
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  122 (  122),  selected  122 , name T0342TS393_1-D1
# Molecule2: number of CA atoms  122 (  967),  selected  122 , name T0342_D1.pdb
# PARAMETERS: T0342TS393_1-D1.T0342_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    53        69 - 121         4.99    11.08
  LONGEST_CONTINUOUS_SEGMENT:    53        70 - 122         4.98    11.16
  LCS_AVERAGE:     30.58

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    13        88 - 100         1.65    16.81
  LONGEST_CONTINUOUS_SEGMENT:    13        89 - 101         1.99    19.48
  LCS_AVERAGE:      7.40

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    10        90 - 99          0.78    19.93
  LCS_AVERAGE:      4.17

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  122
LCS_GDT     E      14     E      14      0    3   16     0    1    4    4    6    9    9    9   11   17   19   23   25   30   32   37   43   48   52   58 
LCS_GDT     E      15     E      15      5    7   16     2    4    5    6    8    9   10   10   13   17   19   23   25   30   32   37   43   48   50   58 
LCS_GDT     S      16     S      16      5    7   16     4    4    5    6    8    9   10   11   14   17   19   23   25   30   32   37   43   48   50   58 
LCS_GDT     F      17     F      17      5    7   16     4    4    5    6    8    9   10   12   14   17   19   23   25   30   32   37   43   48   53   58 
LCS_GDT     L      18     L      18      5    7   16     4    4    5    7    8    8   10   12   14   15   18   23   25   30   31   36   43   46   50   60 
LCS_GDT     Y      19     Y      19      5    7   22     4    4    5    7    8    9   10   12   14   17   20   24   29   36   41   55   63   65   75   84 
LCS_GDT     F      20     F      20      4    7   22     3    4    5    6   11   17   21   27   31   39   44   53   63   70   74   81   84   89   94   96 
LCS_GDT     A      21     A      21      4    7   22     3    4    5    8   13   17   21   27   34   42   49   55   63   70   74   81   84   89   94   96 
LCS_GDT     Y      22     Y      22      4    7   22     3    4    4    6    7    8   12   18   22   28   35   45   54   65   74   81   84   89   94   96 
LCS_GDT     G      23     G      23      4    7   22     3    4    5    6    9   12   17   23   30   42   49   55   63   70   74   81   84   89   94   96 
LCS_GDT     S      24     S      24      4   11   22     3    6    9   11   13   21   26   33   38   44   49   55   62   70   74   81   84   89   94   96 
LCS_GDT     N      25     N      25      4   11   27     3    4    7   11   13   17   26   33   38   44   49   55   63   70   74   81   84   89   94   96 
LCS_GDT     L      26     L      26      4   11   27     3    7    9   11   13   17   21   27   35   42   49   55   63   70   74   81   84   89   94   96 
LCS_GDT     L      27     L      27      4   11   27     3    5    8   11   13   17   22   31   38   43   49   55   63   70   74   81   84   89   94   96 
LCS_GDT     T      28     T      28      7   11   27     6    7    9   11   13   15   21   27   31   40   48   55   63   70   74   81   84   89   94   96 
LCS_GDT     E      29     E      29      7   11   27     6    7    9   11   13   14   19   27   31   37   43   53   63   70   74   81   84   89   94   96 
LCS_GDT     R      30     R      30      7   11   27     6    7    9   11   13   14   18   23   29   36   48   55   63   70   74   81   84   89   94   96 
LCS_GDT     I      31     I      31      7   11   27     6    7    9   12   17   22   26   34   38   44   49   55   63   70   74   81   84   89   94   96 
LCS_GDT     H      32     H      32      7   11   27     6    7    9   12   17   22   26   34   38   44   49   55   63   70   74   81   84   89   94   96 
LCS_GDT     L      33     L      33      7   11   27     6    7    9   11   13   16   18   25   35   39   47   53   63   70   74   81   84   89   94   96 
LCS_GDT     R      34     R      34      7   11   27     3    4    8   11   13   13   16   24   33   37   43   47   54   66   71   76   83   89   94   96 
LCS_GDT     N      35     N      35      4    8   27     3    4    4   11   13   15   18   25   35   39   44   51   57   67   74   81   84   89   94   96 
LCS_GDT     P      36     P      36      4    8   27     3    4    5   11   13   16   19   25   35   39   45   52   63   70   74   81   84   89   94   96 
LCS_GDT     S      37     S      37      4    8   27     3    4    5   11   13   16   19   25   35   37   43   48   57   66   73   81   84   89   94   96 
LCS_GDT     A      38     A      38      5    8   27     3    4    5   11   14   16   20   26   35   39   45   51   63   70   74   81   84   89   94   96 
