
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  122 (  122),  selected  122 , name T0342TS393_3-D1
# Molecule2: number of CA atoms  122 (  967),  selected  122 , name T0342_D1.pdb
# PARAMETERS: T0342TS393_3-D1.T0342_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    31       100 - 130         4.88    21.72
  LCS_AVERAGE:     18.83

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    11        59 - 69          1.69    25.48
  LONGEST_CONTINUOUS_SEGMENT:    11        60 - 70          1.98    24.53
  LONGEST_CONTINUOUS_SEGMENT:    11        87 - 97          1.30    21.59
  LCS_AVERAGE:      6.75

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:     9        89 - 97          0.89    21.37
  LCS_AVERAGE:      4.06

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  122
LCS_GDT     E      14     E      14      0    4   20     0    1    5    6   10   20   23   27   29   32   37   41   44   49   55   59   63   65   68   74 
LCS_GDT     E      15     E      15      5    6   20     2    3    5    6   14   21   24   27   29   32   37   41   44   49   55   59   63   65   68   74 
LCS_GDT     S      16     S      16      5    6   20     3    4    5   11   16   21   24   27   29   32   37   41   44   49   55   59   63   65   68   74 
LCS_GDT     F      17     F      17      5    6   20     3    4    8   12   16   21   24   27   29   32   37   41   44   49   55   59   63   65   68   74 
LCS_GDT     L      18     L      18      5    6   20     4    5    8   12   16   21   24   27   29   32   37   41   44   49   55   59   63   65   68   74 
LCS_GDT     Y      19     Y      19      5    6   20     3    4    6    8   16   21   24   27   29   32   37   41   44   49   55   59   63   65   68   74 
LCS_GDT     F      20     F      20      5    7   20     3    4    5    7    9   14   18   21   21   26   33   38   44   49   55   59   63   65   68   74 
LCS_GDT     A      21     A      21      5    7   20     3    4    5    7   10   14   18   21   22   26   33   39   44   49   55   59   63   65   68   74 
LCS_GDT     Y      22     Y      22      5    7   20     3    4    5    7    9   12   18   21   21   26   33   39   44   49   55   59   63   65   68   74 
LCS_GDT     G      23     G      23      5    7   20     3    4    5    7    9   14   18   21   21   25   29   37   44   49   55   59   63   65   68   74 
LCS_GDT     S      24     S      24      5    7   20     3    3    5    6    9   13   18   21   21   26   32   39   44   49   55   59   63   65   68   74 
LCS_GDT     N      25     N      25      5    7   20     3    4    5    7   10   13   18   21   21   25   33   39   44   49   55   59   63   65   68   74 
LCS_GDT     L      26     L      26      4    7   20     3    4    5    7   10   13   18   21   21   25   32   34   38   43   47   54   60   63   68   74 
LCS_GDT     L      27     L      27      4    8   20     3    4    4    6   10   12   17   21   21   25   32   34   38   43   46   51   58   63   68   74 
LCS_GDT     T      28     T      28      7    8   20     6    7    7    8    8   11   15   18   22   26   33   39   44   49   55   59   63   65   68   74 
LCS_GDT     E      29     E      29      7    8   20     6    7    7    8    8   11   12   17   22   26   33   37   43   49   55   59   63   65   68   74 
LCS_GDT     R      30     R      30      7    8   20     6    7    7    8    9   11   12   13   18   21   27   33   38   45   51   59   63   65   68   74 
LCS_GDT     I      31     I      31      7    8   20     6    7    7   12   16   21   24   27   29   32   37   41   44   49   55   59   63   65   68   74 
LCS_GDT     H      32     H      32      7    8   20     6    7    8   12   16   21   24   27   29   32   37   41   44   49   55   59   63   65   68   74 
LCS_GDT     L      33     L      33      7    8   20     6    7    7    8   10   13   15   21   23   28   33   40   44   45   51   57   63   65   68   73 
LCS_GDT     R      34     R      34      7    8   18     3    4    7    8    9   11   14   19   22   27   32   36   40   44   49   52   56   60   63   69 
LCS_GDT     N      35     N      35      4    8   18     3    4    4    6    8   11   13   16   22   25   32   36   40   44   49   52   54   60   63   69 
LCS_GDT     P      36     P      36      4    8   18     3    4    4    6    7    8   13   19   23   28   33   36   40   45   49   52   56   60   68   73 
LCS_GDT     S      37     S      37      5    8   18     3    5    5    6   16   21   24   27   29   32   37   41   44   49   55   59   63   65   68   74 
LCS_GDT     A      38     A      38      5    8   18     3    5    5   12   16   21   24   27   29   32   37   41   44   49   55   59   63   65   68   74 
