
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  143 (  143),  selected  143 , name T0338TS393_5-D1
# Molecule2: number of CA atoms  143 ( 1129),  selected  143 , name T0338_D1.pdb
# PARAMETERS: T0338TS393_5-D1.T0338_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    48        21 - 68          4.81    21.54
  LONGEST_CONTINUOUS_SEGMENT:    48        22 - 69          4.76    21.53
  LCS_AVERAGE:     28.64

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    26        22 - 47          2.00    17.43
  LONGEST_CONTINUOUS_SEGMENT:    26       116 - 141         2.00    21.69
  LCS_AVERAGE:     13.07

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    23        23 - 45          0.84    17.31
  LCS_AVERAGE:      9.89

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  143
LCS_GDT     A       1     A       1      3    4   26     3    3    3    3    3    4    7    8    9   12   14   25   27   29   31   34   38   52   59   62 
LCS_GDT     S       2     S       2      3    7   28     3    3    3    5   11   13   14   15   16   20   23   25   36   48   50   57   60   62   65   71 
LCS_GDT     S       3     S       3      5   11   28     3    3    5    6   16   18   19   27   35   40   44   47   52   53   56   60   66   69   72   74 
LCS_GDT     R       4     R       4      5   11   28     3    4    9   15   17   24   29   33   37   42   45   47   52   53   56   60   66   69   72   74 
LCS_GDT     W       5     W       5      5   11   28     3    4    6   12   16   18   19   21   28   32   44   47   52   53   56   60   66   69   72   74 
LCS_GDT     F       6     F       6      5   11   28     3    4    7    8   12   13   16   20   24   32   39   44   52   53   56   60   66   69   72   74 
LCS_GDT     F       7     F       7      5   11   28     3    4    7    8   12   13   14   17   24   31   39   44   52   53   56   60   66   69   72   74 
LCS_GDT     T       8     T       8      6   11   28     3    4    9   11   12   13   14   16   17   21   27   32   43   49   55   59   66   69   72   74 
LCS_GDT     R       9     R       9      7   11   28     5    6    9   11   12   13   14   16   17   21   27   32   43   49   55   60   66   69   72   74 
LCS_GDT     E      10     E      10      7   11   28     5    6    8   11   12   13   14   16   17   23   29   34   44   49   55   60   66   69   72   74 
LCS_GDT     Q      11     Q      11      7   11   37     5    6    9   11   12   13   17   22   27   34   44   46   52   53   56   60   66   69   72   74 
LCS_GDT     L      12     L      12      7   11   37     5    6    9   11   12   13   14   19   25   35   40   46   52   53   56   60   66   69   72   74 
LCS_GDT     E      13     E      13      7   11   37     5    6    9   11   12   13   14   16   17   23   30   39   45   51   56   60   66   69   72   74 
LCS_GDT     N      14     N      14      7   11   37     4    6    9   11   12   13   14   16   16   18   21   30   36   46   53   58   64   68   70   74 
LCS_GDT     T      15     T      15      7   11   37     4    6    9   11   12   13   20   25   29   35   39   44   51   53   56   60   66   69   72   74 
LCS_GDT     P      16     P      16      6   11   37     3    5    9   11   12   15   22   25   28   31   39   44   48   50   53   56   61   64   69   73 
LCS_GDT     S      17     S      17      3   10   37     3    3    4    4    6   11   14   15   16   17   18   20   24   26   30   34   45   53   55   59 
LCS_GDT     R      18     R      18      3    4   37     3    3    3    4    5    5    7    9    9   13   16   18   34   36   49   56   63   67   70   74 
LCS_GDT     R      19     R      19      3    7   37     0    3    5    6   11   18   22   26   31   35   39   44   51   53   56   60   66   69   72   74 
LCS_GDT     C      20     C      20      4    7   37     0    3    5    6    9   11   16   23   27   34   39   44   51   53   56   60   66   69   72   74 
LCS_GDT     G      21     G      21      4    7   48     3    3    5    6   11   18   26   29   36   41   45   47   52   53   56   60   66   69   72   74 
LCS_GDT     V      22     V      22      4   26   48     3    3    5   14   16   20   30   34   38   42   45   47   52   53   56   60   66   69   72   74 
LCS_GDT     E      23     E      23     23   26   48     3    3   21   23   26   28   31   34   38   42   45   47   52   53   56   60   66   69   72   74 
LCS_GDT     A      24     A      24     23   26   48    19   21   21   23   26   28   31   34   38   42   45   47   52   53   56   60   66   69   72   74 
LCS_GDT     D      25     D      25     23   26   48    19   21   21   23   26   28   31   34   38   42   45   47   52   53   56   60   66   69   72   74 
LCS_GDT     K      26     K      26     23   26   48    19   21   21   23   26   28   31   34   38   42   45   47   52   53   56   60   66   69   72   74 
LCS_GDT     E      27     E      27     23   26   48    19   21   21   23   26   28   31   34   38   42   45   47   52   53   56   60   66   69   72   74 
LCS_GDT     L      28     L      28     23   26   48    19   21   21   23   26   28   31   34   38   42   45   47   52   53   56   60   66   69   72   74 
LCS_GDT     S      29     S      29     23   26   48    19   21   21   23   26   28   31   34   38   42   45   47   52   53   56   60   66   69   72   74 