LCS_GDT     A      39     A      39      5   10   27     3    4    5    7   13   16   20   27   35   40   47   53   63   70   74   81   84   89   94   96 
LCS_GDT     F      40     F      40      5   10   27     3    4    5    8   11   18   25   34   38   43   49   55   63   70   74   81   84   89   94   96 
LCS_GDT     F      41     F      41      5   10   27     3    4    6    8   10   13   15   27   28   37   39   43   55   65   73   81   84   89   94   96 
LCS_GDT     C      42     C      42      5   10   27     4    5    8    9   10   12   13   15   20   25   29   32   40   43   50   55   67   73   87   92 
LCS_GDT     V      43     V      43      7   10   27     3    4    8    9   10   12   13   15   23   25   30   34   44   47   58   78   83   88   94   96 
LCS_GDT     A      44     A      44      7   10   27     3    6    8    9   10   13   19   27   31   37   39   44   61   70   74   81   84   89   94   96 
LCS_GDT     R      45     R      45      7   10   27     4    6    8    9   10   14   21   27   31   37   43   53   63   70   74   81   84   89   94   96 
LCS_GDT     L      46     L      46      7   10   27     4    6    8    9   13   17   21   27   31   39   44   53   63   70   74   81   84   89   94   96 
LCS_GDT     Q      47     Q      47      7   10   27     4    6    8    9   13   17   21   27   35   39   44   53   63   70   74   81   84   89   94   96 
LCS_GDT     D      48     D      48      7   10   27     4    6    8   11   13   17   21   27   35   39   44   53   63   70   74   81   84   89   94   96 
LCS_GDT     F      49     F      49      7    9   27     4    6    8    9   13   17   21   27   35   39   44   53   63   70   74   81   84   89   94   96 
LCS_GDT     K      50     K      50      7    9   27     4    4    8   11   13   17   21   27   35   39   44   53   63   70   74   81   84   89   94   96 
LCS_GDT     L      51     L      51      5    9   27     2    3    5   10   13   14   20   27   35   39   48   53   63   70   74   81   84   89   94   96 
LCS_GDT     D      52     D      52      5    7   20     2    3    5    6    6   11   15   22   26   35   45   52   62   70   74   81   84   89   94   96 
LCS_GDT     F      53     F      53      5    7   23     2    3    5    6    7    9   12   21   24   28   35   41   52   61   66   75   80   88   93   96 
LCS_GDT     G      54     G      54      4    7   23     0    3    5    6    7   10   13   14   17   21   25   35   47   55   62   65   71   76   83   88 
LCS_GDT     N      55     N      55      4    7   23     1    3    5    6    8   12   15   19   21   29   37   43   50   54   62   64   71   76   83   88 
LCS_GDT     S      56     S      56      4    7   23     3    3    5    6    8   11   15   19   19   23   28   37   42   51   56   62   64   70   75   80 
LCS_GDT     Q      57     Q      57      4    7   23     3    3    5    6    6   11   14   18   18   23   27   31   37   43   48   52   55   60   67   72 
LCS_GDT     G      58     G      58      3    7   23     3    3    5    6    6    9   11   13   18   22   24   26   30   40   44   52   54   58   62   66 
LCS_GDT     K      59     K      59      4    5   23     3    3    4    5    9   13   13   18   19   23   24   26   30   36   42   50   54   57   62   66 
LCS_GDT     T      60     T      60      4    5   23     3    3    6    9   11   13   14   18   19   23   27   31   37   44   48   52   55   59   67   72 
LCS_GDT     S      61     S      61      4    5   23     3    6    7    9   11   13   13   16   19   23   27   31   37   42   48   52   55   59   64   72 
LCS_GDT     Q      62     Q      62      4    5   23     3    6    7    9   11   13   13   16   19   23   27   31   37   43   48   52   55   59   64   72 
LCS_GDT     T      63     T      63      4    5   23     3    3    6    9   10   12   13   15   19   23   28   33   43   46   53   56   58   66   71   76 
LCS_GDT     W      64     W      64      4    5   29     3    3    6    9   10   12   16   19   28   35   41   47   54   58   62   66   74   80   83   91 
LCS_GDT     H      65     H      65      3    5   29     3    3    4    5    5    6    6    9   20   23   28   37   42   51   56   62   66   73   76   80 
LCS_GDT     G      66     G      66      3    6   29     3    3    6    9   10   12   14   18   19   23   28   34   39   45   54   59   64   68   74   77 
LCS_GDT     G      67     G      67      4    7   29     1    3    6    9   10   12   14   18   19   23   24   28   32   44   50   56   63   67   71   77 
LCS_GDT     I      68     I      68      4    7   30     1    3    4    4    8   11   13   18   19   23   28   34   42   51   56   62   66   73   76   82 
