
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  117 (  117),  selected  109 , name T0350TS168_2
# Molecule2: number of CA atoms  109 ( 1798),  selected  109 , name T0350.pdb
# PARAMETERS: T0350TS168_2.T0350.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    40        70 - 109         4.69    16.23
  LCS_AVERAGE:     31.81

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    23        32 - 54          1.61    15.49
  LCS_AVERAGE:     13.99

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    17        36 - 52          0.97    15.15
  LCS_AVERAGE:      8.12

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  109
LCS_GDT     M       1     M       1      3    7   28     3    3    3    3    5    7    8   10   10   15   21   31   40   47   50   56   61   64   68   70 
LCS_GDT     N       2     N       2      3    7   28     3    3    5    6    9   13   15   17   23   29   35   38   43   47   52   56   61   64   68   70 
LCS_GDT     I       3     I       3      3    7   28     3    4    5    6   10   13   15   17   19   22   27   33   40   47   51   56   61   64   68   70 
LCS_GDT     E       4     E       4      4    7   28     3    3    5    6    7   13   15   17   19   22   30   35   41   47   52   56   61   64   68   70 
LCS_GDT     R       5     R       5      4    7   28     3    4    4    5    7    9   12   16   17   22   25   30   31   37   44   47   54   63   68   70 
LCS_GDT     L       6     L       6      4    7   28     3    4    6    8   11   13   15   19   23   24   28   31   37   40   47   52   61   64   68   70 
LCS_GDT     T       7     T       7      4    7   28     3    4    5    6    7    7   16   19   23   24   26   28   31   38   43   47   49   54   59   62 
LCS_GDT     T       8     T       8      4    7   28     3    3    5    6    7    7   16   19   23   24   26   28   31   38   43   47   49   54   59   62 
LCS_GDT     L       9     L       9      4    6   28     3    3    5    7    9   13   15   19   23   24   26   28   33   38   43   47   49   54   59   62 
LCS_GDT     Q      10     Q      10      3    5   28     3    3    5    6   11   13   14   19   23   24   26   28   29   32   39   44   48   54   56   61 
LCS_GDT     P      11     P      11      3    4   28     3    3    4    5    5    7   12   15   23   24   26   28   33   38   43   47   49   54   59   62 
LCS_GDT     V      12     V      12      3   12   28     3    3    6    7   10   13   16   19   23   24   26   28   33   38   43   47   49   54   59   62 
LCS_GDT     W      13     W      13     11   16   28     5   11   11   12   14   17   18   19   21   23   26   28   33   38   43   47   49   54   59   62 
LCS_GDT     D      14     D      14     11   16   28     5   11   11   12   14   17   18   19   23   24   26   28   29   34   40   44   49   54   59   62 
LCS_GDT     R      15     R      15     11   16   28     5   11   11   12   14   17   18   19   23   24   26   28   33   38   43   47   49   54   59   62 
LCS_GDT     Y      16     Y      16     11   16   28     5   11   11   12   14   17   18   19   22   24   26   29   33   38   43   47   49   54   59   62 
LCS_GDT     D      17     D      17     11   16   28     5   11   11   12   14   17   18   19   23   24   26   28   29   34   37   42   47   53   57   61 
LCS_GDT     T      18     T      18     11   16   28     5   11   11   12   14   17   18   19   23   24   26   28   29   34   37   44   47   53   57   60 
LCS_GDT     Q      19     Q      19     11   16   28     5   11   11   12   14   17   18   19   23   24   26   28   33   38   43   47   49   54   59   62 
LCS_GDT     I      20     I      20     11   16   28     5   11   11   12   14   17   18   19   23   24   26   28   29   34   37   42   48   53   57   61 
LCS_GDT     H      21     H      21     11   16   28     5   11   11   12   14   17   18   19   23   24   26   28   29   34   37   40   41   47   51   53 
LCS_GDT     N      22     N      22     11   16   28     3   11   11   12   14   17   18   19   23   24   26   28   29   34   37   42   47   53   57   60 
LCS_GDT     Q      23     Q      23     11   16   28     3    5   10   12   14   17   18   19   23   24   26   28   29   34   37   42   48   53   57   61 
