
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  122 (  122),  selected  122 , name T0342TS168_4-D1
# Molecule2: number of CA atoms  122 (  967),  selected  122 , name T0342_D1.pdb
# PARAMETERS: T0342TS168_4-D1.T0342_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    31        75 - 105         4.98    16.42
  LONGEST_CONTINUOUS_SEGMENT:    31        76 - 106         4.98    16.43
  LCS_AVERAGE:     21.87

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    13        88 - 100         1.56    18.80
  LONGEST_CONTINUOUS_SEGMENT:    13        89 - 101         1.81    20.93
  LCS_AVERAGE:      7.42

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:     9        89 - 97          0.89    18.38
  LONGEST_CONTINUOUS_SEGMENT:     9       107 - 115         0.99    19.57
  LCS_AVERAGE:      4.29

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  122
LCS_GDT     E      14     E      14      4    9   18     0    3    4    8    9    9   11   13   16   17   19   25   32   36   43   46   51   56   57   61 
LCS_GDT     E      15     E      15      5    9   18     2    5    7    8    9    9   13   13   15   20   23   30   36   39   43   48   51   56   58   61 
LCS_GDT     S      16     S      16      5    9   29     3    5    7    8    9    9   13   13   16   20   23   28   36   39   43   48   51   56   58   61 
LCS_GDT     F      17     F      17      5    9   29     3    5    7    8    9    9   13   14   16   20   23   30   36   39   43   48   51   56   58   61 
LCS_GDT     L      18     L      18      5    9   29     3    5    7    8   10   11   15   16   19   20   23   28   36   39   43   48   51   56   58   61 
LCS_GDT     Y      19     Y      19      5    9   29     3    5    7    8   10   11   15   16   19   20   23   30   36   39   43   48   51   56   58   61 
LCS_GDT     F      20     F      20      5    9   29     3    7    9   10   11   13   15   16   19   20   23   30   36   39   43   48   51   56   58   61 
LCS_GDT     A      21     A      21      5    9   29     3    4    7    8   12   13   14   16   19   20   23   27   36   39   43   48   51   56   58   61 
LCS_GDT     Y      22     Y      22      3    9   29     3    3    7    8    9   15   18   18   20   22   24   35   38   40   43   47   51   56   58   61 
LCS_GDT     G      23     G      23      3    7   29     3    5    5    9   12   13   16   20   22   25   31   35   36   39   43   48   51   56   58   61 
LCS_GDT     S      24     S      24      3    4   29     3    3    4    7    9   11   13   15   17   20   24   28   35   38   43   48   51   56   58   61 
LCS_GDT     N      25     N      25      4    4   29     3    4    4    9   12   13   15   19   20   23   31   35   36   39   43   48   51   56   58   61 
LCS_GDT     L      26     L      26      4    4   29     3    4    4    7    9   13   15   19   20   25   31   35   36   39   43   48   51   56   58   61 
LCS_GDT     L      27     L      27      4    9   29     3    4    7    7   12   12   14   19   22   25   31   35   36   39   42   48   51   56   58   61 
LCS_GDT     T      28     T      28      8    9   29     6    7    8    9    9   10   15   18   22   25   30   33   36   39   40   43   51   56   58   61 
LCS_GDT     E      29     E      29      8    9   29     6    7    8    9    9   15   17   20   22   25   30   35   36   39   40   43   51   56   58   61 
LCS_GDT     R      30     R      30      8    9   29     6    7    8   10   12   15   17   20   22   25   31   35   36   39   42   48   51   56   58   61 
LCS_GDT     I      31     I      31      8    9   29     6    7    8   10   12   15   17   20   22   25   31   35   36   39   43   48   51   56   58   61 
LCS_GDT     H      32     H      32      8    9   29     6    7    8    9   12   15   17   20   22   25   31   35   36   39   42   48   51   56   58   61 
LCS_GDT     L      33     L      33      8    9   29     6    7    8   10   12   15   17   20   22   25   31   35   36   39   43   48   51   56   58   61 
LCS_GDT     R      34     R      34      8    9   29     3    4    8   10   12   15   17   20   22   25   31   35   36   39   43   48   51   56   58   61 
LCS_GDT     N      35     N      35      8    9   29     3    7    8   10   12   15   17   20   22   25   31   35   36   39   42   48   51   56   58   61 
LCS_GDT     P      36     P      36      4    9   29     3    3    4    9   10   11   15   19   22   25   31   35   36   39   43   48   51   56   58   61 
LCS_GDT     S      37     S      37      4    7   29     3    3    7    7   10   11   15   17   19   21   25   30   36   39   43   48   51   56   58   61 