LCS_GDT     A      69     A      69      5    7   53     3    6    9   11   13   13   16   21   28   36   43   47   54   60   63   70   77   83   87   95 
LCS_GDT     T      70     T      70      5    9   53     3    4    8    9   13   13   16   21   28   35   41   47   54   60   63   69   77   83   87   95 
LCS_GDT     I      71     I      71      5    9   53     3    4    6   11   14   19   23   30   37   44   49   55   62   67   73   78   84   89   94   96 
LCS_GDT     F      72     F      72      5    9   53     3    6    7    9   14   19   25   31   37   44   49   55   62   67   73   78   84   89   94   96 
LCS_GDT     Q      73     Q      73      5    9   53     3    6    7   11   17   22   26   34   38   44   49   55   62   67   73   81   84   89   94   96 
LCS_GDT     S      74     S      74      5    9   53     3    6    7    9   11   16   22   34   38   43   49   55   59   65   72   75   81   86   93   96 
LCS_GDT     P      75     P      75      4    9   53     3    3    7   11   17   22   26   34   38   44   49   55   62   67   73   78   83   87   94   96 
LCS_GDT     G      76     G      76      5    9   53     3    4    5    6   11   18   26   34   38   44   49   55   62   67   73   78   84   88   94   96 
LCS_GDT     D      77     D      77      5    9   53     3    4    7   12   17   22   26   34   38   44   49   55   62   67   73   78   84   87   94   96 
LCS_GDT     E      78     E      78      5   10   53     3    4    7   12   17   22   26   34   38   44   49   55   62   67   73   78   84   89   94   96 
LCS_GDT     V      79     V      79      5   10   53     3    4    7   11   14   22   26   34   38   44   49   55   62   67   73   81   84   89   94   96 
LCS_GDT     W      80     W      80      5   10   53     3    4    7   11   17   22   26   34   38   44   49   55   62   70   74   81   84   89   94   96 
LCS_GDT     G      81     G      81      5   10   53     3    4    7   12   17   22   26   34   38   44   49   55   62   70   74   81   84   89   94   96 
LCS_GDT     V      82     V      82      5   10   53     4    4    6   11   14   22   26   34   38   44   49   55   63   70   74   81   84   89   94   96 
LCS_GDT     V      83     V      83      5   10   53     4    4    7   12   17   22   26   34   38   44   49   55   63   70   74   81   84   89   94   96 
LCS_GDT     W      84     W      84      5   10   53     4    4    6   11   13   18   26   30   38   44   49   55   63   70   74   81   84   89   94   96 
LCS_GDT     K      85     K      85      5   10   53     4    4    6   11   13   18   26   30   38   44   49   55   63   70   74   81   84   89   94   96 
LCS_GDT     M      86     M      86      4   10   53     3    3    5   10   13   15   17   27   31   37   39   52   59   69   74   81   84   89   94   96 
LCS_GDT     N      87     N      87      4   10   53     3    3    5   10   13   15   17   22   24   35   39   46   55   61   71   78   84   89   94   96 
LCS_GDT     K      88     K      88      4   13   53     4    4    8   10   16   22   26   34   38   44   49   55   63   70   74   81   84   89   94   96 
LCS_GDT     S      89     S      89      9   13   53     4    4    8   11   17   22   26   34   38   44   49   55   63   70   74   81   84   89   94   96 
LCS_GDT     N      90     N      90     10   13   53     8    8   10   12   17   22   26   34   38   44   49   55   63   70   74   81   84   89   94   96 
LCS_GDT     L      91     L      91     10   13   53     8    8   10   10   16   22   26   34   38   44   49   55   63   70   74   81   84   89   94   96 
LCS_GDT     N      92     N      92     10   13   53     8    8   10   12   17   22   26   34   38   44   49   55   63   70   74   81   84   89   94   96 
LCS_GDT     S      93     S      93     10   13   53     8    8   10   10   16   21   26   34   38   44   49   55   63   70   74   81   84   89   94   96 
LCS_GDT     L      94     L      94     10   13   53     8    8   10   10   14   17   21   34   38   44   49   55   63   70   74   81   84   89   94   96 
LCS_GDT     D      95     D      95     10   13   53     8    8   10   10   17   22   26   34   38   44   49   55   63   70   74   81   84   89   94   96 
LCS_GDT     E      96     E      96     10   13   53     8    8   10   10   14   19   25   34   38   44   49   55   63   70   74   81   84   89   94   96 
LCS_GDT     Q      97     Q      97     10   13   53     8    8   10   10   14   17   21   27   31   39   48   55   63   70   74   81   84   89   94   96 
LCS_GDT     E      98     E      98     10   13   53     3    4   10   10   14   17   21   27   31   37   43   52   63   70   74   81   84   89   94   96 
