
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  117 (  117),  selected  109 , name T0350TS168_4
# Molecule2: number of CA atoms  109 ( 1798),  selected  109 , name T0350.pdb
# PARAMETERS: T0350TS168_4.T0350.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    40         5 - 44          4.97    14.82
  LONGEST_CONTINUOUS_SEGMENT:    40         6 - 45          4.97    14.93
  LCS_AVERAGE:     32.32

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    23        32 - 54          1.95    17.10
  LCS_AVERAGE:     12.20

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    19        34 - 52          0.99    17.69
  LCS_AVERAGE:      8.48

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  109
LCS_GDT     M       1     M       1      3    5   23     2    3    5    6    6    6   11   14   16   18   20   21   23   26   29   32   44   46   51   53 
LCS_GDT     N       2     N       2      3    5   35     0    3    5    6    6    6    8   10   15   16   20   24   28   32   38   47   50   53   58   63 
LCS_GDT     I       3     I       3      4    5   35     2    4    4    6    6    6    8   10   14   19   25   30   31   34   37   42   48   53   55   59 
LCS_GDT     E       4     E       4      4    6   37     3    4    5    6    9   12   15   20   22   24   29   32   34   35   36   39   46   48   53   54 
LCS_GDT     R       5     R       5      4    6   40     3    4    4    6    9   13   16   20   23   25   30   34   37   41   44   47   49   53   56   57 
LCS_GDT     L       6     L       6      4    6   40     3    4    8   11   12   14   16   21   24   27   32   35   40   43   46   48   53   57   60   63 
LCS_GDT     T       7     T       7      3    6   40     3    3    5   12   13   14   17   21   24   27   32   35   40   43   45   48   53   57   60   63 
LCS_GDT     T       8     T       8      4    6   40     3    3    4   12   13   14   17   21   24   27   32   35   40   43   46   49   53   57   60   63 
LCS_GDT     L       9     L       9      4    6   40     3    3   11   11   13   14   17   21   24   27   33   35   40   43   46   49   53   57   60   63 
LCS_GDT     Q      10     Q      10      4    6   40     4    4    5    6    9   14   17   21   24   27   33   35   40   43   46   49   53   57   60   63 
LCS_GDT     P      11     P      11      4    6   40     4    4    6    6    6   10   12   17   22   27   33   35   40   43   46   49   52   57   60   63 
LCS_GDT     V      12     V      12      4   11   40     4    4    5    6    8   10   15   21   24   27   33   35   40   43   46   49   53   57   60   63 
LCS_GDT     W      13     W      13     10   11   40     5   10   11   12   13   14   17   21   24   27   33   35   40   43   46   49   53   57   60   63 
LCS_GDT     D      14     D      14     10   11   40     5   10   11   12   13   14   17   19   23   26   32   35   40   43   46   49   53   57   60   63 
LCS_GDT     R      15     R      15     10   11   40     5   10   11   12   13   14   17   19   23   26   33   35   40   43   46   49   53   57   60   63 
LCS_GDT     Y      16     Y      16     10   11   40     5   10   11   12   13   14   17   21   24   27   33   35   40   43   46   49   53   57   60   63 
LCS_GDT     D      17     D      17     10   11   40     5   10   11   12   13   14   17   21   24   27   33   35   40   43   46   49   53   57   60   63 
LCS_GDT     T      18     T      18     10   11   40     5   10   11   12   13   14   17   19   21   25   30   34   40   43   46   49   53   57   60   63 
LCS_GDT     Q      19     Q      19     10   11   40     5   10   11   12   13   14   17   20   23   25   33   35   40   43   46   49   53   57   60   63 
LCS_GDT     I      20     I      20     10   11   40     5   10   11   12   13   14   17   21   24   27   33   35   40   43   46   49   53   57   60   63 
LCS_GDT     H      21     H      21     10   11   40     5   10   11   12   13   14   17   19   23   26   33   35   40   43   46   49   53   57   60   63 
LCS_GDT     N      22     N      22     10   11   40     5   10   11   12   13   14   16   20   22   25   30   32   34   38   41   46   51   57   60   63 
LCS_GDT     Q      23     Q      23      5   11   40     3    4    6    9   11   14   17   21   23   27   33   35   40   43   46   49   53   57   60   63 