LCS_GDT     A      38     A      38      4    6   29     3    3    5    7   10   11   15   17   19   21   25   30   36   39   43   48   51   56   58   61 
LCS_GDT     A      39     A      39      4    7   29     3    3    5    6    9   10   13   14   16   20   23   27   36   39   43   48   51   56   58   61 
LCS_GDT     F      40     F      40      4    8   29     3    4    5    8    9   10   13   14   18   20   23   27   31   39   43   48   51   56   58   61 
LCS_GDT     F      41     F      41      5    8   29     3    4    5    8   10   11   15   16   19   20   23   30   36   39   43   48   51   56   58   61 
LCS_GDT     C      42     C      42      5    8   29     3    4    5    8    9   10   13   15   19   20   23   26   29   35   42   48   51   56   58   61 
LCS_GDT     V      43     V      43      5    8   29     3    4    5    7    9   10   13   16   19   20   23   26   29   33   37   43   51   53   57   61 
LCS_GDT     A      44     A      44      5    8   29     3    3    5    8    9   10   13   14   16   17   21   26   31   39   39   46   51   56   58   61 
LCS_GDT     R      45     R      45      5    8   29     3    4    5    8    9   11   14   18   20   22   24   35   36   39   40   48   51   56   58   61 
LCS_GDT     L      46     L      46      3    8   23     3    3    7    9   11   13   15   19   21   25   31   35   36   39   43   48   51   56   58   61 
LCS_GDT     Q      47     Q      47      3    8   23     3    3    4    8   10   12   15   19   22   25   31   35   36   39   43   48   51   56   58   61 
LCS_GDT     D      48     D      48      4   10   23     3    3    5    8    9   12   13   15   16   21   25   30   36   39   43   48   51   56   58   61 
LCS_GDT     F      49     F      49      4   10   23     3    4    5    8    9   13   14   16   17   21   25   30   36   39   43   48   51   56   58   61 
LCS_GDT     K      50     K      50      4   10   23     3    4    5    8    9   11   13   15   16   20   22   28   32   36   43   47   50   56   58   61 
LCS_GDT     L      51     L      51      4   10   23     3    4    5    7    9   11   13   16   17   18   19   24   26   31   36   42   46   51   54   57 
LCS_GDT     D      52     D      52      5   10   23     3    4    5    8    9   12   13   16   17   18   22   24   25   27   31   35   36   40   45   49 
LCS_GDT     F      53     F      53      6   10   23     3    4    5    8    9   12   13   16   17   18   22   24   25   29   32   36   40   45   50   51 
LCS_GDT     G      54     G      54      6   10   23     3    4    5    8    9   12   13   13   17   18   22   24   25   27   30   35   38   42   47   51 
LCS_GDT     N      55     N      55      6   10   23     3    5    5    8    9   11   11   13   15   16   18   21   24   25   29   31   36   42   45   49 
LCS_GDT     S      56     S      56      6   10   23     3    5    5    8    9   11   11   12   14   15   17   20   24   27   30   32   41   43   45   47 
LCS_GDT     Q      57     Q      57      6   10   23     3    5    5    7    9   11   11   12   14   15   17   20   24   27   30   32   41   43   45   47 
LCS_GDT     G      58     G      58      6    8   23     3    5    5    8    8   10   11   12   15   16   18   21   24   25   29   31   36   38   40   43 
LCS_GDT     K      59     K      59      3    8   23     3    3    5    8    8   10   11   13   15   16   19   21   24   25   29   31   36   38   40   43 
LCS_GDT     T      60     T      60      3    6   23     3    3    4    8    8   12   13   13   14   16   19   21   24   25   29   31   36   38   40   46 
LCS_GDT     S      61     S      61      4    6   23     3    3    5    8    9   12   13   13   15   16   19   21   24   27   31   34   38   42   45   49 
LCS_GDT     Q      62     Q      62      4    6   23     3    3    5    7    8   12   13   13   15   16   19   21   23   27   31   33   38   41   44   48 
LCS_GDT     T      63     T      63      4    6   23     3    3    5    7    8   12   13   13   15   16   19   22   23   33   35   37   40   44   49   50 
LCS_GDT     W      64     W      64      4    6   23     3    3    5    7    8   12   14   18   22   24   28   31   34   38   41   45   47   49   51   53 
LCS_GDT     H      65     H      65      4    6   23     3    4    4    4    6    6    7   12   14   17   24   26   30   32   34   39   43   45   50   51 
LCS_GDT     G      66     G      66      4    6   23     3    4    4    7    9   10   14   15   19   24   27   29   33   37   39   44   47   49   51   53 
LCS_GDT     G      67     G      67      4    7   23     3    4    5    7    9   11   17   18   24   28   32   36   39   40   43   46   47   49   51   53 
