
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  104 (  104),  selected  104 , name T0341TS168_3-D2
# Molecule2: number of CA atoms  104 (  810),  selected  104 , name T0341_D2.pdb
# PARAMETERS: T0341TS168_3-D2.T0341_D2.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   104        75 - 178         3.42     3.42
  LCS_AVERAGE:    100.00

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    49       121 - 169         2.00     4.23
  LONGEST_CONTINUOUS_SEGMENT:    49       122 - 170         1.95     4.25
  LCS_AVERAGE:     31.83

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    16       124 - 139         0.97     5.23
  LONGEST_CONTINUOUS_SEGMENT:    16       155 - 170         0.99     4.49
  LCS_AVERAGE:      9.15

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  104
LCS_GDT     S      75     S      75     12   20  104    11   13   19   38   57   65   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     L      76     L      76     12   20  104    11   13   17   34   52   65   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     T      77     T      77     12   20  104    11   13   19   38   56   65   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     A      78     A      78     12   20  104    11   14   22   43   57   65   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     A      79     A      79     12   20  104    11   13   21   43   57   65   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     R      80     R      80     12   20  104    11   14   21   43   57   65   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     N      81     N      81     12   20  104    11   14   22   43   57   65   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     L      82     L      82     12   20  104    11   13   22   43   57   65   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     I      83     I      83     12   20  104    11   13   19   43   57   65   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     E      84     E      84     12   20  104    11   13   22   43   57   65   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     Q      85     Q      85     12   20  104    11   13   19   29   57   65   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     K      86     K      86     12   20  104     3    8   12   17   26   32   59   76   85   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     Q      87     Q      87      3   20  104     3    3    4   10   19   35   51   70   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     V      88     V      88      3   20  104     3    3    7   14   18   21   38   58   81   88   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     R      89     R      89      4   20  104     3    3    4   17   20   51   61   74   84   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     P      90     P      90      4   20  104     7   13   14   17   22   45   56   73   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     M      91     M      91      4   20  104     1    3    6   20   26   38   53   63   71   88   92  100  104  104  104  104  104  104  104  104 
LCS_GDT     L      92     L      92      4   20  104     0   12   16   25   34   46   60   73   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     L      93     L      93      5   20  104     3    4    8   25   50   65   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     L      94     L      94      5   20  104     3   10   18   32   54   65   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     D      95     D      95      5   14  104     3    7   18   30   47   65   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     D      96     D      96      5    9  104     3    4    8   21   41   61   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     R      97     R      97      5    9  104     3    7   19   38   52   65   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     A      98     A      98      5    8  104     3   14   22   43   57   65   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     L      99     L      99      5    8  104     4    5   18   29   47   65   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     P     100     P     100      5    7  104     4   13   14   17   18   29   38   52   64   82   93   99  104  104  104  104  104  104  104  104 
LCS_GDT     E     101     E     101      5    7  104     4    8   13   24   29   40   53   66   83   89   94  100  104  104  104  104  104  104  104  104 
LCS_GDT     F     102     F     102      5    7  104     4    9   21   40   56   65   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     T     103     T     103      5    7  104     3   12   17   34   47   57   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     G     104     G     104      3    7  104     3    4    9   24   32   48   57   73   85   90   95  100  104  104  104  104  104  104  104  104 
LCS_GDT     V     105     V     105      4    8  104     3    8   13   24   29   42   54   69   83   90   94  100  104  104  104  104  104  104  104  104 
