
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  143 (  143),  selected  143 , name T0338TS393_2-D1
# Molecule2: number of CA atoms  143 ( 1129),  selected  143 , name T0338_D1.pdb
# PARAMETERS: T0338TS393_2-D1.T0338_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    53        37 - 89          4.97    22.04
  LCS_AVERAGE:     30.29

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    28        20 - 47          1.71    15.90
  LONGEST_CONTINUOUS_SEGMENT:    28        21 - 48          1.94    15.95
  LCS_AVERAGE:     13.03

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    24        24 - 47          0.91    15.99
  LCS_AVERAGE:     10.63

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  143
LCS_GDT     A       1     A       1      3    4   21     0    3    3    3    4    4    8    8   12   14   16   19   20   20   21   21   21   21   22   26 
LCS_GDT     S       2     S       2      3    4   21     3    3    3    5    5    7    8   11   13   18   19   24   28   31   34   35   38   40   41   45 
LCS_GDT     S       3     S       3      3    4   21     3    3    3    5    5    7    8   11   13   16   19   24   26   31   34   34   35   40   43   45 
LCS_GDT     R       4     R       4      3    5   21     3    3    3    4    7    8    9   12   14   18   21   24   28   31   34   35   38   40   43   45 
LCS_GDT     W       5     W       5      4    5   21     3    3    4    4    7    8    9   12   14   18   21   24   28   31   34   35   38   40   43   45 
LCS_GDT     F       6     F       6      4    5   21     3    3    4    5    7    8    9   12   14   18   21   24   28   31   34   35   38   40   43   45 
LCS_GDT     F       7     F       7      4    5   21     3    3    4    5    7    8    9   12   14   18   21   24   28   31   34   35   38   40   43   45 
LCS_GDT     T       8     T       8      4    7   21     1    3    4    7    7    8    9   12   13   15   17   20   25   29   31   34   35   38   43   45 
LCS_GDT     R       9     R       9      5    7   21     5    5    6    7    7    8    9   12   13   15   17   20   25   29   31   34   35   38   43   45 
LCS_GDT     E      10     E      10      5    7   21     5    5    6    7    7    8    9   12   13   15   17   20   25   29   31   34   35   36   40   45 
LCS_GDT     Q      11     Q      11      5    7   21     5    5    6    7    7    8    9   12   13   15   17   20   25   29   31   34   35   36   43   45 
LCS_GDT     L      12     L      12      5    7   21     5    5    6    7    7    8    9   12   13   15   17   20   25   29   31   34   35   38   43   45 
LCS_GDT     E      13     E      13      5    7   21     5    5    6    7    7    8    9   12   13   15   17   20   25   29   31   34   35   49   55   66 
LCS_GDT     N      14     N      14      4    7   21     3    3    4    5    7    8    9    9   13   15   17   20   25   29   35   39   46   50   60   72 
LCS_GDT     T      15     T      15      4    6   42     3    3    4    5    6    8    9   13   15   20   23   32   35   39   52   58   61   67   74   81 
LCS_GDT     P      16     P      16      4    6   43     3    3    4    5    6    8   12   18   24   28   30   33   40   45   52   58   66   71   80   86 
LCS_GDT     S      17     S      17      4    6   44     3    3    4    5    6    7    8    9   14   19   31   36   43   50   56   63   70   75   83   86 
LCS_GDT     R      18     R      18      3    4   45     3    3    3    4    5   12   20   26   28   34   37   43   49   56   60   68   71   80   83   89 
LCS_GDT     R      19     R      19      3    6   45     1    3    5    6   13   23   27   27   33   37   44   50   56   62   67   70   73   80   83   89 
LCS_GDT     C      20     C      20      5   28   46     4    5    7   16   24   26   27   31   33   39   44   52   56   62   67   70   73   80   83   89 
LCS_GDT     G      21     G      21      5   28   46     4    5   24   27   30   33   37   39   40   46   50   53   58   62   67   70   73   80   83   89 
LCS_GDT     V      22     V      22     23   28   46     4    5    5   27   30   33   37   39   40   46   50   53   58   62   66   70   73   79   83   86 
LCS_GDT     E      23     E      23     23   28   46     4    5   14   23   24   28   37   39   40   46   50   53   58   62   65   70   73   76   83   85 
LCS_GDT     A      24     A      24     24   28   46    19   21   24   27   30   33   37   39   40   46   50   53   58   62   67   70   73   80   83   89 
LCS_GDT     D      25     D      25     24   28   46    19   21   24   27   30   33   37   39   40   46   50   53   58   62   67   70   73   80   83   89 
LCS_GDT     K      26     K      26     24   28   46    19   21   24   27   30   33   37   39   40   46   50   53   58   62   67   70   73   80   83   89 
LCS_GDT     E      27     E      27     24   28   46    19   21   24   27   30   33   37   39   40   46   50   53   58   62   67   70   73   80   83   89 
LCS_GDT     L      28     L      28     24   28   46    19   21   24   27   30   33   37   39   40   46   50   53   58   62   67   70   73   80   83   89 
LCS_GDT     S      29     S      29     24   28   46    19   21   24   27   30   33   37   39   40   46   50   53   58   62   67   70   73   80   83   89 
LCS_GDT     C      30     C      30     24   28   46    19   21   24   27   30   33   37   39   40   46   50   53   58   62   67   70   73   80   83   89 