LCS_GDT     I      68     I      68      4    8   23     3    4    4    7    9   11   17   20   24   28   32   36   39   40   43   46   47   49   51   53 
LCS_GDT     A      69     A      69      5    8   23     3    5    6    7    9   12   17   20   24   28   32   36   39   40   43   46   47   49   51   53 
LCS_GDT     T      70     T      70      5    8   23     3    5    6    6    8   11   14   18   24   28   30   36   39   40   43   46   47   49   51   53 
LCS_GDT     I      71     I      71      5    8   23     3    5    6    7    8   12   17   20   24   28   32   36   39   40   43   46   47   49   51   53 
LCS_GDT     F      72     F      72      5    8   23     3    5    6    7    8   12   14   16   20   25   30   36   39   40   43   46   47   49   51   53 
LCS_GDT     Q      73     Q      73      5    8   23     3    5    6    7    8   12   13   16   20   25   30   36   39   40   43   46   47   49   51   53 
LCS_GDT     S      74     S      74      5    8   23     3    4    5    6    8   10   11   16   18   25   29   32   39   40   43   46   47   49   51   53 
LCS_GDT     P      75     P      75      4    8   31     3    4    5    7    9   12   17   20   24   28   32   36   39   40   43   46   47   49   51   53 
LCS_GDT     G      76     G      76      4    8   31     3    4    4    5    7    8    9   17   24   26   32   36   39   40   43   46   47   49   51   53 
LCS_GDT     D      77     D      77      4    8   31     3    4    5    8   10   13   17   20   24   28   32   36   39   40   43   46   47   49   51   53 
LCS_GDT     E      78     E      78      4   10   31     3    4    7    8   10   13   17   20   24   28   32   36   39   40   43   46   47   49   51   53 
LCS_GDT     V      79     V      79      4   10   31     3    4    7    8   10   13   17   20   24   28   32   36   39   40   43   46   47   49   51   54 
LCS_GDT     W      80     W      80      4   10   31     3    4    7    8   11   13   17   20   24   28   32   36   39   40   43   46   49   53   55   58 
LCS_GDT     G      81     G      81      6   10   31     3    4    7    8   11   13   15   19   24   28   32   36   39   40   43   48   51   56   58   61 
LCS_GDT     V      82     V      82      6   10   31     3    4    7    8   11   13   18   19   22   25   31   35   36   39   43   48   51   56   58   61 
LCS_GDT     V      83     V      83      6   10   31     3    4    7   10   12   15   18   20   22   25   31   35   36   39   41   48   51   56   58   61 
LCS_GDT     W      84     W      84      6   10   31     3    4    7    8   11   15   18   18   20   21   22   27   32   39   40   42   47   49   51   55 
LCS_GDT     K      85     K      85      6   10   31     3    4    7    8   12   15   18   18   20   21   22   27   32   36   38   41   47   49   51   53 
LCS_GDT     M      86     M      86      6   10   31     3    4    7    8    9   13   15   16   19   19   21   23   26   36   38   41   47   49   51   53 
LCS_GDT     N      87     N      87      3   10   31     0    4    6    8   12   13   18   18   20   21   23   27   32   36   40   43   47   49   51   53 
LCS_GDT     K      88     K      88      4   13   31     4    4   10   12   12   15   18   19   24   28   32   35   39   40   43   46   47   49   51   53 
LCS_GDT     S      89     S      89      9   13   31     4    4   10   12   12   15   18   19   24   28   32   35   39   40   43   46   47   49   51   53 
LCS_GDT     N      90     N      90      9   13   31     8    9   10   12   12   15   18   20   24   28   32   36   39   40   43   46   47   49   51   53 
LCS_GDT     L      91     L      91      9   13   31     8    9   10   12   12   14   18   20   24   28   32   36   39   40   43   46   47   49   51   53 
LCS_GDT     N      92     N      92      9   13   31     8    9   10   12   12   15   18   20   24   28   32   36   39   40   43   46   47   49   51   53 
LCS_GDT     S      93     S      93      9   13   31     8    9   10   12   12   15   18   20   24   28   32   36   39   40   43   46   47   49   51   53 
LCS_GDT     L      94     L      94      9   13   31     8    9   10   12   12   15   18   20   24   28   32   36   39   40   43   46   47   56   58   61 
LCS_GDT     D      95     D      95      9   13   31     8    9   10   12   12   15   18   20   24   28   32   36   39   40   43   48   51   56   58   61 
LCS_GDT     E      96     E      96      9   13   31     8    9   10   12   12   15   18   20   24   28   32   36   39   40   43   48   51   56   58   61 
LCS_GDT     Q      97     Q      97      9   13   31     8    9   10   12   12   15   18   19   23   25   32   36   39   40   43   48   51   56   58   61 