LCS_GDT     A      39     A      39      5    8   18     3    5    5    6    7   11   15   18   27   31   36   39   44   49   55   59   63   65   68   74 
LCS_GDT     F      40     F      40      5    8   18     3    5    5    6    9   11   12   14   17   22   27   33   38   43   50   56   62   65   68   74 
LCS_GDT     F      41     F      41      5    8   18     3    5    5    6    7    9   10   13   17   20   24   27   34   38   47   51   55   60   65   72 
LCS_GDT     C      42     C      42      4    8   18     3    3    4    6    6    9   10   12   16   20   22   27   30   37   41   48   55   60   64   69 
LCS_GDT     V      43     V      43      4    7   18     3    3    4    6   10   10   11   12   14   17   20   25   30   37   47   51   55   62   66   74 
LCS_GDT     A      44     A      44      3    7   14     3    3    4    6    7    7   10   15   17   19   26   31   35   42   46   54   60   63   68   74 
LCS_GDT     R      45     R      45      3    7   13     3    3    4    6    9   10   12   15   19   25   32   36   38   43   46   52   56   63   68   74 
LCS_GDT     L      46     L      46      3    7   13     4    4    5    6    9   14   18   21   21   24   32   34   37   40   46   48   53   59   64   68 
LCS_GDT     Q      47     Q      47      3    7   13     4    4    4    6    9   14   18   21   21   22   27   34   37   39   44   47   51   55   61   65 
LCS_GDT     D      48     D      48      3    6   13     4    4    4    6    8   14   16   21   21   24   26   34   37   39   41   43   51   55   61   65 
LCS_GDT     F      49     F      49      3    6   13     0    3    3    6    9   14   18   21   21   25   32   34   37   41   46   49   58   62   67   72 
LCS_GDT     K      50     K      50      4    6   22     2    3    5    7    9   11   14   17   21   25   32   36   39   44   50   54   61   64   68   74 
LCS_GDT     L      51     L      51      4    6   22     3    3    5    6    9   11   14   17   21   25   32   36   39   44   51   57   63   65   68   74 
LCS_GDT     D      52     D      52      4    6   22     3    3    5    6    8   10   12   14   18   22   27   31   32   39   46   48   53   60   68   72 
LCS_GDT     F      53     F      53      4    6   22     3    3    5    6    8   10   13   14   16   20   20   26   30   34   37   42   48   57   64   68 
LCS_GDT     G      54     G      54      5    6   22     2    3    5    6    8   10   13   14   15   18   20   23   24   24   29   30   36   39   48   52 
LCS_GDT     N      55     N      55      5    6   22     2    3    5    5    8   10   13   14   15   18   20   23   24   24   25   27   34   38   44   53 
LCS_GDT     S      56     S      56      5    6   22     3    3    5    5    6    8    9   10   10   14   19   23   24   24   24   26   28   32   38   45 
LCS_GDT     Q      57     Q      57      5    6   22     3    3    5    5    6    6    6   10   10   14   19   23   24   24   24   26   28   32   37   45 
LCS_GDT     G      58     G      58      5    7   22     3    3    5    5    8   12   13   14   16   18   20   23   24   24   24   26   28   34   40   46 
LCS_GDT     K      59     K      59      3   11   22     3    3    5    8   11   12   13   14   16   18   20   23   24   25   27   31   36   42   47   53 
LCS_GDT     T      60     T      60      3   11   22     3    3    8    8   11   12   13   14   16   18   24   27   32   35   42   51   55   60   62   68 
LCS_GDT     S      61     S      61      4   11   22     4    4    5    7   11   12   13   19   22   26   32   36   38   42   49   53   59   65   68   73 
LCS_GDT     Q      62     Q      62      4   11   22     4    5    8    8   11   13   15   19   23   28   33   37   40   43   49   56   62   65   68   73 
LCS_GDT     T      63     T      63      4   11   22     4    4    5    8   11   12   17   22   26   29   37   41   44   45   55   58   63   65   68   73 
LCS_GDT     W      64     W      64      6   11   22     4    4    7   11   16   21   24   27   29   32   37   41   44   49   55   59   63   65   68   74 
LCS_GDT     H      65     H      65      6   11   22     5    5    8    8   11   12   13   17   19   26   31   36   40   45   51   59   63   65   68   73 
LCS_GDT     G      66     G      66      6   11   22     5    5    8    8   11   12   13   14   17   19   28   36   40   44   51   57   63   65   68   73 
LCS_GDT     G      67     G      67      6   11   22     5    5    8    8   11   12   13   15   19   22   31   36   40   44   51   57   63   65   68   73 
LCS_GDT     I      68     I      68      6   11   22     5    5    8   12   16   21   24   27   29   32   37   41   44   49   55   59   63   65   68   74 