LCS_GDT     K      24     K      24      5    7   40     3    3    6    8   11   14   17   21   24   27   32   35   40   43   46   49   53   57   60   63 
LCS_GDT     D      25     D      25      5    7   40     4    5    6    8   11   14   17   21   24   27   33   35   40   43   46   49   53   57   60   63 
LCS_GDT     N      26     N      26      5    9   40     4    5    6    8   11   14   17   21   24   27   33   35   40   43   46   49   53   57   60   63 
LCS_GDT     D      27     D      27      5    9   40     3    4    6    6    9   12   16   20   23   25   32   35   39   43   46   49   53   57   60   63 
LCS_GDT     N      28     N      28      3    9   40     3    3    4    7   11   14   17   21   24   26   32   35   40   42   45   47   52   57   60   63 
LCS_GDT     E      29     E      29      5    9   40     3    4    6    8   11   14   17   21   24   27   32   35   40   43   45   49   53   57   60   63 
LCS_GDT     V      30     V      30      5    9   40     3    4    6    8   11   14   17   21   24   27   32   35   40   43   46   49   53   57   60   63 
LCS_GDT     P      31     P      31      5    9   40     3    5    6    8   11   14   17   21   24   27   32   35   40   43   46   49   53   57   60   63 
LCS_GDT     V      32     V      32      5   23   40     3    4    5    9   11   23   23   25   27   28   33   35   40   43   46   49   53   57   60   63 
LCS_GDT     H      33     H      33      5   23   40     3    4    7    9   17   23   24   25   27   28   33   35   40   43   46   49   53   57   60   63 
LCS_GDT     Q      34     Q      34     19   23   40     3   10   17   20   22   23   24   25   27   28   33   35   40   43   46   49   53   57   60   63 
LCS_GDT     V      35     V      35     19   23   40     3   13   18   20   22   23   24   25   27   28   33   35   40   43   46   49   53   57   60   63 
LCS_GDT     S      36     S      36     19   23   40     3   11   18   20   22   23   24   25   27   28   33   35   40   43   46   49   53   57   60   63 
LCS_GDT     Y      37     Y      37     19   23   40     3   14   18   20   22   23   24   25   27   28   32   35   40   43   46   49   53   57   60   63 
LCS_GDT     T      38     T      38     19   23   40     3   14   18   20   22   23   24   25   27   28   33   35   40   43   46   49   53   57   60   63 
LCS_GDT     N      39     N      39     19   23   40     5    8   18   20   22   23   24   25   27   28   33   35   40   43   46   49   53   57   60   63 
LCS_GDT     L      40     L      40     19   23   40     5   14   18   20   22   23   24   25   27   28   33   35   40   43   46   49   53   57   60   63 
LCS_GDT     A      41     A      41     19   23   40     8   14   18   20   22   23   24   25   27   31   33   35   40   43   46   49   53   57   60   63 
LCS_GDT     E      42     E      42     19   23   40     5   14   18   20   22   23   24   26   28   31   33   35   40   43   46   49   53   57   60   63 
LCS_GDT     M      43     M      43     19   23   40     6   14   18   20   22   23   24   26   28   31   33   35   40   43   46   49   53   57   60   63 
LCS_GDT     V      44     V      44     19   23   40     8   14   18   20   22   23   24   25   27   28   33   35   40   43   46   49   53   57   60   63 
LCS_GDT     G      45     G      45     19   23   40     5   14   18   20   22   23   24   25   27   28   33   35   40   43   46   49   53   57   60   63 
LCS_GDT     E      46     E      46     19   23   30     8   14   18   20   22   23   24   25   27   28   33   35   40   43   46   49   53   57   60   63 
LCS_GDT     M      47     M      47     19   23   30     8   14   18   20   22   23   24   25   27   28   33   35   40   43   46   49   53   57   60   63 
LCS_GDT     N      48     N      48     19   23   30     8   14   18   20   22   23   24   25   27   28   33   35   40   43   46   49   53   57   60   63 
LCS_GDT     K      49     K      49     19   23   30     8   14   18   20   22   23   24   25   27   28   33   35   40   42   46   49   53   57   60   63 
LCS_GDT     L      50     L      50     19   23   30     8   14   18   20   22   23   24   25   27   28   31   35   40   42   46   49   53   57   60   63 