LCS_GDT     E      98     E      98      3   13   31     3    3    5    8   11   13   15   16   19   23   25   27   31   33   42   48   51   56   58   61 
LCS_GDT     G      99     G      99      3   13   31     3    5   10   12   12   15   18   19   23   26   32   36   39   40   43   48   51   56   58   61 
LCS_GDT     V     100     V     100      4   13   31     3    9   10   12   12   15   18   20   24   28   32   36   39   40   43   48   51   56   58   61 
LCS_GDT     K     101     K     101      4   13   31     3    4    6    9   11   14   17   20   24   28   32   36   39   40   43   46   49   53   55   58 
LCS_GDT     S     102     S     102      4    8   31     3    4    6    9   11   14   17   20   24   28   32   36   39   40   43   46   47   49   54   57 
LCS_GDT     G     103     G     103      4    8   31     3    4    6    9   11   14   17   19   24   27   32   36   39   40   43   46   47   49   51   53 
LCS_GDT     M     104     M     104      3    8   31     3    3    4    6    8   12   15   17   24   28   32   36   39   40   43   46   47   49   53   57 
LCS_GDT     Y     105     Y     105      3   11   31     1    5    8    9   10   13   17   20   24   28   32   36   39   40   43   46   51   54   58   61 
LCS_GDT     V     106     V     106      4   11   31     1    5    8    9   11   13   15   17   20   25   26   30   35   40   43   47   51   56   58   61 
LCS_GDT     V     107     V     107      9   11   27     4    6    8    9   11   13   16   17   20   25   26   30   36   39   43   48   51   56   58   61 
LCS_GDT     I     108     I     108      9   11   27     4    6    8    9   11   13   15   17   20   24   25   30   36   39   43   48   51   56   58   61 
LCS_GDT     E     109     E     109      9   11   27     4    6    8    9   11   13   16   17   20   24   25   30   36   39   43   48   51   56   58   61 
LCS_GDT     V     110     V     110      9   11   27     4    5    8    9   11   13   16   18   20   24   25   32   36   39   43   48   51   56   58   61 
LCS_GDT     K     111     K     111      9   11   27     4    6    8    9   11   14   16   19   21   25   31   35   36   39   43   48   51   56   58   61 
LCS_GDT     V     112     V     112      9   11   27     4    6    8   10   12   15   17   20   22   25   31   35   36   40   43   48   51   56   58   61 
LCS_GDT     A     113     A     113      9   11   27     4    5    8    9   11   14   15   20   22   25   31   36   39   40   43   48   51   56   58   61 
LCS_GDT     T     114     T     114      9   11   27     3    5    8    9   11   13   17   20   22   27   30   36   39   40   43   48   51   56   58   61 
LCS_GDT     Q     115     Q     115      9   11   25     3    6    8    9   11   14   17   20   24   28   32   36   39   40   43   48   51   56   58   61 
LCS_GDT     E     116     E     116      3   11   25     3    3    7    8   11   14   17   20   24   28   32   36   39   40   43   46   51   55   58   61 
LCS_GDT     G     117     G     117      3    8   25     3    3    6    7    9   13   17   20   24   28   32   36   39   40   43   46   47   51   56   61 
LCS_GDT     K     118     K     118      4    7   25     3    4    7   10   12   15   17   20   24   28   32   36   39   40   43   46   47   49   51   53 
LCS_GDT     E     119     E     119      4    8   25     3    4    6    7   11   14   17   20   23   27   31   36   39   40   43   46   47   49   53   59 
LCS_GDT     I     120     I     120      4    8   25     3    4    5   10   12   15   17   20   22   25   31   35   36   39   43   46   47   49   54   61 
LCS_GDT     T     121     T     121      4    8   25     3    4    6    7    9   12   17   20   22   25   31   35   36   39   40   41   45   51   58   61 
LCS_GDT     C     122     C     122      5    9   25     3    4    6    9   12   13   16   20   22   25   31   35   36   39   40   43   50   54   58   61 
LCS_GDT     R     123     R     123      5    9   25     3    4    6    9   12   13   16   19   22   25   31   35   36   39   40   41   45   48   58   61 
LCS_GDT     S     124     S     124      5    9   25     0    4    7    9   12   13   16   20   22   25   31   35   36   39   40   43   50   54   58   61 
LCS_GDT     Y     125     Y     125      5    9   24     2    4    7   10   12   15   17   20   22   25   31   35   36   39   40   41   45   48   51   55 
LCS_GDT     L     126     L     126      5    9   22     3    4    7   10   12   15   17   20   22   25   31   35   36   39   40   41   45   48   50   53 
LCS_GDT     M     127     M     127      3    9   22     3    3    5    8   12   15   17   20   22   25   31   35   36   39   40   41   43   45   48   49 