LCS_GDT     C      30     C      30     23   26   48    19   21   21   23   26   28   31   34   38   42   45   47   52   53   56   60   66   69   72   74 
LCS_GDT     R      31     R      31     23   26   48    19   21   21   23   26   28   31   34   38   42   45   47   52   53   56   60   66   69   72   74 
LCS_GDT     Q      32     Q      32     23   26   48    19   21   21   23   26   28   31   34   38   42   45   47   52   53   56   60   66   69   72   74 
LCS_GDT     Q      33     Q      33     23   26   48    19   21   22   23   26   28   31   34   38   42   45   47   52   53   56   60   66   69   72   74 
LCS_GDT     A      34     A      34     23   26   48    19   21   21   23   26   28   31   34   38   42   45   47   52   53   56   60   66   69   72   74 
LCS_GDT     A      35     A      35     23   26   48    19   21   21   23   26   28   31   34   38   42   45   47   52   53   56   60   66   69   72   74 
LCS_GDT     N      36     N      36     23   26   48    19   21   21   23   26   28   31   34   38   42   45   47   52   53   56   60   66   69   72   74 
LCS_GDT     L      37     L      37     23   26   48    19   21   21   23   26   28   31   34   38   42   45   47   52   53   56   60   66   69   72   74 
LCS_GDT     I      38     I      38     23   26   48    19   21   21   23   26   28   31   34   38   42   45   47   52   53   56   60   66   69   72   74 
LCS_GDT     Q      39     Q      39     23   26   48    19   21   21   23   26   28   31   34   38   42   45   47   52   53   56   60   66   69   72   74 
LCS_GDT     E      40     E      40     23   26   48    19   21   21   23   26   28   31   34   38   42   45   47   52   53   56   60   66   69   72   74 
LCS_GDT     M      41     M      41     23   26   48    19   21   21   23   26   28   31   34   38   42   45   47   52   53   56   60   66   69   72   74 
LCS_GDT     G      42     G      42     23   26   48    19   21   21   23   26   28   31   34   38   42   45   47   52   53   56   60   66   69   72   74 
LCS_GDT     Q      43     Q      43     23   26   48    19   21   21   23   26   28   31   34   38   42   45   47   52   53   56   60   66   69   72   74 
LCS_GDT     R      44     R      44     23   26   48    19   21   21   23   26   28   31   34   38   42   45   47   52   53   56   60   66   69   72   74 
LCS_GDT     L      45     L      45     23   26   48     3    4    9   20   22   25   30   33   37   42   45   47   52   53   56   59   62   67   72   74 
LCS_GDT     N      46     N      46      4   26   48     3    3    9   17   21   26   28   31   37   42   45   47   52   53   56   60   66   69   72   74 
LCS_GDT     V      47     V      47     19   26   48     3   18   19   20   20   26   28   30   37   41   45   47   52   53   56   60   66   69   72   74 
LCS_GDT     S      48     S      48     19   22   48    17   18   19   20   20   22   23   29   37   41   44   46   47   51   56   60   66   69   72   74 
LCS_GDT     Q      49     Q      49     19   22   48    17   18   19   20   20   22   23   28   32   37   41   44   47   50   51   54   56   64   68   73 
LCS_GDT     L      50     L      50     19   22   48    17   18   19   20   20   22   23   28   32   38   44   46   47   50   51   54   56   61   68   73 
LCS_GDT     T      51     T      51     19   22   48    17   18   19   20   20   22   23   29   37   41   44   46   47   50   55   60   66   69   72   74 
LCS_GDT     I      52     I      52     19   22   48    17   18   19   20   20   22   23   29   37   41   44   46   47   50   56   60   66   69   72   74 
LCS_GDT     N      53     N      53     19   22   48    17   18   19   20   20   22   23   28   32   38   44   46   47   50   51   53   56   58   65   72 
LCS_GDT     T      54     T      54     19   22   48    17   18   19   20   20   22   23   29   37   41   44   46   47   50   51   53   54   58   66   72 
LCS_GDT     A      55     A      55     19   22   48    17   18   19   20   20   22   23   29   37   41   44   46   47   50   55   60   66   69   72   74 
LCS_GDT     I      56     I      56     19   22   48    17   18   19   20   20   22   23   29   37   41   44   46   47   50   51   56   64   68   70   73 
LCS_GDT     V      57     V      57     19   22   48    17   18   19   20   20   22   23   29   37   41   44   46   47   50   51   53   54   55   58   67 
LCS_GDT     Y      58     Y      58     19   22   48    17   18   19   20   20   22   23   29   37   41   44   46   47   50   51   53   58   60   63   69 
LCS_GDT     M      59     M      59     19   22   48    17   18   19   20   20   22   23   29   37   41   44   46   48   51   55   59   66   69   72   74 
LCS_GDT     H      60     H      60     19   22   48    17   18   19   20   20   22   23   29   37   41   44   46   47   50   51   53   58   62   66   68 
LCS_GDT     R      61     R      61     19   22   48    17   18   19   20   20   22   23   29   37   41   44   46   48   51   55   59   62   63   66   68 
LCS_GDT     F      62     F      62     19   22   48    17   18   19   20   20   22   24   29   33   41   44   46   48   51   55   59   62   63   66   68 
LCS_GDT     Y      63     Y      63     19   22   48    17   18   19   20   20   22   23   28   37   41   44   46   48   51   55   59   62   63   67   73 
LCS_GDT     M      64     M      64     19   22   48    17   18   19   20   20   22   23   29   37   41   44   46   47   50   55   59   62   63   66   68 