LCS_GDT     L      51     L      51     19   23   30     4   14   18   20   22   23   24   25   27   28   33   35   40   42   46   49   53   57   60   63 
LCS_GDT     E      52     E      52     19   23   30     6   12   18   20   22   23   24   25   27   28   33   35   40   42   46   49   53   57   60   63 
LCS_GDT     P      53     P      53     14   23   29     3    6   14   20   22   23   24   25   27   28   29   31   40   42   46   48   52   57   60   63 
LCS_GDT     S      54     S      54      4   23   28     3    4   10   15   22   23   24   25   27   28   29   31   39   42   46   49   53   57   60   63 
LCS_GDT     Q      55     Q      55      4   22   28     3    4    9   12   16   20   21   23   27   28   29   30   35   41   46   49   53   57   60   63 
LCS_GDT     V      56     V      56      4    5   28     3    3    4    5    6   13   19   21   22   24   28   30   31   37   41   46   51   57   60   63 
LCS_GDT     H      57     H      57      3    5   28     3    3    5    5    6    9   11   14   17   22   28   30   34   37   41   46   51   54   57   62 
LCS_GDT     L      58     L      58      3    8   28     3    3    5    5    9   10   13   14   17   23   28   30   34   36   41   45   48   54   57   60 
LCS_GDT     K      59     K      59      3    8   28     3    3    5    6    7    8   16   20   21   23   28   30   36   39   41   46   51   54   59   63 
LCS_GDT     F      60     F      60      4    8   28     3    4    9   15   20   22   24   26   28   31   32   34   38   39   42   46   51   54   57   60 
LCS_GDT     E      61     E      61      4    8   28     3    4    7    8    9   10   22   25   28   31   32   34   38   39   42   46   51   54   57   60 
LCS_GDT     L      62     L      62      4    8   28     3    4    7    8    9   10   13   16   19   24   30   32   35   38   42   46   51   54   57   60 
LCS_GDT     H      63     H      63      4    8   28     3    4    7    8    9   12   16   20   23   25   30   32   34   35   41   45   51   53   57   59 
LCS_GDT     D      64     D      64      3    8   28     3    3    5    7    9   11   14   20   22   24   28   32   34   35   37   41   44   48   53   57 
LCS_GDT     K      65     K      65      3    8   28     3    3    3    5    7   11   13   15   17   20   27   30   34   35   37   41   44   45   46   47 
LCS_GDT     L      66     L      66      4    5   24     3    4    4    5    6    8   10   12   15   19   19   23   27   31   36   41   44   45   46   47 
LCS_GDT     N      67     N      67      4    5   24     3    4    4    6    6    7    8   11   12   14   16   17   20   23   24   36   37   38   39   44 
LCS_GDT     E      68     E      68      4    5   24     3    4    4    5    6    6    8   11   15   16   18   22   24   27   31   36   37   38   43   45 
LCS_GDT     Y      69     Y      69      4    6   24     3    4    5    7    8    9   13   14   17   19   21   28   29   31   36   41   44   47   53   54 
LCS_GDT     Y      70     Y      70      4    6   36     3    3    5    6    8   10   13   14   17   19   28   31   35   38   42   43   49   54   57   60 
LCS_GDT     V      71     V      71      4    6   36     3    3    7    8   14   16   23   26   28   31   32   34   38   39   42   46   51   54   57   60 
LCS_GDT     K      72     K      72      4    7   36     3    3    7    8    9   13   18   23   28   31   32   34   38   39   42   46   51   54   57   60 
LCS_GDT     V      73     V      73      4    7   36     3    4    4    6    8   10   12   14   17   23   28   30   37   39   42   43   45   50   54   57 
LCS_GDT     I      74     I      74      4    7   36     3    4    7    8    9   10   13   14   19   30   31   34   38   39   42   43   45   50   54   57 
LCS_GDT     E      75     E      75      4    7   36     4    4    6    7    8   10   13   15   19   30   31   34   38   39   42   43   45   49   52   55 
LCS_GDT     D      76     D      76      4    7   36     4    4    6    7    9   10   13   14   17   20   24   28   32   38   41   43   45   49   52   57 
LCS_GDT     S      77     S      77      4    7   36     4    4    6    7    8   10   11   12   14   18   28   33   36   39   41   43   45   49   52   53 
LCS_GDT     T      78     T      78      5    7   36     4    4    6    9   10   17   22   24   28   30   31   34   38   39   42   43   45   49   52   53 
