
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  104 (  104),  selected  104 , name T0341TS393_1-D2
# Molecule2: number of CA atoms  104 (  810),  selected  104 , name T0341_D2.pdb
# PARAMETERS: T0341TS393_1-D2.T0341_D2.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   104        75 - 178         3.58     3.58
  LCS_AVERAGE:    100.00

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    30       114 - 143         1.98     4.84
  LONGEST_CONTINUOUS_SEGMENT:    30       149 - 178         1.96     3.93
  LCS_AVERAGE:     22.06

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    17       123 - 139         0.95     5.52
  LONGEST_CONTINUOUS_SEGMENT:    17       124 - 140         0.78     5.25
  LCS_AVERAGE:      9.11

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  104
LCS_GDT     S      75     S      75     12   16  104    11   18   27   35   51   63   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     L      76     L      76     12   16  104    11   18   27   35   48   63   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     T      77     T      77     12   16  104    11   18   27   35   51   63   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     A      78     A      78     12   16  104    11   18   27   35   51   63   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     A      79     A      79     12   16  104    11   18   27   35   51   63   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     R      80     R      80     12   16  104    11   18   27   35   51   63   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     N      81     N      81     12   16  104    11   18   27   35   51   63   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     L      82     L      82     12   16  104    11   18   27   35   51   63   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     I      83     I      83     12   16  104    11   18   27   35   51   63   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     E      84     E      84     12   16  104    11   18   27   35   51   63   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     Q      85     Q      85     12   16  104    11   18   27   35   51   63   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     K      86     K      86     12   16  104     3    3    8   18   21   26   50   80   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     Q      87     Q      87      3   16  104     3    3    3   12   21   44   59   76   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     V      88     V      88      4   16  104     3    3    5   12   14   18   25   44   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     R      89     R      89      5   16  104     2    4    6   11   25   41   53   78   84   91   94  100  101  104  104  104  104  104  104  104 
LCS_GDT     P      90     P      90      5   16  104     1    4    8   18   25   41   55   79   86   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     M      91     M      91      5    8  104     3    4    5   18   22   33   43   63   74   85   92   95  101  104  104  104  104  104  104  104 
LCS_GDT     L      92     L      92      5    8  104     3    6   13   18   28   43   55   71   84   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     L      93     L      93      5    8  104     3    6   13   18   27   43   69   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     L      94     L      94      4    8  104    11   13   19   33   46   62   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     D      95     D      95      4    8  104     3    5   13   18   24   50   71   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     D      96     D      96      4    8  104     3    4    7   11   21   41   68   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     R      97     R      97      4    8  104     3    4   13   31   46   60   72   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     A      98     A      98      5    8  104     3   12   27   35   51   63   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     L      99     L      99      5    8  104     4    5   10   18   22   53   69   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     P     100     P     100      5    8  104     4    5    8    8   14   24   37   51   67   84   92   98  101  104  104  104  104  104  104  104 