LCS_GDT     R      31     R      31     24   28   46    19   21   24   27   30   33   37   39   40   46   50   53   58   62   67   70   73   80   83   89 
LCS_GDT     Q      32     Q      32     24   28   46    19   21   24   27   30   33   37   39   40   46   50   53   58   62   67   70   73   80   83   89 
LCS_GDT     Q      33     Q      33     24   28   46    19   21   24   27   30   33   37   39   40   46   50   53   58   62   67   70   73   80   83   89 
LCS_GDT     A      34     A      34     24   28   46    19   21   24   27   30   33   37   39   40   46   50   53   58   62   67   70   73   80   83   89 
LCS_GDT     A      35     A      35     24   28   52    19   21   24   27   30   33   37   39   40   46   50   53   58   62   67   70   73   80   83   89 
LCS_GDT     N      36     N      36     24   28   52    19   21   24   27   30   33   37   39   40   46   50   53   58   62   67   70   73   80   83   89 
LCS_GDT     L      37     L      37     24   28   53    19   21   24   27   30   33   37   39   40   46   50   53   58   62   67   70   73   80   83   89 
LCS_GDT     I      38     I      38     24   28   53    19   21   24   27   30   33   37   39   40   46   50   53   58   62   67   70   73   80   83   89 
LCS_GDT     Q      39     Q      39     24   28   53    19   21   24   27   30   33   37   39   40   46   50   53   58   62   67   70   73   80   83   89 
LCS_GDT     E      40     E      40     24   28   53    19   21   24   27   30   33   37   39   40   46   50   53   58   62   67   70   73   80   83   89 
LCS_GDT     M      41     M      41     24   28   53    19   21   24   27   30   33   37   39   40   46   50   53   58   62   67   70   73   80   83   89 
LCS_GDT     G      42     G      42     24   28   53    16   21   24   27   30   33   37   39   40   46   50   53   58   62   67   70   73   80   83   89 
LCS_GDT     Q      43     Q      43     24   28   53    19   21   24   27   30   33   37   39   40   46   50   53   58   62   67   70   73   80   83   89 
LCS_GDT     R      44     R      44     24   28   53    19   21   24   27   30   33   37   39   40   46   50   53   58   62   67   70   73   80   83   89 
LCS_GDT     L      45     L      45     24   28   53     4   17   24   27   30   33   37   39   40   46   50   53   58   62   67   70   73   80   83   89 
LCS_GDT     N      46     N      46     24   28   53     4   13   20   27   30   33   37   39   40   46   50   53   58   62   67   70   73   80   83   89 
LCS_GDT     V      47     V      47     24   28   53     4   13   22   27   30   33   37   39   40   46   50   53   58   62   67   70   73   80   83   89 
LCS_GDT     S      48     S      48      3   28   53     3    4    9   16   20   25   31   34   38   46   50   53   58   62   65   69   72   77   81   89 
LCS_GDT     Q      49     Q      49     20   22   53    15   18   18   20   25   28   33   34   37   41   43   47   52   55   60   66   72   73   76   81 
LCS_GDT     L      50     L      50     20   22   53    15   18   18   20   25   28   33   34   37   41   43   47   52   55   60   66   71   73   76   81 
LCS_GDT     T      51     T      51     20   22   53    15   18   18   20   25   28   33   34   37   41   43   48   52   60   65   68   72   73   81   86 
LCS_GDT     I      52     I      52     20   22   53    15   18   18   20   25   28   33   34   37   41   46   53   58   62   65   69   72   80   83   89 
LCS_GDT     N      53     N      53     20   22   53    15   18   18   20   25   28   33   34   37   41   43   48   58   62   65   69   72   77   83   89 
LCS_GDT     T      54     T      54     20   22   53    15   18   18   20   25   28   33   34   37   41   46   53   58   62   65   69   72   80   83   89 
LCS_GDT     A      55     A      55     20   22   53    15   18   18   20   25   28   33   36   40   46   50   53   58   62   67   70   73   80   83   89 
LCS_GDT     I      56     I      56     20   22   53    15   18   18   20   25   28   33   34   38   46   50   53   58   62   67   70   73   80   83   89 
LCS_GDT     V      57     V      57     20   22   53    15   18   18   20   25   28   33   34   37   44   50   53   58   62   65   69   73   80   83   89 
LCS_GDT     Y      58     Y      58     20   22   53    15   18   18   20   25   28   33   37   40   46   50   53   58   62   67   70   73   80   83   89 
LCS_GDT     M      59     M      59     20   22   53    15   18   18   20   25   28   37   39   40   46   50   53   58   62   67   70   73   80   83   89 
LCS_GDT     H      60     H      60     20   22   53    15   18   18   20   25   28   33   34   37   43   50   53   58   62   65   69   73   77   83   89 
LCS_GDT     R      61     R      61     20   22   53    15   18   18   20   25   28   33   34   38   46   50   53   58   62   66   70   73   78   83   89 
LCS_GDT     F      62     F      62     20   22   53    15   18   18   22   25   29   37   39   40   46   50   53   58   62   67   70   73   80   83   89 
LCS_GDT     Y      63     Y      63     20   22   53    15   18   18   20   25   28   33   34   37   41   45   53   58   62   65   69   72   74   80   83 
LCS_GDT     M      64     M      64     20   22   53     6   18   18   20   25   28   33   34   37   41   44   52   58   62   65   69   72   74   80   83 
LCS_GDT     H      65     H      65     20   22   53     3   18   18   20   25   28   33   34   37   41   45   53   58   62   65   69   72   74   80   83 
