
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  143 (  143),  selected  143 , name T0338TS393_3-D1
# Molecule2: number of CA atoms  143 ( 1129),  selected  143 , name T0338_D1.pdb
# PARAMETERS: T0338TS393_3-D1.T0338_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    53        57 - 109         4.91    19.55
  LONGEST_CONTINUOUS_SEGMENT:    53        58 - 110         4.94    19.60
  LCS_AVERAGE:     31.56

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    24       115 - 138         1.65    22.21
  LONGEST_CONTINUOUS_SEGMENT:    24       116 - 139         1.90    21.94
  LCS_AVERAGE:     11.75

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    22       116 - 137         0.73    21.84
  LCS_AVERAGE:      9.25

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  143
LCS_GDT     A       1     A       1      3    4   22     3    3    3    4    5    5    6    8    9   11   14   19   21   23   26   41   43   46   66   70 
LCS_GDT     S       2     S       2      3    6   22     3    3    3    4    7   10   10   13   14   16   16   21   33   40   46   51   59   64   69   72 
LCS_GDT     S       3     S       3      3    6   22     3    3    4    4    5   10   12   13   17   23   26   33   38   44   52   56   60   64   69   72 
LCS_GDT     R       4     R       4      4   10   22     4    4    4    8    9   10   12   13   18   25   30   34   41   46   52   56   60   64   69   72 
LCS_GDT     W       5     W       5      4   10   22     4    4    4    8    9   10   12   13   19   23   28   34   39   46   52   56   60   64   69   72 
LCS_GDT     F       6     F       6      4   10   22     4    4    4    8    9   10   12   13   14   23   28   32   39   44   51   56   60   64   69   71 
LCS_GDT     F       7     F       7      4   10   22     4    4    4    5    7   10   12   13   14   17   23   27   38   43   47   54   59   64   69   71 
LCS_GDT     T       8     T       8      6   10   22     4    4    6    6    9   10   12   13   22   26   31   34   39   43   47   54   56   63   67   70 
LCS_GDT     R       9     R       9      7   10   22     5    5    7    8    9   10   12   13   22   25   31   34   39   43   48   54   59   63   67   71 
LCS_GDT     E      10     E      10      7   10   22     5    5    7    8    9   10   12   13   22   26   31   35   39   43   49   54   60   64   69   71 
LCS_GDT     Q      11     Q      11      7   10   22     5    5    7    8    9   10   13   16   22   28   34   38   43   47   52   56   60   64   69   72 
LCS_GDT     L      12     L      12      7   10   22     5    5    7    8    9   10   13   16   22   28   31   38   43   47   52   56   60   64   69   72 
LCS_GDT     E      13     E      13      7   10   22     5    5    7    8    9   10   12   16   22   26   34   38   43   47   52   56   60   64   69   72 
LCS_GDT     N      14     N      14      7    9   34     3    5    7    8    9   10   15   19   22   28   34   42   48   50   52   56   60   64   69   72 
LCS_GDT     T      15     T      15      7    9   34     3    5    7    8    9   14   15   19   33   37   42   46   48   50   52   56   60   64   69   72 
LCS_GDT     P      16     P      16      5    9   34     1    5    7    8   11   15   20   24   34   37   42   46   48   50   52   55   60   64   69   72 
LCS_GDT     S      17     S      17      3    9   34     3    3    3    5    5    8   10   12   12   16   19   29   33   42   48   52   56   59   63   70 
LCS_GDT     R      18     R      18      3    5   34     3    3    3    5    5    5    6    6    9   14   25   28   32   39   43   55   60   64   69   72 
LCS_GDT     R      19     R      19      3    5   34     3    3    3    6   11   15   20   23   33   37   42   46   48   50   52   56   60   64   69   72 
LCS_GDT     C      20     C      20      3    5   34     3    4    4    5    9   11   18   23   33   37   42   46   48   50   52   56   60   64   69   72 
LCS_GDT     G      21     G      21      3    5   34     3    5    7    9   13   16   22   29   34   37   42   46   48   50   52   56   60   64   69   72 
LCS_GDT     V      22     V      22      3    5   40     3    4    4    9   13   16   22   29   34   37   42   46   48   50   52   56   60   64   69   72 
LCS_GDT     E      23     E      23      3   23   42     3    4    5   10   18   22   27   29   34   37   42   46   48   50   52   56   60   64   69   72 
LCS_GDT     A      24     A      24     21   23   42    21   21   22   22   23   26   27   29   34   37   42   46   48   50   52   55   57   61   67   70 
LCS_GDT     D      25     D      25     21   23   42    21   21   22   22   23   26   27   29   34   37   42   46   48   50   52   56   60   64   69   72 
LCS_GDT     K      26     K      26     21   23   42    21   21   22   22   23   26   27   29   34   37   42   46   48   50   52   56   60   64   69   72 
LCS_GDT     E      27     E      27     21   23   42    21   21   22   22   23   26   27   29   34   37   42   46   48   50   52   56   60   64   69   72 
LCS_GDT     L      28     L      28     21   23   42    21   21   22   22   23   26   27   29   34   37   42   46   48   50   52   56   60   64   69   72 
LCS_GDT     S      29     S      29     21   23   42    21   21   22   22   23   26   27   28   33   37   42   46   48   50   52   56   60   64   69   72 