LCS_GDT     H      65     H      65     19   22   48     4   18   19   20   20   22   23   28   33   37   44   46   48   51   55   59   62   63   66   68 
LCS_GDT     H      66     H      66      6   22   48     3    5    8   15   20   22   24   30   37   41   44   46   47   50   51   53   54   60   65   68 
LCS_GDT     S      67     S      67      6   22   48     3    5    6   12   22   26   28   30   35   39   44   46   47   50   51   54   59   64   67   73 
LCS_GDT     F      68     F      68      6   11   48     4    5    7   14   24   25   31   33   37   42   45   47   52   53   56   60   66   69   72   74 
LCS_GDT     T      69     T      69      6   11   48     4    4    6    8   13   28   31   33   37   42   45   47   52   53   56   60   66   69   72   74 
LCS_GDT     K      70     K      70      4    5   46     4    4    4    8   11   17   22   28   37   42   45   47   52   53   56   60   66   69   72   74 
LCS_GDT     F      71     F      71      4    5   46     4    4    4    6   10   16   22   33   38   42   45   47   52   53   56   60   66   69   72   74 
LCS_GDT     N      72     N      72      4   18   46     3    4    5   11   13   20   26   31   38   41   45   47   52   53   56   60   66   69   72   74 
LCS_GDT     K      73     K      73     16   18   46    11   15   16   16   16   18   23   28   32   37   41   45   48   51   56   60   65   69   72   74 
LCS_GDT     N      74     N      74     16   18   46    11   15   16   16   16   20   21   28   32   37   45   46   51   53   56   60   66   69   72   74 
LCS_GDT     I      75     I      75     16   18   46    11   15   16   16   17   20   26   31   38   42   45   47   52   53   56   60   66   69   72   74 
LCS_GDT     I      76     I      76     16   18   46    11   15   16   16   17   20   26   31   38   42   45   47   52   53   56   60   66   69   72   74 
LCS_GDT     S      77     S      77     16   18   46    11   15   16   20   24   26   28   30   38   42   45   47   52   53   56   60   66   69   72   74 
LCS_GDT     S      78     S      78     16   18   46    11   15   16   19   25   26   31   34   38   42   45   47   52   53   56   60   66   69   72   74 
LCS_GDT     T      79     T      79     16   18   46    11   15   16   23   26   28   31   34   38   42   45   47   52   53   56   60   66   69   72   74 
LCS_GDT     A      80     A      80     16   18   46    11   15   16   23   26   28   31   34   38   42   45   47   52   53   56   60   66   69   72   74 
LCS_GDT     L      81     L      81     16   18   46    11   15   16   16   16   18   31   34   38   42   45   47   52   53   56   60   66   69   72   74 
LCS_GDT     F      82     F      82     16   18   46    11   15   16   16   26   28   31   34   38   42   45   47   52   53   56   60   66   69   72   74 
LCS_GDT     L      83     L      83     16   18   46    11   15   16   16   25   27   31   34   38   42   45   47   52   53   56   60   66   69   72   74 
LCS_GDT     A      84     A      84     16   18   46    11   15   16   16   16   19   26   34   38   42   45   47   52   53   56   60   66   69   72   74 
LCS_GDT     A      85     A      85     16   18   46    10   15   16   16   16   18   26   34   38   42   45   47   52   53   56   60   66   69   72   74 
LCS_GDT     K      86     K      86     16   18   46     9   15   16   16   16   19   26   34   38   42   45   47   51   53   56   58   63   69   72   74 
LCS_GDT     V      87     V      87     16   18   46    11   15   16   16   16   18   26   34   38   41   45   47   51   53   56   58   63   66   72   74 
LCS_GDT     E      88     E      88     16   18   46     7   15   16   16   16   18   22   25   35   41   45   47   51   53   56   58   63   66   72   74 
LCS_GDT     E      89     E      89      3   18   46     3    3    5   12   16   18   19   24   29   34   39   42   45   46   49   52   53   55   57   58 
LCS_GDT     Q      90     Q      90      3   11   46     3    4    6    8   10   14   18   19   21   23   28   34   41   45   49   52   53   55   59   63 
LCS_GDT     A      91     A      91      4   14   46     3    4    5    8   10   12   15   17   21   22   28   34   41   45   49   52   54   58   61   66 
LCS_GDT     R      92     R      92     13   14   46     3    4   11   13   13   17   18   20   22   25   28   33   39   44   47   52   58   59   63   67 
LCS_GDT     K      93     K      93     13   14   27     3    4   10   13   13   17   18   20   22   25   28   29   36   40   45   51   58   59   62   67 
LCS_GDT     L      94     L      94     13   14   27    11   11   11   13   13   17   18   20   22   25   30   35   40   48   51   53   58   60   64   67 
LCS_GDT     E      95     E      95     13   14   27    11   11   11   13   13   17   18   20   22   25   32   38   44   46   49   53   58   60   63   67 
LCS_GDT     H      96     H      96     13   14   33    11   11   11   13   13   17   19   26   31   31   36   39   44   49   51   53   58   60   64   68 
LCS_GDT     V      97     V      97     13   14   36    11   11   11   13   13   20   27   28   34   36   41   43   48   51   54   57   61   63   66   68 
LCS_GDT     I      98     I      98     13   14   36    11   11   11   13   13   17   28   30   34   37   41   43   48   51   55   59   62   63   66   68 
LCS_GDT     K      99     K      99     13   14   36    11   11   11   13   13   17   28   30   34   37   41   43   48   51   55   59   62   63   66   68 