LCS_GDT     E     101     E     101      5    8  104     4    5    5   10   19   27   52   64   76   88   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     F     102     F     102      5    8  104     4   10   16   29   46   61   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     T     103     T     103      5    8  104     3    4   13   26   46   59   72   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     G     104     G     104      4    8  104     3    4    5   13   19   36   52   64   76   86   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     V     105     V     105      4    7  104     3    4    5   13   19   36   52   64   76   86   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     Q     106     Q     106      4    7  104     3    4    5   16   24   46   58   74   85   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     T     107     T     107      4    7  104     3    4    5    9   15   23   43   65   82   90   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     Q     108     Q     108      4   10  104     1    4    8   14   27   43   61   70   82   90   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     D     109     D     109      6   10  104     3    4    6   24   50   63   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     P     110     P     110      6   10  104     3    5   19   34   51   63   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     N     111     N     111      6   10  104     4    5   14   24   40   49   55   66   79   87   92   96  101  104  104  104  104  104  104  104 
LCS_GDT     A     112     A     112      6   10  104     4    4   11   20   30   43   51   59   65   77   89   94  101  104  104  104  104  104  104  104 
LCS_GDT     V     113     V     113      6   10  104     4    4   12   17   30   44   56   66   81   88   94  100  101  104  104  104  104  104  104  104 
LCS_GDT     V     114     V     114      6   30  104     4    7   18   33   46   59   73   81   86   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     I     115     I     115      5   30  104     4   11   25   34   51   63   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     G     116     G     116      5   30  104     4   13   25   34   46   63   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     L     117     L     117      5   30  104     4   13   25   34   46   60   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     A     118     A     118      5   30  104     4   13   25   34   46   60   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     P     119     P     119      5   30  104     4    4    6   12   21   45   71   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     E     120     E     120      5   30  104     4   12   15   25   36   45   54   73   83   89   94  100  101  104  104  104  104  104  104  104 
LCS_GDT     H     121     H     121      5   30  104     4    4    5    8   29   44   53   64   80   87   94  100  101  104  104  104  104  104  104  104 
LCS_GDT     F     122     F     122      5   30  104     3    4    7   10   39   61   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     H     123     H     123     17   30  104     3    4   23   34   51   63   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     Y     124     Y     124     17   30  104     3   16   25   34   46   62   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     Q     125     Q     125     17   30  104     9   16   25   34   46   59   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     L     126     L     126     17   30  104    10   16   25   34   45   58   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     L     127     L     127     17   30  104    10   16   25   34   51   63   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     N     128     N     128     17   30  104    10   16   25   34   51   63   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     Q     129     Q     129     17   30  104    10   16   25   34   46   63   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     A     130     A     130     17   30  104    10   16   25   34   51   63   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     F     131     F     131     17   30  104    10   16   26   35   51   63   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     R     132     R     132     17   30  104    10   16   25   34   51   63   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     L     133     L     133     17   30  104    10   16   25   34   51   63   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     L     134     L     134     17   30  104    10   16   26   35   51   63   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     L     135     L     135     17   30  104    10   16   26   35   51   63   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     D     136     D     136     17   30  104     8   16   26   35   49   63   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     G     137     G     137     17   30  104     3   10   23   34   46   62   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     A     138     A     138     17   30  104     5   16   26   35   51   63   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     P     139     P     139     17   30  104     6   16   26   35   51   63   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     L     140     L     140     17   30  104     3   13   26   34   51   63   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     I     141     I     141      4   30  104     3    5   20   33   51   63   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     