LCS_GDT     C      30     C      30     21   23   42    21   21   22   22   23   26   27   28   34   37   42   46   48   50   52   56   60   64   69   72 
LCS_GDT     R      31     R      31     21   23   42    21   21   22   22   23   26   27   29   34   37   42   46   48   50   52   56   60   64   69   72 
LCS_GDT     Q      32     Q      32     21   23   42    21   21   22   22   23   26   27   28   30   32   35   41   47   50   52   56   60   64   69   72 
LCS_GDT     Q      33     Q      33     21   23   42    21   21   22   22   23   26   27   28   30   32   35   38   43   48   52   56   60   64   69   72 
LCS_GDT     A      34     A      34     21   23   42    21   21   22   22   23   26   27   28   30   34   42   46   48   50   52   56   60   64   69   72 
LCS_GDT     A      35     A      35     21   23   42    21   21   22   22   23   26   27   28   30   32   35   38   44   48   52   56   60   64   69   72 
LCS_GDT     N      36     N      36     21   23   42    21   21   22   22   23   26   27   28   30   33   38   42   45   49   52   56   60   64   69   72 
LCS_GDT     L      37     L      37     21   23   42    21   21   22   22   23   26   27   28   30   32   35   38   44   49   52   56   60   64   69   72 
LCS_GDT     I      38     I      38     21   23   42    21   21   22   22   23   26   27   29   32   36   38   42   45   49   52   56   60   64   69   72 
LCS_GDT     Q      39     Q      39     21   23   42    21   21   22   22   24   26   27   29   33   36   38   42   45   49   51   53   58   64   69   72 
LCS_GDT     E      40     E      40     21   23   42    21   21   22   22   23   26   27   28   30   32   35   38   41   47   49   51   58   64   69   72 
LCS_GDT     M      41     M      41     21   23   42    21   21   22   22   23   26   27   28   30   32   35   38   41   43   47   51   58   64   69   72 
LCS_GDT     G      42     G      42     21   23   42    21   21   22   22   23   26   27   28   31   32   36   38   42   44   49   52   56   64   66   72 
LCS_GDT     Q      43     Q      43     21   23   42    21   21   22   22   23   26   27   28   30   32   35   38   41   43   45   47   50   62   65   70 
LCS_GDT     R      44     R      44     21   23   42    21   21   22   22   23   26   27   28   30   32   35   38   41   43   45   47   50   57   65   70 
LCS_GDT     L      45     L      45      4   23   42     3    3    6    8    9   16   20   23   29   30   32   34   37   40   45   47   53   64   66   70 
LCS_GDT     N      46     N      46      4    6   42     3    3    4    8    9   12   15   20   25   30   32   33   35   40   46   50   58   64   69   72 
LCS_GDT     V      47     V      47      4    6   45     4    4    6    8    9   12   15   20   25   30   32   33   39   44   50   56   59   64   69   72 
LCS_GDT     S      48     S      48      4   18   51     4    4    6    8    9   19   23   25   29   37   42   46   48   50   52   56   60   64   69   72 
LCS_GDT     Q      49     Q      49     17   18   52    16   17   18   19   21   22   24   29   34   37   42   46   48   50   52   56   60   64   69   72 
LCS_GDT     L      50     L      50     17   18   52    16   17   18   19   21   24   27   29   34   37   42   46   48   50   52   56   60   64   69   72 
LCS_GDT     T      51     T      51     17   18   52    16   17   18   19   21   24   27   29   34   37   42   46   48   50   52   56   60   64   69   72 
LCS_GDT     I      52     I      52     17   18   52    16   17   18   19   21   22   24   29   34   37   42   46   48   50   52   56   60   64   69   72 
LCS_GDT     N      53     N      53     17   18   52    16   17   18   19   21   23   25   28   34   37   42   46   48   50   52   55   58   63   67   70 
LCS_GDT     T      54     T      54     17   18   52    16   17   18   19   21   22   24   27   34   37   42   46   48   50   52   55   59   63   67   71 
LCS_GDT     A      55     A      55     17   18   52    16   17   18   19   21   23   24   27   32   37   41   46   48   52   54   56   60   64   69   72 
LCS_GDT     I      56     I      56     17   18   52    16   17   18   19   21   22   24   27   31   35   39   43   47   50   51   54   58   60   65   69 
LCS_GDT     V      57     V      57     17   18   53    16   17   18   19   21   22   24   27   31   35   39   43   47   50   52   54   58   59   61   64 
LCS_GDT     Y      58     Y      58     17   18   53    16   17   18   19   21   22   25   27   32   36   40   44   49   52   54   56   58   61   67   70 
LCS_GDT     M      59     M      59     17   18   53    16   17   18   19   21   22   25   28   32   36   40   44   49   52   54   56   58   59   62   69 
LCS_GDT     H      60     H      60     17   18   53    16   17   18   19   21   22   25   27   32   36   40   44   49   52   54   56   58   59   60   61 
LCS_GDT     R      61     R      61     17   18   53    16   17   18   19   21   22   24   27   32   36   40   44   47   52   54   56   58   59   60   61 
LCS_GDT     F      62     F      62     17   18   53    16   17   18   19   21   22   24   27   32   36   40   44   49   52   54   56   58   59   61   67 
LCS_GDT     Y      63     Y      63     17   18   53    16   17   18   19   21   22   25   28   32   36   40   44   49   52   54   56   58   59   60   61 
LCS_GDT     M      64     M      64     17   18   53    16   17   18   19   21   22   25   27   32   36   40   44   49   52   54   56   58   59   60   61 