LCS_GDT     N      79     N      79      5    6   36     3    4    8   14   18   22   24   26   28   31   32   34   38   39   42   43   45   49   52   53 
LCS_GDT     E      80     E      80      5    6   36     3    4    5    8    9   14   20   26   28   31   32   34   38   39   42   43   45   47   49   52 
LCS_GDT     V      81     V      81      5    7   36     3    4    5    6    6   12   14   17   23   26   32   33   34   35   41   43   44   47   49   51 
LCS_GDT     I      82     I      82      5    8   36     3    4    5    8    9   12   15   19   25   31   32   33   38   39   42   43   45   47   49   51 
LCS_GDT     R      83     R      83      4    8   36     3    3    6    8    9   14   21   26   28   31   32   34   38   39   42   43   45   49   52   55 
LCS_GDT     E      84     E      84      4    8   36     3    4    6    6    8   11   14   17   22   29   32   34   38   39   42   43   45   48   52   53 
LCS_GDT     I      85     I      85      4   20   36     3    5    9   14   19   22   24   26   28   31   32   34   38   39   42   43   45   49   52   53 
LCS_GDT     P      86     P      86      4   20   36     3    4   12   16   20   22   24   26   28   31   32   34   38   39   42   43   45   49   52   53 
LCS_GDT     P      87     P      87     14   20   36     4    6   13   17   20   22   24   26   28   31   32   34   38   39   42   43   45   49   52   52 
LCS_GDT     K      88     K      88     14   20   36     4    4    8   15   20   22   24   26   28   31   32   34   38   39   42   43   45   49   52   53 
LCS_GDT     R      89     R      89     16   20   36     7   13   16   17   20   22   24   26   28   31   32   34   38   39   42   43   45   49   52   53 
LCS_GDT     W      90     W      90     16   20   36     8   13   16   17   20   22   24   26   28   31   32   34   38   39   42   43   45   49   52   53 
LCS_GDT     L      91     L      91     16   20   36     8   13   16   17   20   22   24   26   28   31   32   34   38   39   42   43   45   49   52   53 
LCS_GDT     D      92     D      92     16   20   36     8   13   16   17   20   22   24   26   28   31   32   34   38   39   42   43   45   49   52   56 
LCS_GDT     F      93     F      93     16   20   36     8   13   16   17   20   22   24   26   28   31   32   34   38   39   42   43   45   49   54   60 
LCS_GDT     Y      94     Y      94     16   20   36     8   13   16   17   20   22   24   26   28   31   32   34   38   39   42   43   49   54   59   62 
LCS_GDT     A      95     A      95     16   20   36     8   13   18   20   22   23   24   26   28   31   32   34   38   39   42   48   52   57   60   63 
LCS_GDT     A      96     A      96     16   20   36     8   13   16   20   22   23   24   26   28   31   32   34   38   39   42   46   51   57   60   63 
LCS_GDT     M      97     M      97     16   20   36     5   13   16   17   20   22   24   26   28   31   32   34   38   39   42   46   51   57   60   63 
LCS_GDT     T      98     T      98     16   20   36     8   13   16   17   20   22   24   26   28   31   32   34   38   42   46   49   53   57   60   63 
LCS_GDT     E      99     E      99     16   20   36     8   13   16   17   20   22   24   26   28   31   32   35   40   43   46   49   53   57   60   63 
LCS_GDT     F     100     F     100     16   20   36     8   13   16   17   20   22   24   26   28   31   32   34   38   39   42   49   53   57   60   63 
LCS_GDT     L     101     L     101     16   20   36     4   13   16   17   20   22   24   26   28   31   32   34   38   39   42   46   50   57   60   63 
LCS_GDT     G     102     G     102     16   20   36     4   13   16   17   20   22   24   26   28   31   32   34   40   42   45   49   53   57   60   63 
LCS_GDT     L     103     L     103     16   20   36     4   13   16   17   20   22   24   26   28   31   32   34   38   42   45   49   53   57   60   63 
LCS_GDT     F     104     F     104     16   20   36     5   10   16   17   20   22   24   26   28   31   32   34   38   39   42   43   47   49   53   62 
LCS_GDT     V     105     V     105      4   19   36     3    4    4    7   14   16   18   19   21   26   31   33   40   42   45   47   53   57   60   63 