LCS_GDT     A      69     A      69      6   11   22     5    5    8   12   16   21   24   27   29   32   37   41   44   49   55   59   63   65   68   74 
LCS_GDT     T      70     T      70      4   11   22     3    5    8   12   16   21   24   27   29   32   37   41   44   49   55   59   63   65   68   74 
LCS_GDT     I      71     I      71      5   10   22     3    5    7    9   16   21   24   27   29   32   37   41   44   49   55   59   63   65   68   74 
LCS_GDT     F      72     F      72      5    9   22     3    4    7    8   10   11   13   19   23   28   37   41   44   49   55   59   63   65   68   74 
LCS_GDT     Q      73     Q      73      5    9   22     3    5    7    8   11   13   16   21   26   32   37   41   44   49   55   59   63   65   68   74 
LCS_GDT     S      74     S      74      5    9   22     3    5    6    8   11   13   16   21   24   28   33   41   44   49   55   59   63   65   68   74 
LCS_GDT     P      75     P      75      5    9   22     3    7    7    8   10   13   16   21   24   28   35   41   44   49   55   59   63   65   68   74 
LCS_GDT     G      76     G      76      4    9   22     3    3    4    5   10   13   16   21   24   28   33   41   44   49   55   59   63   65   68   74 
LCS_GDT     D      77     D      77      4   10   22     3    3    5    8   11   13   16   19   23   28   33   36   39   43   52   58   63   65   68   72 
LCS_GDT     E      78     E      78      4   10   22     3    4    8    8   11   13   16   21   23   28   33   38   44   48   55   59   63   65   68   73 
LCS_GDT     V      79     V      79      4   10   21     3    4    6    8   11   13   16   21   25   31   37   41   44   49   55   59   63   65   68   74 
LCS_GDT     W      80     W      80      5   10   21     3    4    6    8   10   11   16   21   26   32   37   41   44   49   55   59   63   65   68   74 
LCS_GDT     G      81     G      81      5   10   21     4    4    6    8   10   10   13   18   24   27   31   39   44   49   55   59   63   65   68   74 
LCS_GDT     V      82     V      82      5   10   21     4    4    6    8   10   10   12   14   17   20   27   32   41   48   52   56   60   62   67   74 
LCS_GDT     V      83     V      83      5   10   21     4    4    6    8   10   11   12   14   17   19   21   26   32   38   47   49   51   53   58   70 
LCS_GDT     W      84     W      84      5   10   21     4    4    6    8   10   12   13   15   17   19   24   30   33   40   47   49   51   53   58   66 
LCS_GDT     K      85     K      85      5   10   21     3    3    6    8   10   12   13   15   17   19   21   25   30   37   43   47   49   51   53   54 
LCS_GDT     M      86     M      86      3   10   21     3    3    3    4    9   12   13   15   17   19   21   26   31   34   41   45   49   51   52   54 
LCS_GDT     N      87     N      87      5   11   21     3    4    7   11   11   12   13   15   17   19   20   22   24   25   27   33   43   48   49   52 
LCS_GDT     K      88     K      88      5   11   21     4    4    8   11   11   12   13   15   17   19   20   22   24   25   28   33   42   48   49   52 
LCS_GDT     S      89     S      89      9   11   21     4    4    8   11   11   12   13   15   17   19   20   22   24   25   28   31   34   41   46   50 
LCS_GDT     N      90     N      90      9   11   21     8    8    8   11   11   12   13   15   17   19   20   22   24   25   31   39   45   51   52   57 
LCS_GDT     L      91     L      91      9   11   21     8    8    8   11   11   12   13   15   17   19   24   28   33   40   47   51   55   59   64   68 
LCS_GDT     N      92     N      92      9   11   21     8    8    8   11   11   12   13   15   17   20   25   30   36   41   47   52   56   60   64   70 
LCS_GDT     S      93     S      93      9   11   22     8    8    8   11   11   12   13   15   17   20   27   33   36   41   47   52   58   61   66   72 
LCS_GDT     L      94     L      94      9   11   22     8    8    8   11   11   12   13   15   18   25   31   38   44   49   55   59   63   65   68   74 
LCS_GDT     D      95     D      95      9   11   22     8    8    8   11   11   12   15   17   18   21   31   33   40   45   55   57   63   65   68   74 
LCS_GDT     E      96     E      96      9   11   22     8    8    8   11   11   12   13   15   17   26   31   38   44   49   55   59   63   65   68   74 
LCS_GDT     Q      97     Q      97      9   11   22     8    8    8   11   11   12   14   16   19   25   33   37   44   49   55   59   63   65   68   74 
LCS_GDT     E      98     E      98      3    5   22     3    3    4    4    6    7   10   12   13   17   23   25   33   38   51   54   60   63   68   74 