LCS_GDT     V     100     V     100     13   14   36    11   11   11   13   15   22   26   29   34   37   41   43   48   51   55   59   62   63   66   68 
LCS_GDT     A     101     A     101     13   14   36    11   11   11   13   17   19   24   29   33   37   41   43   48   51   55   59   62   63   66   68 
LCS_GDT     H     102     H     102     13   14   36    11   11   11   13   13   17   23   30   33   37   40   43   48   51   55   59   62   63   66   68 
LCS_GDT     A     103     A     103     13   14   36    11   11   11   15   17   19   24   29   33   37   41   43   48   51   55   59   62   63   66   68 
LCS_GDT     C     104     C     104     13   14   36    11   11   11   20   20   20   21   21   22   25   36   42   46   51   55   59   62   63   66   68 
LCS_GDT     L     105     L     105      4   14   36     3    4    5    6    9   14   16   18   21   25   30   36   44   49   54   58   62   63   66   68 
LCS_GDT     H     106     H     106      4   13   36     3    4    5    6    9   10   15   17   23   29   36   42   46   51   55   59   62   63   66   68 
LCS_GDT     P     107     P     107      3    8   36     3    3    5    6    9   17   18   20   22   25   30   36   44   46   53   58   62   63   66   68 
LCS_GDT     L     108     L     108      3    8   36     3    3    5    6    9   10   15   20   22   25   30   36   44   46   51   58   62   63   66   68 
LCS_GDT     E     109     E     109      3    8   36     3    3    4    5    6    9   10   16   19   23   25   29   36   45   49   54   60   63   66   68 
LCS_GDT     P     110     P     110      3    8   36     3    3    4    6    9   10   14   16   23   27   36   42   46   51   55   59   62   63   66   68 
LCS_GDT     L     111     L     111      3    8   36     3    3    4    6    9    9   11   14   20   26   34   42   48   51   55   59   62   63   66   68 
LCS_GDT     L     112     L     112      3    4   36     3    3    5    6    8   13   21   28   33   37   41   43   48   51   55   59   62   63   66   68 
LCS_GDT     D     113     D     113      4    5   36     4    4    5    9   14   19   24   30   33   37   41   43   48   51   55   59   62   63   66   68 
LCS_GDT     T     114     T     114      4    5   36     4    4    4    5    7    8   18   23   28   33   38   42   48   51   55   59   62   63   66   68 
LCS_GDT     K     115     K     115      4   25   36     4    4    4    5    5    7   20   27   31   32   36   41   45   50   54   57   59   62   65   68 
LCS_GDT     C     116     C     116     22   26   36    12   21   22   23   25   26   28   30   34   37   41   43   48   51   55   59   62   63   66   68 
LCS_GDT     D     117     D     117     22   26   36    14   21   22   23   25   26   28   30   34   37   41   43   48   51   55   59   62   63   66   68 
LCS_GDT     A     118     A     118     22   26   36    14   21   22   23   25   26   28   30   34   37   41   43   48   51   55   59   62   63   66   68 
LCS_GDT     Y     119     Y     119     22   26   36    14   21   22   23   25   26   28   30   34   37   41   43   48   51   55   59   62   63   66   68 
LCS_GDT     L     120     L     120     22   26   36    14   21   22   23   25   26   28   30   34   37   41   43   48   51   55   59   62   63   66   68 
LCS_GDT     Q     121     Q     121     22   26   36    14   21   22   23   25   26   28   30   34   37   41   43   48   51   55   59   62   63   66   68 
LCS_GDT     Q     122     Q     122     22   26   36    14   21   22   23   25   26   28   30   34   37   41   43   48   51   55   59   62   63   66   68 
LCS_GDT     T     123     T     123     22   26   36    14   21   22   23   25   26   28   30   34   37   41   46   51   53   55   59   62   65   68   71 
LCS_GDT     R     124     R     124     22   26   36    14   21   22   23   25   26   28   30   34   37   45   47   50   53   55   59   62   65   69   74 
LCS_GDT     E     125     E     125     22   26   36    14   21   22   23   25   26   28   30   34   37   41   43   48   51   55   59   62   63   66   69 
LCS_GDT     L     126     L     126     22   26   36    14   21   22   23   26   28   31   34   38   42   45   47   52   53   56   60   66   69   72   74 
LCS_GDT     V     127     V     127     22   26   36    14   21   22   23   25   28   31   33   37   42   45   47   52   53   56   60   66   69   72   74 
LCS_GDT     I     128     I     128     22   26   36    14   21   22   23   25   26   28   30   34   37   41   47   48   53   56   59   65   69   72   74 
LCS_GDT     L     129     L     129     22   26   36    14   21   22   23   25   26   28   30   34   37   41   44   48   53   56   59   66   69   72   74 
LCS_GDT     E     130     E     130     22   26   36    14   21   22   23   25   26   28   30   34   37   41   44   48   53   56   60   66   69   72   74 
LCS_GDT     T     131     T     131     22   26   36    11   21   22   23   25   26   28   30   34   37   41   43   48   51   55   59   62   64   70   73 
LCS_GDT     I     132     I     132     22   26   36    14   21   22   23   25   26   28   30   34   37   41   43   48   51   55   59   62   63   66   68 
LCS_GDT     M     133     M     133     22   26   36    11   21   22   23   25   26   28   30   34   37   41   45   48   51   55   59   62   63   66   69 
LCS_GDT     L     134     L     134     22   26   36    11   21   22   23   25   26   28   30   34   37   41   43   48   51   55   59   62   63   66   68 