LCS_GDT     G      99     G      99     10   13   53     3    4   10   10   14   18   25   34   38   44   49   55   63   70   74   81   84   89   94   96 
LCS_GDT     V     100     V     100      4   13   53     3    4    5   10   11   18   25   34   38   44   49   55   63   70   74   81   84   89   94   96 
LCS_GDT     K     101     K     101      4   13   53     3    4    6    9   12   12   14   25   35   37   44   53   63   70   74   81   84   89   94   96 
LCS_GDT     S     102     S     102      4    6   53     3    4    4    6   10   11   13   19   22   24   36   42   53   59   68   76   83   89   94   96 
LCS_GDT     G     103     G     103      4    6   53     3    4    7    9   12   21   26   34   38   44   49   55   63   70   74   81   84   89   94   96 
LCS_GDT     M     104     M     104      4    6   53     3    3    4    6    9   16   19   25   35   42   49   55   63   70   74   81   84   89   94   96 
LCS_GDT     Y     105     Y     105      4    9   53     3    3    4    8   10   16   19   25   35   43   49   55   63   70   74   81   84   89   94   96 
LCS_GDT     V     106     V     106      4    9   53     3    4    5    7    9   16   18   22   35   38   46   55   62   70   74   81   84   89   94   96 
LCS_GDT     V     107     V     107      4    9   53     3    5    7   10   17   22   26   34   38   44   49   55   63   70   74   81   84   89   94   96 
LCS_GDT     I     108     I     108      4    9   53     1    4    7   11   14   17   20   26   35   44   49   55   63   70   74   81   84   89   94   96 
LCS_GDT     E     109     E     109      4    9   53     1    4    6    8   13   16   21   27   35   44   49   55   63   70   74   81   84   89   94   96 
LCS_GDT     V     110     V     110      4    9   53     1    4    6   11   14   17   21   27   37   44   49   55   63   70   74   81   84   89   94   96 
LCS_GDT     K     111     K     111      4    9   53     3    4    7   11   14   19   26   34   38   44   49   55   63   70   74   81   84   89   94   96 
LCS_GDT     V     112     V     112      5    9   53     3    4    6    8   13   18   25   34   38   44   49   55   62   67   73   81   84   89   94   96 
LCS_GDT     A     113     A     113      5    9   53     4    4    6    8   13   18   25   34   38   44   49   55   62   67   73   78   84   89   94   96 
LCS_GDT     T     114     T     114      5    9   53     4    5    7   10   17   22   26   34   38   44   49   55   62   67   73   81   84   89   94   96 
LCS_GDT     Q     115     Q     115      5    9   53     4    4    7   12   17   22   26   34   38   44   49   55   62   67   73   78   84   88   94   96 
LCS_GDT     E     116     E     116      5    9   53     4    4    7   12   17   22   26   34   38   44   49   55   62   67   73   78   84   88   94   96 
LCS_GDT     G     117     G     117      4    9   53     3    4    5   11   14   21   26   33   37   44   49   55   59   65   72   75   81   86   93   96 
LCS_GDT     K     118     K     118      4    9   53     3    4    7   12   17   22   26   34   38   44   49   55   62   67   73   81   84   89   94   96 
LCS_GDT     E     119     E     119      4    9   53     2    4    6    8   11   18   25   34   38   44   49   55   63   70   74   81   84   89   94   96 
LCS_GDT     I     120     I     120      4    9   53     2    4    4    8   11   14   19   25   35   39   44   53   63   70   74   81   84   89   94   96 
LCS_GDT     T     121     T     121      3    9   53     0    3    6   10   13   16   20   27   35   39   44   53   63   70   74   81   84   89   94   96 
LCS_GDT     C     122     C     122      3    9   53     3    3    6   10   11   14   19   25   35   37   44   53   63   70   74   81   84   89   94   96 
LCS_GDT     R     123     R     123      3    9   31     3    4    6   10   11   14   17   24   33   37   41   47   52   66   71   76   83   89   93   96 
LCS_GDT     S     124     S     124      3    9   31     3    4    6   10   11   14   16   24   35   37   44   53   63   70   74   81   84   89   94   96 
LCS_GDT     Y     125     Y     125      3    9   31     3    4    6   11   13   15   18   27   31   39   47   53   61   67   74   81   84   89   94   96 
LCS_GDT     L     126     L     126      3    9   31     3    3    7   12   17   22   26   34   38   44   49   55   63   70   74   81   84   89   94   96 
LCS_GDT     M     127     M     127      3    9   31     3    3    4    7   10   16   18   24   37   43   49   55   63   70   74   81   84   89   94   96 