LCS_GDT     Q     106     Q     106      4    8  104     3    6   12   24   29   43   54   69   83   90   94  100  104  104  104  104  104  104  104  104 
LCS_GDT     T     107     T     107      4    8  104     3    4    5    6   21   49   73   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     Q     108     Q     108      4    9  104     3    6   17   34   45   56   73   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     D     109     D     109      4    9  104     3    9   19   34   47   64   73   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     P     110     P     110      4    9  104     5   13   24   43   57   65   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     N     111     N     111      4    9  104     3    4   17   31   42   52   63   76   82   89   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     A     112     A     112      4    9  104     3    6    7   12   28   50   61   74   82   89   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     V     113     V     113      4   27  104     3    4    6   21   32   43   58   67   79   89   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     V     114     V     114      4   28  104     3   14   25   40   57   65   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     I     115     I     115      4   28  104     3   13   24   43   57   65   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     G     116     G     116      5   28  104     3    7   18   29   41   64   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     L     117     L     117      5   28  104     3   11   24   43   57   65   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     A     118     A     118      5   28  104     3    9   19   38   57   65   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     P     119     P     119      5   28  104     3   12   18   30   46   60   73   79   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     E     120     E     120      5   28  104     9   13   18   27   37   60   73   79   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     H     121     H     121      4   49  104     3    4    8   31   41   55   73   80   85   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     F     122     F     122      4   49  104     3    8   20   43   57   65   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     H     123     H     123     15   49  104     3    4   14   38   57   65   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     Y     124     Y     124     16   49  104     3   15   23   38   57   65   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     Q     125     Q     125     16   49  104     9   15   23   39   57   65   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     L     126     L     126     16   49  104    10   15   23   39   57   65   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     L     127     L     127     16   49  104    10   15   25   43   57   65   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     N     128     N     128     16   49  104    10   15   23   43   57   65   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     Q     129     Q     129     16   49  104    10   15   23   40   57   65   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     A     130     A     130     16   49  104    10   15   25   43   57   65   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     F     131     F     131     16   49  104    10   15   25   43   57   65   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     R     132     R     132     16   49  104    10   15   23   40   57   65   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     L     133     L     133     16   49  104    10   15   23   40   57   65   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     L     134     L     134     16   49  104    10   15   23   43   57   65   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     L     135     L     135     16   49  104    10   15   23   40   57   65   74   80   85   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     D     136     D     136     16   49  104     3   12   24   43   57   65   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     G     137     G     137     16   49  104     6   14   24   43   57   65   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     A     138     A     138     16   49  104     3   14   25   43   57   65   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     P     139     P     139     16   49  104     3    9   25   43   57   65   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     L     140     L     140      4   49  104     3    4   12   17   32   50   68   79   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     I     141     I     141      8   49  104     3    6   16   27   38   52   61   73   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     A     142     A     