LCS_GDT     Q     135     Q     135     22   26   36    11   21   22   23   25   26   28   30   34   38   41   45   48   51   55   59   62   63   66   68 
LCS_GDT     T     136     T     136     22   26   35    11   21   22   23   25   26   28   30   37   41   44   46   48   51   55   59   62   63   66   68 
LCS_GDT     L     137     L     137     22   26   35    11   16   22   23   25   26   28   30   34   38   42   46   48   51   55   59   62   63   66   68 
LCS_GDT     G     138     G     138      3   26   35     3    3    6   12   17   21   27   29   34   37   41   43   48   51   55   59   62   63   66   68 
LCS_GDT     F     139     F     139      4   26   35     3    4    4    9   15   19   24   29   34   37   41   43   48   51   55   59   62   63   66   68 
LCS_GDT     E     140     E     140      4   26   35     3    4    9   21   24   26   28   30   34   37   41   43   48   51   55   59   62   63   66   68 
LCS_GDT     I     141     I     141      4   26   35     3    4    4    5   24   26   28   30   33   37   41   43   48   51   55   59   62   63   66   68 
LCS_GDT     T     142     T     142      4    6   35     3    4    4    6    9   21   27   30   33   37   40   43   48   49   55   59   62   63   66   68 
LCS_GDT     I     143     I     143      4    6   35     1    3    4    6    7    7    8   10   13   16   20   26   33   37   45   50   55   60   65   68 
LCS_AVERAGE  LCS_A:  17.20  (   9.89   13.07   28.64 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     19     21     22     23     26     28     31     34     38     42     45     47     52     53     56     60     66     69     72     74 
GDT PERCENT_CA  13.29  14.69  15.38  16.08  18.18  19.58  21.68  23.78  26.57  29.37  31.47  32.87  36.36  37.06  39.16  41.96  46.15  48.25  50.35  51.75
GDT RMS_LOCAL    0.21   0.27   0.73   0.80   1.31   1.59   1.88   2.54   2.85   2.91   3.32   3.48   4.19   4.22   4.88   5.23   5.74   5.88   6.03   6.21
GDT RMS_ALL_CA  17.38  17.32  22.13  21.95  17.13  17.17  17.17  17.30  17.30  17.27  17.33  17.35  17.52  17.53  17.69  17.83  18.02  17.99  17.93  17.96

#      Molecule1      Molecule2       DISTANCE
LGA    A       1      A       1         16.114
LGA    S       2      S       2         14.297
LGA    S       3      S       3         14.071
LGA    R       4      R       4          9.744
LGA    W       5      W       5         13.039
LGA    F       6      F       6         14.379
LGA    F       7      F       7         13.538
LGA    T       8      T       8         16.288
LGA    R       9      R       9         16.804
LGA    E      10      E      10         15.931
LGA    Q      11      Q      11         10.364
LGA    L      12      L      12         10.362
LGA    E      13      E      13         13.862
LGA    N      14      N      14         15.458
LGA    T      15      T      15         11.060
LGA    P      16      P      16         12.945
LGA    S      17      S      17         16.038
LGA    R      18      R      18         13.136
LGA    R      19      R      19         10.489
LGA    C      20      C      20         10.602
LGA    G      21      G      21          7.809
LGA    V      22      V      22          3.839
LGA    E      23      E      23          1.208
LGA    A      24      A      24          2.732
LGA    D      25      D      25          2.786
LGA    K      26      K      26          2.583
LGA    E      27      E      27          2.471
LGA    L      28      L      28          2.760
LGA    S      29      S      29          2.913
LGA    C      30      C      30          2.524
LGA    R      31      R      31          2.418
LGA    Q      32      Q      32          3.100
LGA    Q      33      Q      33          3.067
LGA    A      34      A      34          2.367
LGA    A      35      A      35          2.853
LGA    N      36      N      36          3.549
LGA    L      37      L      37          2.927
LGA    I      38      I      38          2.569
LGA    Q      39      Q      39          3.566
LGA    E      40      E      40          3.701
LGA    M      41      M      41          3.142
LGA    G      42      G      42          3.211
LGA    Q      43      Q      43          3.641
LGA    R      44      R      44          3.427
LGA    L      45      L      45          4.979
LGA    N      46      N      46          6.295
LGA    V      47      V      47          8.290
LGA    S      48      S      48         15.116
LGA    Q      49      Q      49         19.699
LGA    L      50      L      50         21.124
LGA    T      51      T      51         14.682
LGA    I      52      I      52         13.505
LGA    N      53      N      53         19.464
LGA    T      54      T      54         18.793
LGA    A      55      A      55         12.304
LGA    I      56      I      56         14.371
LGA    V      57      V      57         19.758
LGA    Y      58      Y      58         17.019
LGA    M      59      M      59         11.639
LGA    H      60      H      60         16.543
LGA    R      61      R      61         20.629
LGA    F      62      F      62         16.366
LGA    Y      63      Y      63         13.211
LGA    M      64      M      64         19.804
LGA    H      65      H      65         21.452
LGA    H      66      H      66         17.229
LGA    S      67      S      67         12.412