LCS_GDT     T     128     T     128      4    9   31     3    4    6   10   10   14   16   22   26   35   43   52   62   70   74   81   84   89   94   96 
LCS_GDT     N     129     N     129      5    9   31     3    4    6   10   10   14   18   24   35   37   44   53   63   70   74   81   84   89   94   96 
LCS_GDT     Y     130     Y     130      5    8   23     3    4    5    7    9   14   19   27   35   39   44   53   63   70   74   81   84   89   94   96 
LCS_GDT     E     131     E     131      5    8   22     3    4    5    7    9   14   20   27   35   39   44   53   63   70   74   81   84   89   94   96 
LCS_GDT     S     132     S     132      5    8   17     3    4    5    6   14   17   21   27   35   39   44   53   63   70   74   81   84   89   94   96 
LCS_GDT     A     133     A     133      5    8   17     3    4    9   10   14   14   21   27   31   39   44   53   63   70   74   81   83   89   94   96 
LCS_GDT     P     134     P     134      3    8   17     0    3    3    8   13   14   20   27   33   39   44   53   63   70   74   81   83   89   94   96 
LCS_GDT     P     135     P     135      3    8   17     2    3    4    7   13   17   21   27   35   39   44   53   63   70   74   81   84   89   94   96 
LCS_AVERAGE  LCS_A:  14.05  (   4.17    7.40   30.58 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA      8      8     10     12     17     22     26     34     38     44     49     55     63     70     74     81     84     89     94     96 
GDT PERCENT_CA   6.56   6.56   8.20   9.84  13.93  18.03  21.31  27.87  31.15  36.07  40.16  45.08  51.64  57.38  60.66  66.39  68.85  72.95  77.05  78.69
GDT RMS_LOCAL    0.16   0.16   0.78   1.62   1.90   2.15   2.41   2.97   3.17   3.49   3.74   4.09   4.80   5.11   5.26   5.62   5.83   6.02   6.27   6.36
GDT RMS_ALL_CA  19.42  19.42  19.93  10.81  10.77  10.88  10.98  11.32  11.36  10.93  11.03  11.12  12.39  12.11  12.10  11.78  11.30  11.58  11.34  11.31

#      Molecule1      Molecule2       DISTANCE
LGA    E      14      E      14         29.749
LGA    E      15      E      15         29.389
LGA    S      16      S      16         25.880
LGA    F      17      F      17         21.312
LGA    L      18      L      18         19.822
LGA    Y      19      Y      19         13.841
LGA    F      20      F      20          8.123
LGA    A      21      A      21          5.423
LGA    Y      22      Y      22          9.583
LGA    G      23      G      23          7.401
LGA    S      24      S      24          4.890
LGA    N      25      N      25          4.543
LGA    L      26      L      26          6.122
LGA    L      27      L      27          5.208
LGA    T      28      T      28          6.641
LGA    E      29      E      29          7.847
LGA    R      30      R      30          7.021
LGA    I      31      I      31          3.422
LGA    H      32      H      32          3.460
LGA    L      33      L      33          9.011
LGA    R      34      R      34         10.797
LGA    N      35      N      35         10.233
LGA    P      36      P      36          9.312
LGA    S      37      S      37          9.834
LGA    A      38      A      38          7.093
LGA    A      39      A      39          6.022
LGA    F      40      F      40          4.505
LGA    F      41      F      41          7.949
LGA    C      42      C      42         11.570
LGA    V      43      V      43          9.649
LGA    A      44      A      44         10.370
LGA    R      45      R      45         11.990
LGA    L      46      L      46         12.712
LGA    Q      47      Q      47         14.121
LGA    D      48      D      48         15.914
LGA    F      49      F      49         12.598
LGA    K      50      K      50         12.959
LGA    L      51      L      51          9.136
LGA    D      52      D      52          9.509
LGA    F      53      F      53         11.469
LGA    G      54      G      54         14.047
LGA    N      55      N      55         15.801
LGA    S      56      S      56         18.271
LGA    Q      57      Q      57         24.340
LGA    G      58      G      58         25.144
LGA    K      59      K      59         26.921
LGA    T      60      T      60         25.541
LGA    S      61      S      61         24.608
LGA    Q      62      Q      62         26.641
LGA    T      63      T      63         20.079
LGA    W      64      W      64         14.362
LGA    H      65      H      65         17.271
LGA    G      66      G      66         20.018
LGA    G      67      G      67         18.683
LGA    I      68      I      68         14.609
LGA    A      69      A      69          9.953
LGA    T      70      T      70         10.055
LGA    I      71      I      71          6.246