LCS_GDT     H      66     H      66     20   22   53    12   18   18   20   25   28   33   34   37   41   43   48   56   60   65   69   72   73   80   82 
LCS_GDT     S      67     S      67     20   22   53     3    6   17   20   25   28   33   34   37   41   43   48   52   56   62   65   67   71   75   78 
LCS_GDT     F      68     F      68     20   22   53     3    4   15   20   22   26   31   34   37   39   43   48   52   56   62   65   67   71   75   78 
LCS_GDT     T      69     T      69      4   22   53     3    3    8   18   25   28   33   34   37   41   43   45   48   51   55   59   61   65   67   71 
LCS_GDT     K      70     K      70      4   20   53     3    3    5    5   14   21   26   31   37   41   43   45   48   51   55   59   61   65   67   71 
LCS_GDT     F      71     F      71      4   20   53     3    9   13   16   22   27   33   33   37   41   43   45   48   51   55   59   61   65   67   71 
LCS_GDT     N      72     N      72     17   20   53     3    3    4   16   21   26   33   33   37   41   43   45   48   51   55   59   61   65   67   71 
LCS_GDT     K      73     K      73     17   20   53     3   15   16   17   25   28   33   34   37   41   43   45   48   51   55   59   61   65   68   71 
LCS_GDT     N      74     N      74     17   20   53    11   15   16   16   18   21   27   33   36   41   43   45   48   51   55   59   61   65   67   71 
LCS_GDT     I      75     I      75     17   20   53    11   15   16   16   18   21   27   33   35   40   43   45   48   51   55   59   61   65   67   71 
LCS_GDT     I      76     I      76     17   20   53    11   15   16   17   25   28   33   34   37   41   43   45   52   53   60   65   70   72   80   83 
LCS_GDT     S      77     S      77     17   20   53    11   15   16   16   18   28   33   34   37   41   43   49   54   61   67   70   73   80   83   89 
LCS_GDT     S      78     S      78     17   20   53    11   15   16   16   18   21   27   33   37   42   47   52   56   62   67   70   73   80   83   89 
LCS_GDT     T      79     T      79     17   20   53    11   15   16   18   25   28   33   34   37   41   43   48   54   60   65   70   73   80   83   89 
LCS_GDT     A      80     A      80     17   20   53    11   15   16   16   22   28   33   34   37   41   47   51   58   62   67   70   73   80   83   89 
LCS_GDT     L      81     L      81     17   20   53    11   15   16   16   18   22   28   32   37   41   44   52   58   62   67   70   73   80   83   89 
LCS_GDT     F      82     F      82     17   20   53    11   15   16   16   22   27   33   34   37   41   43   48   54   60   65   69   72   80   83   89 
LCS_GDT     L      83     L      83     17   20   53    11   15   16   16   21   28   33   34   37   41   43   45   48   51   55   63   68   71   76   86 
LCS_GDT     A      84     A      84     17   20   53    11   15   16   16   18   21   26   29   35   41   42   45   48   51   55   63   68   71   80   86 
LCS_GDT     A      85     A      85     17   20   53    11   15   16   16   18   21   27   32   36   41   42   45   48   51   55   63   68   71   76   81 
LCS_GDT     K      86     K      86     17   20   53     8   15   16   16   18   23   33   33   37   41   43   45   48   51   55   59   61   65   69   74 
LCS_GDT     V      87     V      87     17   20   53    11   15   16   16   18   21   25   29   33   37   42   45   48   50   54   57   61   65   67   71 
LCS_GDT     E      88     E      88     17   20   53     6   15   16   16   18   21   24   28   31   34   40   42   46   49   55   59   61   65   67   71 
LCS_GDT     E      89     E      89     17   20   53     3    3    5   16   17   19   23   27   30   32   37   42   44   49   55   59   61   65   67   71 
LCS_GDT     Q      90     Q      90      4    5   50     3    3    4    4    5    7   11   17   19   27   34   39   44   49   52   57   60   62   65   69 
LCS_GDT     A      91     A      91      3    4   44     3    3    4    7    8   13   17   18   20   28   34   38   44   49   55   57   61   65   67   69 
LCS_GDT     R      92     R      92      3   13   44     3    3    4    7   11   14   17   18   20   31   34   39   44   49   55   59   61   65   67   71 
LCS_GDT     K      93     K      93     12   13   43    12   13   13   13   13   23   24   27   29   36   40   45   48   53   56   63   68   71   76   81 
LCS_GDT     L      94     L      94     12   13   37    12   13   13   13   21   23   24   27   32   36   41   48   53   59   64   68   72   73   77   84 
LCS_GDT     E      95     E      95     12   13   33    12   13   13   19   21   23   24   27   32   36   41   48   52   57   62   67   72   73   76   81 
LCS_GDT     H      96     H      96     12   13   33    12   13   13   13   13   23   24   27   32   36   41   45   50   57   62   65   70   72   76   81 
LCS_GDT     V      97     V      97     12   13   33    12   13   13   13   13   14   18   22   27   35   41   51   58   62   65   69   72   73   81   86 
LCS_GDT     I      98     I      98     12   13   33    12   13   13   13   13   15   22   36   40   45   50   53   58   62   65   69   72   80   83   89 
LCS_GDT     K      99     K      99     12   13   33    12   13   13   13   13   15   19   26   36   43   50   53   58   62   65   69   72   73   78   84 