LCS_GDT     H      65     H      65     17   18   53     4   17   18   19   21   22   24   26   29   31   35   41   44   50   54   56   58   59   60   61 
LCS_GDT     H      66     H      66      3   18   53     3    3    4    6   18   22   25   27   32   36   40   44   49   52   54   56   58   59   63   70 
LCS_GDT     S      67     S      67      3    5   53     0    3    4    7   12   26   27   28   32   36   40   44   49   52   54   56   60   64   69   72 
LCS_GDT     F      68     F      68      4    7   53     3    5    5    9   12   19   22   28   32   36   40   44   49   52   54   56   60   64   69   72 
LCS_GDT     T      69     T      69      4    7   53     3    5    5    9    9   16   24   27   32   36   40   44   49   52   54   56   60   64   69   72 
LCS_GDT     K      70     K      70      4   20   53     3    5    5    9   11   16   19   27   31   35   39   43   47   50   54   56   59   64   69   72 
LCS_GDT     F      71     F      71      4   20   53     3    5    5    9   12   15   23   27   31   35   39   43   47   50   54   56   60   64   69   72 
LCS_GDT     N      72     N      72     18   20   53     4   15   18   19   20   22   25   29   34   37   41   46   49   52   54   56   60   64   69   72 
LCS_GDT     K      73     K      73     18   20   53    11   15   18   19   20   22   25   28   32   36   41   46   49   52   54   56   60   64   69   72 
LCS_GDT     N      74     N      74     18   20   53    11   16   18   19   20   22   25   29   34   37   42   46   49   52   54   56   60   63   68   72 
LCS_GDT     I      75     I      75     18   20   53    11   16   18   19   20   22   25   29   34   37   42   46   49   52   54   56   60   64   69   72 
LCS_GDT     I      76     I      76     18   20   53    11   16   18   19   23   26   27   29   34   37   42   46   49   52   54   56   60   64   69   72 
LCS_GDT     S      77     S      77     18   20   53    11   16   18   19   20   22   25   29   34   37   42   46   49   52   54   56   60   64   69   72 
LCS_GDT     S      78     S      78     18   20   53    11   16   18   19   20   22   25   29   34   37   42   46   49   52   54   56   60   64   69   72 
LCS_GDT     T      79     T      79     18   20   53    11   16   18   19   20   26   27   29   34   37   42   46   49   52   54   56   60   64   69   72 
LCS_GDT     A      80     A      80     18   20   53    11   16   18   19   21   22   25   29   34   37   42   46   49   52   54   56   60   64   69   72 
LCS_GDT     L      81     L      81     18   20   53    11   16   18   19   20   22   25   29   34   37   42   46   49   52   54   56   60   64   69   72 
LCS_GDT     F      82     F      82     18   20   53    11   16   18   22   23   26   27   29   34   37   42   46   49   52   54   56   60   64   69   72 
LCS_GDT     L      83     L      83     18   20   53    11   16   18   19   21   22   26   28   34   37   42   46   49   52   54   56   60   64   69   72 
LCS_GDT     A      84     A      84     18   20   53    10   16   18   19   20   22   25   29   34   37   42   46   49   52   54   56   60   64   69   72 
LCS_GDT     A      85     A      85     18   20   53     9   16   18   19   20   22   25   29   34   37   42   46   49   52   54   56   60   64   69   72 
LCS_GDT     K      86     K      86     18   20   53     8   16   18   19   21   22   25   28   34   37   42   46   49   52   54   56   60   64   69   72 
LCS_GDT     V      87     V      87     18   20   53    10   16   18   19   20   22   25   29   34   37   42   46   49   52   54   56   60   64   69   72 
LCS_GDT     E      88     E      88     18   20   53     8   16   18   19   20   22   25   29   34   37   42   46   49   52   54   56   60   64   69   72 
LCS_GDT     E      89     E      89     18   20   53     3   16   18   19   20   22   25   29   34   37   42   46   49   52   54   56   60   64   69   72 
LCS_GDT     Q      90     Q      90      3   20   53     3    4    7   16   20   24   26   28   30   35   40   44   49   52   54   56   58   64   68   72 
LCS_GDT     A      91     A      91      3    5   53     3    3    4    4    7    8   12   24   28   31   35   40   49   52   54   56   58   60   65   70 
LCS_GDT     R      92     R      92      3   14   53     3    3    4    6   11   14   15   19   24   30   39   44   49   52   54   56   58   59   63   67 
LCS_GDT     K      93     K      93     12   15   53     4   12   12   12   14   22   24   27   31   35   39   43   49   52   54   56   58   60   63   67 
LCS_GDT     L      94     L      94     12   15   53    11   12   12   14   19   22   24   26   31   35   39   43   47   52   53   56   58   60   63   68 
LCS_GDT     E      95     E      95     12   15   53    11   12   12   12   14   19   22   26   30   34   39   44   49   52   54   56   58   59   60   63 
LCS_GDT     H      96     H      96     12   15   53    11   12   12   12   17   22   25   28   32   36   40   44   49   52   54   56   58   59   60   62 
LCS_GDT     V      97     V      97     12   15   53    11   12   12   12   18   22   25   28   32   36   40   44   49   52   54   56   58   60   63   67 
LCS_GDT     I      98     I      98     12   15   53    11   12   12   12   14   19   25   28   32   36   40   44   49   52   54   56   58   60   61   64 
LCS_GDT     K      99     K      99     12   15   53    11   12   12   12   14   19   25   28   32   36   40   44   49   52   54   56   58   59   61   62 