LGA    F      68      F      68          5.197
LGA    T      69      T      69          4.551
LGA    K      70      K      70          5.224
LGA    F      71      F      71          4.366
LGA    N      72      N      72          4.619
LGA    K      73      K      73          6.825
LGA    N      74      N      74          5.610
LGA    I      75      I      75          4.374
LGA    I      76      I      76          4.144
LGA    S      77      S      77          4.366
LGA    S      78      S      78          3.160
LGA    T      79      T      79          1.753
LGA    A      80      A      80          2.005
LGA    L      81      L      81          3.083
LGA    F      82      F      82          1.857
LGA    L      83      L      83          1.511
LGA    A      84      A      84          2.829
LGA    A      85      A      85          3.612
LGA    K      86      K      86          3.274
LGA    V      87      V      87          3.923
LGA    E      88      E      88          5.034
LGA    E      89      E      89          9.547
LGA    Q      90      Q      90         11.310
LGA    A      91      A      91         15.637
LGA    R      92      R      92         17.067
LGA    K      93      K      93         18.792
LGA    L      94      L      94         16.360
LGA    E      95      E      95         21.636
LGA    H      96      H      96         21.620
LGA    V      97      V      97         14.466
LGA    I      98      I      98         16.838
LGA    K      99      K      99         23.664
LGA    V     100      V     100         20.748
LGA    A     101      A     101         18.474
LGA    H     102      H     102         25.197
LGA    A     103      A     103         28.717
LGA    C     104      C     104         25.855
LGA    L     105      L     105         29.541
LGA    H     106      H     106         35.423
LGA    P     107      P     107         38.095
LGA    L     108      L     108         45.205
LGA    E     109      E     109         43.552
LGA    P     110      P     110         41.068
LGA    L     111      L     111         33.897
LGA    L     112      L     112         31.172
LGA    D     113      D     113         29.285
LGA    T     114      T     114         23.748
LGA    K     115      K     115         25.735
LGA    C     116      C     116         25.538
LGA    D     117      D     117         22.521
LGA    A     118      A     118         22.001
LGA    Y     119      Y     119         17.977
LGA    L     120      L     120         13.711
LGA    Q     121      Q     121         13.761
LGA    Q     122      Q     122         11.129
LGA    T     123      T     123          6.182
LGA    R     124      R     124          5.446
LGA    E     125      E     125          8.880
LGA    L     126      L     126          3.566
LGA    V     127      V     127          6.261
LGA    I     128      I     128         11.822
LGA    L     129      L     129         12.102
LGA    E     130      E     130         13.005
LGA    T     131      T     131         17.966
LGA    I     132      I     132         20.785
LGA    M     133      M     133         20.095
LGA    L     134      L     134         24.326
LGA    Q     135      Q     135         28.717
LGA    T     136      T     136         29.119
LGA    L     137      L     137         30.183
LGA    G     138      G     138         32.911
LGA    F     139      F     139         29.535
LGA    E     140      E     140         32.100
LGA    I     141      I     141         30.301
LGA    T     142      T     142         35.182
LGA    I     143      I     143         32.748

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  143  143    4.0     34    2.54    24.126    21.493     1.287

LGA_LOCAL      RMSD =  2.542  Number of atoms =   34  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 17.464  Number of atoms =  143 
Std_ALL_ATOMS  RMSD = 16.164  (standard rmsd on all 143 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.769263 * X  +   0.410318 * Y  +   0.489769 * Z  + -13.875487
  Y_new =   0.636781 * X  +   0.555211 * Y  +   0.535024 * Z  +  35.969929
  Z_new =  -0.052395 * X  +   0.723450 * Y  +  -0.688386 * Z  +  46.606754 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.331364   -0.810228  [ DEG:   133.5773    -46.4227 ]
  Theta =   0.052419    3.089174  [ DEG:     3.0034    176.9966 ]
  Phi   =   2.450140   -0.691452  [ DEG:   140.3827    -39.6173 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0338TS393_5-D1                               
REMARK     2: T0338_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0338TS393_5-D1.T0338_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  143  143   4.0   34   2.54  21.493    16.16
REMARK  ---------------------------------------------------------- 
MOLECULE T0338TS393_5-D1
PFRMAT TS
TARGET T0338
MODEL 5
PARENT N/A
ATOM      1  CA  ALA     1     -21.026  10.416  37.472  1.00 25.00           C
ATOM      2  CA  SER     2     -19.670  13.644  35.890  1.00 25.00           C
ATOM      3  CA  SER     3     -21.699  16.025  38.043  1.00 25.00           C
ATOM      4  CA  ARG     4     -19.398  16.742  41.016  1.00 25.00           C
ATOM      5  CA  TRP     5     -20.350  20.354  41.206  1.00 25.00           C
ATOM      6  CA  PHE     6     -21.715  20.224  44.699  1.00 25.00           C
ATOM      7  CA  PHE     7     -21.642  18.359  47.995  1.00 25.00           C