LCS_GDT     K      24     K      24      5   16   28     3    4    5    7   12   17   18   19   23   24   26   28   29   36   40   46   49   54   57   61 
LCS_GDT     D      25     D      25      4   16   28     3    4    7   12   14   17   18   19   23   24   26   29   33   38   43   47   49   54   59   62 
LCS_GDT     N      26     N      26      4   16   29     3    4    6   12   14   17   18   19   21   24   28   31   35   38   43   47   53   58   64   66 
LCS_GDT     D      27     D      27      4   16   32     3    4    6   12   14   17   18   19   23   24   29   33   35   40   45   53   58   64   68   70 
LCS_GDT     N      28     N      28      4   16   32     3    4    8   10   11   17   18   19   20   23   25   28   29   31   37   39   50   63   64   70 
LCS_GDT     E      29     E      29      4    9   32     3    3    5    7   12   12   14   15   18   21   25   25   29   30   41   56   61   64   68   70 
LCS_GDT     V      30     V      30      5    9   32     3    3    5    5    9   12   14   16   18   21   22   25   29   32   41   56   61   64   68   70 
LCS_GDT     P      31     P      31      5    9   32     3    4    5    7    9   11   13   16   18   21   22   25   30   43   52   56   61   64   68   70 
LCS_GDT     V      32     V      32      6   23   33     3    4    8   15   22   24   25   26   29   29   31   37   43   47   52   56   61   64   68   70 
LCS_GDT     H      33     H      33      6   23   34     3    4    8   10   22   24   25   26   29   29   31   36   43   47   52   56   61   64   68   70 
LCS_GDT     Q      34     Q      34      6   23   34     3    6   15   21   22   24   25   26   29   29   31   34   43   47   52   56   61   64   68   70 
LCS_GDT     V      35     V      35      6   23   34     3   10   15   21   22   24   25   26   29   29   31   34   43   47   52   56   61   64   68   70 
LCS_GDT     S      36     S      36     17   23   34     3    8   15   21   22   24   25   26   29   29   31   34   39   47   52   56   61   64   68   70 
LCS_GDT     Y      37     Y      37     17   23   34     3   15   16   21   22   24   25   26   29   29   31   34   39   47   52   56   61   64   68   70 
LCS_GDT     T      38     T      38     17   23   34     3   15   16   21   22   24   25   26   29   29   31   36   43   47   52   56   61   64   68   70 
LCS_GDT     N      39     N      39     17   23   34     5   15   16   21   22   24   25   26   29   29   34   37   43   47   52   56   61   64   68   70 
LCS_GDT     L      40     L      40     17   23   34     5   15   16   21   22   24   25   26   29   29   31   36   43   47   52   56   61   64   68   70 
LCS_GDT     A      41     A      41     17   23   34     8   15   16   21   22   24   25   26   29   29   32   37   43   47   52   56   61   64   68   70 
LCS_GDT     E      42     E      42     17   23   34     5   15   16   21   22   24   25   26   29   32   35   38   43   47   52   56   61   64   68   70 
LCS_GDT     M      43     M      43     17   23   34     7   15   16   21   22   24   25   26   29   32   35   38   43   47   52   56   61   64   68   70 
LCS_GDT     V      44     V      44     17   23   34     8   15   16   21   22   24   25   26   29   29   35   38   43   47   52   56   61   64   68   70 
LCS_GDT     G      45     G      45     17   23   34     6   15   16   21   22   24   25   26   29   29   35   38   43   47   52   56   61   64   68   70 
LCS_GDT     E      46     E      46     17   23   34     8   15   16   21   22   24   25   26   29   29   35   38   43   47   52   56   61   64   68   70 
LCS_GDT     M      47     M      47     17   23   34     8   15   16   21   22   24   25   26   29   29   35   38   43   47   52   56   61   64   68   70 
LCS_GDT     N      48     N      48     17   23   34     8   15   16   21   22   24   25   26   29   29   35   38   43   47   51   56   61   64   68   70 
LCS_GDT     K      49     K      49     17   23   34     8   15   16   21   22   24   25   26   29   29   35   38   43   47   51   56   61   64   68   70 
LCS_GDT     L      50     L      50     17   23   34     8   15   16   21   22   24   25   26   29   29   35   38   43   47   51   56   61   64   68   70 