LCS_GDT     T     128     T     128      3    9   22     3    4    7    9   12   15   17   20   22   25   31   35   36   39   40   41   43   45   48   50 
LCS_GDT     N     129     N     129      4    9   22     3    4    7    9   12   13   15   20   22   25   31   35   36   39   40   40   43   45   48   50 
LCS_GDT     Y     130     Y     130      4    9   22     3    4    7    9   12   13   15   19   20   24   29   35   36   39   40   41   43   45   47   49 
LCS_GDT     E     131     E     131      4    8   18     2    3    5    6    8   12   14   18   20   24   25   31   34   39   39   41   43   45   47   48 
LCS_GDT     S     132     S     132      4    6   18     0    3    5    5    6   12   14   16   20   24   25   31   34   39   39   41   43   45   47   48 
LCS_GDT     A     133     A     133      3    6   18     0    3    5    5    5   10   14   16   20   24   25   31   34   39   39   41   43   45   45   48 
LCS_GDT     P     134     P     134      3    4   18     1    3    3    3    5    7   14   14   16   20   22   31   34   39   39   41   43   44   45   47 
LCS_GDT     P     135     P     135      3    3   18     0    3    4    5    5    5    6    8   13   19   22   31   34   39   39   41   43   45   45   48 
LCS_AVERAGE  LCS_A:  11.19  (   4.29    7.42   21.87 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA      8      9     10     12     12     15     18     20     24     28     32     36     39     40     43     48     51     56     58     61 
GDT PERCENT_CA   6.56   7.38   8.20   9.84   9.84  12.30  14.75  16.39  19.67  22.95  26.23  29.51  31.97  32.79  35.25  39.34  41.80  45.90  47.54  50.00
GDT RMS_LOCAL    0.16   0.51   0.68   1.14   1.14   2.03   2.49   2.53   3.24   3.57   3.97   4.38   4.55   4.64   4.99   5.79   6.01   7.57   6.47   6.82
GDT RMS_ALL_CA  19.00  19.14  18.93  17.84  17.84  17.28  17.97  17.29  16.11  16.05  15.99  15.88  15.92  15.92  15.88  18.21  18.34  18.29  18.19  18.11

#      Molecule1      Molecule2       DISTANCE
LGA    E      14      E      14         36.716
LGA    E      15      E      15         32.524
LGA    S      16      S      16         28.284
LGA    F      17      F      17         23.298
LGA    L      18      L      18         19.484
LGA    Y      19      Y      19         13.923
LGA    F      20      F      20         10.457
LGA    A      21      A      21          8.369
LGA    Y      22      Y      22          8.317
LGA    G      23      G      23          3.579
LGA    S      24      S      24          7.293
LGA    N      25      N      25          6.977
LGA    L      26      L      26          8.142
LGA    L      27      L      27          6.521
LGA    T      28      T      28          4.196
LGA    E      29      E      29          3.036
LGA    R      30      R      30          0.324
LGA    I      31      I      31          1.581
LGA    H      32      H      32          2.308
LGA    L      33      L      33          2.091
LGA    R      34      R      34          1.770
LGA    N      35      N      35          1.709
LGA    P      36      P      36          6.744
LGA    S      37      S      37         10.565
LGA    A      38      A      38         12.105
LGA    A      39      A      39         17.830
LGA    F      40      F      40         18.637
LGA    F      41      F      41         17.722
LGA    C      42      C      42         15.331
LGA    V      43      V      43         13.205
LGA    A      44      A      44          9.244
LGA    R      45      R      45          7.042
LGA    L      46      L      46          5.104
LGA    Q      47      Q      47          4.997
LGA    D      48      D      48         11.109
LGA    F      49      F      49         12.094
LGA    K      50      K      50         12.153
LGA    L      51      L      51         11.356
LGA    D      52      D      52         14.918
LGA    F      53      F      53         19.029
LGA    G      54      G      54         19.281
LGA    N      55      N      55         19.278
LGA    S      56      S      56         13.731
LGA    Q      57      Q      57         16.106
LGA    G      58      G      58         23.224
LGA    K      59      K      59         27.675
LGA    T      60      T      60         30.254
LGA    S      61      S      61         25.101
LGA    Q      62      Q      62         26.630
LGA    T      63      T      63         22.782
LGA    W      64      W      64         21.278
LGA    H      65      H      65         25.252
LGA    G      66      G      66         24.946
LGA    G      67      G      67         19.960
LGA    I      68      I      68         15.578
LGA    A      69      A      69         16.916
LGA    T      70      T      70         19.068