A     142     A     142      5   30  104     4    5   17   32   51   63   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     I     143     I     143      5   30  104     4    6   19   33   51   63   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     H     144     H     144      5   27  104     4    9   20   34   51   63   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     K     145     K     145      5   27  104     4    9   20   34   51   63   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     A     146     A     146      5   27  104    13   15   20   34   51   63   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     R     147     R     147      3   27  104     3    3    8   21   48   63   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     Y     148     Y     148      3   29  104     3    6   15   27   43   60   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     Y     149     Y     149      4   30  104     3    3   15   30   50   63   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     K     150     K     150      4   30  104     3    3   27   33   51   63   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     R     151     R     151      4   30  104     1    3    9   21   42   63   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     K     152     K     152      4   30  104     3   10   26   34   51   63   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     D     153     D     153      4   30  104     5   14   26   35   49   62   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     G     154     G     154      4   30  104     4   14   26   35   51   63   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     L     155     L     155     16   30  104     3   18   27   33   46   63   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     A     156     A     156     16   30  104     3   18   27   33   50   63   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     L     157     L     157     16   30  104     3   18   27   35   51   63   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     G     158     G     158     16   30  104     4   16   26   35   51   63   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     P     159     P     159     16   30  104    13   16   27   35   51   63   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     G     160     G     160     16   30  104    13   16   27   35   51   63   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     P     161     P     161     16   30  104    13   18   27   35   51   63   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     F     162     F     162     16   30  104    13   18   27   35   51   63   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     V     163     V     163     16   30  104    13   18   27   35   51   63   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     T     164     T     164     16   30  104    13   18   27   35   51   63   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     A     165     A     165     16   30  104    13   17   27   35   51   63   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     L     166     L     166     16   30  104    13   16   27   35   51   63   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     E     167     E     167     16   30  104    13   18   27   35   51   63   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     Y     168     Y     168     16   30  104    13   16   26   35   51   63   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     A     169     A     169     16   30  104    13   16   26   35   48   63   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     T     170     T     170     16   30  104    13   16   26   35   50   63   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     D     171     D     171      5   30  104     3    4   12   28   42   49   63   77   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     T     172     T     172      5   30  104     3    7   12   28   42   48   64   77   87   91   94  100  101  104  104  104  104  104  104  104 
LCS_GDT     K     173     K     173      6   30  104     3    8   19   30   44   62   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     A     174     A     174      6   30  104     5   16   27   35   51   63   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     M     175     M     175      6   30  104     4   14   26   35   51   63   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     V     176     V     176      6   30  104     4   10   27   35   51   63   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     V     177     V     177      6   30  104     4    9   20   33   51   63   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_GDT     G     178     G     178      6   30  104     4    5   20   30   51   63   73   81   87   91   95  100  101  104  104  104  104  104  104  104 