LCS_GDT     L      51     L      51     17   23   34     8   15   16   21   22   24   25   26   29   29   31   33   38   43   48   56   61   64   68   70 
LCS_GDT     E      52     E      52     17   23   34     8   12   16   21   22   24   25   26   29   29   31   33   38   43   48   56   61   64   68   70 
LCS_GDT     P      53     P      53     14   23   34     4    7   14   21   22   24   25   26   29   29   31   33   38   43   48   56   61   64   68   70 
LCS_GDT     S      54     S      54     14   23   34     4    8   14   21   22   24   25   26   29   29   31   33   36   43   48   53   60   64   68   70 
LCS_GDT     Q      55     Q      55      4   22   34     3    4    5    7   12   18   20   23   29   29   35   38   43   47   52   56   61   64   68   70 
LCS_GDT     V      56     V      56      4    6   34     3    4    6    8   13   18   20   23   25   29   35   38   43   47   52   56   61   64   68   70 
LCS_GDT     H      57     H      57      4    9   34     3    4    5    7   10   14   19   22   26   32   35   38   43   47   52   56   61   64   68   70 
LCS_GDT     L      58     L      58      4    9   34     3    4    5    7   14   17   20   22   26   32   35   38   43   47   52   56   61   64   68   70 
LCS_GDT     K      59     K      59      4    9   34     3    4    5    7   11   14   17   22   26   32   35   38   43   47   52   56   61   64   68   70 
LCS_GDT     F      60     F      60      4    9   34     3    4    4    7   10   14   15   22   24   30   34   38   43   47   52   56   61   64   68   70 
LCS_GDT     E      61     E      61      4    9   34     3    4    5    7    8   10   11   13   17   25   29   34   39   45   51   56   61   64   68   70 
LCS_GDT     L      62     L      62      4    9   34     3    3    5    7    8   10   11   12   15   25   29   31   33   45   49   53   57   59   62   66 
LCS_GDT     H      63     H      63      4    9   34     3    4    5    7    8   10   11   12   13   17   29   31   33   35   37   40   41   47   54   61 
LCS_GDT     D      64     D      64      4    9   34     3    3    5    7    8   10   11   12   19   25   29   31   35   37   38   40   45   53   56   61 
LCS_GDT     K      65     K      65      4    9   34     3    3    5    6    8    9   11   14   19   26   29   33   36   37   41   46   49   54   59   62 
LCS_GDT     L      66     L      66      4    9   34     3    3    5    6   10   12   13   16   18   20   21   25   30   36   41   47   49   54   59   62 
LCS_GDT     N      67     N      67      4    9   25     0    3    4    6   10   10   12   16   18   20   21   26   34   41   49   56   61   64   68   70 
LCS_GDT     E      68     E      68      3    9   37     3    3    6    7   10   12   15   18   21   29   35   38   43   47   52   56   61   64   68   70 
LCS_GDT     Y      69     Y      69      4    9   39     3    4    6    7   10   12   15   20   23   28   35   38   41   47   51   56   61   64   68   70 
LCS_GDT     Y      70     Y      70      4    9   40     3    4    5    7   10   14   19   21   24   29   35   38   43   47   52   56   61   64   68   70 
LCS_GDT     V      71     V      71      4    9   40     3    4    6    7   10   12   19   21   24   30   35   38   43   47   52   56   61   64   68   70 
LCS_GDT     K      72     K      72      4   12   40     3    4    8    9   11   12   19   22   26   32   35   38   43   47   52   56   61   64   68   70 
LCS_GDT     V      73     V      73      4   12   40     3    4    7   10   11   15   19   21   26   32   35   38   43   47   52   56   61   64   68   70 
LCS_GDT     I      74     I      74      4   12   40     3    4    6    9   11   15   19   22   26   32   35   38   43   47   52   56   61   64   68   70 
LCS_GDT     E      75     E      75      4   12   40     3    4    8    9   11   13   19   22   26   32   35   38   43   47   52   56   61   64   68   70 
LCS_GDT     D      76     D      76      4   12   40     3    4    8    9   11   15   19   22   26   32   35   38   43   47   52   56   61   64   68   70 
LCS_GDT     S      77     S      77      4   12   40     3    4    8    9   11   14   17   22   26   32   35   38   43   47   52   56   61   64   68   70 
LCS_GDT     T      78     T      78      4   12   40     3    4    8    9   11   14   17   22   25   32   35   38   40   47   51   56   61   64   68   70 