LGA    I      71      I      71         19.723
LGA    F      72      F      72         23.910
LGA    Q      73      Q      73         26.258
LGA    S      74      S      74         31.034
LGA    P      75      P      75         34.916
LGA    G      76      G      76         34.292
LGA    D      77      D      77         31.326
LGA    E      78      E      78         25.944
LGA    V      79      V      79         21.082
LGA    W      80      W      80         17.778
LGA    G      81      G      81         11.555
LGA    V      82      V      82          5.586
LGA    V      83      V      83          1.945
LGA    W      84      W      84          7.042
LGA    K      85      K      85         14.349
LGA    M      86      M      86         18.072
LGA    N      87      N      87         24.983
LGA    K      88      K      88         30.070
LGA    S      89      S      89         33.982
LGA    N      90      N      90         28.157
LGA    L      91      L      91         24.691
LGA    N      92      N      92         28.184
LGA    S      93      S      93         26.277
LGA    L      94      L      94         19.522
LGA    D      95      D      95         20.424
LGA    E      96      E      96         22.615
LGA    Q      97      Q      97         17.330
LGA    E      98      E      98         16.144
LGA    G      99      G      99         16.075
LGA    V     100      V     100         19.717
LGA    K     101      K     101         22.909
LGA    S     102      S     102         20.193
LGA    G     103      G     103         17.698
LGA    M     104      M     104         13.495
LGA    Y     105      Y     105         15.485
LGA    V     106      V     106         17.000
LGA    V     107      V     107         15.828
LGA    I     108      I     108         12.961
LGA    E     109      E     109         10.761
LGA    V     110      V     110          7.192
LGA    K     111      K     111          4.913
LGA    V     112      V     112          1.894
LGA    A     113      A     113          5.267
LGA    T     114      T     114         11.535
LGA    Q     115      Q     115         13.746
LGA    E     116      E     116         11.974
LGA    G     117      G     117          6.176
LGA    K     118      K     118          1.914
LGA    E     119      E     119          3.486
LGA    I     120      I     120          1.726
LGA    T     121      T     121          3.479
LGA    C     122      C     122          3.725
LGA    R     123      R     123          4.807
LGA    S     124      S     124          3.610
LGA    Y     125      Y     125          1.251
LGA    L     126      L     126          1.189
LGA    M     127      M     127          2.797
LGA    T     128      T     128          3.462
LGA    N     129      N     129          4.396
LGA    Y     130      Y     130          6.754
LGA    E     131      E     131         11.468
LGA    S     132      S     132         13.765
LGA    A     133      A     133         12.398
LGA    P     134      P     134         14.901
LGA    P     135      P     135         11.772

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  122  122    4.0     20    2.53    18.238    15.339     0.760

LGA_LOCAL      RMSD =  2.533  Number of atoms =   20  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 17.295  Number of atoms =  122 
Std_ALL_ATOMS  RMSD = 15.490  (standard rmsd on all 122 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.299910 * X  +   0.925077 * Y  +  -0.232995 * Z  +  -4.262482
  Y_new =  -0.949653 * X  +   0.312714 * Y  +   0.019202 * Z  +  92.163872
  Z_new =   0.090624 * X  +   0.215506 * Y  +   0.972288 * Z  +   4.717122 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   0.218121   -2.923471  [ DEG:    12.4974   -167.5026 ]
  Theta =  -0.090749   -3.050844  [ DEG:    -5.1995   -174.8005 ]
  Phi   =  -1.264899    1.876694  [ DEG:   -72.4734    107.5266 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0342TS168_4-D1                               
REMARK     2: T0342_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0342TS168_4-D1.T0342_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  122  122   4.0   20   2.53  15.339    15.49
REMARK  ---------------------------------------------------------- 
MOLECULE T0342TS168_4-D1
PFRMAT TS
TARGET T0342
MODEL 4
PARENT N/A
ATOM     14  CA  GLU    14     -13.428 108.243   4.242  1.00 25.00           C
ATOM     15  CA  GLU    15     -13.223 105.682   1.361  1.00 25.00           C
ATOM     16  CA  SER    16     -11.057 102.768   2.599  1.00 25.00           C
ATOM     17  CA  PHE    17      -8.653 100.256   3.998  1.00 25.00           C