LCS_GDT     V     100     V     100     12   15   53    11   12   12   12   14   19   25   28   32   36   40   44   49   52   54   56   58   60   61   62 
LCS_GDT     A     101     A     101     12   15   53    11   12   12   12   14   19   25   28   33   36   40   44   49   52   54   56   58   60   61   62 
LCS_GDT     H     102     H     102     12   15   53    11   12   12   19   24   25   27   29   33   36   40   44   49   52   54   56   58   60   61   62 
LCS_GDT     A     103     A     103     12   15   53    11   12   12   12   14   19   23   27   30   35   40   44   49   52   54   56   58   60   61   62 
LCS_GDT     C     104     C     104     12   15   53    11   12   12   12   14   19   21   25   30   35   40   44   49   52   54   56   58   60   61   62 
LCS_GDT     L     105     L     105      4   15   53     4    4    7   11   14   19   21   25   30   35   39   44   49   52   54   56   58   60   61   62 
LCS_GDT     H     106     H     106      4   15   53     4    4    5    9   14   19   21   25   30   35   39   44   49   52   54   56   58   60   61   62 
LCS_GDT     P     107     P     107      3   15   53     4    4    4    5    7   13   21   25   27   35   39   43   49   52   54   56   57   60   61   62 
LCS_GDT     L     108     L     108      3    6   53     4    4    4    6   12   16   21   27   30   35   40   44   49   52   54   56   58   60   61   62 
LCS_GDT     E     109     E     109      3    6   53     4    4    5    5    6    9   14   18   30   34   38   44   49   52   54   56   58   60   61   62 
LCS_GDT     P     110     P     110      3    6   53     1    3    5    6    8   11   16   22   27   32   36   40   44   45   52   55   58   60   61   62 
LCS_GDT     L     111     L     111      3    6   45     0    3    5    6    9   11   16   21   27   32   35   39   41   45   51   53   56   60   61   62 
LCS_GDT     L     112     L     112      3    6   45     3    3    5    5    7   10   16   21   28   32   36   42   45   49   51   53   56   60   61   62 
LCS_GDT     D     113     D     113      4    5   45     4    4    5    6   12   18   23   27   32   36   38   42   45   49   51   53   56   60   61   62 
LCS_GDT     T     114     T     114      4    5   45     4    4    4    5    5    5    6    9   10   28   32   36   45   49   51   53   56   60   61   62 
LCS_GDT     K     115     K     115      4   24   45     4    4    4    5    9   22   25   28   31   34   36   41   44   49   50   53   55   60   61   62 
LCS_GDT     C     116     C     116     22   24   45    12   20   22   22   24   25   27   29   33   36   38   42   45   49   51   53   56   60   61   62 
LCS_GDT     D     117     D     117     22   24   45    14   20   22   22   24   25   27   29   33   36   39   43   47   50   51   54   57   60   63   67 
LCS_GDT     A     118     A     118     22   24   45    14   20   22   22   24   25   27   29   33   36   39   43   47   50   51   53   56   60   63   67 
LCS_GDT     Y     119     Y     119     22   24   45    14   20   22   22   24   25   27   29   33   36   38   43   47   50   51   53   57   60   63   67 
LCS_GDT     L     120     L     120     22   24   45    14   20   22   22   24   25   27   29   33   36   42   46   48   50   52   54   58   60   63   68 
LCS_GDT     Q     121     Q     121     22   24   45    14   20   22   22   24   25   27   29   33   36   42   46   48   50   52   55   58   60   63   67 
LCS_GDT     Q     122     Q     122     22   24   45    14   20   22   22   24   25   27   29   33   36   42   46   48   50   52   55   58   60   63   68 
LCS_GDT     T     123     T     123     22   24   45    14   20   22   22   24   25   27   29   34   37   42   46   48   50   52   55   58   63   67   72 
LCS_GDT     R     124     R     124     22   24   45    14   20   22   22   24   25   27   29   33   37   42   46   48   50   52   55   58   64   68   72 
LCS_GDT     E     125     E     125     22   24   45    14   20   22   22   24   25   27   29   33   36   38   42   45   49   52   55   58   61   65   70 
LCS_GDT     L     126     L     126     22   24   45    14   20   22   22   24   25   27   29   33   36   41   46   48   50   52   55   59   64   69   72 
LCS_GDT     V     127     V     127     22   24   45    14   20   22   22   24   26   27   29   33   36   38   42   45   49   52   56   60   64   69   72 
LCS_GDT     I     128     I     128     22   24   45    14   20   22   22   24   25   27   29   33   36   38   42   45   49   51   53   58   64   66   72 
LCS_GDT     L     129     L     129     22   24   45    14   20   22   22   24   25   27   29   33   36   38   42   45   49   51   53   57   61   65   70 
LCS_GDT     E     130     E     130     22   24   45    14   20   22   22   24   25   27   29   33   36   38   42   45   49   51   53   59   64   69   72 
LCS_GDT     T     131     T     131     22   24   45    11   20   22   22   24   25   27   29   33   36   38   42   45   49   51   53   56   60   65   69 
LCS_GDT     I     132     I     132     22   24   45    14   20   22   22   24   25   27   29   33   36   38   42   45   49   51   53   56   60   61   62 
LCS_GDT     M     133     M     133     22   24   45    11   20   22   22   24   25   27   29   33   36   38   42   45   49   51   53   56   60   61   62 
LCS_GDT     L     134     L     134     22   24   45    11   20   22   22   24   25   27   29   33   36   38   42   45   49   51   53   56   60   61   62 