LCS_AVERAGE  LCS_A:  43.72  (   9.11   22.06  100.00 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     13     18     27     35     51     63     73     81     87     91     95    100    101    104    104    104    104    104    104    104 
GDT PERCENT_CA  12.50  17.31  25.96  33.65  49.04  60.58  70.19  77.88  83.65  87.50  91.35  96.15  97.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00
GDT RMS_LOCAL    0.33   0.57   0.94   1.37   1.94   2.12   2.33   2.55   2.74   2.87   3.16   3.35   3.40   3.58   3.58   3.58   3.58   3.58   3.58   3.58
GDT RMS_ALL_CA   6.57   4.44   4.15   3.78   3.68   3.73   3.69   3.63   3.64   3.66   3.59   3.58   3.58   3.58   3.58   3.58   3.58   3.58   3.58   3.58

#      Molecule1      Molecule2       DISTANCE
LGA    S      75      S      75          1.851
LGA    L      76      L      76          2.282
LGA    T      77      T      77          1.940
LGA    A      78      A      78          1.448
LGA    A      79      A      79          1.975
LGA    R      80      R      80          2.306
LGA    N      81      N      81          1.794
LGA    L      82      L      82          1.809
LGA    I      83      I      83          2.529
LGA    E      84      E      84          2.559
LGA    Q      85      Q      85          2.439
LGA    K      86      K      86          4.268
LGA    Q      87      Q      87          4.771
LGA    V      88      V      88          5.009
LGA    R      89      R      89          5.775
LGA    P      90      P      90          5.079
LGA    M      91      M      91          7.027
LGA    L      92      L      92          5.219
LGA    L      93      L      93          3.837
LGA    L      94      L      94          2.928
LGA    D      95      D      95          3.622
LGA    D      96      D      96          3.976
LGA    R      97      R      97          2.808
LGA    A      98      A      98          1.009
LGA    L      99      L      99          3.891
LGA    P     100      P     100          7.416
LGA    E     101      E     101          6.444
LGA    F     102      F     102          2.325
LGA    T     103      T     103          3.534
LGA    G     104      G     104          7.048
LGA    V     105      V     105          6.530
LGA    Q     106      Q     106          4.982
LGA    T     107      T     107          5.537
LGA    Q     108      Q     108          5.941
LGA    D     109      D     109          3.217
LGA    P     110      P     110          2.676
LGA    N     111      N     111          6.760
LGA    A     112      A     112          7.562
LGA    V     113      V     113          6.146
LGA    V     114      V     114          4.311
LGA    I     115      I     115          2.821
LGA    G     116      G     116          3.142
LGA    L     117      L     117          3.467
LGA    A     118      A     118          3.735
LGA    P     119      P     119          3.935
LGA    E     120      E     120          5.668
LGA    H     121      H     121          6.071
LGA    F     122      F     122          4.288
LGA    H     123      H     123          2.816
LGA    Y     124      Y     124          3.329
LGA    Q     125      Q     125          3.986
LGA    L     126      L     126          3.841
LGA    L     127      L     127          1.995
LGA    N     128      N     128          2.491
LGA    Q     129      Q     129          3.271
LGA    A     130      A     130          2.278
LGA    F     131      F     131          1.268
LGA    R     132      R     132          2.837
LGA    L     133      L     133          2.583
LGA    L     134      L     134          1.121
LGA    L     135      L     135          2.473
LGA    D     136      D     136          2.722
LGA    G     137      G     137          3.406
LGA    A     138      A     138          1.272
LGA    P     139      P     139          0.948
LGA    L     140      L     140          1.790
LGA    I     141      I     141          2.564
LGA    A     142      A     142          3.017
LGA    I     143      I     143          2.983
LGA    H     144      H     144          2.760
LGA    K     145      K     145          2.624
LGA    A     146      A     146          3.415
LGA    R     147      R     147          3.511
LGA    Y     148      Y     148          2.908
LGA    Y     149      Y     149          2.564
LGA    K     150      K     150          2.619
LGA    R     151      R     151          3.332
LGA    K     152      K     152          1.767
LGA    D     153      D     153          1.871
LGA    G     154      G     154          1.561
LGA    L     155      L     155          3.988
LGA    A     156      A     156          3.532
LGA    L     157      L     157          2.003
LGA    G     158      G     158          1.952
LGA    P     159      P     159          1.015
LGA    G     160      G     160          1.422
LGA    P     161      P     161          1.982
LGA    F     162      F     162          1.504
LGA    V     163      V     163          0.852
LGA    T     164      T     164          1.699
LGA    A     165      A     165          2.097
LGA    L     166      L     166          1.447
