
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  117 (  117),  selected  109 , name T0350TS168_5
# Molecule2: number of CA atoms  109 ( 1798),  selected  109 , name T0350.pdb
# PARAMETERS: T0350TS168_5.T0350.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    72        34 - 105         4.99    13.74
  LONGEST_CONTINUOUS_SEGMENT:    72        35 - 106         4.99    13.92
  LCS_AVERAGE:     57.12

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    29        75 - 103         2.00    14.39
  LCS_AVERAGE:     16.63

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    18        35 - 52          0.88    16.14
  LCS_AVERAGE:      8.55

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  109
LCS_GDT     M       1     M       1      3    4   23     3    3    3    4    5    7    8    8   10   11   13   14   18   22   23   27   29   31   32   35 
LCS_GDT     N       2     N       2      3    4   24     3    3    3    4    5    7   10   14   15   17   21   23   23   24   29   32   36   40   42   45 
LCS_GDT     I       3     I       3      3    5   24     3    3    4    4    8    9   10   14   16   19   23   23   26   28   31   35   36   39   49   53 
LCS_GDT     E       4     E       4      3    8   24     3    3    4    7    8    9   10   13   16   19   23   23   26   28   30   35   35   39   42   53 
LCS_GDT     R       5     R       5      3    8   24     3    3    4    7    8    9   10   14   17   19   23   23   26   28   32   37   42   47   49   54 
LCS_GDT     L       6     L       6      3    8   24     3    4    4    7    8    9   11   14   20   25   27   28   31   35   40   44   48   53   57   62 
LCS_GDT     T       7     T       7      3    8   47     3    3    5    7   10   15   17   19   23   28   32   39   45   49   52   57   61   67   69   71 
LCS_GDT     T       8     T       8      4    8   47     3    4    4    7   10   15   17   19   23   28   32   40   46   49   52   57   61   67   69   71 
LCS_GDT     L       9     L       9      4    8   47     3    4    5    7   10   15   18   20   25   32   40   45   49   54   58   62   64   69   72   77 
LCS_GDT     Q      10     Q      10      4    8   47     3    4    5    7   10   15   18   20   27   32   40   45   50   56   58   62   64   69   72   79 
LCS_GDT     P      11     P      11      4    8   47     4    4    5    7   10   15   18   20   27   32   40   46   51   56   59   62   64   70   79   83 
LCS_GDT     V      12     V      12      3   12   47     4    4    4    8    9   13   18   20   27   32   40   45   50   56   59   62   64   69   74   83 
LCS_GDT     W      13     W      13     11   12   47     5   10   10   11   11   18   22   27   30   35   40   47   52   56   59   62   71   78   83   86 
LCS_GDT     D      14     D      14     11   12   47     5   10   10   11   11   11   16   18   25   33   38   47   52   56   59   62   70   78   83   86 
LCS_GDT     R      15     R      15     11   12   47     5   10   10   11   11   11   16   18   27   33   40   47   52   56   59   63   72   78   83   86 
LCS_GDT     Y      16     Y      16     11   12   47     5   10   10   11   11   17   21   25   30   35   40   47   52   56   59   63   72   78   83   86 
LCS_GDT     D      17     D      17     11   12   47     5   10   10   11   11   12   16   19   27   33   40   47   52   56   59   62   66   75   83   86 
LCS_GDT     T      18     T      18     11   12   47     5   10   10   11   11   11   16   18   23   25   31   40   52   55   59   62   64   74   83   86 
LCS_GDT     Q      19     Q      19     11   12   47     5   10   10   11   11   11   16   19   27   33   40   47   52   56   59   62   72   78   83   86 
LCS_GDT     I      20     I      20     11   12   47     5   10   10   11   11   17   21   25   30   35   40   47   52   56   59   62   70   78   83   86 
LCS_GDT     H      21     H      21     11   12   47     5   10   10   11   11   11   13   19   22   27   37   45   51   55   59   62   64   69   72   77 
LCS_GDT     N      22     N      22     11   12   47     3   10   10   11   11   11   16   17   19   21   28   33   43   50   58   61   64   69   72   76 
LCS_GDT     Q      23     Q      23     11   12   47     3    4   10   11   11   12   14   19   25   32   40   46   52   56   59   62   64   72   83   85 
LCS_GDT     K      24     K      24      4   12   47     3    3    5    8   10   12   14   19   25   32   40   46   52   56   59   62   67   76   83   86 
LCS_GDT     D      25     D      25      4    7   47     3    3    5    7   10   13   18   20   27   33   40   47   52   56   59   62   72   78   83   86 