LCS_GDT     D     106     D     106      4    5   30     3    4    9   12   13   14   15   17   22   27   32   35   40   43   46   49   53   57   60   63 
LCS_GDT     E     107     E     107      4    5   25     3    4    4    5    5    8   10   13   18   20   24   27   32   39   42   47   51   56   60   63 
LCS_GDT     K     108     K     108      3    4   24     3    3    4    4    5    8   14   17   19   22   27   32   33   39   42   46   51   54   59   63 
LCS_GDT     K     109     K     109      3    4   24     3    3    3    3    5    5    9   18   21   25   30   32   33   38   41   46   51   54   57   60 
LCS_AVERAGE  LCS_A:  17.67  (   8.48   12.20   32.32 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA      8     14     18     20     22     23     24     26     28     31     33     35     40     43     46     49     53     57     60     63 
GDT PERCENT_CA   7.34  12.84  16.51  18.35  20.18  21.10  22.02  23.85  25.69  28.44  30.28  32.11  36.70  39.45  42.20  44.95  48.62  52.29  55.05  57.80
GDT RMS_LOCAL    0.21   0.67   0.90   1.02   1.28   1.54   1.75   2.47   2.74   3.19   4.24   4.35   4.77   5.00   5.22   5.62   5.86   6.11   6.46   6.62
GDT RMS_ALL_CA  18.48  18.16  17.85  17.65  17.58  17.47  17.36  17.81  17.94  18.10  16.47  14.65  14.51  15.25  15.69  15.25  15.11  15.26  14.80  14.70

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         32.719
LGA    N       2      N       2         31.763
LGA    I       3      I       3         30.724
LGA    E       4      E       4         35.475
LGA    R       5      R       5         34.480
LGA    L       6      L       6         28.191
LGA    T       7      T       7         26.771
LGA    T       8      T       8         24.818
LGA    L       9      L       9         22.777
LGA    Q      10      Q      10         26.939
LGA    P      11      P      11         26.165
LGA    V      12      V      12         23.189
LGA    W      13      W      13         21.322
LGA    D      14      D      14         22.927
LGA    R      15      R      15         18.772
LGA    Y      16      Y      16         19.721
LGA    D      17      D      17         25.838
LGA    T      18      T      18         26.190
LGA    Q      19      Q      19         23.575
LGA    I      20      I      20         26.082
LGA    H      21      H      21         31.968
LGA    N      22      N      22         32.122
LGA    Q      23      Q      23         32.367
LGA    K      24      K      24         32.421
LGA    D      25      D      25         30.990
LGA    N      26      N      26         26.835
LGA    D      27      D      27         22.749
LGA    N      28      N      28         23.178
LGA    E      29      E      29         20.038
LGA    V      30      V      30         19.381
LGA    P      31      P      31         19.014
LGA    V      32      V      32         18.712
LGA    H      33      H      33         19.146
LGA    Q      34      Q      34         20.417
LGA    V      35      V      35         16.499
LGA    S      36      S      36         17.105
LGA    Y      37      Y      37         13.400
LGA    T      38      T      38          8.280
LGA    N      39      N      39          8.544
LGA    L      40      L      40          7.892
LGA    A      41      A      41          5.687
LGA    E      42      E      42          3.929
LGA    M      43      M      43          3.522
LGA    V      44      V      44          7.672
LGA    G      45      G      45          9.866
LGA    E      46      E      46         10.803
LGA    M      47      M      47         10.924
LGA    N      48      N      48         16.038
LGA    K      49      K      49         18.368
LGA    L      50      L      50         18.166
LGA    L      51      L      51         20.987
LGA    E      52      E      52         24.722
LGA    P      53      P      53         26.575
LGA    S      54      S      54         24.650
LGA    Q      55      Q      55         24.416
LGA    V      56      V      56         17.497
LGA    H      57      H      57         14.764
LGA    L      58      L      58         11.752
LGA    K      59      K      59          9.533
LGA    F      60      F      60          3.863
LGA    E      61      E      61          4.570