LCS_GDT     N      79     N      79      4   12   40     3    4    8    9   11   12   18   22   25   32   35   38   40   47   51   56   61   64   68   70 
LCS_GDT     E      80     E      80      4   12   40     3    4    8    9   11   13   17   22   25   32   35   38   43   47   52   56   61   64   68   70 
LCS_GDT     V      81     V      81      3   12   40     3    4    6    8   11   13   17   22   24   29   35   38   43   47   52   56   61   64   68   70 
LCS_GDT     I      82     I      82      3   12   40     3    3    5    9   11   12   15   20   26   32   35   38   43   47   52   56   61   64   68   70 
LCS_GDT     R      83     R      83      3   12   40     3    4    8    9   11   12   17   20   26   30   35   38   43   47   52   56   61   64   68   70 
LCS_GDT     E      84     E      84      3    5   40     3    3    6    8   10   12   15   20   26   30   35   38   43   46   52   56   61   64   68   70 
LCS_GDT     I      85     I      85      3   20   40     1    3    6    8   10   12   15   20   24   25   35   38   40   45   47   52   57   61   67   68 
LCS_GDT     P      86     P      86      5   20   40     1    3    6   10   16   19   21   22   26   32   35   38   43   45   51   56   59   62   67   70 
LCS_GDT     P      87     P      87     14   20   40     4   10   14   17   18   19   21   22   26   32   35   38   43   46   51   56   61   64   68   70 
LCS_GDT     K      88     K      88     14   20   40     4    4    8   14   18   19   21   22   26   32   35   38   43   47   51   56   61   64   68   70 
LCS_GDT     R      89     R      89     16   20   40     7   13   16   17   18   19   21   22   26   32   35   38   43   47   52   56   61   64   68   70 
LCS_GDT     W      90     W      90     16   20   40     8   13   16   17   18   19   21   22   26   32   35   38   43   47   52   56   61   64   68   70 
LCS_GDT     L      91     L      91     16   20   40     8   13   16   17   18   19   21   22   26   32   35   38   43   47   52   56   61   64   68   70 
LCS_GDT     D      92     D      92     16   20   40     8   13   16   17   18   19   21   22   29   32   35   38   43   47   52   56   61   64   68   70 
LCS_GDT     F      93     F      93     16   20   40     8   13   16   17   18   19   21   26   29   32   35   38   43   47   52   56   61   64   68   70 
LCS_GDT     Y      94     Y      94     16   20   40     8   13   16   17   18   19   21   22   29   32   35   38   43   47   52   56   61   64   68   70 
LCS_GDT     A      95     A      95     16   20   40     8   13   16   17   22   24   25   26   29   32   35   38   43   47   52   56   61   64   68   70 
LCS_GDT     A      96     A      96     16   20   40     8   13   16   17   18   23   25   26   29   32   35   38   43   47   52   56   61   64   68   70 
LCS_GDT     M      97     M      97     16   20   40     5   13   16   17   18   19   21   22   26   32   35   38   43   47   52   56   61   64   68   70 
LCS_GDT     T      98     T      98     16   20   40     8   13   16   17   18   19   21   22   26   32   35   38   43   47   52   56   61   64   68   70 
LCS_GDT     E      99     E      99     16   20   40     8   13   16   17   18   19   21   22   26   32   35   38   43   46   52   56   61   64   67   70 
LCS_GDT     F     100     F     100     16   20   40     8   13   16   17   18   19   21   22   26   32   35   38   43   46   52   56   61   64   67   70 
LCS_GDT     L     101     L     101     16   20   40     4   13   16   17   18   19   21   22   26   32   35   38   43   46   52   56   61   64   67   70 
LCS_GDT     G     102     G     102     16   20   40     4   13   16   17   18   19   21   22   26   32   35   38   43   46   51   56   59   62   65   68 
LCS_GDT     L     103     L     103     16   20   40     4   13   16   17   18   19   21   22   26   31   35   38   43   46   51   56   59   60   64   66 
LCS_GDT     F     104     F     104     16   20   40     4   10   16   17   18   19   21   22   26   31   35   38   43   46   51   56   59   60   64   66 
LCS_GDT     V     105     V     105      4   20   40     3    3    4   11   16   18   21   22   26   31   35   38   43   45   51   55   57   60   62   66 