142      9   49  104     3   10   18   29   40   53   67   79   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     I     143     I     143      9   49  104     3    7   14   26   40   53   70   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     H     144     H     144      9   49  104     3    6   18   37   49   65   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     K     145     K     145      9   49  104     3   13   22   36   49   65   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     A     146     A     146      9   49  104    10   14   25   40   57   65   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     R     147     R     147      9   49  104     6   14   25   40   57   65   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     Y     148     Y     148      9   49  104     4    8   25   43   57   65   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     Y     149     Y     149      9   49  104     5   14   25   43   57   65   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     K     150     K     150      9   49  104     6   14   22   43   57   65   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     R     151     R     151      6   49  104     3    4   22   43   57   65   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     K     152     K     152      7   49  104     3   11   25   43   57   65   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     D     153     D     153      7   49  104     3    9   19   41   57   65   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     G     154     G     154      7   49  104     3   10   21   43   57   65   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     L     155     L     155     16   49  104     3    6   25   43   57   65   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     A     156     A     156     16   49  104     6   14   25   43   57   65   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     L     157     L     157     16   49  104     6   14   25   43   57   65   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     G     158     G     158     16   49  104     5   14   23   43   57   65   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     P     159     P     159     16   49  104     6   14   21   41   57   65   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     G     160     G     160     16   49  104    11   14   25   43   57   65   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     P     161     P     161     16   49  104    11   14   25   43   57   65   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     F     162     F     162     16   49  104    11   14   25   43   57   65   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     V     163     V     163     16   49  104    11   15   25   43   57   65   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     T     164     T     164     16   49  104    11   14   25   43   57   65   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     A     165     A     165     16   49  104    11   15   25   43   57   65   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     L     166     L     166     16   49  104    11   15   25   43   57   65   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     E     167     E     167     16   49  104    11   14   25   43   57   65   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     Y     168     Y     168     16   49  104    11   14   25   43   57   65   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     A     169     A     169     16   49  104    11   14   25   43   57   65   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     T     170     T     170     16   49  104    11   14   25   43   57   65   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     D     171     D     171      3   31  104     3    3    8   21   34   50   67   79   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     T     172     T     172      3   31  104     3   12   22   43   57   65   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     K     173     K     173      6   30  104     3    4    9   14   27   35   60   71   84   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     A     174     A     174      6   30  104     4    6    8   18   29   40   65   80   85   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     M     175     M     175      6   30  104     4    6    8   10   29   34   50   70   84   90   95  100  104  104  104  104  104  104  104  104 
LCS_GDT     V     176     V     176      6   30  104     4    7    8   24   30   53   66   80   85   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     V     177     V     177      6   30  104     4    7   10   27   43   61   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_GDT     G     178     G     178      6    6  104     4    7    9   25   37   54   74   80   86   90   97  100  104  104  104  104  104  104  104  104 