LGA    L      62      L      62          8.678
LGA    H      63      H      63         13.559
LGA    D      64      D      64         20.225
LGA    K      65      K      65         26.411
LGA    L      66      L      66         28.712
LGA    N      67      N      67         26.062
LGA    E      68      E      68         19.349
LGA    Y      69      Y      69         14.970
LGA    Y      70      Y      70          8.634
LGA    V      71      V      71          3.040
LGA    K      72      K      72          4.647
LGA    V      73      V      73          7.110
LGA    I      74      I      74          7.539
LGA    E      75      E      75          8.021
LGA    D      76      D      76         12.448
LGA    S      77      S      77         10.925
LGA    T      78      T      78          6.246
LGA    N      79      N      79          2.635
LGA    E      80      E      80          4.379
LGA    V      81      V      81          7.621
LGA    I      82      I      82          5.913
LGA    R      83      R      83          3.926
LGA    E      84      E      84          6.101
LGA    I      85      I      85          0.611
LGA    P      86      P      86          1.538
LGA    P      87      P      87          3.207
LGA    K      88      K      88          2.248
LGA    R      89      R      89          2.512
LGA    W      90      W      90          3.515
LGA    L      91      L      91          2.934
LGA    D      92      D      92          1.479
LGA    F      93      F      93          2.047
LGA    Y      94      Y      94          3.253
LGA    A      95      A      95          2.821
LGA    A      96      A      96          1.455
LGA    M      97      M      97          1.443
LGA    T      98      T      98          2.939
LGA    E      99      E      99          2.485
LGA    F     100      F     100          0.634
LGA    L     101      L     101          2.110
LGA    G     102      G     102          2.396
LGA    L     103      L     103          0.655
LGA    F     104      F     104          3.484
LGA    V     105      V     105         10.501
LGA    D     106      D     106         17.077
LGA    E     107      E     107         18.087
LGA    K     108      K     108         21.660
LGA    K     109      K     109         23.485

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  117  109    4.0     26    2.47    25.000    21.746     1.013

LGA_LOCAL      RMSD =  2.466  Number of atoms =   26  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 18.099  Number of atoms =  109 
Std_ALL_ATOMS  RMSD = 11.536  (standard rmsd on all 109 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.672000 * X  +  -0.446229 * Y  +   0.591012 * Z  +   0.508948
  Y_new =  -0.629923 * X  +  -0.075185 * Y  +  -0.773010 * Z  +   1.623948
  Z_new =   0.389375 * X  +  -0.891755 * Y  +  -0.230565 * Z  + -19.351521 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -1.823808    1.317785  [ DEG:  -104.4965     75.5035 ]
  Theta =  -0.399953   -2.741640  [ DEG:   -22.9156   -157.0844 ]
  Phi   =  -2.388503    0.753090  [ DEG:  -136.8511     43.1489 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0350TS168_4                                  
REMARK     2: T0350.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0350TS168_4.T0350.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  117  109   4.0   26   2.47  21.746    11.54
REMARK  ---------------------------------------------------------- 
MOLECULE T0350TS168_4
PFRMAT TS
TARGET T0350
MODEL 4
PARENT N/A
ATOM      1  CA  MET     1       4.664 -22.029 -21.144  1.00 25.00           C
ATOM      2  CA  ASN     2       1.734 -19.826 -20.208  1.00 25.00           C
ATOM      3  CA  ILE     3      -1.937 -18.904 -20.877  1.00 25.00           C
ATOM      4  CA  GLU     4      -5.769 -18.912 -20.980  1.00 25.00           C
ATOM      5  CA  ARG     5      -7.130 -15.934 -22.874  1.00 25.00           C
ATOM      6  CA  LEU     6      -3.913 -13.897 -22.984  1.00 25.00           C
ATOM      7  CA  THR     7      -5.419 -10.566 -21.846  1.00 25.00           C
ATOM      8  CA  THR     8      -7.850  -7.660 -22.117  1.00 25.00           C
ATOM      9  CA  LEU     9      -7.931  -5.656 -25.393  1.00 25.00           C
ATOM     10  CA  GLN    10     -10.689  -4.532 -27.781  1.00 25.00           C