ATOM      8  CA  THR     8     -20.855  19.549  51.519  1.00 25.00           C
ATOM      9  CA  ARG     9     -21.247  17.457  54.685  1.00 25.00           C
ATOM     10  CA  GLU    10     -20.246  13.877  55.603  1.00 25.00           C
ATOM     11  CA  GLN    11     -16.996  14.250  53.612  1.00 25.00           C
ATOM     12  CA  LEU    12     -16.246  17.548  55.406  1.00 25.00           C
ATOM     13  CA  GLU    13     -16.877  15.878  58.794  1.00 25.00           C
ATOM     14  CA  ASN    14     -17.176  12.127  59.216  1.00 25.00           C
ATOM     15  CA  THR    15     -13.993  11.950  57.142  1.00 25.00           C
ATOM     16  CA  PRO    16     -11.193   9.619  56.178  1.00 25.00           C
ATOM     17  CA  SER    17      -9.266   6.455  56.965  1.00 25.00           C
ATOM     18  CA  ARG    18      -6.646   6.069  54.274  1.00 25.00           C
ATOM     19  CA  ARG    19      -3.602   8.401  54.092  1.00 25.00           C
ATOM     20  CA  CYS    20      -0.667  10.903  53.948  1.00 25.00           C
ATOM     21  CA  GLY    21       0.761  13.348  56.545  1.00 25.00           C
ATOM     22  CA  VAL    22       1.708  17.016  57.133  1.00 25.00           C
ATOM     23  CA  GLU    23       1.167  17.922  60.765  1.00 25.00           C
ATOM     24  CA  ALA    24      -2.566  18.641  60.512  1.00 25.00           C
ATOM     25  CA  ASP    25      -3.860  19.144  64.082  1.00 25.00           C
ATOM     26  CA  LYS    26      -2.912  22.851  63.930  1.00 25.00           C
ATOM     27  CA  GLU    27      -4.736  23.204  60.581  1.00 25.00           C
ATOM     28  CA  LEU    28      -7.839  21.517  62.064  1.00 25.00           C
ATOM     29  CA  SER    29      -7.725  23.894  65.065  1.00 25.00           C
ATOM     30  CA  CYS    30      -7.451  26.899  62.706  1.00 25.00           C
ATOM     31  CA  ARG    31     -10.447  25.623  60.692  1.00 25.00           C
ATOM     32  CA  GLN    32     -12.469  25.205  63.917  1.00 25.00           C
ATOM     33  CA  GLN    33     -11.558  28.770  64.980  1.00 25.00           C
ATOM     34  CA  ALA    34     -12.641  30.093  61.552  1.00 25.00           C
ATOM     35  CA  ALA    35     -15.964  28.212  61.848  1.00 25.00           C
ATOM     36  CA  ASN    36     -16.515  29.686  65.339  1.00 25.00           C
ATOM     37  CA  LEU    37     -15.789  33.199  63.998  1.00 25.00           C
ATOM     38  CA  ILE    38     -18.277  32.649  61.140  1.00 25.00           C
ATOM     39  CA  GLN    39     -20.928  31.471  63.640  1.00 25.00           C
ATOM     40  CA  GLU    40     -20.307  34.574  65.798  1.00 25.00           C
ATOM     41  CA  MET    41     -20.661  36.818  62.715  1.00 25.00           C
ATOM     42  CA  GLY    42     -23.947  35.079  61.795  1.00 25.00           C
ATOM     43  CA  GLN    43     -25.241  35.582  65.365  1.00 25.00           C
ATOM     44  CA  ARG    44     -24.293  39.290  65.213  1.00 25.00           C
ATOM     45  CA  LEU    45     -27.714  39.634  63.530  1.00 25.00           C
ATOM     46  CA  ASN    46     -30.347  41.769  61.815  1.00 25.00           C
ATOM     47  CA  VAL    47     -28.783  41.721  58.307  1.00 25.00           C
ATOM     48  CA  SER    48     -28.714  44.251  55.449  1.00 25.00           C
ATOM     49  CA  GLN    49     -25.792  44.356  53.021  1.00 25.00           C
ATOM     50  CA  LEU    50     -23.598  46.412  55.393  1.00 25.00           C
ATOM     51  CA  THR    51     -23.899  43.690  58.070  1.00 25.00           C
ATOM     52  CA  ILE    52     -22.916  41.023  55.503  1.00 25.00           C
ATOM     53  CA  ASN    53     -19.886  43.115  54.453  1.00 25.00           C
ATOM     54  CA  THR    54     -18.848  43.500  58.119  1.00 25.00           C
ATOM     55  CA  ALA    55     -19.167  39.718  58.631  1.00 25.00           C
ATOM     56  CA  ILE    56     -17.023  39.090  55.522  1.00 25.00           C
ATOM     57  CA  VAL    57     -14.377  41.534  56.824  1.00 25.00           C
ATOM     58  CA  TYR    58     -14.369  39.757  60.217  1.00 25.00           C
ATOM     59  CA  MET    59     -13.946  36.375  58.471  1.00 25.00           C
ATOM     60  CA  HIS    60     -11.028  37.770  56.419  1.00 25.00           C
ATOM     61  CA  ARG    61      -9.393  39.111  59.612  1.00 25.00           C
ATOM     62  CA  PHE    62      -9.806  35.693  61.290  1.00 25.00           C
ATOM     63  CA  TYR    63      -8.227  33.983  58.249  1.00 25.00           C
ATOM     64  CA  MET    64      -5.290  36.439  58.363  1.00 25.00           C
ATOM     65  CA  HIS    65      -4.818  35.739  62.099  1.00 25.00           C
ATOM     66  CA  HIS    66      -1.784  33.607  61.504  1.00 25.00           C
ATOM     67  CA  SER    67       0.688  32.084  59.105  1.00 25.00           C
ATOM     68  CA  PHE    68      -0.809  29.132  57.227  1.00 25.00           C
ATOM     69  CA  THR    69       1.965  26.542  56.960  1.00 25.00           C
ATOM     70  CA  LYS    70       1.188  25.858  53.350  1.00 25.00           C
ATOM     71  CA  PHE    71      -1.223  28.651  52.265  1.00 25.00           C
ATOM     72  CA  ASN    72      -4.710  27.108  52.630  1.00 25.00           C
ATOM     73  CA  LYS    73      -5.694  30.050  50.355  1.00 25.00           C
ATOM     74  CA  ASN    74      -6.580  33.119  52.467  1.00 25.00           C
ATOM     75  CA  ILE    75      -9.047  34.286  49.780  1.00 25.00           C