LCS_GDT     G      99     G      99      3    5   28     3    3    4    4    7    8   12   13   19   25   33   39   44   49   55   59   63   65   68   74 
LCS_GDT     V     100     V     100      5    5   31     3    5    5    6    8   10   16   21   27   32   36   41   44   49   55   59   63   65   68   74 
LCS_GDT     K     101     K     101      5    5   31     3    5    5    6   11   13   16   21   23   26   33   37   43   49   55   59   63   65   68   74 
LCS_GDT     S     102     S     102      5    5   31     3    5    5    6    8   10   17   21   23   26   34   37   43   49   55   59   63   65   68   74 
LCS_GDT     G     103     G     103      5    5   31     3    5    5    6    8   21   24   27   29   32   37   41   44   49   55   59   63   65   68   74 
LCS_GDT     M     104     M     104      5    5   31     4    5    5    6    8   11   22   27   29   32   37   41   44   49   55   59   63   65   68   74 
LCS_GDT     Y     105     Y     105      6    9   31     4    5    8   12   16   21   24   27   29   32   37   41   44   49   55   59   63   65   68   74 
LCS_GDT     V     106     V     106      6    9   31     3    5    6    7   11   21   24   27   29   32   37   41   44   49   55   59   63   65   68   74 
LCS_GDT     V     107     V     107      6    9   31     3    5    6    7   16   21   24   27   29   32   37   41   44   49   55   59   63   65   68   74 
LCS_GDT     I     108     I     108      6    9   31     3    5    8   12   16   21   24   27   29   32   37   41   44   49   55   59   63   65   68   74 
LCS_GDT     E     109     E     109      6    9   31     3    5    7   11   16   21   24   27   29   32   37   41   44   49   55   59   63   65   68   74 
LCS_GDT     V     110     V     110      6    9   31     3    5    6    8   10   14   17   21   25   32   37   41   44   49   55   59   63   65   68   74 
LCS_GDT     K     111     K     111      4    9   31     3    3    5    7   11   14   21   25   29   32   37   41   44   49   55   59   63   65   68   74 
LCS_GDT     V     112     V     112      4    9   31     3    4    5    8   11   14   17   21   29   32   37   41   44   49   55   59   63   65   68   74 
LCS_GDT     A     113     A     113      4    9   31     3    4    5    8   11   18   23   27   29   32   37   41   44   49   55   59   63   65   68   74 
LCS_GDT     T     114     T     114      4    9   31     3    4    7    9   14   21   24   27   29   32   37   41   44   49   55   59   63   65   68   74 
LCS_GDT     Q     115     Q     115      4    9   31     4    5    8   12   16   21   24   27   29   32   37   41   44   49   55   59   63   65   68   74 
LCS_GDT     E     116     E     116      3    8   31     3    3    5    7    8   15   24   27   29   32   37   41   44   49   55   59   63   65   68   74 
LCS_GDT     G     117     G     117      4    7   31     3    4    4    6    8   10   12   16   21   26   32   36   42   49   53   58   62   65   68   74 
LCS_GDT     K     118     K     118      4    7   31     3    4    5    7    8   10   12   15   20   23   29   34   41   48   52   56   60   63   67   74 
LCS_GDT     E     119     E     119      4    7   31     3    4    5    7    8   10   13   15   21   25   30   34   41   49   52   56   60   63   68   74 
LCS_GDT     I     120     I     120      4    7   31     3    4    5    6    8   10   12   15   18   22   24   28   32   38   47   49   57   62   67   70 
LCS_GDT     T     121     T     121      4    7   31     1    3    4    6    8   10   12   15   18   22   25   29   33   38   47   49   56   62   65   70 
LCS_GDT     C     122     C     122      4    7   31     1    3    4    6    8   10   12   14   20   22   27   31   38   42   50   54   60   63   68   74 
LCS_GDT     R     123     R     123      4    7   31     0    3    4    6    8   11   13   14   20   22   26   31   38   43   52   56   59   64   68   74 
LCS_GDT     S     124     S     124      4    7   31     3    4    5   12   16   21   24   27   29   32   37   41   44   49   55   59   63   65   68   74 
LCS_GDT     Y     125     Y     125      4    7   31     4    4    8   12   16   21   24   27   29   32   37   41   44   49   55   59   63   65   68   74 
LCS_GDT     L     126     L     126      4    7   31     4    4    5    6   10   13   16   21   26   32   37   41   44   49   55   59   63   65   68   74 
LCS_GDT     M     127     M     127      4    7   31     4    4    5    6    7   11   13   15   18   21   28   33   38   43   49   52   56   61   67   74 