LCS_GDT     N      26     N      26      4    7   47     3    3    5    8   10   13   18   20   27   32   40   47   52   56   59   62   72   78   83   86 
LCS_GDT     D      27     D      27      3    7   47     3    3    4    6    9   12   18   20   27   32   40   47   52   56   59   64   73   78   83   86 
LCS_GDT     N      28     N      28      3    7   47     3    3    6    8   10   12   14   18   27   32   40   46   52   56   59   63   72   78   83   86 
LCS_GDT     E      29     E      29      3    7   47     3    3    6    8   10   13   18   22   28   35   40   47   52   56   64   70   73   78   83   86 
LCS_GDT     V      30     V      30      3    8   47     3    3    6    6    8   12   19   25   30   35   40   47   52   56   59   64   73   78   83   86 
LCS_GDT     P      31     P      31      4   24   47     3    4    6    8   10   18   25   27   33   37   41   47   52   57   64   70   73   78   83   86 
LCS_GDT     V      32     V      32      4   24   47     3    4   10   20   22   22   25   27   33   39   42   47   53   60   65   70   73   78   83   86 
LCS_GDT     H      33     H      33      4   24   47     3   11   18   20   22   22   25   27   33   37   41   47   52   56   63   70   73   78   83   86 
LCS_GDT     Q      34     Q      34      4   24   72     3    4    6   12   18   22   23   26   29   35   40   46   52   56   61   67   71   78   83   86 
LCS_GDT     V      35     V      35     18   24   72     3   10   18   20   22   22   25   27   33   39   42   47   52   56   64   70   73   78   83   86 
LCS_GDT     S      36     S      36     18   24   72     3   13   18   20   22   22   25   27   33   39   42   47   54   58   65   70   73   78   83   86 
LCS_GDT     Y      37     Y      37     18   24   72     3   15   18   20   22   22   25   27   34   41   47   53   56   63   66   70   73   77   83   86 
LCS_GDT     T      38     T      38     18   24   72     6   15   18   20   22   29   38   43   48   52   55   59   62   63   66   70   73   78   83   86 
LCS_GDT     N      39     N      39     18   24   72     5   15   18   20   22   22   25   32   41   49   52   59   62   63   66   70   73   78   83   86 
LCS_GDT     L      40     L      40     18   24   72     5   15   18   20   22   22   25   27   35   41   50   55   62   63   66   70   73   78   83   86 
LCS_GDT     A      41     A      41     18   24   72     7   15   18   20   22   22   33   43   48   52   55   59   62   63   66   70   73   78   83   86 
LCS_GDT     E      42     E      42     18   24   72     6   15   18   20   27   33   40   45   48   52   55   59   62   63   66   70   73   78   83   86 
LCS_GDT     M      43     M      43     18   24   72     6   15   18   20   22   31   38   45   48   52   55   59   62   63   66   70   73   78   83   86 
LCS_GDT     V      44     V      44     18   24   72     7   15   18   20   22   26   38   45   48   52   55   59   62   63   66   70   73   78   83   86 
LCS_GDT     G      45     G      45     18   24   72     6   15   18   20   22   30   38   45   48   52   55   59   62   63   66   70   73   78   83   86 
LCS_GDT     E      46     E      46     18   24   72     7   15   18   20   25   30   39   45   48   52   55   59   62   63   66   70   73   78   83   86 
LCS_GDT     M      47     M      47     18   24   72     7   15   18   20   27   33   40   45   48   52   55   59   62   63   66   70   73   78   83   86 
LCS_GDT     N      48     N      48     18   24   72     7   15   18   20   22   22   26   33   47   52   55   59   62   63   66   70   73   78   83   86 
LCS_GDT     K      49     K      49     18   24   72     7   15   18   20   22   22   25   27   41   50   55   58   61   63   66   70   73   78   83   86 
LCS_GDT     L      50     L      50     18   24   72     7   15   18   20   22   22   27   41   47   52   55   59   62   63   66   70   73   78   83   86 
LCS_GDT     L      51     L      51     18   24   72     4   15   18   20   22   22   26   33   47   52   55   59   62   63   66   70   73   78   83   86 
LCS_GDT     E      52     E      52     18   24   72     6   12   18   20   22   22   25   27   34   39   47   54   58   62   66   70   73   78   83   86 
LCS_GDT     P      53     P      53     14   24   72     4    6   11   19   22   22   24   27   33   37   43   52   58   61   66   70   73   78   83   86 
LCS_GDT     S      54     S      54     14   24   72     4    6   11   19   22   22   27   33   46   52   55   59   62   63   66   70   73   78   83   86 
LCS_GDT     Q      55     Q      55      5   23   72     3    4    7   12   25   33   40   45   48   52   55   59   62   63   66   70   73   78   83   86 