ATOM     11  CA  PRO    11     -11.934  -0.957 -28.124  1.00 25.00           C
ATOM     12  CA  VAL    12     -14.050  -1.372 -25.047  1.00 25.00           C
ATOM     13  CA  TRP    13     -11.133  -1.504 -22.668  1.00 25.00           C
ATOM     14  CA  ASP    14     -13.521  -0.446 -19.868  1.00 25.00           C
ATOM     15  CA  ARG    15     -11.245   2.512 -19.011  1.00 25.00           C
ATOM     16  CA  TYR    16     -11.163   3.550 -22.697  1.00 25.00           C
ATOM     17  CA  ASP    17     -14.985   3.354 -22.862  1.00 25.00           C
ATOM     18  CA  THR    18     -15.256   5.507 -19.707  1.00 25.00           C
ATOM     19  CA  GLN    19     -12.856   8.078 -21.226  1.00 25.00           C
ATOM     20  CA  ILE    20     -14.935   8.154 -24.441  1.00 25.00           C
ATOM     21  CA  HIS    21     -18.129   8.680 -22.394  1.00 25.00           C
ATOM     22  CA  ASN    22     -16.457  11.544 -20.477  1.00 25.00           C
ATOM     23  CA  GLN    23     -19.379  13.535 -21.887  1.00 25.00           C
ATOM     24  CA  LYS    24     -22.940  13.244 -20.575  1.00 25.00           C
ATOM     25  CA  ASP    25     -23.387  12.653 -16.893  1.00 25.00           C
ATOM     26  CA  ASN    26     -23.181  10.510 -13.706  1.00 25.00           C
ATOM     27  CA  ASP    27     -21.995   8.622 -10.592  1.00 25.00           C
ATOM     28  CA  ASN    28     -21.327  12.106  -9.104  1.00 25.00           C
ATOM     29  CA  GLU    29     -17.762  11.944  -7.870  1.00 25.00           C
ATOM     30  CA  VAL    30     -14.212  10.613  -8.588  1.00 25.00           C
ATOM     31  CA  PRO    31     -11.524  13.168  -9.568  1.00 25.00           C
ATOM     32  CA  VAL    32      -9.745  11.843 -12.589  1.00 25.00           C
ATOM     33  CA  HIS    33      -8.313  14.908 -14.419  1.00 25.00           C
ATOM     34  CA  GLN    34      -7.554  16.968 -17.525  1.00 25.00           C
ATOM     35  CA  VAL    35      -5.963  15.883 -20.806  1.00 25.00           C
ATOM     36  CA  SER    36      -6.673  18.970 -22.808  1.00 25.00           C
ATOM     37  CA  TYR    37      -4.929  17.051 -25.566  1.00 25.00           C
ATOM     38  CA  THR    38      -1.273  18.095 -26.029  1.00 25.00           C
ATOM     39  CA  ASN    39      -0.204  15.670 -23.264  1.00 25.00           C
ATOM     40  CA  LEU    40      -2.188  12.852 -24.936  1.00 25.00           C
ATOM     41  CA  ALA    41      -0.524  13.641 -28.294  1.00 25.00           C
ATOM     42  CA  GLU    42       2.925  13.568 -26.632  1.00 25.00           C
ATOM     43  CA  MET    43       2.106  10.189 -25.024  1.00 25.00           C
ATOM     44  CA  VAL    44       0.985   8.818 -28.421  1.00 25.00           C
ATOM     45  CA  GLY    45       4.236  10.058 -30.022  1.00 25.00           C
ATOM     46  CA  GLU    46       6.271   8.383 -27.244  1.00 25.00           C
ATOM     47  CA  MET    47       4.357   5.109 -27.782  1.00 25.00           C
ATOM     48  CA  ASN    48       5.029   5.306 -31.548  1.00 25.00           C
ATOM     49  CA  LYS    49       8.754   5.896 -30.876  1.00 25.00           C
ATOM     50  CA  LEU    50       8.831   2.878 -28.519  1.00 25.00           C
ATOM     51  CA  LEU    51       7.123   0.721 -31.183  1.00 25.00           C
ATOM     52  CA  GLU    52       9.682   1.872 -33.791  1.00 25.00           C
ATOM     53  CA  PRO    53      12.545   1.014 -31.395  1.00 25.00           C
ATOM     54  CA  SER    54      12.538  -2.047 -29.090  1.00 25.00           C
ATOM     55  CA  GLN    55      13.204  -5.730 -28.321  1.00 25.00           C
ATOM     56  CA  VAL    56      12.940  -5.658 -24.469  1.00 25.00           C
ATOM     57  CA  HIS    57      15.380  -4.150 -21.960  1.00 25.00           C
ATOM     58  CA  LEU    58      16.052  -1.582 -24.687  1.00 25.00           C
ATOM     59  CA  LYS    59      13.931   1.397 -25.653  1.00 25.00           C
ATOM     60  CA  PHE    60      13.859   3.687 -22.598  1.00 25.00           C
ATOM     61  CA  GLU    61      14.570   6.788 -20.539  1.00 25.00           C
ATOM     62  CA  LEU    62      11.050   7.786 -19.435  1.00 25.00           C
ATOM     63  CA  HIS    63       9.630  11.344 -19.037  1.00 25.00           C