LCS_GDT     T     128     T     128      4    8   31     4    4    4    6    8   11   13   15   18   23   28   34   39   43   49   52   56   61   67   71 
LCS_GDT     N     129     N     129      5    8   31     3    4    5    6    8   11   13   15   18   22   24   26   35   37   42   50   52   56   66   69 
LCS_GDT     Y     130     Y     130      5    8   31     3    4    5    6    8   11   13   14   18   20   22   25   28   34   37   48   50   52   58   64 
LCS_GDT     E     131     E     131      5    8   22     3    4    5    6    8   10   13   14   17   19   22   26   28   34   36   39   45   48   53   57 
LCS_GDT     S     132     S     132      5    8   17     2    4    5    5    8    8    9   12   17   19   22   25   28   32   36   39   43   48   51   53 
LCS_GDT     A     133     A     133      5    8   17     0    3    5    5    8    8    9   11   16   19   22   25   28   32   36   39   43   48   51   53 
LCS_GDT     P     134     P     134      3    8   17     0    3    4    6    8    8    9   13   17   19   22   25   28   32   36   39   40   43   51   52 
LCS_GDT     P     135     P     135      3    8   17     0    3    4    6    8    9    9   13   17   19   22   25   28   32   36   39   43   47   51   53 
LCS_AVERAGE  LCS_A:   9.88  (   4.06    6.75   18.83 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA      8      8      8     12     16     21     24     27     29     32     37     41     44     49     55     59     63     65     68     74 
GDT PERCENT_CA   6.56   6.56   6.56   9.84  13.11  17.21  19.67  22.13  23.77  26.23  30.33  33.61  36.07  40.16  45.08  48.36  51.64  53.28  55.74  60.66
GDT RMS_LOCAL    0.16   0.16   0.16   1.49   1.84   2.19   2.38   2.66   2.81   3.13   3.69   4.10   4.29   4.88   5.30   5.55   5.77   5.95   6.16   6.70
GDT RMS_ALL_CA  21.82  21.82  21.82  13.05  12.98  12.96  12.89  12.86  12.84  12.77  12.85  12.86  12.88  12.63  12.71  12.64  12.68  12.58  12.57  12.60

#      Molecule1      Molecule2       DISTANCE
LGA    E      14      E      14          3.839
LGA    E      15      E      15          3.112
LGA    S      16      S      16          2.920
LGA    F      17      F      17          1.860
LGA    L      18      L      18          2.313
LGA    Y      19      Y      19          2.697
LGA    F      20      F      20          8.148
LGA    A      21      A      21          8.345
LGA    Y      22      Y      22          9.334
LGA    G      23      G      23         10.243
LGA    S      24      S      24          9.764
LGA    N      25      N      25         10.182
LGA    L      26      L      26         13.458
LGA    L      27      L      27         14.194
LGA    T      28      T      28          9.897
LGA    E      29      E      29          9.005
LGA    R      30      R      30          8.398
LGA    I      31      I      31          1.505
LGA    H      32      H      32          1.397
LGA    L      33      L      33          6.705
LGA    R      34      R      34         10.711
LGA    N      35      N      35         10.898
LGA    P      36      P      36          8.093
LGA    S      37      S      37          2.862
LGA    A      38      A      38          2.466
LGA    A      39      A      39          7.323
LGA    F      40      F      40         12.666
LGA    F      41      F      41         14.752
LGA    C      42      C      42         14.663
LGA    V      43      V      43         13.234
LGA    A      44      A      44         12.643
LGA    R      45      R      45         13.126
LGA    L      46      L      46         14.616
LGA    Q      47      Q      47         17.971
LGA    D      48      D      48         18.669
LGA    F      49      F      49         13.905
LGA    K      50      K      50         10.637
LGA    L      51      L      51          9.916
LGA    D      52      D      52         13.249
LGA    F      53      F      53         14.637
LGA    G      54      G      54         17.835
LGA    N      55      N      55         18.104
LGA    S      56      S      56         21.230
LGA    Q      57      Q      57         23.141
LGA    G      58      G      58         22.893
LGA    K      59      K      59         22.250
LGA    T      60      T      60         15.491
LGA    S      61      S      61         10.429
LGA    Q      62      Q      62          9.093
LGA    T      63      T      63          6.836
LGA    W      64      W      64          0.883
LGA    H      65      H      65          7.495
LGA    G      66      G      66          9.283
LGA    G      67      G      67          8.348
LGA    I      68      I      68          2.901
LGA    A      69      A      69          2.600
LGA    T      70      T      70          1.787
LGA    I      71      I      71          2.885