LCS_GDT     Q     135     Q     135     22   24   45    11   20   22   22   24   25   27   29   33   36   38   42   45   49   51   53   56   60   61   62 
LCS_GDT     T     136     T     136     22   24   45    11   20   22   22   24   25   27   29   33   36   38   42   45   49   51   53   56   60   61   62 
LCS_GDT     L     137     L     137     22   24   45    11   18   22   22   22   24   26   29   33   36   38   42   45   49   51   53   56   60   61   62 
LCS_GDT     G     138     G     138      3   24   45     3   13   15   18   23   25   26   29   33   36   38   42   45   49   51   53   56   60   61   62 
LCS_GDT     F     139     F     139      3   24   45     3    3    4    7   12   18   20   25   30   34   38   42   45   49   51   53   56   60   61   62 
LCS_GDT     E     140     E     140      3    5   45     3    3    5   10   15   21   26   28   31   36   38   42   45   49   51   53   56   60   61   62 
LCS_GDT     I     141     I     141      3    5   45     3    3    5   21   24   25   27   29   33   36   38   44   49   52   53   56   57   60   61   62 
LCS_GDT     T     142     T     142      3    5   43     3    3    4    5    9   24   27   29   33   36   39   44   49   52   54   56   58   60   61   62 
LCS_GDT     I     143     I     143      3    5   36     3    3    9   18   19   20   25   28   30   35   39   44   49   52   54   56   58   59   60   62 
LCS_AVERAGE  LCS_A:  17.52  (   9.25   11.75   31.56 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     21     21     22     22     24     26     27     29     34     37     42     46     49     52     54     56     60     64     69     72 
GDT PERCENT_CA  14.69  14.69  15.38  15.38  16.78  18.18  18.88  20.28  23.78  25.87  29.37  32.17  34.27  36.36  37.76  39.16  41.96  44.76  48.25  50.35
GDT RMS_LOCAL    0.27   0.27   0.73   0.56   1.41   1.31   1.62   2.02   3.48   3.60   4.05   4.18   4.40   4.61   4.77   4.92   5.83   6.17   6.59   6.81
GDT RMS_ALL_CA  19.37  19.37  21.84  19.09  22.70  19.09  18.97  22.76  15.30  15.30  15.14  15.24  19.62  19.34  19.65  19.61  16.62  16.94  16.89  16.47

#      Molecule1      Molecule2       DISTANCE
LGA    A       1      A       1         39.454
LGA    S       2      S       2         41.383
LGA    S       3      S       3         38.246
LGA    R       4      R       4         33.816
LGA    W       5      W       5         31.545
LGA    F       6      F       6         29.083
LGA    F       7      F       7         27.281
LGA    T       8      T       8         30.686
LGA    R       9      R       9         32.276
LGA    E      10      E      10         36.576
LGA    Q      11      Q      11         35.628
LGA    L      12      L      12         32.293
LGA    E      13      E      13         35.362
LGA    N      14      N      14         39.915
LGA    T      15      T      15         37.842
LGA    P      16      P      16         40.635
LGA    S      17      S      17         40.717
LGA    R      18      R      18         45.927
LGA    R      19      R      19         49.153
LGA    C      20      C      20         47.453
LGA    G      21      G      21         47.512
LGA    V      22      V      22         46.309
LGA    E      23      E      23         48.915
LGA    A      24      A      24         45.453
LGA    D      25      D      25         42.042
LGA    K      26      K      26         39.788
LGA    E      27      E      27         36.719
LGA    L      28      L      28         33.562
LGA    S      29      S      29         30.628
LGA    C      30      C      30         28.324
LGA    R      31      R      31         24.867
LGA    Q      32      Q      32         21.596
LGA    Q      33      Q      33         19.827
LGA    A      34      A      34         16.393
LGA    A      35      A      35         13.155
LGA    N      36      N      36         10.281
LGA    L      37      L      37          9.625
LGA    I      38      I      38          4.435
LGA    Q      39      Q      39          1.969
LGA    E      40      E      40          5.674
LGA    M      41      M      41          6.683
LGA    G      42      G      42          7.570
LGA    Q      43      Q      43         10.727
LGA    R      44      R      44         14.960
LGA    L      45      L      45         14.416
LGA    N      46      N      46         15.649
LGA    V      47      V      47         12.002
LGA    S      48      S      48          9.803
LGA    Q      49      Q      49          9.237
LGA    L      50      L      50          3.136
LGA    T      51      T      51          3.588
LGA    I      52      I      52          7.526
LGA    N      53      N      53          8.576
LGA    T      54      T      54          8.165
LGA    A      55      A      55          8.564
LGA    I      56      I      56         15.061
LGA    V      57      V      57         17.525
LGA    Y      58      Y      58         16.899
LGA    M      59      M      59         19.725
LGA    H      60      H      60         25.558
LGA    R      61      R      61         27.038
LGA    F      62      F      62         26.204
LGA    Y      63      Y      63         31.365
LGA    M      64      M      64         36.114
LGA    H      65      H      65         36.208
LGA    H      66      H      66         33.287
LGA    S      67      S      67         34.630