LCS_AVERAGE  LCS_A:  47.00  (   9.15   31.83  100.00 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     11     15     25     43     57     65     74     80     86     90     97    100    104    104    104    104    104    104    104    104 
GDT PERCENT_CA  10.58  14.42  24.04  41.35  54.81  62.50  71.15  76.92  82.69  86.54  93.27  96.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00
GDT RMS_LOCAL    0.13   0.61   1.12   1.54   1.77   1.97   2.25   2.45   2.69   2.78   3.05   3.21   3.42   3.42   3.42   3.42   3.42   3.42   3.42   3.42
GDT RMS_ALL_CA   7.66   4.97   4.23   3.51   3.62   3.52   3.46   3.44   3.46   3.45   3.47   3.43   3.42   3.42   3.42   3.42   3.42   3.42   3.42   3.42

#      Molecule1      Molecule2       DISTANCE
LGA    S      75      S      75          1.496
LGA    L      76      L      76          2.139
LGA    T      77      T      77          1.616
LGA    A      78      A      78          1.094
LGA    A      79      A      79          1.617
LGA    R      80      R      80          0.918
LGA    N      81      N      81          1.954
LGA    L      82      L      82          2.768
LGA    I      83      I      83          2.603
LGA    E      84      E      84          2.428
LGA    Q      85      Q      85          3.773
LGA    K      86      K      86          5.782
LGA    Q      87      Q      87          5.410
LGA    V      88      V      88          6.179
LGA    R      89      R      89          6.043
LGA    P      90      P      90          5.775
LGA    M      91      M      91          7.189
LGA    L      92      L      92          5.216
LGA    L      93      L      93          3.655
LGA    L      94      L      94          3.402
LGA    D      95      D      95          3.280
LGA    D      96      D      96          3.273
LGA    R      97      R      97          2.537
LGA    A      98      A      98          1.819
LGA    L      99      L      99          3.469
LGA    P     100      P     100          6.897
LGA    E     101      E     101          6.413
LGA    F     102      F     102          1.739
LGA    T     103      T     103          3.276
LGA    G     104      G     104          5.339
LGA    V     105      V     105          6.189
LGA    Q     106      Q     106          6.095
LGA    T     107      T     107          3.870
LGA    Q     108      Q     108          3.977
LGA    D     109      D     109          3.728
LGA    P     110      P     110          2.593
LGA    N     111      N     111          5.825
LGA    A     112      A     112          6.281
LGA    V     113      V     113          6.633
LGA    V     114      V     114          3.444
LGA    I     115      I     115          2.104
LGA    G     116      G     116          3.281
LGA    L     117      L     117          2.031
LGA    A     118      A     118          2.558
LGA    P     119      P     119          4.435
LGA    E     120      E     120          4.568
LGA    H     121      H     121          3.928
LGA    F     122      F     122          1.829
LGA    H     123      H     123          2.054
LGA    Y     124      Y     124          3.047
LGA    Q     125      Q     125          3.274
LGA    L     126      L     126          3.314
LGA    L     127      L     127          2.185
LGA    N     128      N     128          2.463
LGA    Q     129      Q     129          3.084
LGA    A     130      A     130          2.590
LGA    F     131      F     131          2.256
LGA    R     132      R     132          3.259
LGA    L     133      L     133          3.395
LGA    L     134      L     134          2.856
LGA    L     135      L     135          3.650
LGA    D     136      D     136          2.818
LGA    G     137      G     137          1.781
LGA    A     138      A     138          3.045
LGA    P     139      P     139          3.275
LGA    L     140      L     140          4.889
LGA    I     141      I     141          5.306
LGA    A     142      A     142          4.189
LGA    I     143      I     143          3.991
LGA    H     144      H     144          2.927
LGA    K     145      K     145          3.349
LGA    A     146      A     146          1.809
LGA    R     147      R     147          1.635
LGA    Y     148      Y     148          1.527
LGA    Y     149      Y     149          0.819
LGA    K     150      K     150          1.237
LGA    R     151      R     151          2.100
LGA    K     152      K     152          1.540
LGA    D     153      D     153          2.188
LGA    G     154      G     154          1.615
LGA    L     155      L     155          1.887
LGA    A     156      A     156          1.311
LGA    L     157      L     157          1.531
LGA    G     158      G     158          1.578
LGA    P     159      P     159          1.348
LGA    G     160      G     160          1.275
LGA    P     161      P     161          0.718
LGA    F     162      F     162          0.224
LGA    V     163      V     163          1.071
LGA    T     164      T     164          0.875
LGA    A     165      A     165          0.640
LGA    L     166      L     166          1.392