LGA    F      72      F      72          6.477
LGA    Q      73      Q      73          7.283
LGA    S      74      S      74         10.226
LGA    P      75      P      75         10.438
LGA    G      76      G      76         10.593
LGA    D      77      D      77         12.036
LGA    E      78      E      78         10.011
LGA    V      79      V      79          7.163
LGA    W      80      W      80          7.092
LGA    G      81      G      81          7.265
LGA    V      82      V      82         10.454
LGA    V      83      V      83         14.599
LGA    W      84      W      84         15.686
LGA    K      85      K      85         21.118
LGA    M      86      M      86         23.189
LGA    N      87      N      87         24.168
LGA    K      88      K      88         25.011
LGA    S      89      S      89         24.961
LGA    N      90      N      90         18.827
LGA    L      91      L      91         15.462
LGA    N      92      N      92         15.072
LGA    S      93      S      93         13.049
LGA    L      94      L      94          9.601
LGA    D      95      D      95          9.655
LGA    E      96      E      96          8.598
LGA    Q      97      Q      97         10.285
LGA    E      98      E      98         12.547
LGA    G      99      G      99          9.133
LGA    V     100      V     100          5.601
LGA    K     101      K     101          7.211
LGA    S     102      S     102          6.226
LGA    G     103      G     103          3.324
LGA    M     104      M     104          4.149
LGA    Y     105      Y     105          1.984
LGA    V     106      V     106          3.767
LGA    V     107      V     107          3.399
LGA    I     108      I     108          1.317
LGA    E     109      E     109          2.286
LGA    V     110      V     110          5.365
LGA    K     111      K     111          4.397
LGA    V     112      V     112          4.973
LGA    A     113      A     113          3.774
LGA    T     114      T     114          2.279
LGA    Q     115      Q     115          2.961
LGA    E     116      E     116          3.994
LGA    G     117      G     117          6.468
LGA    K     118      K     118          9.618
LGA    E     119      E     119          8.758
LGA    I     120      I     120         11.650
LGA    T     121      T     121         11.684
LGA    C     122      C     122          9.026
LGA    R     123      R     123          7.402
LGA    S     124      S     124          1.911
LGA    Y     125      Y     125          1.586
LGA    L     126      L     126          5.810
LGA    M     127      M     127         10.952
LGA    T     128      T     128         12.132
LGA    N     129      N     129         15.677
LGA    Y     130      Y     130         19.927
LGA    E     131      E     131         25.672
LGA    S     132      S     132         30.333
LGA    A     133      A     133         31.985
LGA    P     134      P     134         33.127
LGA    P     135      P     135         29.215

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  122  122    4.0     27    2.64    21.721    17.656     0.984

LGA_LOCAL      RMSD =  2.644  Number of atoms =   27  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 12.804  Number of atoms =  122 
Std_ALL_ATOMS  RMSD = 12.336  (standard rmsd on all 122 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.953755 * X  +   0.050136 * Y  +   0.296375 * Z  +  -1.846115
  Y_new =   0.143484 * X  +   0.942342 * Y  +   0.302332 * Z  +  89.222672
  Z_new =  -0.264129 * X  +   0.330875 * Y  +  -0.905957 * Z  +  -3.533856 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.791422   -0.350171  [ DEG:   159.9367    -20.0633 ]
  Theta =   0.267300    2.874292  [ DEG:    15.3152    164.6848 ]
  Phi   =   2.992272   -0.149321  [ DEG:   171.4445     -8.5555 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0342TS393_3-D1                               
REMARK     2: T0342_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0342TS393_3-D1.T0342_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  122  122   4.0   27   2.64  17.656    12.34
REMARK  ---------------------------------------------------------- 
MOLECULE T0342TS393_3-D1
PFRMAT TS
TARGET T0342
MODEL 3
PARENT N/A
ATOM     14  CA  GLU    14       1.982  78.665 -17.513  1.00 25.00           C
ATOM     15  CA  GLU    15       2.471  81.279 -14.792  1.00 25.00           C
ATOM     16  CA  SER    16       2.236  83.462 -11.744  1.00 25.00           C
ATOM     17  CA  PHE    17       1.206  85.598  -8.716  1.00 25.00           C
ATOM     18  CA  LEU    18       2.438  85.785  -5.094  1.00 25.00           C