LGA    F      68      F      68         35.840
LGA    T      69      T      69         41.143
LGA    K      70      K      70         38.833
LGA    F      71      F      71         31.722
LGA    N      72      N      72         26.454
LGA    K      73      K      73         24.177
LGA    N      74      N      74         18.655
LGA    I      75      I      75         14.899
LGA    I      76      I      76         16.607
LGA    S      77      S      77         14.056
LGA    S      78      S      78          7.740
LGA    T      79      T      79          8.645
LGA    A      80      A      80          8.317
LGA    L      81      L      81          6.067
LGA    F      82      F      82          4.983
LGA    L      83      L      83          6.256
LGA    A      84      A      84          4.912
LGA    A      85      A      85         10.517
LGA    K      86      K      86         12.966
LGA    V      87      V      87         10.425
LGA    E      88      E      88         13.842
LGA    E      89      E      89         20.237
LGA    Q      90      Q      90         23.228
LGA    A      91      A      91         25.154
LGA    R      92      R      92         23.786
LGA    K      93      K      93         19.988
LGA    L      94      L      94         13.360
LGA    E      95      E      95         16.529
LGA    H      96      H      96         17.466
LGA    V      97      V      97         11.182
LGA    I      98      I      98          7.333
LGA    K      99      K      99         11.452
LGA    V     100      V     100         12.620
LGA    A     101      A     101          6.822
LGA    H     102      H     102          3.936
LGA    A     103      A     103         10.486
LGA    C     104      C     104         12.859
LGA    L     105      L     105         12.352
LGA    H     106      H     106          9.392
LGA    P     107      P     107         14.534
LGA    L     108      L     108         15.899
LGA    E     109      E     109         13.652
LGA    P     110      P     110         13.992
LGA    L     111      L     111         12.071
LGA    L     112      L     112          9.315
LGA    D     113      D     113          7.927
LGA    T     114      T     114          9.245
LGA    K     115      K     115          5.885
LGA    C     116      C     116          1.436
LGA    D     117      D     117          0.813
LGA    A     118      A     118          1.373
LGA    Y     119      Y     119          1.251
LGA    L     120      L     120          0.862
LGA    Q     121      Q     121          1.131
LGA    Q     122      Q     122          1.219
LGA    T     123      T     123          0.669
LGA    R     124      R     124          1.122
LGA    E     125      E     125          1.598
LGA    L     126      L     126          1.123
LGA    V     127      V     127          0.525
LGA    I     128      I     128          1.461
LGA    L     129      L     129          1.667
LGA    E     130      E     130          0.841
LGA    T     131      T     131          0.142
LGA    I     132      I     132          1.226
LGA    M     133      M     133          1.944
LGA    L     134      L     134          1.668
LGA    Q     135      Q     135          0.671
LGA    T     136      T     136          2.177
LGA    L     137      L     137          3.392
LGA    G     138      G     138          3.985
LGA    F     139      F     139          6.770
LGA    E     140      E     140          6.126
LGA    I     141      I     141          2.146
LGA    T     142      T     142          3.667
LGA    I     143      I     143          9.654

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  143  143    4.0     29    2.02    22.378    19.939     1.371

LGA_LOCAL      RMSD =  2.015  Number of atoms =   29  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 22.493  Number of atoms =  143 
Std_ALL_ATOMS  RMSD = 14.503  (standard rmsd on all 143 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.018305 * X  +   0.650023 * Y  +  -0.759694 * Z  + -22.500547
  Y_new =   0.718293 * X  +  -0.537094 * Y  +  -0.442251 * Z  +  39.217972
  Z_new =  -0.695500 * X  +  -0.537587 * Y  +  -0.476739 * Z  +  50.412601 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -2.296277    0.845315  [ DEG:  -131.5670     48.4330 ]
  Theta =   0.769116    2.372477  [ DEG:    44.0671    135.9329 ]
  Phi   =   1.545318   -1.596275  [ DEG:    88.5402    -91.4598 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0338TS393_3-D1                               
REMARK     2: T0338_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0338TS393_3-D1.T0338_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  143  143   4.0   29   2.02  19.939    14.50
REMARK  ---------------------------------------------------------- 
MOLECULE T0338TS393_3-D1
PFRMAT TS
TARGET T0338
MODEL 3
PARENT N/A
ATOM      1  CA  ALA     1       8.984  33.300  61.688  1.00 25.00           C
ATOM      2  CA  SER     2       8.141  37.001  61.152  1.00 25.00           C
ATOM      3  CA  SER     3       4.673  36.797  59.673  1.00 25.00           C
ATOM      4  CA  ARG     4       2.101  35.685  62.328  1.00 25.00           C
ATOM      5  CA  TRP     5      -0.250  38.387  60.957  1.00 25.00           C
ATOM      6  CA  PHE     6      -2.959  35.827  60.556  1.00 25.00           C
ATOM      7  CA  PHE     7      -5.394  34.935  63.397  1.00 25.00           C