LGA    E     167      E     167          1.245
LGA    Y     168      Y     168          0.693
LGA    A     169      A     169          1.893
LGA    T     170      T     170          2.591
LGA    D     171      D     171          5.039
LGA    T     172      T     172          2.987
LGA    K     173      K     173          5.356
LGA    A     174      A     174          4.054
LGA    M     175      M     175          5.056
LGA    V     176      V     176          3.888
LGA    V     177      V     177          3.004
LGA    G     178      G     178          3.266

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  104  104    4.0     80    2.45    58.173    56.461     3.132

LGA_LOCAL      RMSD =  2.455  Number of atoms =   80  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  3.515  Number of atoms =  104 
Std_ALL_ATOMS  RMSD =  3.415  (standard rmsd on all 104 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.928108 * X  +  -0.303002 * Y  +   0.216347 * Z  +  27.881893
  Y_new =  -0.365190 * X  +  -0.627768 * Y  +   0.687418 * Z  +  32.902523
  Z_new =  -0.072473 * X  +  -0.717006 * Y  +  -0.693289 * Z  +  85.224159 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -2.339379    0.802214  [ DEG:  -134.0365     45.9635 ]
  Theta =   0.072537    3.069056  [ DEG:     4.1560    175.8440 ]
  Phi   =  -0.374872    2.766721  [ DEG:   -21.4786    158.5214 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0341TS168_3-D2                               
REMARK     2: T0341_D2.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0341TS168_3-D2.T0341_D2.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  104  104   4.0   80   2.45  56.461     3.42
REMARK  ---------------------------------------------------------- 
MOLECULE T0341TS168_3-D2
PFRMAT TS
TARGET T0341
MODEL 3
PARENT N/A
ATOM     75  CA  SER    75      22.894  30.694  86.109  1.00 25.00           C
ATOM     76  CA  LEU    76      20.192  28.266  84.896  1.00 25.00           C
ATOM     77  CA  THR    77      18.227  28.794  88.141  1.00 25.00           C
ATOM     78  CA  ALA    78      18.492  32.591  87.713  1.00 25.00           C
ATOM     79  CA  ALA    79      17.247  32.296  84.103  1.00 25.00           C
ATOM     80  CA  ARG    80      14.295  30.153  85.271  1.00 25.00           C
ATOM     81  CA  ASN    81      13.448  32.744  87.962  1.00 25.00           C
ATOM     82  CA  LEU    82      13.575  35.538  85.346  1.00 25.00           C
ATOM     83  CA  ILE    83      11.260  33.528  83.051  1.00 25.00           C
ATOM     84  CA  GLU    84       8.818  32.984  85.950  1.00 25.00           C
ATOM     85  CA  GLN    85       8.863  36.735  86.725  1.00 25.00           C
ATOM     86  CA  LYS    86       6.560  37.235  83.698  1.00 25.00           C
ATOM     87  CA  GLN    87       4.655  38.330  80.562  1.00 25.00           C
ATOM     88  CA  VAL    88       4.446  35.161  78.462  1.00 25.00           C
ATOM     89  CA  ARG    89       7.839  33.459  78.038  1.00 25.00           C
ATOM     90  CA  PRO    90      10.998  32.256  76.172  1.00 25.00           C
ATOM     91  CA  MET    91      14.471  31.171  75.011  1.00 25.00           C
ATOM     92  CA  LEU    92      16.379  27.956  75.810  1.00 25.00           C
ATOM     93  CA  LEU    93      18.350  25.028  77.227  1.00 25.00           C
ATOM     94  CA  LEU    94      20.847  24.546  80.056  1.00 25.00           C
ATOM     95  CA  ASP    95      22.951  21.519  80.861  1.00 25.00           C
ATOM     96  CA  ASP    96      22.277  17.821  80.885  1.00 25.00           C
ATOM     97  CA  ARG    97      20.473  17.752  84.288  1.00 25.00           C
ATOM     98  CA  ALA    98      18.808  20.032  86.876  1.00 25.00           C
ATOM     99  CA  LEU    99      17.903  22.535  84.122  1.00 25.00           C
ATOM    100  CA  PRO   100      16.410  19.711  82.010  1.00 25.00           C
ATOM    101  CA  GLU   101      14.361  18.512  85.016  1.00 25.00           C
ATOM    102  CA  PHE   102      13.092  22.078  85.603  1.00 25.00           C
ATOM    103  CA  THR   103       9.562  22.462  84.361  1.00 25.00           C
ATOM    104  CA  GLY   104       8.047  19.214  83.097  1.00 25.00           C
ATOM    105  CA  VAL   105       8.603  20.352  79.495  1.00 25.00           C
ATOM    106  CA  GLN   106       7.485  19.988  75.949  1.00 25.00           C
ATOM    107  CA  THR   107       6.394  23.474  74.981  1.00 25.00           C
ATOM    108  CA  GLN   108       7.332  23.320  71.321  1.00 25.00           C
ATOM    109  CA  ASP   109       7.795  27.067  70.644  1.00 25.00           C
ATOM    110  CA  PRO   110       9.865  27.746  73.748  1.00 25.00           C
ATOM    111  CA  ASN   111      11.358  27.358  77.224  1.00 25.00           C
ATOM    112  CA  ALA   112      13.065  29.485  79.798  1.00 25.00           C
ATOM    113  CA  VAL   113      16.416  31.175  79.643  1.00 25.00           C
ATOM    114  CA  VAL   114      19.774  29.434  80.031  1.00 25.00           C
ATOM    115  CA  ILE   115      22.049  28.438  77.153  1.00 25.00           C