LGA    E     167      E     167          1.131
LGA    Y     168      Y     168          2.728
LGA    A     169      A     169          3.138
LGA    T     170      T     170          1.814
LGA    D     171      D     171          5.021
LGA    T     172      T     172          5.061
LGA    K     173      K     173          3.160
LGA    A     174      A     174          0.470
LGA    M     175      M     175          1.230
LGA    V     176      V     176          1.259
LGA    V     177      V     177          2.325
LGA    G     178      G     178          2.857

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  104  104    4.0     81    2.55    57.212    53.271     3.053

LGA_LOCAL      RMSD =  2.553  Number of atoms =   81  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  3.579  Number of atoms =  104 
Std_ALL_ATOMS  RMSD =  3.579  (standard rmsd on all 104 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.793943 * X  +  -0.271835 * Y  +   0.543838 * Z  +  28.002617
  Y_new =  -0.606577 * X  +  -0.293150 * Y  +   0.739005 * Z  +  31.656967
  Z_new =  -0.041461 * X  +  -0.916607 * Y  +  -0.397633 * Z  +  85.584625 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -1.980105    1.161488  [ DEG:  -113.4516     66.5484 ]
  Theta =   0.041473    3.100119  [ DEG:     2.3762    177.6237 ]
  Phi   =  -0.652404    2.489188  [ DEG:   -37.3800    142.6200 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0341TS393_1-D2                               
REMARK     2: T0341_D2.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0341TS393_1-D2.T0341_D2.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  104  104   4.0   81   2.55  53.271     3.58
REMARK  ---------------------------------------------------------- 
MOLECULE T0341TS393_1-D2
PFRMAT TS
TARGET T0341
MODEL 1
PARENT N/A
ATOM     75  CA  SER    75      22.659  30.457  85.832  1.00 25.00           C
ATOM     76  CA  LEU    76      19.521  28.385  85.114  1.00 25.00           C
ATOM     77  CA  THR    77      17.551  30.430  87.683  1.00 25.00           C
ATOM     78  CA  ALA    78      18.774  33.681  86.069  1.00 25.00           C
ATOM     79  CA  ALA    79      17.719  32.394  82.620  1.00 25.00           C
ATOM     80  CA  ARG    80      14.262  31.477  83.993  1.00 25.00           C
ATOM     81  CA  ASN    81      13.918  34.971  85.525  1.00 25.00           C
ATOM     82  CA  LEU    82      14.894  36.561  82.180  1.00 25.00           C
ATOM     83  CA  ILE    83      12.300  34.404  80.369  1.00 25.00           C
ATOM     84  CA  GLU    84       9.625  35.449  82.902  1.00 25.00           C
ATOM     85  CA  GLN    85      10.548  39.131  82.393  1.00 25.00           C
ATOM     86  CA  LYS    86       7.425  39.260  80.276  1.00 25.00           C
ATOM     87  CA  GLN    87       4.915  37.413  78.010  1.00 25.00           C
ATOM     88  CA  VAL    88       5.035  33.705  78.822  1.00 25.00           C
ATOM     89  CA  ARG    89       8.279  33.382  76.854  1.00 25.00           C
ATOM     90  CA  PRO    90      11.744  31.748  76.420  1.00 25.00           C
ATOM     91  CA  MET    91      15.359  30.666  76.946  1.00 25.00           C
ATOM     92  CA  LEU    92      16.923  27.708  75.175  1.00 25.00           C
ATOM     93  CA  LEU    93      20.227  25.863  75.380  1.00 25.00           C
ATOM     94  CA  LEU    94      20.426  22.756  77.545  1.00 25.00           C
ATOM     95  CA  ASP    95      23.213  21.411  79.718  1.00 25.00           C
ATOM     96  CA  ASP    96      23.230  17.743  80.764  1.00 25.00           C
ATOM     97  CA  ARG    97      20.900  17.327  83.706  1.00 25.00           C
ATOM     98  CA  ALA    98      19.511  20.294  85.690  1.00 25.00           C
ATOM     99  CA  LEU    99      18.106  21.820  82.470  1.00 25.00           C
ATOM    100  CA  PRO   100      16.465  18.479  81.573  1.00 25.00           C
ATOM    101  CA  GLU   101      14.922  18.268  85.071  1.00 25.00           C
ATOM    102  CA  PHE   102      13.582  21.839  84.722  1.00 25.00           C
ATOM    103  CA  THR   103       9.989  20.689  83.945  1.00 25.00           C
ATOM    104  CA  GLY   104       8.246  18.073  81.827  1.00 25.00           C
ATOM    105  CA  VAL   105       9.286  20.412  78.963  1.00 25.00           C
ATOM    106  CA  GLN   106       6.689  21.293  76.269  1.00 25.00           C
ATOM    107  CA  THR   107       7.362  21.639  72.574  1.00 25.00           C
ATOM    108  CA  GLN   108       7.675  23.834  69.449  1.00 25.00           C
ATOM    109  CA  ASP   109       7.923  26.579  72.023  1.00 25.00           C
ATOM    110  CA  PRO   110      10.925  27.144  74.262  1.00 25.00           C
ATOM    111  CA  ASN   111      12.058  26.875  77.900  1.00 25.00           C
ATOM    112  CA  ALA   112      15.013  26.752  80.343  1.00 25.00           C
ATOM    113  CA  VAL   113      18.297  28.649  79.813  1.00 25.00           C
ATOM    114  CA  VAL   114      21.649  26.929  80.362  1.00 25.00           C
ATOM    115  CA  ILE   115      24.758  26.160  78.280  1.00 25.00           C