ATOM     76  CA  ILE    76     -10.647  30.808  49.703  1.00 25.00           C
ATOM     77  CA  SER    77     -10.969  30.845  53.519  1.00 25.00           C
ATOM     78  CA  SER    78     -12.601  34.307  53.372  1.00 25.00           C
ATOM     79  CA  THR    79     -15.056  33.063  50.710  1.00 25.00           C
ATOM     80  CA  ALA    80     -15.916  30.029  52.883  1.00 25.00           C
ATOM     81  CA  LEU    81     -16.506  32.322  55.894  1.00 25.00           C
ATOM     82  CA  PHE    82     -18.786  34.556  53.776  1.00 25.00           C
ATOM     83  CA  LEU    83     -20.748  31.483  52.604  1.00 25.00           C
ATOM     84  CA  ALA    84     -21.130  30.312  56.230  1.00 25.00           C
ATOM     85  CA  ALA    85     -22.379  33.787  57.246  1.00 25.00           C
ATOM     86  CA  LYS    86     -24.907  33.747  54.369  1.00 25.00           C
ATOM     87  CA  VAL    87     -26.124  30.282  55.455  1.00 25.00           C
ATOM     88  CA  GLU    88     -26.517  31.522  59.057  1.00 25.00           C
ATOM     89  CA  GLU    89     -26.215  28.545  61.359  1.00 25.00           C
ATOM     90  CA  GLN    90     -22.744  27.174  60.372  1.00 25.00           C
ATOM     91  CA  ALA    91     -19.775  24.752  60.193  1.00 25.00           C
ATOM     92  CA  ARG    92     -17.234  24.277  57.479  1.00 25.00           C
ATOM     93  CA  LYS    93     -14.122  25.765  55.776  1.00 25.00           C
ATOM     94  CA  LEU    94     -12.875  26.241  52.215  1.00 25.00           C
ATOM     95  CA  GLU    95     -13.962  23.564  49.701  1.00 25.00           C
ATOM     96  CA  HIS    96     -16.794  22.481  52.040  1.00 25.00           C
ATOM     97  CA  VAL    97     -17.925  26.122  52.399  1.00 25.00           C
ATOM     98  CA  ILE    98     -17.901  26.529  48.591  1.00 25.00           C
ATOM     99  CA  LYS    99     -19.980  23.335  48.211  1.00 25.00           C
ATOM    100  CA  VAL   100     -22.482  24.626  50.806  1.00 25.00           C
ATOM    101  CA  ALA   101     -22.735  27.961  48.940  1.00 25.00           C
ATOM    102  CA  HIS   102     -23.345  26.100  45.649  1.00 25.00           C
ATOM    103  CA  ALA   103     -26.081  24.000  47.314  1.00 25.00           C
ATOM    104  CA  CYS   104     -27.721  27.179  48.683  1.00 25.00           C
ATOM    105  CA  LEU   105     -31.439  27.393  49.460  1.00 25.00           C
ATOM    106  CA  HIS   106     -32.741  24.456  47.532  1.00 25.00           C
ATOM    107  CA  PRO   107     -34.282  26.351  44.640  1.00 25.00           C
ATOM    108  CA  LEU   108     -37.546  24.852  43.306  1.00 25.00           C
ATOM    109  CA  GLU   109     -37.785  28.166  41.418  1.00 25.00           C
ATOM    110  CA  PRO   110     -38.644  31.337  43.447  1.00 25.00           C
ATOM    111  CA  LEU   111     -35.227  32.549  44.625  1.00 25.00           C
ATOM    112  CA  LEU   112     -32.243  31.155  42.670  1.00 25.00           C
ATOM    113  CA  ASP   113     -31.413  34.666  41.384  1.00 25.00           C
ATOM    114  CA  THR   114     -31.588  36.040  44.955  1.00 25.00           C
ATOM    115  CA  LYS   115     -29.260  33.252  46.168  1.00 25.00           C
ATOM    116  CA  CYS   116     -26.797  34.046  43.345  1.00 25.00           C
ATOM    117  CA  ASP   117     -26.883  37.759  44.280  1.00 25.00           C
ATOM    118  CA  ALA   118     -26.219  36.876  47.948  1.00 25.00           C
ATOM    119  CA  TYR   119     -23.266  34.669  46.907  1.00 25.00           C
ATOM    120  CA  LEU   120     -21.858  37.518  44.770  1.00 25.00           C
ATOM    121  CA  GLN   121     -22.204  39.935  47.722  1.00 25.00           C
ATOM    122  CA  GLN   122     -20.394  37.446  50.002  1.00 25.00           C
ATOM    123  CA  THR   123     -17.581  37.093  47.428  1.00 25.00           C
ATOM    124  CA  ARG   124     -17.270  40.905  47.209  1.00 25.00           C
ATOM    125  CA  GLU   125     -17.094  41.133  51.029  1.00 25.00           C
ATOM    126  CA  LEU   126     -14.369  38.443  51.089  1.00 25.00           C
ATOM    127  CA  VAL   127     -12.395  40.348  48.418  1.00 25.00           C
ATOM    128  CA  ILE   128     -12.708  43.577  50.454  1.00 25.00           C
ATOM    129  CA  LEU   129     -11.477  41.750  53.587  1.00 25.00           C
ATOM    130  CA  GLU   130      -8.494  40.356  51.631  1.00 25.00           C
ATOM    131  CA  THR   131      -7.664  43.866  50.346  1.00 25.00           C
ATOM    132  CA  ILE   132      -7.839  45.241  53.917  1.00 25.00           C
ATOM    133  CA  MET   133      -5.511  42.453  55.130  1.00 25.00           C
ATOM    134  CA  LEU   134      -3.047  43.246  52.307  1.00 25.00           C
ATOM    135  CA  GLN   135      -3.134  46.959  53.242  1.00 25.00           C
ATOM    136  CA  THR   136      -2.470  46.075  56.909  1.00 25.00           C
ATOM    137  CA  LEU   137       0.483  43.870  55.869  1.00 25.00           C
ATOM    138  CA  GLY   138       0.546  41.599  58.923  1.00 25.00           C
ATOM    139  CA  PHE   139      -0.711  38.877  56.617  1.00 25.00           C
ATOM    140  CA  GLU   140       2.231  38.486  54.215  1.00 25.00           C
ATOM    141  CA  ILE   141       0.703  40.093  51.142  1.00 25.00           C
ATOM    142  CA  THR   142       3.168  38.981  48.444  1.00 25.00           C
ATOM    143  CA  ILE   143      -0.025  38.763  46.302  1.00 25.00           C
TER
END