ATOM    116  CA  GLY   116      25.673  27.305  77.515  1.00 25.00           C
ATOM    117  CA  LEU   117      27.030  24.520  79.622  1.00 25.00           C
ATOM    118  CA  ALA   118      26.765  21.651  77.153  1.00 25.00           C
ATOM    119  CA  PRO   119      29.176  19.922  79.592  1.00 25.00           C
ATOM    120  CA  GLU   120      29.005  17.066  77.020  1.00 25.00           C
ATOM    121  CA  HIS   121      25.759  15.218  76.310  1.00 25.00           C
ATOM    122  CA  PHE   122      25.718  17.457  73.240  1.00 25.00           C
ATOM    123  CA  HIS   123      26.322  15.376  70.149  1.00 25.00           C
ATOM    124  CA  TYR   124      25.383  18.529  68.257  1.00 25.00           C
ATOM    125  CA  GLN   125      21.758  17.340  68.590  1.00 25.00           C
ATOM    126  CA  LEU   126      21.312  19.495  71.724  1.00 25.00           C
ATOM    127  CA  LEU   127      22.746  22.526  69.873  1.00 25.00           C
ATOM    128  CA  ASN   128      20.347  21.908  66.952  1.00 25.00           C
ATOM    129  CA  GLN   129      17.401  21.682  69.388  1.00 25.00           C
ATOM    130  CA  ALA   130      18.477  24.968  71.034  1.00 25.00           C
ATOM    131  CA  PHE   131      18.704  26.643  67.597  1.00 25.00           C
ATOM    132  CA  ARG   132      15.202  25.365  66.716  1.00 25.00           C
ATOM    133  CA  LEU   133      13.846  26.725  70.029  1.00 25.00           C
ATOM    134  CA  LEU   134      15.472  30.121  69.331  1.00 25.00           C
ATOM    135  CA  LEU   135      13.918  30.171  65.830  1.00 25.00           C
ATOM    136  CA  ASP   136      10.590  31.970  66.222  1.00 25.00           C
ATOM    137  CA  GLY   137      12.470  34.677  68.093  1.00 25.00           C
ATOM    138  CA  ALA   138      13.861  34.857  71.618  1.00 25.00           C
ATOM    139  CA  PRO   139      15.609  36.114  74.808  1.00 25.00           C
ATOM    140  CA  LEU   140      19.206  37.057  74.013  1.00 25.00           C
ATOM    141  CA  ILE   141      22.842  35.984  74.437  1.00 25.00           C
ATOM    142  CA  ALA   142      25.673  33.605  75.240  1.00 25.00           C
ATOM    143  CA  ILE   143      26.551  31.585  78.375  1.00 25.00           C
ATOM    144  CA  HIS   144      30.301  31.116  78.805  1.00 25.00           C
ATOM    145  CA  LYS   145      33.893  32.049  78.020  1.00 25.00           C
ATOM    146  CA  ALA   146      35.372  28.812  79.172  1.00 25.00           C
ATOM    147  CA  ARG   147      37.117  27.143  76.250  1.00 25.00           C
ATOM    148  CA  TYR   148      38.418  24.756  78.858  1.00 25.00           C
ATOM    149  CA  TYR   149      36.517  23.891  82.111  1.00 25.00           C
ATOM    150  CA  LYS   150      38.437  21.069  83.716  1.00 25.00           C
ATOM    151  CA  ARG   151      38.385  17.740  85.436  1.00 25.00           C
ATOM    152  CA  LYS   152      40.901  15.055  84.305  1.00 25.00           C
ATOM    153  CA  ASP   153      41.168  15.246  80.502  1.00 25.00           C
ATOM    154  CA  GLY   154      42.403  18.869  80.872  1.00 25.00           C
ATOM    155  CA  LEU   155      40.423  20.031  77.894  1.00 25.00           C
ATOM    156  CA  ALA   156      36.794  19.304  78.543  1.00 25.00           C
ATOM    157  CA  LEU   157      34.513  21.967  76.969  1.00 25.00           C
ATOM    158  CA  GLY   158      32.360  24.132  79.254  1.00 25.00           C
ATOM    159  CA  PRO   159      30.496  24.949  76.039  1.00 25.00           C
ATOM    160  CA  GLY   160      32.338  28.137  74.984  1.00 25.00           C
ATOM    161  CA  PRO   161      32.663  26.797  71.412  1.00 25.00           C
ATOM    162  CA  PHE   162      28.921  25.983  71.350  1.00 25.00           C
ATOM    163  CA  VAL   163      28.107  29.514  72.587  1.00 25.00           C
ATOM    164  CA  THR   164      30.343  31.010  69.862  1.00 25.00           C
ATOM    165  CA  ALA   165      28.592  28.868  67.214  1.00 25.00           C
ATOM    166  CA  LEU   166      25.177  30.025  68.502  1.00 25.00           C
ATOM    167  CA  GLU   167      26.326  33.675  68.345  1.00 25.00           C
ATOM    168  CA  TYR   168      27.555  33.160  64.755  1.00 25.00           C
ATOM    169  CA  ALA   169      24.190  31.597  63.802  1.00 25.00           C
ATOM    170  CA  THR   170      22.341  34.564  65.366  1.00 25.00           C
ATOM    171  CA  ASP   171      19.896  37.442  65.657  1.00 25.00           C
ATOM    172  CA  THR   172      21.030  37.763  69.279  1.00 25.00           C
ATOM    173  CA  LYS   173      19.663  34.293  69.769  1.00 25.00           C
ATOM    174  CA  ALA   174      21.536  31.834  71.889  1.00 25.00           C
ATOM    175  CA  MET   175      19.313  32.707  74.841  1.00 25.00           C
ATOM    176  CA  VAL   176      21.290  33.803  77.953  1.00 25.00           C
ATOM    177  CA  VAL   177      20.438  34.150  81.628  1.00 25.00           C
ATOM    178  CA  GLY   178      24.095  33.278  82.263  1.00 25.00           C
TER
END