LGA    F      72      F      72          5.601
LGA    Q      73      Q      73          3.020
LGA    S      74      S      74          3.762
LGA    P      75      P      75          1.795
LGA    G      76      G      76          3.720
LGA    D      77      D      77          1.424
LGA    E      78      E      78          1.662
LGA    V      79      V      79          3.832
LGA    W      80      W      80          2.332
LGA    G      81      G      81          2.488
LGA    V      82      V      82          3.434
LGA    V      83      V      83          0.991
LGA    W      84      W      84          4.757
LGA    K      85      K      85          4.503
LGA    M      86      M      86          7.996
LGA    N      87      N      87          8.957
LGA    K      88      K      88          3.543
LGA    S      89      S      89          3.134
LGA    N      90      N      90          1.177
LGA    L      91      L      91          3.649
LGA    N      92      N      92          1.994
LGA    S      93      S      93          2.054
LGA    L      94      L      94          3.750
LGA    D      95      D      95          2.421
LGA    E      96      E      96          3.101
LGA    Q      97      Q      97          6.258
LGA    E      98      E      98          7.563
LGA    G      99      G      99          3.512
LGA    V     100      V     100          3.344
LGA    K     101      K     101          6.284
LGA    S     102      S     102          7.547
LGA    G     103      G     103          3.162
LGA    M     104      M     104          5.791
LGA    Y     105      Y     105          6.534
LGA    V     106      V     106          6.800
LGA    V     107      V     107          2.857
LGA    I     108      I     108          5.871
LGA    E     109      E     109          5.971
LGA    V     110      V     110          5.380
LGA    K     111      K     111          3.245
LGA    V     112      V     112          3.774
LGA    A     113      A     113          3.940
LGA    T     114      T     114          2.031
LGA    Q     115      Q     115          3.634
LGA    E     116      E     116          3.917
LGA    G     117      G     117          4.878
LGA    K     118      K     118          3.002
LGA    E     119      E     119          4.554
LGA    I     120      I     120          9.083
LGA    T     121      T     121          9.938
LGA    C     122      C     122          9.658
LGA    R     123      R     123         11.167
LGA    S     124      S     124          7.486
LGA    Y     125      Y     125          6.578
LGA    L     126      L     126          0.914
LGA    M     127      M     127          5.577
LGA    T     128      T     128          9.459
LGA    N     129      N     129          9.888
LGA    Y     130      Y     130         10.744
LGA    E     131      E     131         12.897
LGA    S     132      S     132         15.912
LGA    A     133      A     133         17.075
LGA    P     134      P     134         16.702
LGA    P     135      P     135         12.955

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  122  122    4.0     34    2.97    27.664    22.102     1.107

LGA_LOCAL      RMSD =  2.970  Number of atoms =   34  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 11.497  Number of atoms =  122 
Std_ALL_ATOMS  RMSD = 10.171  (standard rmsd on all 122 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.321216 * X  +   0.121469 * Y  +  -0.939183 * Z  +  -2.808461
  Y_new =   0.608259 * X  +   0.786588 * Y  +  -0.106301 * Z  +  93.715393
  Z_new =   0.725838 * X  +  -0.605412 * Y  +  -0.326550 * Z  +   5.405164 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -2.065452    1.076140  [ DEG:  -118.3417     61.6583 ]
  Theta =  -0.812252   -2.329340  [ DEG:   -46.5386   -133.4614 ]
  Phi   =   2.056664   -1.084929  [ DEG:   117.8382    -62.1618 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0342TS393_1-D1                               
REMARK     2: T0342_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0342TS393_1-D1.T0342_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  122  122   4.0   34   2.97  22.102    10.17
REMARK  ---------------------------------------------------------- 
MOLECULE T0342TS393_1-D1
PFRMAT TS
TARGET T0342
MODEL 1
PARENT N/A
ATOM     14  CA  GLU    14      -5.908 107.597  -3.348  1.00 25.00           C
ATOM     15  CA  GLU    15      -5.086 105.578  -0.184  1.00 25.00           C
ATOM     16  CA  SER    16      -4.383 102.699   2.247  1.00 25.00           C
ATOM     17  CA  PHE    17      -3.528  99.757   4.467  1.00 25.00           C
ATOM     18  CA  LEU    18      -1.767  98.268   7.499  1.00 25.00           C