LCS_GDT     D     106     D     106      4   20   40     3    3    4    7   10   14   21   22   26   31   35   38   43   46   51   56   59   60   64   66 
LCS_GDT     E     107     E     107      4    5   40     3    3    4    7   10   13   14   19   25   27   29   36   40   45   49   54   57   60   64   66 
LCS_GDT     K     108     K     108      4    5   40     3    3    4    8   10   12   16   19   23   24   29   30   38   42   49   53   56   58   61   64 
LCS_GDT     K     109     K     109      3    5   40     3    3    3    4    6    7   16   19   23   30   35   37   40   45   49   53   56   59   61   64 
LCS_AVERAGE  LCS_A:  17.97  (   8.12   13.99   31.81 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA      8     15     16     21     22     24     25     26     29     32     35     38     43     47     52     56     61     64     68     70 
GDT PERCENT_CA   7.34  13.76  14.68  19.27  20.18  22.02  22.94  23.85  26.61  29.36  32.11  34.86  39.45  43.12  47.71  51.38  55.96  58.72  62.39  64.22
GDT RMS_LOCAL    0.21   0.69   0.78   1.29   1.57   1.70   1.79   2.09   2.81   3.73   3.80   3.96   4.58   5.11   5.55   5.54   6.03   6.18   6.47   6.59
GDT RMS_ALL_CA  17.37  15.22  15.19  15.00  15.45  15.84  15.86  15.81  15.55  15.32  15.93  15.87  15.40  13.48  13.60  14.91  13.10  13.20  12.98  13.06

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1          9.945
LGA    N       2      N       2          9.939
LGA    I       3      I       3         14.038
LGA    E       4      E       4         14.618
LGA    R       5      R       5         19.050
LGA    L       6      L       6         16.749
LGA    T       7      T       7         20.196
LGA    T       8      T       8         23.053
LGA    L       9      L       9         21.199
LGA    Q      10      Q      10         27.870
LGA    P      11      P      11         25.198
LGA    V      12      V      12         23.125
LGA    W      13      W      13         22.766
LGA    D      14      D      14         24.025
LGA    R      15      R      15         19.777
LGA    Y      16      Y      16         21.907
LGA    D      17      D      17         28.106
LGA    T      18      T      18         27.093
LGA    Q      19      Q      19         23.449
LGA    I      20      I      20         28.013
LGA    H      21      H      21         32.627
LGA    N      22      N      22         30.279
LGA    Q      23      Q      23         29.227
LGA    K      24      K      24         29.213
LGA    D      25      D      25         24.387
LGA    N      26      N      26         19.449
LGA    D      27      D      27         13.380
LGA    N      28      N      28         16.099
LGA    E      29      E      29         13.125
LGA    V      30      V      30         11.540
LGA    P      31      P      31          9.558
LGA    V      32      V      32          3.705
LGA    H      33      H      33          3.581
LGA    Q      34      Q      34          3.729
LGA    V      35      V      35          3.566
LGA    S      36      S      36          3.440
LGA    Y      37      Y      37          3.241
LGA    T      38      T      38          1.930
LGA    N      39      N      39          3.335
LGA    L      40      L      40          2.747
LGA    A      41      A      41          1.357
LGA    E      42      E      42          2.107
LGA    M      43      M      43          1.405
LGA    V      44      V      44          1.272
LGA    G      45      G      45          2.440
LGA    E      46      E      46          2.336
LGA    M      47      M      47          1.691
LGA    N      48      N      48          2.859
LGA    K      49      K      49          3.342
LGA    L      50      L      50          2.938
LGA    L      51      L      51          3.457
LGA    E      52      E      52          3.525
LGA    P      53      P      53          3.409
LGA    S      54      S      54          2.656
LGA    Q      55      Q      55          4.448
LGA    V      56      V      56          6.443
LGA    H      57      H      57          8.916
LGA    L      58      L      58          9.981
LGA    K      59      K      59         10.708
LGA    F      60      F      60         11.504
LGA    E      61      E      61         13.709
LGA    L      62      L      62         14.313
