA  GLU    95     -22.906  27.909  53.741  1.00 25.00           C
ATOM     96  CA  HIS    96     -21.036  30.433  55.930  1.00 25.00           C
ATOM     97  CA  VAL    97     -22.186  33.294  53.658  1.00 25.00           C
ATOM     98  CA  ILE    98     -25.801  32.048  53.879  1.00 25.00           C
ATOM     99  CA  LYS    99     -25.541  31.895  57.696  1.00 25.00           C
ATOM    100  CA  VAL   100     -24.161  35.466  57.771  1.00 25.00           C
ATOM    101  CA  ALA   101     -27.046  36.653  55.549  1.00 25.00           C
ATOM    102  CA  HIS   102     -29.568  34.942  57.868  1.00 25.00           C
ATOM    103  CA  ALA   103     -27.952  36.622  60.906  1.00 25.00           C
ATOM    104  CA  CYS   104     -28.136  40.023  59.154  1.00 25.00           C
ATOM    105  CA  LEU   105     -31.876  40.425  58.358  1.00 25.00           C
ATOM    106  CA  HIS   106     -33.900  43.442  59.571  1.00 25.00           C
ATOM    107  CA  PRO   107     -35.563  46.735  58.483  1.00 25.00           C
ATOM    108  CA  LEU   108     -38.761  44.752  58.170  1.00 25.00           C
ATOM    109  CA  GLU   109     -39.849  43.179  61.523  1.00 25.00           C
ATOM    110  CA  PRO   110     -42.836  40.887  62.252  1.00 25.00           C
ATOM    111  CA  LEU   111     -41.848  37.326  62.875  1.00 25.00           C
ATOM    112  CA  LEU   112     -42.573  33.616  62.263  1.00 25.00           C
ATOM    113  CA  ASP   113     -42.905  34.276  58.505  1.00 25.00           C
ATOM    114  CA  THR   114     -39.571  36.162  58.517  1.00 25.00           C
ATOM    115  CA  LYS   115     -37.903  33.251  60.365  1.00 25.00           C
ATOM    116  CA  CYS   116     -39.322  30.781  57.805  1.00 25.00           C
ATOM    117  CA  ASP   117     -38.003  32.954  54.941  1.00 25.00           C
ATOM    118  CA  ALA   118     -34.548  33.074  56.589  1.00 25.00           C
ATOM    119  CA  TYR   119     -34.573  29.264  56.975  1.00 25.00           C
ATOM    120  CA  LEU   120     -35.526  28.871  53.287  1.00 25.00           C
ATOM    121  CA  GLN   121     -32.676  31.222  52.276  1.00 25.00           C
ATOM    122  CA  GLN   122     -30.219  29.203  54.409  1.00 25.00           C
ATOM    123  CA  THR   123     -31.428  25.958  52.774  1.00 25.00           C
ATOM    124  CA  ARG   124     -30.971  27.509  49.302  1.00 25.00           C
ATOM    125  CA  GLU   125     -27.427  28.621  50.238  1.00 25.00           C
ATOM    126  CA  LEU   126     -26.620  25.088  51.479  1.00 25.00           C
ATOM    127  CA  VAL   127     -27.951  23.608  48.206  1.00 25.00           C
ATOM    128  CA  ILE   128     -25.801  26.059  46.196  1.00 25.00           C
ATOM    129  CA  LEU   129     -22.724  25.093  48.261  1.00 25.00           C
ATOM    130  CA  GLU   130     -23.448  21.382  47.648  1.00 25.00           C
ATOM    131  CA  THR   131     -23.779  22.043  43.890  1.00 25.00           C
ATOM    132  CA  ILE   132     -20.446  23.928  43.903  1.00 25.00           C
ATOM    133  CA  MET   133     -18.779  21.017  45.750  1.00 25.00           C
ATOM    134  CA  LEU   134     -20.197  18.547  43.191  1.00 25.00           C
ATOM    135  CA  GLN   135     -18.878  20.720  40.326  1.00 25.00           C
ATOM    136  CA  THR   136     -15.424  20.841  41.975  1.00 25.00           C
ATOM    137  CA  LEU   137     -15.448  17.031  42.361  1.00 25.00           C
ATOM    138  CA  GLY   138     -12.810  17.201  39.567  1.00 25.00           C
ATOM    139  CA  PHE   139     -10.517  19.557  41.477  1.00 25.00           C
ATOM    140  CA  GLU   140     -10.826  18.792  45.192  1.00 25.00           C
ATOM    141  CA  ILE   141     -13.986  18.619  47.197  1.00 25.00           C
ATOM    142  CA  THR   142     -13.656  14.889  46.647  1.00 25.00           C
ATOM    143  CA  ILE   143     -17.415  14.215  46.341  1.00 25.00           C
TER
END