ATOM     19  CA  TYR    19       0.201  95.006   7.882  1.00 25.00           C
ATOM     20  CA  PHE    20       1.620  92.187   5.769  1.00 25.00           C
ATOM     21  CA  ALA    21      -0.725  89.276   4.886  1.00 25.00           C
ATOM     22  CA  TYR    22      -2.648  86.271   3.526  1.00 25.00           C
ATOM     23  CA  GLY    23      -0.624  83.821   5.611  1.00 25.00           C
ATOM     24  CA  SER    24       2.975  83.770   6.688  1.00 25.00           C
ATOM     25  CA  ASN    25       3.228  81.149   9.381  1.00 25.00           C
ATOM     26  CA  LEU    26      -0.264  82.092  10.564  1.00 25.00           C
ATOM     27  CA  LEU    27      -1.135  78.442   9.936  1.00 25.00           C
ATOM     28  CA  THR    28      -3.950  78.379   7.452  1.00 25.00           C
ATOM     29  CA  GLU    29      -5.480  78.202   3.946  1.00 25.00           C
ATOM     30  CA  ARG    30      -2.600  80.309   2.556  1.00 25.00           C
ATOM     31  CA  ILE    31      -0.059  77.997   4.249  1.00 25.00           C
ATOM     32  CA  HIS    32      -1.811  74.936   2.755  1.00 25.00           C
ATOM     33  CA  LEU    33      -1.732  76.554  -0.715  1.00 25.00           C
ATOM     34  CA  ARG    34       2.003  77.297  -0.311  1.00 25.00           C
ATOM     35  CA  ASN    35       3.617  76.461  -3.700  1.00 25.00           C
ATOM     36  CA  PRO    36       3.906  72.969  -2.152  1.00 25.00           C
ATOM     37  CA  SER    37       7.342  74.312  -1.058  1.00 25.00           C
ATOM     38  CA  ALA    38       5.832  74.988   2.336  1.00 25.00           C
ATOM     39  CA  ALA    39       8.051  78.140   2.547  1.00 25.00           C
ATOM     40  CA  PHE    40       5.167  80.381   3.718  1.00 25.00           C
ATOM     41  CA  PHE    41       3.130  82.832   1.746  1.00 25.00           C
ATOM     42  CA  CYS    42       1.597  86.346   1.425  1.00 25.00           C
ATOM     43  CA  VAL    43       4.621  88.272   2.691  1.00 25.00           C
ATOM     44  CA  ALA    44       4.966  89.249   6.352  1.00 25.00           C
ATOM     45  CA  ARG    45       5.030  91.460   9.375  1.00 25.00           C
ATOM     46  CA  LEU    46       4.348  94.933  10.717  1.00 25.00           C
ATOM     47  CA  GLN    47       6.795  97.120  12.695  1.00 25.00           C
ATOM     48  CA  ASP    48       5.185  99.075  15.557  1.00 25.00           C
ATOM     49  CA  PHE    49       2.188  99.076  13.122  1.00 25.00           C
ATOM     50  CA  LYS    50      -1.105  97.289  13.829  1.00 25.00           C
ATOM     51  CA  LEU    51      -0.196  93.747  12.776  1.00 25.00           C
ATOM     52  CA  ASP    52       0.300  90.458  10.974  1.00 25.00           C
ATOM     53  CA  PHE    53       0.474  87.031   9.299  1.00 25.00           C
ATOM     54  CA  GLY    54       3.843  86.674  10.997  1.00 25.00           C
ATOM     55  CA  ASN    55       2.082  85.930  14.306  1.00 25.00           C
ATOM     56  CA  SER    56       5.026  87.676  16.071  1.00 25.00           C
ATOM     57  CA  GLN    57       7.337  87.904  19.127  1.00 25.00           C
ATOM     58  CA  GLY    58       9.940  86.758  16.585  1.00 25.00           C
ATOM     59  CA  LYS    59      12.379  87.037  19.541  1.00 25.00           C
ATOM     60  CA  THR    60      11.901  83.265  19.638  1.00 25.00           C
ATOM     61  CA  SER    61      12.118  81.461  16.287  1.00 25.00           C
ATOM     62  CA  GLN    62      11.113  78.087  17.650  1.00 25.00           C
ATOM     63  CA  THR    63       7.604  79.245  18.360  1.00 25.00           C
ATOM     64  CA  TRP    64       4.549  80.436  16.458  1.00 25.00           C
ATOM     65  CA  HIS    65       5.904  82.665  13.735  1.00 25.00           C
ATOM     66  CA  GLY    66       7.440  79.709  11.817  1.00 25.00           C
ATOM     67  CA  GLY    67       8.411  82.358   9.215  1.00 25.00           C
ATOM     68  CA  ILE    68       7.999  85.072   6.581  1.00 25.00           C
ATOM     69  CA  ALA    69       8.922  87.826   9.080  1.00 25.00           C
ATOM     70  CA  THR    70       9.873  91.044  10.885  1.00 25.00           C
ATOM     71  CA  ILE    71       9.317  94.197   8.881  1.00 25.00           C
ATOM     72  CA  PHE    72       9.719  97.295   6.625  1.00 25.00           C
ATOM     73  CA  GLN    73      10.281 100.243   4.300  1.00 25.00           C
ATOM     74  CA  SER    74      12.885 101.855   2.037  1.00 25.00           C
ATOM     75  CA  PRO    75      15.210 104.871   2.632  1.00 25.00           C
ATOM     76  CA  GLY    76      15.227 103.624   6.234  1.00 25.00           C