ATOM     18  CA  LEU    18      -6.968  96.845   4.565  1.00 25.00           C
ATOM     19  CA  TYR    19      -6.059  93.222   5.275  1.00 25.00           C
ATOM     20  CA  PHE    20      -2.287  92.807   4.989  1.00 25.00           C
ATOM     21  CA  ALA    21      -3.617  89.382   5.720  1.00 25.00           C
ATOM     22  CA  TYR    22      -1.567  86.603   4.170  1.00 25.00           C
ATOM     23  CA  GLY    23       1.384  87.824   6.286  1.00 25.00           C
ATOM     24  CA  SER    24       3.291  86.033   3.500  1.00 25.00           C
ATOM     25  CA  ASN    25       1.727  85.292   0.048  1.00 25.00           C
ATOM     26  CA  LEU    26       0.128  82.171   1.542  1.00 25.00           C
ATOM     27  CA  LEU    27       3.437  81.219   3.162  1.00 25.00           C
ATOM     28  CA  THR    28       2.764  81.965   6.809  1.00 25.00           C
ATOM     29  CA  GLU    29       1.416  78.541   7.868  1.00 25.00           C
ATOM     30  CA  ARG    30      -1.750  80.189   9.256  1.00 25.00           C
ATOM     31  CA  ILE    31      -2.218  82.109   5.976  1.00 25.00           C
ATOM     32  CA  HIS    32      -1.806  78.862   3.989  1.00 25.00           C
ATOM     33  CA  LEU    33      -4.396  77.137   6.220  1.00 25.00           C
ATOM     34  CA  ARG    34      -6.825  80.051   5.694  1.00 25.00           C
ATOM     35  CA  ASN    35      -6.398  79.605   1.925  1.00 25.00           C
ATOM     36  CA  PRO    36      -9.491  78.968  -0.167  1.00 25.00           C
ATOM     37  CA  SER    37      -9.715  82.772  -0.446  1.00 25.00           C
ATOM     38  CA  ALA    38      -8.963  84.895   2.678  1.00 25.00           C
ATOM     39  CA  ALA    39      -8.423  88.657   3.220  1.00 25.00           C
ATOM     40  CA  PHE    40      -6.213  91.041   1.225  1.00 25.00           C
ATOM     41  CA  PHE    41      -3.030  92.163  -0.613  1.00 25.00           C
ATOM     42  CA  CYS    42      -0.381  90.317   1.397  1.00 25.00           C
ATOM     43  CA  VAL    43       2.483  91.347   3.692  1.00 25.00           C
ATOM     44  CA  ALA    44       5.715  89.838   4.927  1.00 25.00           C
ATOM     45  CA  ARG    45       8.940  88.027   5.618  1.00 25.00           C
ATOM     46  CA  LEU    46      10.601  91.420   5.326  1.00 25.00           C
ATOM     47  CA  GLN    47      14.019  92.592   4.249  1.00 25.00           C
ATOM     48  CA  ASP    48      15.393  89.470   6.023  1.00 25.00           C
ATOM     49  CA  PHE    49      14.070  87.396   3.077  1.00 25.00           C
ATOM     50  CA  LYS    50      11.876  89.518   0.807  1.00 25.00           C
ATOM     51  CA  LEU    51       8.159  90.393   0.483  1.00 25.00           C
ATOM     52  CA  ASP    52       4.450  89.761  -0.122  1.00 25.00           C
ATOM     53  CA  PHE    53       2.796  89.043  -3.438  1.00 25.00           C
ATOM     54  CA  GLY    54       0.540  92.057  -4.266  1.00 25.00           C
ATOM     55  CA  ASN    55      -0.580  95.631  -4.887  1.00 25.00           C
ATOM     56  CA  SER    56      -1.057  98.732  -2.730  1.00 25.00           C
ATOM     57  CA  GLN    57      -3.238 100.630  -5.279  1.00 25.00           C
ATOM     58  CA  GLY    58      -1.066 100.267  -8.389  1.00 25.00           C
ATOM     59  CA  LYS    59      -0.703  99.187 -12.000  1.00 25.00           C
ATOM     60  CA  THR    60      -1.540  95.643 -13.054  1.00 25.00           C
ATOM     61  CA  SER    61      -3.760  95.766  -9.983  1.00 25.00           C
ATOM     62  CA  GLN    62      -7.253  94.318 -10.032  1.00 25.00           C
ATOM     63  CA  THR    63      -9.428  92.508  -7.475  1.00 25.00           C
ATOM     64  CA  TRP    64      -7.568  93.576  -4.366  1.00 25.00           C
ATOM     65  CA  HIS    65      -4.739  91.442  -5.879  1.00 25.00           C
ATOM     66  CA  GLY    66      -5.974  87.882  -5.465  1.00 25.00           C
ATOM     67  CA  GLY    67      -6.667  87.596  -1.697  1.00 25.00           C
ATOM     68  CA  ILE    68      -3.440  85.901  -0.474  1.00 25.00           C
ATOM     69  CA  ALA    69      -1.604  85.432  -3.734  1.00 25.00           C
ATOM     70  CA  THR    70      -0.082  81.926  -4.009  1.00 25.00           C
ATOM     71  CA  ILE    71       3.320  80.704  -2.938  1.00 25.00           C
ATOM     72  CA  PHE    72       6.694  79.000  -3.158  1.00 25.00           C
ATOM     73  CA  GLN    73      10.037  77.210  -2.687  1.00 25.00           C
ATOM     74  CA  SER    74      10.357  74.877  -5.715  1.00 25.00           C
ATOM     75  CA  PRO    75       9.109  71.457  -6.902  1.00 25.00           C
ATOM     76  CA  GLY    76       5.522  72.737  -6.887  1.00 25.00           C