ATOM    116  CA  GLY   116      27.343  25.605  81.095  1.00 25.00           C
ATOM    117  CA  LEU   117      30.588  23.668  80.540  1.00 25.00           C
ATOM    118  CA  ALA   118      28.452  20.499  80.428  1.00 25.00           C
ATOM    119  CA  PRO   119      27.910  20.965  76.693  1.00 25.00           C
ATOM    120  CA  GLU   120      30.013  17.842  76.158  1.00 25.00           C
ATOM    121  CA  HIS   121      27.703  15.245  77.627  1.00 25.00           C
ATOM    122  CA  PHE   122      25.849  15.189  74.355  1.00 25.00           C
ATOM    123  CA  HIS   123      26.921  15.070  70.658  1.00 25.00           C
ATOM    124  CA  TYR   124      25.662  17.886  68.507  1.00 25.00           C
ATOM    125  CA  GLN   125      22.002  17.078  69.292  1.00 25.00           C
ATOM    126  CA  LEU   126      21.939  19.833  71.951  1.00 25.00           C
ATOM    127  CA  LEU   127      23.424  22.320  69.447  1.00 25.00           C
ATOM    128  CA  ASN   128      20.776  21.335  66.862  1.00 25.00           C
ATOM    129  CA  GLN   129      18.014  21.826  69.468  1.00 25.00           C
ATOM    130  CA  ALA   130      19.426  25.273  70.352  1.00 25.00           C
ATOM    131  CA  PHE   131      19.502  26.221  66.642  1.00 25.00           C
ATOM    132  CA  ARG   132      15.868  25.078  66.250  1.00 25.00           C
ATOM    133  CA  LEU   133      14.858  27.163  69.300  1.00 25.00           C
ATOM    134  CA  LEU   134      16.647  30.216  67.837  1.00 25.00           C
ATOM    135  CA  LEU   135      14.839  29.706  64.498  1.00 25.00           C
ATOM    136  CA  ASP   136      11.174  29.631  65.495  1.00 25.00           C
ATOM    137  CA  GLY   137      11.217  32.297  68.230  1.00 25.00           C
ATOM    138  CA  ALA   138      13.617  32.694  71.065  1.00 25.00           C
ATOM    139  CA  PRO   139      16.367  34.046  73.277  1.00 25.00           C
ATOM    140  CA  LEU   140      19.303  32.234  74.825  1.00 25.00           C
ATOM    141  CA  ILE   141      22.085  30.472  76.791  1.00 25.00           C
ATOM    142  CA  ALA   142      25.654  30.990  75.614  1.00 25.00           C
ATOM    143  CA  ILE   143      26.435  30.168  79.245  1.00 25.00           C
ATOM    144  CA  HIS   144      30.137  29.675  79.577  1.00 25.00           C
ATOM    145  CA  LYS   145      33.233  31.141  78.036  1.00 25.00           C
ATOM    146  CA  ALA   146      35.364  28.359  76.563  1.00 25.00           C
ATOM    147  CA  ARG   147      37.416  25.311  77.536  1.00 25.00           C
ATOM    148  CA  TYR   148      36.311  25.380  81.186  1.00 25.00           C
ATOM    149  CA  TYR   149      35.727  22.221  83.115  1.00 25.00           C
ATOM    150  CA  LYS   150      38.017  19.369  84.126  1.00 25.00           C
ATOM    151  CA  ARG   151      38.049  16.132  86.193  1.00 25.00           C
ATOM    152  CA  LYS   152      41.348  14.788  84.739  1.00 25.00           C
ATOM    153  CA  ASP   153      42.930  14.714  81.282  1.00 25.00           C
ATOM    154  CA  GLY   154      42.373  18.177  79.819  1.00 25.00           C
ATOM    155  CA  LEU   155      38.773  17.336  79.061  1.00 25.00           C
ATOM    156  CA  ALA   156      35.676  17.220  76.870  1.00 25.00           C
ATOM    157  CA  LEU   157      34.265  20.558  75.720  1.00 25.00           C
ATOM    158  CA  GLY   158      32.819  24.054  75.950  1.00 25.00           C
ATOM    159  CA  PRO   159      29.460  25.817  75.962  1.00 25.00           C
ATOM    160  CA  GLY   160      31.384  28.412  73.905  1.00 25.00           C
ATOM    161  CA  PRO   161      31.115  26.185  70.800  1.00 25.00           C
ATOM    162  CA  PHE   162      27.348  25.802  71.371  1.00 25.00           C
ATOM    163  CA  VAL   163      26.988  29.599  71.712  1.00 25.00           C
ATOM    164  CA  THR   164      28.944  30.102  68.457  1.00 25.00           C
ATOM    165  CA  ALA   165      26.688  27.568  66.681  1.00 25.00           C
ATOM    166  CA  LEU   166      23.580  29.384  67.987  1.00 25.00           C
ATOM    167  CA  GLU   167      24.979  32.725  66.744  1.00 25.00           C
ATOM    168  CA  TYR   168      25.665  31.187  63.305  1.00 25.00           C
ATOM    169  CA  ALA   169      22.090  29.817  63.177  1.00 25.00           C
ATOM    170  CA  THR   170      20.709  33.270  64.096  1.00 25.00           C
ATOM    171  CA  ASP   171      19.676  36.724  65.439  1.00 25.00           C
ATOM    172  CA  THR   172      18.201  35.066  68.526  1.00 25.00           C
ATOM    173  CA  LYS   173      21.345  35.657  70.604  1.00 25.00           C
ATOM    174  CA  ALA   174      23.185  35.430  73.903  1.00 25.00           C
ATOM    175  CA  MET   175      20.966  35.833  77.000  1.00 25.00           C
ATOM    176  CA  VAL   176      23.758  34.522  79.226  1.00 25.00           C
ATOM    177  CA  VAL   177      23.875  32.944  82.675  1.00 25.00           C
ATOM    178  CA  GLY   178      27.425  31.921  83.261  1.00 25.00           C
TER
END