LGA    H      63      H      63         16.405
LGA    D      64      D      64         16.176
LGA    K      65      K      65         17.573
LGA    L      66      L      66         17.184
LGA    N      67      N      67         14.475
LGA    E      68      E      68         11.334
LGA    Y      69      Y      69         13.653
LGA    Y      70      Y      70         11.597
LGA    V      71      V      71         10.098
LGA    K      72      K      72          9.360
LGA    V      73      V      73          8.572
LGA    I      74      I      74          9.379
LGA    E      75      E      75          8.600
LGA    D      76      D      76         11.593
LGA    S      77      S      77         13.795
LGA    T      78      T      78         18.094
LGA    N      79      N      79         17.767
LGA    E      80      E      80         14.420
LGA    V      81      V      81         13.081
LGA    I      82      I      82          6.908
LGA    R      83      R      83          7.768
LGA    E      84      E      84         10.025
LGA    I      85      I      85         11.484
LGA    P      86      P      86         11.327
LGA    P      87      P      87         10.302
LGA    K      88      K      88          9.515
LGA    R      89      R      89          8.406
LGA    W      90      W      90          8.127
LGA    L      91      L      91          6.703
LGA    D      92      D      92          4.753
LGA    F      93      F      93          3.943
LGA    Y      94      Y      94          4.497
LGA    A      95      A      95          3.092
LGA    A      96      A      96          3.815
LGA    M      97      M      97          5.617
LGA    T      98      T      98          6.481
LGA    E      99      E      99          8.378
LGA    F     100      F     100          9.988
LGA    L     101      L     101         12.050
LGA    G     102      G     102         13.596
LGA    L     103      L     103         15.959
LGA    F     104      F     104         17.917
LGA    V     105      V     105         17.969
LGA    D     106      D     106         16.598
LGA    E     107      E     107         16.973
LGA    K     108      K     108         22.631
LGA    K     109      K     109         23.207

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  117  109    4.0     26    2.09    27.064    23.154     1.189

LGA_LOCAL      RMSD =  2.086  Number of atoms =   26  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 14.703  Number of atoms =  109 
Std_ALL_ATOMS  RMSD = 12.071  (standard rmsd on all 109 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.769893 * X  +   0.582876 * Y  +  -0.259848 * Z  +  -1.404782
  Y_new =  -0.325310 * X  +  -0.708750 * Y  +  -0.625977 * Z  +   2.541982
  Z_new =  -0.549034 * X  +  -0.397403 * Y  +   0.735277 * Z  + -16.497135 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -0.495506    2.646087  [ DEG:   -28.3904    151.6096 ]
  Theta =   0.581208    2.560385  [ DEG:    33.3008    146.6992 ]
  Phi   =  -2.741808    0.399785  [ DEG:  -157.0940     22.9060 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0350TS168_2                                  
REMARK     2: T0350.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0350TS168_2.T0350.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  117  109   4.0   26   2.09  23.154    12.07
REMARK  ---------------------------------------------------------- 
MOLECULE T0350TS168_2
PFRMAT TS
TARGET T0350
MODEL 2
PARENT N/A
ATOM      1  CA  MET     1      -4.881   5.929   7.149  1.00 25.00           C
ATOM      2  CA  ASN     2      -4.849   5.543   3.400  1.00 25.00           C
ATOM      3  CA  ILE     3      -6.518   8.393   1.628  1.00 25.00           C
ATOM      4  CA  GLU     4      -4.587  11.713   1.413  1.00 25.00           C
ATOM      5  CA  ARG     5      -6.273  12.899  -1.782  1.00 25.00           C
ATOM      6  CA  LEU     6      -5.113   9.687  -3.459  1.00 25.00           C
ATOM      7  CA  THR     7      -5.748   8.682  -7.011  1.00 25.00           C
ATOM      8  CA  THR     8      -8.003   9.445  -9.954  1.00 25.00           C
ATOM      9  CA  LEU     9      -5.345  12.048 -10.871  1.00 25.00           C
ATOM     10  CA  GLN    10      -8.164  14.628 -10.860  1.00 25.00           C