ATOM     77  CA  ASP    77       4.951  75.446  -9.518  1.00 25.00           C
ATOM     78  CA  GLU    78       4.102  79.122 -10.342  1.00 25.00           C
ATOM     79  CA  VAL    79       2.429  81.932  -8.368  1.00 25.00           C
ATOM     80  CA  TRP    80       2.256  85.727  -7.942  1.00 25.00           C
ATOM     81  CA  GLY    81       4.808  85.025  -5.211  1.00 25.00           C
ATOM     82  CA  VAL    82       6.506  85.476  -1.837  1.00 25.00           C
ATOM     83  CA  VAL    83       7.505  83.938   1.461  1.00 25.00           C
ATOM     84  CA  TRP    84       7.633  83.188   5.143  1.00 25.00           C
ATOM     85  CA  LYS    85       9.943  82.875   8.209  1.00 25.00           C
ATOM     86  CA  MET    86       7.398  83.524  10.902  1.00 25.00           C
ATOM     87  CA  ASN    87      10.248  85.325  12.655  1.00 25.00           C
ATOM     88  CA  LYS    88      11.815  87.037  15.688  1.00 25.00           C
ATOM     89  CA  SER    89      10.794  89.389  18.532  1.00 25.00           C
ATOM     90  CA  ASN    90       8.973  91.654  16.039  1.00 25.00           C
ATOM     91  CA  LEU    91       7.144  88.620  14.581  1.00 25.00           C
ATOM     92  CA  ASN    92       6.121  87.514  18.103  1.00 25.00           C
ATOM     93  CA  SER    93       4.823  91.037  18.859  1.00 25.00           C
ATOM     94  CA  LEU    94       2.818  91.025  15.596  1.00 25.00           C
ATOM     95  CA  ASP    95       1.331  87.612  16.494  1.00 25.00           C
ATOM     96  CA  GLU    96       0.373  88.914  19.965  1.00 25.00           C
ATOM     97  CA  GLN    97      -1.289  91.981  18.383  1.00 25.00           C
ATOM     98  CA  GLU    98      -4.917  91.892  19.270  1.00 25.00           C
ATOM     99  CA  GLY    99      -6.306  88.578  18.099  1.00 25.00           C
ATOM    100  CA  VAL   100      -3.615  86.252  16.816  1.00 25.00           C
ATOM    101  CA  LYS   101      -1.796  83.357  15.078  1.00 25.00           C
ATOM    102  CA  SER   102      -5.248  82.616  13.695  1.00 25.00           C
ATOM    103  CA  GLY   103      -6.299  84.543  10.588  1.00 25.00           C
ATOM    104  CA  MET   104      -3.017  86.171   9.786  1.00 25.00           C
ATOM    105  CA  TYR   105       0.334  84.637  10.505  1.00 25.00           C
ATOM    106  CA  VAL   106       2.613  87.628  11.069  1.00 25.00           C
ATOM    107  CA  VAL   107       4.955  90.415   9.977  1.00 25.00           C
ATOM    108  CA  ILE   108       6.342  93.221   7.797  1.00 25.00           C
ATOM    109  CA  GLU   109       6.699  94.968   4.501  1.00 25.00           C
ATOM    110  CA  VAL   110       9.675  96.014   2.392  1.00 25.00           C
ATOM    111  CA  LYS   111      10.013  95.763  -1.426  1.00 25.00           C
ATOM    112  CA  VAL   112      12.441  93.037  -2.640  1.00 25.00           C
ATOM    113  CA  ALA   113      13.478  92.010  -6.152  1.00 25.00           C
ATOM    114  CA  THR   114      12.098  92.154  -9.689  1.00 25.00           C
ATOM    115  CA  GLN   115      15.138  90.305 -10.947  1.00 25.00           C
ATOM    116  CA  GLU   116      18.216  88.977 -12.727  1.00 25.00           C
ATOM    117  CA  GLY   117      20.401  87.732  -9.874  1.00 25.00           C
ATOM    118  CA  LYS   118      18.159  85.476  -7.811  1.00 25.00           C
ATOM    119  CA  GLU   119      14.659  85.958  -6.427  1.00 25.00           C
ATOM    120  CA  ILE   120      10.972  87.054  -6.349  1.00 25.00           C
ATOM    121  CA  THR   121       8.324  89.221  -4.689  1.00 25.00           C
ATOM    122  CA  CYS   122       7.689  92.946  -5.210  1.00 25.00           C
ATOM    123  CA  ARG   123       4.587  95.108  -5.059  1.00 25.00           C
ATOM    124  CA  SER   124       4.661  94.772  -1.244  1.00 25.00           C
ATOM    125  CA  TYR   125       1.127  94.644   0.158  1.00 25.00           C
ATOM    126  CA  LEU   126       0.943  96.414   3.509  1.00 25.00           C
ATOM    127  CA  MET   127      -2.175  98.269   2.594  1.00 25.00           C
ATOM    128  CA  THR   128      -3.647 100.753   5.048  1.00 25.00           C
ATOM    129  CA  ASN   129      -5.366 101.192   8.371  1.00 25.00           C
ATOM    130  CA  TYR   130      -8.432  99.003   9.239  1.00 25.00           C
ATOM    131  CA  GLU   131     -11.871 100.081   8.121  1.00 25.00           C
ATOM    132  CA  SER   132     -12.842 101.658  11.379  1.00 25.00           C
ATOM    133  CA  ALA   133     -12.627 102.000  15.206  1.00 25.00           C
ATOM    134  CA  PRO   134     -13.199  98.248  15.620  1.00 25.00           C
ATOM    135  CA  PRO   135     -10.059  97.132  13.702  1.00 25.00           C
TER
END