ATOM     19  CA  TYR    19       2.064  84.273  -1.576  1.00 25.00           C
ATOM     20  CA  PHE    20      -1.339  83.812  -0.009  1.00 25.00           C
ATOM     21  CA  ALA    21      -3.646  86.668   1.184  1.00 25.00           C
ATOM     22  CA  TYR    22      -2.809  89.929   3.021  1.00 25.00           C
ATOM     23  CA  GLY    23      -4.689  93.088   3.749  1.00 25.00           C
ATOM     24  CA  SER    24      -6.543  90.672   6.098  1.00 25.00           C
ATOM     25  CA  ASN    25      -7.780  87.809   3.920  1.00 25.00           C
ATOM     26  CA  LEU    26      -8.345  85.011   6.436  1.00 25.00           C
ATOM     27  CA  LEU    27      -8.973  82.967   3.360  1.00 25.00           C
ATOM     28  CA  THR    28      -5.334  81.931   3.241  1.00 25.00           C
ATOM     29  CA  GLU    29      -5.419  78.206   2.354  1.00 25.00           C
ATOM     30  CA  ARG    30      -1.749  78.355   1.271  1.00 25.00           C
ATOM     31  CA  ILE    31      -0.821  80.079   4.563  1.00 25.00           C
ATOM     32  CA  HIS    32      -2.697  77.382   6.532  1.00 25.00           C
ATOM     33  CA  LEU    33      -0.856  74.646   4.585  1.00 25.00           C
ATOM     34  CA  ARG    34       2.497  76.343   5.321  1.00 25.00           C
ATOM     35  CA  ASN    35       5.631  76.680   3.144  1.00 25.00           C
ATOM     36  CA  PRO    36       3.797  74.913   0.295  1.00 25.00           C
ATOM     37  CA  SER    37       0.397  74.812  -1.533  1.00 25.00           C
ATOM     38  CA  ALA    38       1.128  78.166  -3.191  1.00 25.00           C
ATOM     39  CA  ALA    39      -1.680  80.639  -3.885  1.00 25.00           C
ATOM     40  CA  PHE    40      -2.718  84.141  -4.867  1.00 25.00           C
ATOM     41  CA  PHE    41      -2.956  87.754  -3.654  1.00 25.00           C
ATOM     42  CA  CYS    42       0.201  89.752  -3.028  1.00 25.00           C
ATOM     43  CA  VAL    43       0.946  88.686   0.565  1.00 25.00           C
ATOM     44  CA  ALA    44       1.254  86.179   3.472  1.00 25.00           C
ATOM     45  CA  ARG    45       3.722  83.241   3.328  1.00 25.00           C
ATOM     46  CA  LEU    46       5.947  81.649   5.985  1.00 25.00           C
ATOM     47  CA  GLN    47       8.553  81.578   8.808  1.00 25.00           C
ATOM     48  CA  ASP    48       7.966  84.638  10.989  1.00 25.00           C
ATOM     49  CA  PHE    49       6.597  88.147  11.574  1.00 25.00           C
ATOM     50  CA  LYS    50       7.010  89.071   7.937  1.00 25.00           C
ATOM     51  CA  LEU    51       3.346  88.353   7.462  1.00 25.00           C
ATOM     52  CA  ASP    52      -0.286  87.283   7.618  1.00 25.00           C
ATOM     53  CA  PHE    53      -3.608  86.154   6.233  1.00 25.00           C
ATOM     54  CA  GLY    54      -3.671  82.699   7.915  1.00 25.00           C
ATOM     55  CA  ASN    55      -0.550  82.766  10.146  1.00 25.00           C
ATOM     56  CA  SER    56      -2.103  79.841  12.016  1.00 25.00           C
ATOM     57  CA  GLN    57      -1.669  82.208  14.997  1.00 25.00           C
ATOM     58  CA  GLY    58       1.954  83.358  14.726  1.00 25.00           C
ATOM     59  CA  LYS    59       3.234  83.363  18.278  1.00 25.00           C
ATOM     60  CA  THR    60       0.585  85.908  19.442  1.00 25.00           C
ATOM     61  CA  SER    61      -3.059  86.621  18.645  1.00 25.00           C
ATOM     62  CA  GLN    62      -3.992  89.681  20.711  1.00 25.00           C
ATOM     63  CA  THR    63      -4.081  92.090  17.703  1.00 25.00           C
ATOM     64  CA  TRP    64      -6.924  90.134  16.085  1.00 25.00           C
ATOM     65  CA  HIS    65      -5.313  87.276  14.194  1.00 25.00           C
ATOM     66  CA  GLY    66      -1.840  87.707  12.739  1.00 25.00           C
ATOM     67  CA  GLY    67       1.236  89.740  11.855  1.00 25.00           C
ATOM     68  CA  ILE    68       1.045  93.515  11.962  1.00 25.00           C
ATOM     69  CA  ALA    69       3.396  95.923  10.168  1.00 25.00           C
ATOM     70  CA  THR    70       3.363  98.058   7.054  1.00 25.00           C
ATOM     71  CA  ILE    71       4.437  97.497   3.397  1.00 25.00           C
ATOM     72  CA  PHE    72       5.081  97.899  -0.317  1.00 25.00           C
ATOM     73  CA  GLN    73       5.299 100.953  -2.637  1.00 25.00           C
ATOM     74  CA  SER    74       6.150 104.699  -2.794  1.00 25.00           C
ATOM     75  CA  PRO    75       9.011 107.139  -3.089  1.00 25.00           C
ATOM     76  CA  GLY    76      10.864 104.569  -0.933  1.00 25.00           C