ATOM      8  CA  THR     8      -8.237  36.369  65.474  1.00 25.00           C
ATOM      9  CA  ARG     9      -8.912  38.108  68.790  1.00 25.00           C
ATOM     10  CA  GLU    10      -6.811  40.558  70.850  1.00 25.00           C
ATOM     11  CA  GLN    11      -6.696  42.987  67.891  1.00 25.00           C
ATOM     12  CA  LEU    12     -10.497  42.730  67.502  1.00 25.00           C
ATOM     13  CA  GLU    13     -10.952  43.429  71.240  1.00 25.00           C
ATOM     14  CA  ASN    14      -9.985  46.098  73.684  1.00 25.00           C
ATOM     15  CA  THR    15     -10.897  48.489  70.893  1.00 25.00           C
ATOM     16  CA  PRO    16     -12.257  51.103  73.342  1.00 25.00           C
ATOM     17  CA  SER    17     -10.433  53.998  75.043  1.00 25.00           C
ATOM     18  CA  ARG    18      -9.539  57.684  74.321  1.00 25.00           C
ATOM     19  CA  ARG    19     -12.549  59.106  72.463  1.00 25.00           C
ATOM     20  CA  CYS    20     -16.326  58.765  72.784  1.00 25.00           C
ATOM     21  CA  GLY    21     -18.622  58.612  69.782  1.00 25.00           C
ATOM     22  CA  VAL    22     -22.391  58.115  70.143  1.00 25.00           C
ATOM     23  CA  GLU    23     -25.940  57.097  70.991  1.00 25.00           C
ATOM     24  CA  ALA    24     -26.203  53.768  69.133  1.00 25.00           C
ATOM     25  CA  ASP    25     -26.990  51.083  71.749  1.00 25.00           C
ATOM     26  CA  LYS    26     -29.008  49.114  69.157  1.00 25.00           C
ATOM     27  CA  GLU    27     -26.100  49.352  66.676  1.00 25.00           C
ATOM     28  CA  LEU    28     -23.672  48.109  69.364  1.00 25.00           C
ATOM     29  CA  SER    29     -26.004  45.173  70.147  1.00 25.00           C
ATOM     30  CA  CYS    30     -26.202  44.306  66.421  1.00 25.00           C
ATOM     31  CA  ARG    31     -22.383  44.413  66.167  1.00 25.00           C
ATOM     32  CA  GLN    32     -22.091  42.113  69.215  1.00 25.00           C
ATOM     33  CA  GLN    33     -24.593  39.675  67.645  1.00 25.00           C
ATOM     34  CA  ALA    34     -22.596  39.693  64.377  1.00 25.00           C
ATOM     35  CA  ALA    35     -19.368  38.995  66.317  1.00 25.00           C
ATOM     36  CA  ASN    36     -21.066  36.089  68.145  1.00 25.00           C
ATOM     37  CA  LEU    37     -22.284  34.667  64.805  1.00 25.00           C
ATOM     38  CA  ILE    38     -18.744  34.936  63.370  1.00 25.00           C
ATOM     39  CA  GLN    39     -17.336  33.135  66.443  1.00 25.00           C
ATOM     40  CA  GLU    40     -19.945  30.362  66.045  1.00 25.00           C
ATOM     41  CA  MET    41     -19.028  29.996  62.344  1.00 25.00           C
ATOM     42  CA  GLY    42     -15.316  29.767  63.262  1.00 25.00           C
ATOM     43  CA  GLN    43     -16.104  27.083  65.879  1.00 25.00           C
ATOM     44  CA  ARG    44     -18.122  25.114  63.286  1.00 25.00           C
ATOM     45  CA  LEU    45     -21.246  25.335  65.527  1.00 25.00           C
ATOM     46  CA  ASN    46     -23.873  22.702  66.476  1.00 25.00           C
ATOM     47  CA  VAL    47     -25.849  22.895  63.220  1.00 25.00           C
ATOM     48  CA  SER    48     -27.904  22.636  59.983  1.00 25.00           C
ATOM     49  CA  GLN    49     -26.489  24.767  57.169  1.00 25.00           C
ATOM     50  CA  LEU    50     -24.907  26.778  60.019  1.00 25.00           C
ATOM     51  CA  THR    51     -22.708  28.655  57.507  1.00 25.00           C
ATOM     52  CA  ILE    52     -25.784  29.434  55.362  1.00 25.00           C
ATOM     53  CA  ASN    53     -27.643  30.726  58.451  1.00 25.00           C
ATOM     54  CA  THR    54     -24.652  32.940  59.356  1.00 25.00           C
ATOM     55  CA  ALA    55     -24.561  34.320  55.784  1.00 25.00           C
ATOM     56  CA  ILE    56     -28.313  35.067  55.951  1.00 25.00           C
ATOM     57  CA  VAL    57     -27.830  36.868  59.296  1.00 25.00           C
ATOM     58  CA  TYR    58     -24.974  38.935  57.799  1.00 25.00           C
ATOM     59  CA  MET    59     -27.179  39.857  54.806  1.00 25.00           C
ATOM     60  CA  HIS    60     -29.998  40.910  57.174  1.00 25.00           C
ATOM     61  CA  ARG    61     -27.544  43.063  59.177  1.00 25.00           C
ATOM     62  CA  PHE    62     -26.306  44.703  55.945  1.00 25.00           C
ATOM     63  CA  TYR    63     -29.919  45.421  54.896  1.00 25.00           C
ATOM     64  CA  MET    64     -30.632  46.972  58.325  1.00 25.00           C
ATOM     65  CA  HIS    65     -27.501  49.156  58.014  1.00 25.00           C
ATOM     66  CA  HIS    66     -25.636  47.304  60.774  1.00 25.00           C
ATOM     67  CA  SER    67     -23.355  50.309  60.638  1.00 25.00           C
ATOM     68  CA  PHE    68     -26.073  52.869  61.093  1.00 25.00           C
ATOM     69  CA  THR    69     -27.704  56.270  61.467  1.00 25.00           C
ATOM     70  CA  LYS    70     -26.979  56.599  57.781  1.00 25.00           C
ATOM     71  CA  PHE    71     -24.349  54.128  56.457  1.00 25.00           C
ATOM     72  CA  ASN    72     -23.471  50.593  55.247  1.00 25.00           C
ATOM     73  CA  LYS    73     -24.285  47.382  53.377  1.00 25.00           C
ATOM     74  CA  ASN    74     -20.772  46.847  51.950  1.00 25.00           C
ATOM     75  CA  ILE    75     -19.504  45.784  55.404  1.00 25.00           C