LCS_GDT     V     100     V     100     12   13   33    12   13   13   13   13   14   17   22   26   39   45   53   58   62   65   69   72   73   81   86 
LCS_GDT     A     101     A     101     12   13   39    12   13   13   13   13   14   17   25   40   46   50   53   58   62   67   70   73   80   83   89 
LCS_GDT     H     102     H     102     12   13   39    12   13   20   23   28   33   37   39   40   46   50   53   58   62   67   70   73   80   83   89 
LCS_GDT     A     103     A     103     12   13   39    12   13   13   13   13   14   18   36   40   46   50   53   58   62   65   70   73   80   83   89 
LCS_GDT     C     104     C     104     12   13   39    12   13   13   13   13   14   17   22   26   34   38   44   53   60   67   70   73   80   83   89 
LCS_GDT     L     105     L     105      4   13   39     3    3    4    7   11   14   15   17   25   31   36   43   49   56   60   66   71   80   83   89 
LCS_GDT     H     106     H     106      4    6   39     3    3    5    6    9   15   20   26   28   34   37   43   53   59   67   70   73   80   83   89 
LCS_GDT     P     107     P     107      3    6   39     3    3    5    6    9   15   20   26   28   34   37   44   53   59   67   70   73   80   83   89 
LCS_GDT     L     108     L     108      4    6   39     3    3    5    6    8   13   20   26   28   34   37   43   49   56   60   66   71   80   83   89 
LCS_GDT     E     109     E     109      4    6   39     3    3    5    5    6    8   12   16   23   31   36   43   49   56   60   63   70   79   83   89 
LCS_GDT     P     110     P     110      4    5   39     3    3    4    6    9   15   20   26   28   34   37   43   49   59   67   69   73   80   83   89 
LCS_GDT     L     111     L     111      4    5   39     3    3    5    5    7    8   13   18   23   31   36   43   49   56   60   66   71   80   83   89 
LCS_GDT     L     112     L     112      4    5   39     3    3    4    4    7    8   10   11   15   26   29   39   48   56   60   63   68   79   83   89 
LCS_GDT     D     113     D     113      4    5   39     4    4    5    5    5   10   14   26   28   36   44   50   56   62   67   70   73   80   83   89 
LCS_GDT     T     114     T     114      4    5   39     4    4    4    5    5    5   30   35   38   43   47   52   56   62   67   70   73   80   83   89 
LCS_GDT     K     115     K     115      4   25   39     4    4    4    5    5    5   25   27   33   37   45   50   56   62   67   70   73   80   83   89 
LCS_GDT     C     116     C     116     23   25   39    12   20   23   23   24   26   27   27   29   34   37   43   56   62   67   70   73   80   83   89 
LCS_GDT     D     117     D     117     23   25   39    14   20   23   23   24   26   27   27   29   33   41   46   56   62   67   70   73   80   83   89 
LCS_GDT     A     118     A     118     23   25   39    14   20   23   23   24   26   27   27   29   33   37   41   49   56   60   63   70   75   83   86 
LCS_GDT     Y     119     Y     119     23   25   39    14   20   23   23   24   26   27   27   31   34   37   43   56   62   67   70   73   80   83   89 
LCS_GDT     L     120     L     120     23   25   39    14   20   23   23   24   27   31   35   38   43   47   52   56   62   67   70   73   80   83   89 
LCS_GDT     Q     121     Q     121     23   25   39    14   20   23   23   24   26   27   27   29   37   45   50   56   62   67   70   73   80   83   89 
LCS_GDT     Q     122     Q     122     23   25   39    14   20   23   23   24   26   27   27   31   34   40   50   56   62   67   70   73   80   83   89 
LCS_GDT     T     123     T     123     23   25   39    14   20   23   23   25   28   31   35   38   43   47   52   56   62   67   70   73   80   83   89 
LCS_GDT     R     124     R     124     23   25   39    14   20   23   23   27   31   37   39   40   43   47   52   56   62   67   70   73   80   83   89 
LCS_GDT     E     125     E     125     23   25   39    14   20   23   23   24   26   27   35   39   43   47   52   56   62   67   70   73   80   83   89 
LCS_GDT     L     126     L     126     23   25   39    14   20   23   23   25   28   31   38   40   43   47   52   56   62   67   70   73   80   83   89 
LCS_GDT     V     127     V     127     23   25   39    14   20   23   25   29   33   37   39   40   46   50   53   58   62   67   70   73   80   83   89 
LCS_GDT     I     128     I     128     23   25   39    14   20   24   25   30   33   37   39   40   46   50   53   58   62   67   70   73   80   83   89 
LCS_GDT     L     129     L     129     23   25   39    14   20   23   24   28   32   37   39   40   44   49   53   58   62   67   70   73   80   83   89 
LCS_GDT     E     130     E     130     23   25   39    14   20   23   23   24   32   37   39   40   46   50   53   58   62   67   70   73   80   83   89 
LCS_GDT     T     131     T     131     23   25   39    11   20   23   23   30   33   35   39   40   46   50   53   58   62   67   70   73   80   83   89 
LCS_GDT     I     132     I     132     23   25   39    14   20   24   27   30   33   37   39   40   46   50   53   58   62   67   70   73   80   83   89 
LCS_GDT     M     133     M     133     23   25   39    11   20   23   23   27   33   37   39   40   46   50   53   58   62   67   70   73   80   83   89 
LCS_GDT     L     134     L     134     23   25   39    11   20   23   23   24   26   27   30   39   46   50   53   58   62   67   70   73   80   83   89 