ATOM     77  CA  ASP    77      11.201 101.925  -3.600  1.00 25.00           C
ATOM     78  CA  GLU    78      10.320  98.431  -2.433  1.00 25.00           C
ATOM     79  CA  VAL    79      10.699  95.184  -0.457  1.00 25.00           C
ATOM     80  CA  TRP    80       8.374  94.463   2.508  1.00 25.00           C
ATOM     81  CA  GLY    81       7.142  94.194   6.123  1.00 25.00           C
ATOM     82  CA  VAL    82       3.488  93.140   5.948  1.00 25.00           C
ATOM     83  CA  VAL    83      -0.053  94.367   6.688  1.00 25.00           C
ATOM     84  CA  TRP    84      -2.332  91.869   8.549  1.00 25.00           C
ATOM     85  CA  LYS    85      -4.985  91.317  11.243  1.00 25.00           C
ATOM     86  CA  MET    86      -3.974  94.863  12.246  1.00 25.00           C
ATOM     87  CA  ASN    87      -5.945  96.019   9.205  1.00 25.00           C
ATOM     88  CA  LYS    88      -9.518  95.977  10.509  1.00 25.00           C
ATOM     89  CA  SER    89     -11.975  98.134   8.514  1.00 25.00           C
ATOM     90  CA  ASN    90     -10.227  97.152   5.252  1.00 25.00           C
ATOM     91  CA  LEU    91     -10.430  93.453   6.227  1.00 25.00           C
ATOM     92  CA  ASN    92     -14.161  93.837   6.998  1.00 25.00           C
ATOM     93  CA  SER    93     -14.716  95.520   3.603  1.00 25.00           C
ATOM     94  CA  LEU    94     -12.845  92.669   1.857  1.00 25.00           C
ATOM     95  CA  ASP    95     -14.995  90.094   3.707  1.00 25.00           C
ATOM     96  CA  GLU    96     -18.173  91.956   2.656  1.00 25.00           C
ATOM     97  CA  GLN    97     -16.973  92.002  -0.981  1.00 25.00           C
ATOM     98  CA  GLU    98     -17.419  95.733  -0.629  1.00 25.00           C
ATOM     99  CA  GLY    99     -16.095  99.131   0.284  1.00 25.00           C
ATOM    100  CA  VAL   100     -12.319  99.262   1.035  1.00 25.00           C
ATOM    101  CA  LYS   101     -12.120 101.865   3.744  1.00 25.00           C
ATOM    102  CA  SER   102      -8.341 102.243   3.628  1.00 25.00           C
ATOM    103  CA  GLY   103      -7.110 100.865   0.287  1.00 25.00           C
ATOM    104  CA  MET   104      -6.937  97.217   1.076  1.00 25.00           C
ATOM    105  CA  TYR   105      -5.266  98.054   4.360  1.00 25.00           C
ATOM    106  CA  VAL   106      -1.938  97.673   2.606  1.00 25.00           C
ATOM    107  CA  VAL   107      -1.084  98.107  -1.108  1.00 25.00           C
ATOM    108  CA  ILE   108       0.923  95.590  -3.111  1.00 25.00           C
ATOM    109  CA  GLU   109       2.933  93.307  -5.397  1.00 25.00           C
ATOM    110  CA  VAL   110       4.909  90.158  -4.914  1.00 25.00           C
ATOM    111  CA  LYS   111       8.112  91.101  -3.193  1.00 25.00           C
ATOM    112  CA  VAL   112       9.298  87.938  -1.448  1.00 25.00           C
ATOM    113  CA  ALA   113      13.005  87.498  -2.165  1.00 25.00           C
ATOM    114  CA  THR   114      15.431  85.832   0.261  1.00 25.00           C
ATOM    115  CA  GLN   115      18.659  86.135  -1.617  1.00 25.00           C
ATOM    116  CA  GLU   116      21.898  87.961  -0.857  1.00 25.00           C
ATOM    117  CA  GLY   117      22.690  90.539   1.879  1.00 25.00           C
ATOM    118  CA  LYS   118      18.931  90.160   2.608  1.00 25.00           C
ATOM    119  CA  GLU   119      15.298  90.750   1.654  1.00 25.00           C
ATOM    120  CA  ILE   120      12.530  91.864   4.009  1.00 25.00           C
ATOM    121  CA  THR   121      10.551  88.681   3.562  1.00 25.00           C
ATOM    122  CA  CYS   122       7.221  86.952   2.994  1.00 25.00           C
ATOM    123  CA  ARG   123       5.624  90.253   1.989  1.00 25.00           C
ATOM    124  CA  SER   124       4.021  92.588  -0.530  1.00 25.00           C
ATOM    125  CA  TYR   125       1.177  93.677   1.734  1.00 25.00           C
ATOM    126  CA  LEU   126      -2.243  93.295   0.013  1.00 25.00           C
ATOM    127  CA  MET   127      -4.062  92.927  -3.305  1.00 25.00           C
ATOM    128  CA  THR   128      -6.739  95.491  -4.205  1.00 25.00           C
ATOM    129  CA  ASN   129     -10.392  96.081  -4.998  1.00 25.00           C
ATOM    130  CA  TYR   130     -14.188  95.571  -4.934  1.00 25.00           C
ATOM    131  CA  GLU   131     -17.841  96.378  -5.623  1.00 25.00           C
ATOM    132  CA  SER   132     -21.506  95.893  -4.771  1.00 25.00           C
ATOM    133  CA  ALA   133     -24.298  94.300  -2.859  1.00 25.00           C
ATOM    134  CA  PRO   134     -22.889  90.804  -2.456  1.00 25.00           C
ATOM    135  CA  PRO   135     -21.265  88.009  -0.521  1.00 25.00           C
TER
END