ATOM     76  CA  ILE    76     -22.420  43.325  55.745  1.00 25.00           C
ATOM     77  CA  SER    77     -21.638  41.879  52.287  1.00 25.00           C
ATOM     78  CA  SER    78     -17.956  41.477  53.260  1.00 25.00           C
ATOM     79  CA  THR    79     -18.979  39.701  56.495  1.00 25.00           C
ATOM     80  CA  ALA    80     -21.268  37.357  54.511  1.00 25.00           C
ATOM     81  CA  LEU    81     -18.412  36.585  52.079  1.00 25.00           C
ATOM     82  CA  PHE    82     -16.078  35.834  55.021  1.00 25.00           C
ATOM     83  CA  LEU    83     -18.707  33.504  56.545  1.00 25.00           C
ATOM     84  CA  ALA    84     -19.092  31.701  53.188  1.00 25.00           C
ATOM     85  CA  ALA    85     -15.292  31.295  52.943  1.00 25.00           C
ATOM     86  CA  LYS    86     -15.190  29.876  56.498  1.00 25.00           C
ATOM     87  CA  VAL    87     -17.987  27.413  55.622  1.00 25.00           C
ATOM     88  CA  GLU    88     -16.080  26.324  52.484  1.00 25.00           C
ATOM     89  CA  GLU    89     -12.823  24.538  53.426  1.00 25.00           C
ATOM     90  CA  GLN    90      -9.424  24.099  55.090  1.00 25.00           C
ATOM     91  CA  ALA    91      -5.685  24.524  54.774  1.00 25.00           C
ATOM     92  CA  ARG    92      -4.599  27.416  52.469  1.00 25.00           C
ATOM     93  CA  LYS    93      -7.384  29.911  51.811  1.00 25.00           C
ATOM     94  CA  LEU    94     -10.052  32.153  53.344  1.00 25.00           C
ATOM     95  CA  GLU    95      -7.495  32.794  56.123  1.00 25.00           C
ATOM     96  CA  HIS    96      -5.355  34.860  53.710  1.00 25.00           C
ATOM     97  CA  VAL    97      -8.433  36.895  52.684  1.00 25.00           C
ATOM     98  CA  ILE    98      -9.281  37.515  56.366  1.00 25.00           C
ATOM     99  CA  LYS    99      -5.686  38.658  57.027  1.00 25.00           C
ATOM    100  CA  VAL   100      -5.863  41.033  54.028  1.00 25.00           C
ATOM    101  CA  ALA   101      -9.174  42.459  55.323  1.00 25.00           C
ATOM    102  CA  HIS   102      -7.624  42.981  58.786  1.00 25.00           C
ATOM    103  CA  ALA   103      -4.629  44.768  57.202  1.00 25.00           C
ATOM    104  CA  CYS   104      -6.997  47.018  55.202  1.00 25.00           C
ATOM    105  CA  LEU   105      -6.115  50.193  57.203  1.00 25.00           C
ATOM    106  CA  HIS   106      -2.759  50.333  59.002  1.00 25.00           C
ATOM    107  CA  PRO   107      -1.005  53.098  57.101  1.00 25.00           C
ATOM    108  CA  LEU   108       1.125  54.611  54.356  1.00 25.00           C
ATOM    109  CA  GLU   109      -0.480  58.029  54.691  1.00 25.00           C
ATOM    110  CA  PRO   110      -1.326  58.075  51.006  1.00 25.00           C
ATOM    111  CA  LEU   111      -4.805  56.751  51.831  1.00 25.00           C
ATOM    112  CA  LEU   112      -8.518  56.634  50.898  1.00 25.00           C
ATOM    113  CA  ASP   113      -7.630  55.271  47.431  1.00 25.00           C
ATOM    114  CA  THR   114      -5.409  52.589  49.027  1.00 25.00           C
ATOM    115  CA  LYS   115      -8.253  51.612  51.398  1.00 25.00           C
ATOM    116  CA  CYS   116     -10.670  51.362  48.438  1.00 25.00           C
ATOM    117  CA  ASP   117      -8.171  49.155  46.554  1.00 25.00           C
ATOM    118  CA  ALA   118      -7.807  46.900  49.628  1.00 25.00           C
ATOM    119  CA  TYR   119     -11.616  46.619  49.905  1.00 25.00           C
ATOM    120  CA  LEU   120     -11.842  45.699  46.194  1.00 25.00           C
ATOM    121  CA  GLN   121      -9.139  43.029  46.666  1.00 25.00           C
ATOM    122  CA  GLN   122     -11.036  41.604  49.672  1.00 25.00           C
ATOM    123  CA  THR   123     -14.265  41.499  47.615  1.00 25.00           C
ATOM    124  CA  ARG   124     -12.430  39.688  44.782  1.00 25.00           C
ATOM    125  CA  GLU   125     -11.023  37.151  47.282  1.00 25.00           C
ATOM    126  CA  LEU   126     -14.530  36.571  48.706  1.00 25.00           C
ATOM    127  CA  VAL   127     -15.904  36.039  45.172  1.00 25.00           C
ATOM    128  CA  ILE   128     -13.104  33.532  44.434  1.00 25.00           C
ATOM    129  CA  LEU   129     -13.886  31.664  47.685  1.00 25.00           C
ATOM    130  CA  GLU   130     -17.600  31.548  46.752  1.00 25.00           C
ATOM    131  CA  THR   131     -16.711  30.185  43.285  1.00 25.00           C
ATOM    132  CA  ILE   132     -14.491  27.503  44.881  1.00 25.00           C
ATOM    133  CA  MET   133     -17.335  26.526  47.253  1.00 25.00           C
ATOM    134  CA  LEU   134     -19.751  26.275  44.292  1.00 25.00           C
ATOM    135  CA  GLN   135     -17.253  24.068  42.408  1.00 25.00           C
ATOM    136  CA  THR   136     -16.889  21.814  45.483  1.00 25.00           C
ATOM    137  CA  LEU   137     -20.697  21.533  45.758  1.00 25.00           C
ATOM    138  CA  GLY   138     -19.926  18.907  48.360  1.00 25.00           C
ATOM    139  CA  PHE   139     -17.819  21.662  50.039  1.00 25.00           C
ATOM    140  CA  GLU   140     -20.113  21.342  53.039  1.00 25.00           C
ATOM    141  CA  ILE   141     -22.588  23.606  51.166  1.00 25.00           C
ATOM    142  CA  THR   142     -25.532  22.307  49.061  1.00 25.00           C
ATOM    143  CA  ILE   143     -25.950  25.768  47.625  1.00 25.00           C
TER
END