LCS_GDT     Q     135     Q     135     23   25   39    11   20   23   23   24   26   29   34   38   46   50   53   58   62   67   70   73   80   83   89 
LCS_GDT     T     136     T     136     23   25   39    11   20   23   23   30   33   35   39   40   46   50   53   58   62   67   70   73   80   83   89 
LCS_GDT     L     137     L     137     23   25   39     9   17   23   23   24   26   27   31   36   39   46   53   56   62   67   70   73   80   83   89 
LCS_GDT     G     138     G     138     23   25   39     3   19   23   23   24   26   27   33   37   41   44   48   56   62   67   70   73   80   83   89 
LCS_GDT     F     139     F     139      4   25   39     3    4    5    5   13   20   28   32   37   41   43   45   48   52   60   66   71   80   83   89 
LCS_GDT     E     140     E     140      4    4   37     3    3    4    6    7   21   24   28   30   33   37   41   48   52   59   66   71   79   83   89 
LCS_GDT     I     141     I     141      4    4   37     3    5    5    7    7    8   13   22   26   31   34   39   46   52   59   63   70   79   83   89 
LCS_GDT     T     142     T     142      4    4   34     3    5    5    7    7    7   11   22   26   31   34   41   44   51   59   63   70   79   83   89 
LCS_GDT     I     143     I     143      3    4   34     3    5    5    7    7    9   14   22   27   33   36   41   48   51   56   66   71   80   83   89 
LCS_AVERAGE  LCS_A:  17.98  (  10.63   13.03   30.29 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     19     21     24     27     30     33     37     39     40     46     50     53     58     62     67     70     73     80     83     89 
GDT PERCENT_CA  13.29  14.69  16.78  18.88  20.98  23.08  25.87  27.27  27.97  32.17  34.97  37.06  40.56  43.36  46.85  48.95  51.05  55.94  58.04  62.24
GDT RMS_LOCAL    0.20   0.27   0.63   1.02   1.22   1.53   1.97   2.12   2.23   3.13   3.52   3.78   4.14   4.45   4.98   5.06   5.28   6.01   6.06   6.62
GDT RMS_ALL_CA  16.33  16.44  16.08  16.00  15.96  15.98  16.23  16.13  16.11  15.94  16.06  16.02  16.20  16.25  15.51  15.69  15.66  15.19  15.38  15.05

#      Molecule1      Molecule2       DISTANCE
LGA    A       1      A       1         49.614
LGA    S       2      S       2         48.016
LGA    S       3      S       3         46.496
LGA    R       4      R       4         42.069
LGA    W       5      W       5         36.340
LGA    F       6      F       6         36.414
LGA    F       7      F       7         32.684
LGA    T       8      T       8         33.085
LGA    R       9      R       9         33.495
LGA    E      10      E      10         35.191
LGA    Q      11      Q      11         32.676
LGA    L      12      L      12         25.980
LGA    E      13      E      13         25.776
LGA    N      14      N      14         28.142
LGA    T      15      T      15         23.147
LGA    P      16      P      16         20.276
LGA    S      17      S      17         18.013
LGA    R      18      R      18         16.004
LGA    R      19      R      19         12.595
LGA    C      20      C      20          8.070
LGA    G      21      G      21          2.053
LGA    V      22      V      22          2.767
LGA    E      23      E      23          3.497
LGA    A      24      A      24          0.617
LGA    D      25      D      25          0.854
LGA    K      26      K      26          0.691
LGA    E      27      E      27          0.656
LGA    L      28      L      28          0.941
LGA    S      29      S      29          0.925
LGA    C      30      C      30          0.878
LGA    R      31      R      31          0.938
LGA    Q      32      Q      32          0.945
LGA    Q      33      Q      33          0.651
LGA    A      34      A      34          0.634
LGA    A      35      A      35          0.990
LGA    N      36      N      36          0.809
LGA    L      37      L      37          0.484
LGA    I      38      I      38          0.992
LGA    Q      39      Q      39          1.074
LGA    E      40      E      40          0.523
LGA    M      41      M      41          0.884
LGA    G      42      G      42          1.753
LGA    Q      43      Q      43          1.603
LGA    R      44      R      44          0.881
LGA    L      45      L      45          1.899
LGA    N      46      N      46          2.209
LGA    V      47      V      47          2.448
LGA    S      48      S      48          9.276
LGA    Q      49      Q      49         14.530
LGA    L      50      L      50         15.103
LGA    T      51      T      51         12.288
LGA    I      52      I      52          9.714
LGA    N      53      N      53         11.304
LGA    T      54      T      54         10.158
LGA    A      55      A      55          6.513
LGA    I      56      I      56          6.986
LGA    V      57      V      57          8.268
LGA    Y      58      Y      58          4.824
LGA    M      59      M      59          3.923
LGA    H      60      H      60          7.343
LGA    R      61      R      61          5.846
LGA    F      62      F      62          3.797
LGA    Y      63      Y      63          7.808
LGA    M      64      M      64          9.221
LGA    H      65      H      65          8.101
LGA    H      66      H      66          9.936
LGA    S      67      S      67         15.107