ATOM     77  CA  ASP    77      16.883 100.298   6.968  1.00 25.00           C
ATOM     78  CA  GLU    78      16.242  96.566   6.810  1.00 25.00           C
ATOM     79  CA  VAL    79      14.865  93.690   8.862  1.00 25.00           C
ATOM     80  CA  TRP    80      13.838  90.188   7.870  1.00 25.00           C
ATOM     81  CA  GLY    81      11.938  88.455   5.054  1.00 25.00           C
ATOM     82  CA  VAL    82       9.452  87.504   2.376  1.00 25.00           C
ATOM     83  CA  VAL    83       7.627  84.749   0.395  1.00 25.00           C
ATOM     84  CA  TRP    84       5.335  86.412  -2.124  1.00 25.00           C
ATOM     85  CA  LYS    85       2.245  84.385  -3.169  1.00 25.00           C
ATOM     86  CA  MET    86       0.868  87.969  -3.362  1.00 25.00           C
ATOM     87  CA  ASN    87      -2.123  88.301  -5.636  1.00 25.00           C
ATOM     88  CA  LYS    88      -2.524  84.745  -7.006  1.00 25.00           C
ATOM     89  CA  SER    89      -6.176  84.260  -8.050  1.00 25.00           C
ATOM     90  CA  ASN    90      -6.934  82.566  -4.700  1.00 25.00           C
ATOM     91  CA  LEU    91      -5.276  85.467  -2.829  1.00 25.00           C
ATOM     92  CA  ASN    92      -7.351  87.981  -4.838  1.00 25.00           C
ATOM     93  CA  SER    93     -10.547  86.035  -4.021  1.00 25.00           C
ATOM     94  CA  LEU    94      -9.619  86.024  -0.306  1.00 25.00           C
ATOM     95  CA  ASP    95      -9.003  89.802  -0.423  1.00 25.00           C
ATOM     96  CA  GLU    96     -12.402  90.328  -2.108  1.00 25.00           C
ATOM     97  CA  GLN    97     -14.095  88.195   0.585  1.00 25.00           C
ATOM     98  CA  GLU    98     -13.821  91.409   2.539  1.00 25.00           C
ATOM     99  CA  GLY    99     -11.860  94.025   0.630  1.00 25.00           C
ATOM    100  CA  VAL   100     -10.279  95.051  -2.693  1.00 25.00           C
ATOM    101  CA  LYS   101      -6.537  94.872  -3.518  1.00 25.00           C
ATOM    102  CA  SER   102      -6.224  98.000  -1.331  1.00 25.00           C
ATOM    103  CA  GLY   103      -7.728  97.301   2.097  1.00 25.00           C
ATOM    104  CA  MET   104      -6.844  93.663   1.341  1.00 25.00           C
ATOM    105  CA  TYR   105      -4.506  90.640   1.890  1.00 25.00           C
ATOM    106  CA  VAL   106      -2.333  91.483  -1.137  1.00 25.00           C
ATOM    107  CA  VAL   107      -0.012  94.491  -1.559  1.00 25.00           C
ATOM    108  CA  ILE   108       2.504  92.449   0.432  1.00 25.00           C
ATOM    109  CA  GLU   109       5.809  94.204  -0.249  1.00 25.00           C
ATOM    110  CA  VAL   110       7.319  90.774  -0.695  1.00 25.00           C
ATOM    111  CA  LYS   111      10.214  91.277  -3.040  1.00 25.00           C
ATOM    112  CA  VAL   112      11.448  87.711  -2.272  1.00 25.00           C
ATOM    113  CA  ALA   113      14.681  85.789  -2.289  1.00 25.00           C
ATOM    114  CA  THR   114      18.153  84.271  -1.999  1.00 25.00           C
ATOM    115  CA  GLN   115      21.133  86.641  -2.294  1.00 25.00           C
ATOM    116  CA  GLU   116      21.969  86.026  -5.884  1.00 25.00           C
ATOM    117  CA  GLY   117      20.691  88.371  -8.558  1.00 25.00           C
ATOM    118  CA  LYS   118      17.957  89.545  -6.224  1.00 25.00           C
ATOM    119  CA  GLU   119      16.814  90.368  -2.658  1.00 25.00           C
ATOM    120  CA  ILE   120      16.412  89.263   0.948  1.00 25.00           C
ATOM    121  CA  THR   121      13.217  91.325   1.045  1.00 25.00           C
ATOM    122  CA  CYS   122      10.753  94.092   1.617  1.00 25.00           C
ATOM    123  CA  ARG   123       8.983  92.174   4.318  1.00 25.00           C
ATOM    124  CA  SER   124       5.984  94.456   4.813  1.00 25.00           C
ATOM    125  CA  TYR   125       3.732  97.483   5.284  1.00 25.00           C
ATOM    126  CA  LEU   126       0.843  96.561   2.971  1.00 25.00           C
ATOM    127  CA  MET   127      -2.242  94.475   3.394  1.00 25.00           C
ATOM    128  CA  THR   128      -5.071  94.803   5.901  1.00 25.00           C
ATOM    129  CA  ASN   129      -8.461  96.041   7.215  1.00 25.00           C
ATOM    130  CA  TYR   130     -11.105  95.993  10.009  1.00 25.00           C
ATOM    131  CA  GLU   131     -12.938  96.593  13.286  1.00 25.00           C
ATOM    132  CA  SER   132     -14.236  96.890  16.846  1.00 25.00           C
ATOM    133  CA  ALA   133     -16.692  94.793  18.800  1.00 25.00           C
ATOM    134  CA  PRO   134     -14.462  91.898  17.776  1.00 25.00           C
ATOM    135  CA  PRO   135     -11.852  89.270  18.639  1.00 25.00           C
TER
END