ATOM     11  CA  PRO    11      -9.228  12.704 -14.035  1.00 25.00           C
ATOM     12  CA  VAL    12     -11.885  10.012 -13.564  1.00 25.00           C
ATOM     13  CA  TRP    13      -9.460   7.228 -14.487  1.00 25.00           C
ATOM     14  CA  ASP    14      -7.582   9.024 -17.300  1.00 25.00           C
ATOM     15  CA  ARG    15      -8.544   6.243 -19.751  1.00 25.00           C
ATOM     16  CA  TYR    16     -12.208   6.523 -18.670  1.00 25.00           C
ATOM     17  CA  ASP    17     -12.092  10.318 -19.177  1.00 25.00           C
ATOM     18  CA  THR    18     -10.588   9.830 -22.666  1.00 25.00           C
ATOM     19  CA  GLN    19     -13.345   7.316 -23.530  1.00 25.00           C
ATOM     20  CA  ILE    20     -16.010   9.788 -22.325  1.00 25.00           C
ATOM     21  CA  HIS    21     -14.446  12.554 -24.462  1.00 25.00           C
ATOM     22  CA  ASN    22     -14.443  10.232 -27.508  1.00 25.00           C
ATOM     23  CA  GLN    23     -18.207  10.556 -27.331  1.00 25.00           C
ATOM     24  CA  LYS    24     -20.330  10.628 -30.504  1.00 25.00           C
ATOM     25  CA  ASP    25     -21.833   7.328 -29.401  1.00 25.00           C
ATOM     26  CA  ASN    26     -22.546   3.741 -28.298  1.00 25.00           C
ATOM     27  CA  ASP    27     -21.985   0.089 -27.210  1.00 25.00           C
ATOM     28  CA  ASN    28     -22.122  -1.592 -30.658  1.00 25.00           C
ATOM     29  CA  GLU    29     -18.572  -2.649 -31.569  1.00 25.00           C
ATOM     30  CA  VAL    30     -15.167  -3.956 -30.361  1.00 25.00           C
ATOM     31  CA  PRO    31     -11.783  -2.249 -30.678  1.00 25.00           C
ATOM     32  CA  VAL    32     -10.001   0.718 -29.080  1.00 25.00           C
ATOM     33  CA  HIS    33      -8.576   3.071 -31.666  1.00 25.00           C
ATOM     34  CA  GLN    34      -6.891   5.807 -33.624  1.00 25.00           C
ATOM     35  CA  VAL    35      -3.317   6.510 -32.575  1.00 25.00           C
ATOM     36  CA  SER    36      -2.354   9.249 -34.982  1.00 25.00           C
ATOM     37  CA  TYR    37       0.142  10.165 -32.206  1.00 25.00           C
ATOM     38  CA  THR    38       0.299  13.369 -30.114  1.00 25.00           C
ATOM     39  CA  ASN    39      -1.629  11.649 -27.288  1.00 25.00           C
ATOM     40  CA  LEU    40       0.784   8.677 -27.419  1.00 25.00           C
ATOM     41  CA  ALA    41       3.774  11.064 -27.259  1.00 25.00           C
ATOM     42  CA  GLU    42       2.223  12.842 -24.241  1.00 25.00           C
ATOM     43  CA  MET    43       1.671   9.472 -22.508  1.00 25.00           C
ATOM     44  CA  VAL    44       5.313   8.499 -23.185  1.00 25.00           C
ATOM     45  CA  GLY    45       6.500  11.841 -21.741  1.00 25.00           C
ATOM     46  CA  GLU    46       4.346  11.288 -18.624  1.00 25.00           C
ATOM     47  CA  MET    47       5.807   7.772 -18.208  1.00 25.00           C
ATOM     48  CA  ASN    48       9.354   9.181 -18.529  1.00 25.00           C
ATOM     49  CA  LYS    49       8.561  11.842 -15.890  1.00 25.00           C
ATOM     50  CA  LEU    50       7.190   9.143 -13.545  1.00 25.00           C
ATOM     51  CA  LEU    51      10.358   7.054 -14.056  1.00 25.00           C
ATOM     52  CA  GLU    52      12.529  10.113 -13.282  1.00 25.00           C
ATOM     53  CA  PRO    53      10.506  10.774 -10.098  1.00 25.00           C
ATOM     54  CA  SER    54      11.319   7.199  -8.962  1.00 25.00           C
ATOM     55  CA  GLN    55      10.011   7.518  -5.404  1.00 25.00           C
ATOM     56  CA  VAL    56       7.311   5.045  -6.531  1.00 25.00           C
ATOM     57  CA  HIS    57       9.603   2.004  -6.378  1.00 25.00           C
ATOM     58  CA  LEU    58       9.597  -0.788  -8.920  1.00 25.00           C
ATOM     59  CA  LYS    59       8.712   2.112 -11.299  1.00 25.00           C
ATOM     60  CA  PHE    60       7.277  -0.383 -13.776  1.00 25.00           C
ATOM     61  CA  GLU    61       5.241   2.624 -14.923  1.00 25.00           C
ATOM     62  CA  LEU    62       2.562   3.467 -17.563  1.00 25.00           C
ATOM     63  CA  HIS    63       0.782   3.215 -20.924  1.00 25.00           C