LGA    F      68      F      68         14.597
LGA    T      69      T      69         21.741
LGA    K      70      K      70         24.087
LGA    F      71      F      71         19.336
LGA    N      72      N      72         20.842
LGA    K      73      K      73         14.976
LGA    N      74      N      74         15.015
LGA    I      75      I      75         13.047
LGA    I      76      I      76          9.619
LGA    S      77      S      77          7.100
LGA    S      78      S      78          6.068
LGA    T      79      T      79          6.849
LGA    A      80      A      80          5.533
LGA    L      81      L      81          6.832
LGA    F      82      F      82          7.921
LGA    L      83      L      83         12.357
LGA    A      84      A      84         13.642
LGA    A      85      A      85         15.335
LGA    K      86      K      86         18.854
LGA    V      87      V      87         21.742
LGA    E      88      E      88         23.641
LGA    E      89      E      89         28.617
LGA    Q      90      Q      90         30.250
LGA    A      91      A      91         28.645
LGA    R      92      R      92         24.493
LGA    K      93      K      93         18.473
LGA    L      94      L      94         13.223
LGA    E      95      E      95         14.639
LGA    H      96      H      96         15.215
LGA    V      97      V      97         10.743
LGA    I      98      I      98          6.756
LGA    K      99      K      99          8.685
LGA    V     100      V     100          9.512
LGA    A     101      A     101          5.486
LGA    H     102      H     102          2.592
LGA    A     103      A     103          5.823
LGA    C     104      C     104          9.218
LGA    L     105      L     105         13.591
LGA    H     106      H     106         12.405
LGA    P     107      P     107         11.645
LGA    L     108      L     108         16.079
LGA    E     109      E     109         18.706
LGA    P     110      P     110         16.071
LGA    L     111      L     111         16.099
LGA    L     112      L     112         16.803
LGA    D     113      D     113         11.978
LGA    T     114      T     114          7.609
LGA    K     115      K     115         11.690
LGA    C     116      C     116         13.505
LGA    D     117      D     117         11.933
LGA    A     118      A     118         14.104
LGA    Y     119      Y     119         12.275
LGA    L     120      L     120          7.702
LGA    Q     121      Q     121          8.888
LGA    Q     122      Q     122          9.863
LGA    T     123      T     123          6.492
LGA    R     124      R     124          3.625
LGA    E     125      E     125          6.240
LGA    L     126      L     126          5.429
LGA    V     127      V     127          1.657
LGA    I     128      I     128          2.561
LGA    L     129      L     129          2.815
LGA    E     130      E     130          3.281
LGA    T     131      T     131          3.946
LGA    I     132      I     132          2.414
LGA    M     133      M     133          2.779
LGA    L     134      L     134          6.916
LGA    Q     135      Q     135          7.032
LGA    T     136      T     136          3.594
LGA    L     137      L     137          7.625
LGA    G     138      G     138         10.510
LGA    F     139      F     139         15.648
LGA    E     140      E     140         16.682
LGA    I     141      I     141         15.962
LGA    T     142      T     142         17.139
LGA    I     143      I     143         14.312

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  143  143    4.0     39    2.12    27.448    23.831     1.760

LGA_LOCAL      RMSD =  2.116  Number of atoms =   39  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 16.130  Number of atoms =  143 
Std_ALL_ATOMS  RMSD = 14.430  (standard rmsd on all 143 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.573984 * X  +   0.014277 * Y  +  -0.818742 * Z  + -20.320147
  Y_new =  -0.309627 * X  +  -0.921833 * Y  +  -0.233140 * Z  +  30.824280
  Z_new =  -0.758072 * X  +   0.387324 * Y  +  -0.524697 * Z  +  48.397533 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.505696   -0.635897  [ DEG:   143.5658    -36.4342 ]
  Theta =   0.860353    2.281240  [ DEG:    49.2946    130.7054 ]
  Phi   =  -0.494696    2.646896  [ DEG:   -28.3440    151.6560 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0338TS393_2-D1                               
REMARK     2: T0338_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0338TS393_2-D1.T0338_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  143  143   4.0   39   2.12  23.831    14.43
REMARK  ---------------------------------------------------------- 
MOLECULE T0338TS393_2-D1
PFRMAT TS
TARGET T0338
MODEL 2
PARENT N/A
ATOM      1  CA  ALA     1      -1.367  57.770  53.030  1.00 25.00           C
ATOM      2  CA  SER     2      -2.154  55.034  55.536  1.00 25.00           C
ATOM      3  CA  SER     3      -4.503  52.575  57.159  1.00 25.00           C
ATOM      4  CA  ARG     4      -2.434  50.376  54.874  1.00 25.00           C
ATOM      5  CA  TRP     5      -4.866  47.616  54.029  1.00 25.00           C
ATOM      6  CA  PHE     6      -3.872  44.947  56.603  1.00 25.00           C
ATOM      7  CA  PHE     7      -2.978  41.288  55.761  1.00 25.00           C