ATOM     64  CA  ASP    64      10.705  12.526 -15.547  1.00 25.00           C
ATOM     65  CA  LYS    65      10.205  11.265 -11.982  1.00 25.00           C
ATOM     66  CA  LEU    66       6.813  10.169 -13.417  1.00 25.00           C
ATOM     67  CA  ASN    67       8.592   6.940 -14.354  1.00 25.00           C
ATOM     68  CA  GLU    68       7.280   4.533 -17.001  1.00 25.00           C
ATOM     69  CA  TYR    69       4.205   5.258 -19.069  1.00 25.00           C
ATOM     70  CA  TYR    70       6.409   4.847 -22.091  1.00 25.00           C
ATOM     71  CA  VAL    71       9.475   5.624 -24.180  1.00 25.00           C
ATOM     72  CA  LYS    72      12.289   6.504 -26.531  1.00 25.00           C
ATOM     73  CA  VAL    73      15.891   7.436 -25.570  1.00 25.00           C
ATOM     74  CA  ILE    74      18.700   5.341 -27.137  1.00 25.00           C
ATOM     75  CA  GLU    75      19.376   2.972 -24.240  1.00 25.00           C
ATOM     76  CA  ASP    76      22.455   1.710 -26.141  1.00 25.00           C
ATOM     77  CA  SER    77      24.358   2.898 -23.060  1.00 25.00           C
ATOM     78  CA  THR    78      23.214  -0.100 -21.070  1.00 25.00           C
ATOM     79  CA  ASN    79      21.840   2.426 -18.506  1.00 25.00           C
ATOM     80  CA  GLU    80      18.071   2.881 -18.442  1.00 25.00           C
ATOM     81  CA  VAL    81      15.202   4.105 -16.259  1.00 25.00           C
ATOM     82  CA  ILE    82      12.996   1.546 -18.114  1.00 25.00           C
ATOM     83  CA  ARG    83      10.911  -0.446 -20.605  1.00 25.00           C
ATOM     84  CA  GLU    84       7.669  -2.105 -21.643  1.00 25.00           C
ATOM     85  CA  ILE    85       9.040  -1.950 -25.173  1.00 25.00           C
ATOM     86  CA  PRO    86       7.233  -2.729 -28.414  1.00 25.00           C
ATOM     87  CA  PRO    87       3.926  -2.169 -30.163  1.00 25.00           C
ATOM     88  CA  LYS    88       0.343  -1.792 -28.865  1.00 25.00           C
ATOM     89  CA  ARG    89       0.812  -4.850 -26.609  1.00 25.00           C
ATOM     90  CA  TRP    90       4.082  -3.385 -25.260  1.00 25.00           C
ATOM     91  CA  LEU    91       2.327  -0.055 -24.555  1.00 25.00           C
ATOM     92  CA  ASP    92      -0.484  -1.897 -22.719  1.00 25.00           C
ATOM     93  CA  PHE    93       2.096  -3.807 -20.632  1.00 25.00           C
ATOM     94  CA  TYR    94       3.860  -0.521 -19.762  1.00 25.00           C
ATOM     95  CA  ALA    95       0.516   1.028 -18.722  1.00 25.00           C
ATOM     96  CA  ALA    96      -0.238  -2.016 -16.522  1.00 25.00           C
ATOM     97  CA  MET    97       3.218  -1.727 -14.896  1.00 25.00           C
ATOM     98  CA  THR    98       2.621   1.997 -14.231  1.00 25.00           C
ATOM     99  CA  GLU    99      -0.778   1.196 -12.657  1.00 25.00           C
ATOM    100  CA  PHE   100       0.849  -1.470 -10.440  1.00 25.00           C
ATOM    101  CA  LEU   101       3.532   1.038  -9.353  1.00 25.00           C
ATOM    102  CA  GLY   102       0.822   3.613  -8.518  1.00 25.00           C
ATOM    103  CA  LEU   103      -1.071   0.991  -6.465  1.00 25.00           C
ATOM    104  CA  PHE   104       2.146   0.107  -4.582  1.00 25.00           C
ATOM    105  CA  VAL   105       4.270  -2.696  -6.057  1.00 25.00           C
ATOM    106  CA  ASP   106       4.889  -6.332  -6.868  1.00 25.00           C
ATOM    107  CA  GLU   107       2.620  -8.630  -4.768  1.00 25.00           C
ATOM    108  CA  LYS   108       3.578  -7.143  -1.371  1.00 25.00           C
ATOM    109  CA  LYS   109       0.469  -8.713   0.221  1.00 25.00           C
ATOM    110  CA  LEU   110      -0.116 -12.217  -1.103  1.00 25.00           C
ATOM    111  CA  GLU   111      -2.712 -11.532  -3.850  1.00 25.00           C
ATOM    112  CA  HIS   112      -4.024 -15.043  -3.001  1.00 25.00           C
ATOM    113  CA  HIS   113      -7.363 -14.423  -1.360  1.00 25.00           C
ATOM    114  CA  HIS   114      -9.363 -15.732  -4.354  1.00 25.00           C
ATOM    115  CA  HIS   115     -12.254 -14.006  -2.656  1.00 25.00           C
ATOM    116  CA  HIS   116     -13.832 -11.905  -5.382  1.00 25.00           C
ATOM    117  CA  HIS   117     -15.328 -10.520  -8.567  1.00 25.00           C
TER
END