ATOM     64  CA  ASP    64       1.072   0.693 -23.733  1.00 25.00           C
ATOM     65  CA  LYS    65       1.309  -2.734 -25.334  1.00 25.00           C
ATOM     66  CA  LEU    66       4.637  -4.266 -26.312  1.00 25.00           C
ATOM     67  CA  ASN    67       8.362  -3.649 -26.519  1.00 25.00           C
ATOM     68  CA  GLU    68      11.931  -2.335 -26.251  1.00 25.00           C
ATOM     69  CA  TYR    69      14.062  -4.913 -24.495  1.00 25.00           C
ATOM     70  CA  TYR    70      14.120  -3.206 -21.042  1.00 25.00           C
ATOM     71  CA  VAL    71      15.300  -0.441 -18.734  1.00 25.00           C
ATOM     72  CA  LYS    72      17.814   1.653 -16.720  1.00 25.00           C
ATOM     73  CA  VAL    73      16.586   0.291 -13.342  1.00 25.00           C
ATOM     74  CA  ILE    74      17.424   2.803 -10.656  1.00 25.00           C
ATOM     75  CA  GLU    75      14.357   1.688  -8.648  1.00 25.00           C
ATOM     76  CA  ASP    76      15.014   2.378  -4.999  1.00 25.00           C
ATOM     77  CA  SER    77      13.138   0.020  -2.704  1.00 25.00           C
ATOM     78  CA  THR    78      11.576  -3.440  -3.128  1.00 25.00           C
ATOM     79  CA  ASN    79      14.620  -4.062  -5.377  1.00 25.00           C
ATOM     80  CA  GLU    80      15.083  -3.819  -9.171  1.00 25.00           C
ATOM     81  CA  VAL    81      12.526  -4.743 -11.837  1.00 25.00           C
ATOM     82  CA  ILE    82      12.586  -2.333 -14.800  1.00 25.00           C
ATOM     83  CA  ARG    83      12.036   1.435 -15.435  1.00 25.00           C
ATOM     84  CA  GLU    84      10.511   4.231 -17.543  1.00 25.00           C
ATOM     85  CA  ILE    85      14.104   5.318 -18.263  1.00 25.00           C
ATOM     86  CA  PRO    86      13.994   4.078 -21.857  1.00 25.00           C
ATOM     87  CA  PRO    87      10.215   3.715 -21.621  1.00 25.00           C
ATOM     88  CA  LYS    88       8.354   1.377 -24.016  1.00 25.00           C
ATOM     89  CA  ARG    89       9.427  -1.652 -21.932  1.00 25.00           C
ATOM     90  CA  TRP    90       8.206   0.080 -18.741  1.00 25.00           C
ATOM     91  CA  LEU    91       4.848   0.849 -20.416  1.00 25.00           C
ATOM     92  CA  ASP    92       4.526  -2.808 -21.505  1.00 25.00           C
ATOM     93  CA  PHE    93       5.286  -3.965 -17.934  1.00 25.00           C
ATOM     94  CA  TYR    94       2.634  -1.565 -16.565  1.00 25.00           C
ATOM     95  CA  ALA    95       0.086  -2.899 -19.093  1.00 25.00           C
ATOM     96  CA  ALA    96       0.913  -6.495 -18.065  1.00 25.00           C
ATOM     97  CA  MET    97       0.465  -5.569 -14.376  1.00 25.00           C
ATOM     98  CA  THR    98      -2.916  -3.953 -15.167  1.00 25.00           C
ATOM     99  CA  GLU    99      -4.003  -7.098 -17.063  1.00 25.00           C
ATOM    100  CA  PHE   100      -2.954  -9.280 -14.095  1.00 25.00           C
ATOM    101  CA  LEU   101      -4.941  -7.036 -11.710  1.00 25.00           C
ATOM    102  CA  GLY   102      -8.009  -7.292 -13.988  1.00 25.00           C
ATOM    103  CA  LEU   103      -7.667 -11.106 -14.062  1.00 25.00           C
ATOM    104  CA  PHE   104      -7.426 -11.184 -10.241  1.00 25.00           C
ATOM    105  CA  VAL   105      -4.602 -10.347  -7.881  1.00 25.00           C
ATOM    106  CA  ASP   106      -6.778  -7.413  -6.991  1.00 25.00           C
ATOM    107  CA  GLU   107      -9.410  -9.211  -4.828  1.00 25.00           C
ATOM    108  CA  LYS   108     -12.457 -11.248  -5.938  1.00 25.00           C
ATOM    109  CA  LYS   109     -14.258  -8.033  -6.982  1.00 25.00           C
ATOM    110  CA  LEU   110     -17.629  -9.627  -7.481  1.00 25.00           C
ATOM    111  CA  GLU   111     -18.015  -7.942 -10.864  1.00 25.00           C
ATOM    112  CA  HIS   112     -20.846  -5.555  -9.927  1.00 25.00           C
ATOM    113  CA  HIS   113     -22.448  -5.566  -6.552  1.00 25.00           C
ATOM    114  CA  HIS   114     -21.711  -3.518  -3.464  1.00 25.00           C
ATOM    115  CA  HIS   115     -23.817  -1.138  -1.415  1.00 25.00           C
ATOM    116  CA  HIS   116     -24.097   1.169  -4.465  1.00 25.00           C
ATOM    117  CA  HIS   117     -22.662   3.319  -7.197  1.00 25.00           C
TER
END