ATOM      8  CA  THR     8      -5.293  39.818  58.453  1.00 25.00           C
ATOM      9  CA  ARG     9      -2.132  40.365  60.553  1.00 25.00           C
ATOM     10  CA  GLU    10      -0.986  41.116  64.129  1.00 25.00           C
ATOM     11  CA  GLN    11      -4.573  40.678  65.398  1.00 25.00           C
ATOM     12  CA  LEU    12      -4.842  37.332  63.553  1.00 25.00           C
ATOM     13  CA  GLU    13      -1.530  36.186  65.098  1.00 25.00           C
ATOM     14  CA  ASN    14       2.019  37.265  65.834  1.00 25.00           C
ATOM     15  CA  THR    15       3.031  35.549  62.587  1.00 25.00           C
ATOM     16  CA  PRO    16       5.769  33.014  61.733  1.00 25.00           C
ATOM     17  CA  SER    17       8.879  33.645  59.642  1.00 25.00           C
ATOM     18  CA  ARG    18       8.347  30.876  57.035  1.00 25.00           C
ATOM     19  CA  ARG    19       7.108  27.339  56.307  1.00 25.00           C
ATOM     20  CA  CYS    20       5.746  24.426  58.334  1.00 25.00           C
ATOM     21  CA  GLY    21       4.749  21.232  56.625  1.00 25.00           C
ATOM     22  CA  VAL    22       3.272  18.844  59.137  1.00 25.00           C
ATOM     23  CA  GLU    23      -0.073  17.221  58.327  1.00 25.00           C
ATOM     24  CA  ALA    24      -0.639  16.902  62.076  1.00 25.00           C
ATOM     25  CA  ASP    25      -0.623  18.788  65.410  1.00 25.00           C
ATOM     26  CA  LYS    26      -0.043  22.093  63.565  1.00 25.00           C
ATOM     27  CA  GLU    27      -2.949  21.310  61.197  1.00 25.00           C
ATOM     28  CA  LEU    28      -5.208  20.526  64.188  1.00 25.00           C
ATOM     29  CA  SER    29      -4.206  23.832  65.842  1.00 25.00           C
ATOM     30  CA  CYS    30      -4.983  25.717  62.601  1.00 25.00           C
ATOM     31  CA  ARG    31      -8.404  24.007  62.398  1.00 25.00           C
ATOM     32  CA  GLN    32      -9.128  24.966  66.034  1.00 25.00           C
ATOM     33  CA  GLN    33      -8.144  28.593  65.299  1.00 25.00           C
ATOM     34  CA  ALA    34     -10.451  28.625  62.243  1.00 25.00           C
ATOM     35  CA  ALA    35     -13.322  27.237  64.364  1.00 25.00           C
ATOM     36  CA  ASN    36     -12.707  29.937  67.009  1.00 25.00           C
ATOM     37  CA  LEU    37     -12.738  32.638  64.293  1.00 25.00           C
ATOM     38  CA  ILE    38     -16.031  31.250  62.917  1.00 25.00           C
ATOM     39  CA  GLN    39     -17.544  31.282  66.435  1.00 25.00           C
ATOM     40  CA  GLU    40     -16.414  34.909  66.914  1.00 25.00           C
ATOM     41  CA  MET    41     -17.982  35.868  63.555  1.00 25.00           C
ATOM     42  CA  GLY    42     -21.255  34.157  64.566  1.00 25.00           C
ATOM     43  CA  GLN    43     -21.239  36.043  67.900  1.00 25.00           C
ATOM     44  CA  ARG    44     -20.660  39.349  66.055  1.00 25.00           C
ATOM     45  CA  LEU    45     -21.156  39.744  62.353  1.00 25.00           C
ATOM     46  CA  ASN    46     -24.903  39.732  63.217  1.00 25.00           C
ATOM     47  CA  VAL    47     -25.781  36.803  60.910  1.00 25.00           C
ATOM     48  CA  SER    48     -26.550  38.357  57.476  1.00 25.00           C
ATOM     49  CA  GLN    49     -25.086  38.062  54.007  1.00 25.00           C
ATOM     50  CA  LEU    50     -25.567  36.173  50.710  1.00 25.00           C
ATOM     51  CA  THR    51     -21.770  35.923  50.272  1.00 25.00           C
ATOM     52  CA  ILE    52     -21.422  34.586  53.844  1.00 25.00           C
ATOM     53  CA  ASN    53     -24.151  31.988  53.165  1.00 25.00           C
ATOM     54  CA  THR    54     -22.365  30.915  49.951  1.00 25.00           C
ATOM     55  CA  ALA    55     -19.068  30.574  51.870  1.00 25.00           C
ATOM     56  CA  ILE    56     -20.812  28.453  54.539  1.00 25.00           C
ATOM     57  CA  VAL    57     -22.316  26.218  51.817  1.00 25.00           C
ATOM     58  CA  TYR    58     -18.863  25.802  50.216  1.00 25.00           C
ATOM     59  CA  MET    59     -17.371  24.869  53.617  1.00 25.00           C
ATOM     60  CA  HIS    60     -20.156  22.296  54.161  1.00 25.00           C
ATOM     61  CA  ARG    61     -19.493  20.810  50.693  1.00 25.00           C
ATOM     62  CA  PHE    62     -15.751  20.586  51.477  1.00 25.00           C
ATOM     63  CA  TYR    63     -16.526  18.837  54.794  1.00 25.00           C
ATOM     64  CA  MET    64     -18.812  16.356  52.981  1.00 25.00           C
ATOM     65  CA  HIS    65     -16.056  15.654  50.417  1.00 25.00           C
ATOM     66  CA  HIS    66     -13.088  15.589  52.883  1.00 25.00           C
ATOM     67  CA  SER    67     -14.854  13.714  55.725  1.00 25.00           C
ATOM     68  CA  PHE    68     -14.023  16.162  58.438  1.00 25.00           C
ATOM     69  CA  THR    69     -15.878  13.690  60.728  1.00 25.00           C
ATOM     70  CA  LYS    70     -18.525  15.739  62.535  1.00 25.00           C
ATOM     71  CA  PHE    71     -16.468  18.898  63.042  1.00 25.00           C
ATOM     72  CA  ASN    72     -19.277  20.375  65.034  1.00 25.00           C
ATOM     73  CA  LYS    73     -19.730  23.127  62.474  1.00 25.00           C
ATOM     74  CA  ASN    74     -21.323  25.981  60.479  1.00 25.00           C
ATOM     75  CA  ILE    75     -18.671  28.412  61.792  1.00 25.00           C
ATOM     76  CA  ILE    76     -15.899  25.965  60.796  1.00 25.00           C
ATOM     77  CA  SER    77     -17.414  25.634  57.295  1.00 25.00           C
ATOM     78  CA  SER    78     -17.561  29.448  56.972  1.00 25.00           C
ATOM     79  CA  THR    79     -13.895  29.704  58.050  1.00 25.00           C
ATOM     80  CA  ALA    80     -12.922  27.052  55.465  1.00 25.00           C
ATOM     81  CA  LEU    81     -14.826  28.968  52.748  1.00 25.00           C
ATOM     82  CA  PHE    82     -13.038  32.205  53.744  1.00 25.00           C
ATOM     83  CA  LEU    83      -9.656  30.417  53.579  1.00 25.00           C
ATOM     84  CA  ALA    84     -10.519  29.051  50.107  1.00 25.00           C
ATOM     85  CA  ALA    85     -11.502  32.564  48.942  1.00 25.00           C
ATOM     86  CA  LYS    86      -8.198  33.960  50.285  1.00 25.00           C
ATOM     87  CA  VAL    87      -6.262  31.213  48.448  1.00 25.00           C
ATOM     88  CA  GLU    88      -8.139  32.022  45.209  1.00 25.00           C
ATOM     89  CA  GLU    89      -5.363  32.973  42.747  1.00 25.00           C
ATOM     90  CA  GLN    90      -2.404  35.153  43.795  1.00 25.00           C
ATOM     91  CA  ALA    91      -2.180  37.691  40.896  1.00 25.00           C
ATOM     92  CA  ARG    92      -3.382  40.065  43.626  1.00 25.00           C
ATOM     93  CA  LYS    93      -7.024  41.013  44.191  1.00 25.00           C
ATOM     94  CA  LEU    94      -7.980  38.152  46.474  1.00 25.00           C
ATOM     95  CA  GLU    95      -5.641  39.240  49.305  1.00 25.00           C
ATOM     96  CA  HIS    96      -7.009  42.811  49.097  1.00 25.00           C
ATOM     97  CA  VAL    97     -10.594  41.472  49.247  1.00 25.00           C
ATOM     98  CA  ILE    98      -9.702  39.355  52.311  1.00 25.00           C
ATOM     99  CA  LYS    99      -8.148  42.418  54.005  1.00 25.00           C
ATOM    100  CA  VAL   100     -11.301  44.461  53.261  1.00 25.00           C
ATOM    101  CA  ALA   101     -13.481  41.677  54.733  1.00 25.00           C
ATOM    102  CA  HIS   102     -11.292  41.590  57.875  1.00 25.00           C
ATOM    103  CA  ALA   103     -11.594  45.393  58.218  1.00 25.00           C
ATOM    104  CA  CYS   104     -15.399  45.147  57.866  1.00 25.00           C
ATOM    105  CA  LEU   105     -16.757  48.677  57.338  1.00 25.00           C
ATOM    106  CA  HIS   106     -15.124  51.794  58.746  1.00 25.00           C
ATOM    107  CA  PRO   107     -16.355  53.289  62.039  1.00 25.00           C
ATOM    108  CA  LEU   108     -18.496  56.191  60.685  1.00 25.00           C
ATOM    109  CA  GLU   109     -22.084  57.412  60.080  1.00 25.00           C
ATOM    110  CA  PRO   110     -22.573  55.625  56.746  1.00 25.00           C
ATOM    111  CA  LEU   111     -24.993  56.446  53.876  1.00 25.00           C
ATOM    112  CA  LEU   112     -25.927  55.430  50.304  1.00 25.00           C
ATOM    113  CA  ASP   113     -22.230  55.455  49.305  1.00 25.00           C
ATOM    114  CA  THR   114     -21.371  53.277  52.336  1.00 25.00           C
ATOM    115  CA  LYS   115     -24.157  50.824  51.395  1.00 25.00           C
ATOM    116  CA  CYS   116     -22.839  50.668  47.803  1.00 25.00           C
ATOM    117  CA  ASP   117     -19.301  49.991  49.104  1.00 25.00           C
ATOM    118  CA  ALA   118     -20.638  47.197  51.356  1.00 25.00           C
ATOM    119  CA  TYR   119     -22.502  45.659  48.385  1.00 25.00           C
ATOM    120  CA  LEU   120     -19.308  45.801  46.276  1.00 25.00           C
ATOM    121  CA  GLN   121     -17.344  44.104  49.092  1.00 25.00           C
ATOM    122  CA  GLN   122     -20.011  41.366  49.335  1.00 25.00           C
ATOM    123  CA  THR   123     -19.839  40.829  45.546  1.00 25.00           C
ATOM    124  CA  ARG   124     -16.023  40.568  45.731  1.00 25.00           C
ATOM    125  CA  GLU   125     -16.311  38.010  48.567  1.00 25.00           C
ATOM    126  CA  LEU   126     -18.818  35.974  46.510  1.00 25.00           C
ATOM    127  CA  VAL   127     -16.450  36.053  43.500  1.00 25.00           C
ATOM    128  CA  ILE   128     -13.556  34.877  45.716  1.00 25.00           C
ATOM    129  CA  LEU   129     -15.719  32.021  47.067  1.00 25.00           C
ATOM    130  CA  GLU   130     -16.653  31.004  43.495  1.00 25.00           C
ATOM    131  CA  THR   131     -12.956  31.028  42.495  1.00 25.00           C
ATOM    132  CA  ILE   132     -12.097  28.852  45.527  1.00 25.00           C
ATOM    133  CA  MET   133     -14.883  26.399  44.586  1.00 25.00           C
ATOM    134  CA  LEU   134     -13.564  26.242  40.993  1.00 25.00           C
ATOM    135  CA  GLN   135     -10.026  25.564  42.294  1.00 25.00           C
ATOM    136  CA  THR   136     -11.365  22.770  44.547  1.00 25.00           C
ATOM    137  CA  LEU   137     -13.228  21.233  41.575  1.00 25.00           C
ATOM    138  CA  GLY   138     -10.069  19.819  39.996  1.00 25.00           C
ATOM    139  CA  PHE   139      -7.073  21.061  41.998  1.00 25.00           C
ATOM    140  CA  GLU   140      -7.505  17.745  43.748  1.00 25.00           C
ATOM    141  CA  ILE   141      -9.686  18.133  46.790  1.00 25.00           C
ATOM    142  CA  THR   142     -12.446  16.666  44.647  1.00 25.00           C
ATOM    143  CA  ILE   143     -15.933  18.025  45.113  1.00 25.00           C
TER
END