LCS_GDT     V      56     V      56      5   20   72     3    4    6   12   23   33   40   45   48   52   55   59   62   63   66   70   73   78   83   86 
LCS_GDT     H      57     H      57      5   14   72     3    5    6    9   15   17   22   31   38   48   53   59   62   63   66   70   73   78   83   86 
LCS_GDT     L      58     L      58      5   14   72     4    7   10   14   15   20   28   40   46   52   55   59   62   63   66   70   73   78   83   86 
LCS_GDT     K      59     K      59      5   12   72     3    5    6   13   15   18   24   33   44   51   55   59   62   63   66   70   73   78   83   86 
LCS_GDT     F      60     F      60      5   10   72     4    7   10   14   20   33   40   45   48   52   55   59   62   63   66   70   73   78   83   86 
LCS_GDT     E      61     E      61      5   10   72     4    6   10   16   27   33   40   45   48   52   55   59   62   63   66   70   73   78   83   86 
LCS_GDT     L      62     L      62      5   10   72     4    7   10   14   26   33   40   45   48   52   55   59   62   63   66   70   73   78   83   86 
LCS_GDT     H      63     H      63      5   10   72     4    6   10   18   27   33   40   45   48   52   55   59   62   63   66   70   73   78   83   86 
LCS_GDT     D      64     D      64      5   10   72     4    7   12   21   27   33   40   45   48   52   55   59   62   63   66   70   73   78   83   86 
LCS_GDT     K      65     K      65      5   10   72     4    5   10   14   19   32   38   43   48   52   55   59   62   63   66   70   73   78   83   86 
LCS_GDT     L      66     L      66      4    7   72     4    4    4    6    7    9   10   21   29   34   47   55   60   63   66   70   73   78   83   86 
LCS_GDT     N      67     N      67      4    7   72     4    4    4    6    8   12   14   26   40   47   52   55   61   63   65   68   69   69   73   76 
LCS_GDT     E      68     E      68      3    7   72     3   14   14   18   22   26   27   32   42   50   52   55   61   63   65   68   69   69   71   76 
LCS_GDT     Y      69     Y      69      5    8   72     2    4   17   19   25   32   40   45   48   52   55   59   62   63   66   70   73   78   83   86 
LCS_GDT     Y      70     Y      70      5    8   72     3   11   18   22   25   32   40   45   48   52   55   59   62   63   66   70   73   78   83   86 
LCS_GDT     V      71     V      71      5    8   72     3    4    5    7   21   26   32   40   46   51   55   59   62   63   66   70   73   78   83   86 
LCS_GDT     K      72     K      72      5    8   72     3    4    5    7   17   28   34   42   47   51   55   59   62   63   66   70   73   78   83   86 
LCS_GDT     V      73     V      73      5    8   72     3    4    5    7    9   12   26   34   41   50   53   58   62   63   66   70   73   77   83   86 
LCS_GDT     I      74     I      74      5    8   72     3    7   12   15   22   28   35   42   48   51   55   59   62   63   66   70   73   78   83   86 
LCS_GDT     E      75     E      75      5   29   72     4    9   15   21   27   33   40   45   48   52   55   59   62   63   66   70   73   78   83   86 
LCS_GDT     D      76     D      76      5   29   72     4   11   18   22   25   31   40   45   48   52   55   59   62   63   66   70   73   78   83   86 
LCS_GDT     S      77     S      77      5   29   72     4    5   10   17   26   33   40   45   48   52   55   59   62   63   66   70   73   78   83   86 
LCS_GDT     T      78     T      78      5   29   72     4    4   15   21   27   32   38   45   48   52   55   59   62   63   66   70   73   76   79   84 
LCS_GDT     N      79     N      79      3   29   72     3    7   15   21   27   33   40   45   48   52   55   59   62   63   66   70   73   78   83   86 
LCS_GDT     E      80     E      80      3   29   72     1    6   15   21   27   33   40   45   48   52   55   59   62   63   66   70   73   78   83   86 
LCS_GDT     V      81     V      81      3   29   72     1    3   18   22   25   32   40   45   48   52   55   59   62   63   66   70   73   77   83   86 
LCS_GDT     I      82     I      82      3   29   72     2    4   15   21   27   33   40   45   48   52   55   59   62   63   66   70   73   78   83   86 
LCS_GDT     R      83     R      83      4   29   72     1    5   13   21   27   33   40   45   48   52   55   59   62   63   66   70   73   78   83   86 
LCS_GDT     E      84     E      84      5   29   72     3    4   17   21   25   33   40   45   48   52   55   59   62   63   66   70   73   78   83   86 
LCS_GDT     I      85     I      85      7   29   72     4   11   18   22   27   33   40   45   48   52   55   59   62   63   66   70   73   78   83   86 
LCS_GDT     P      86     P      86     15   29   72     6   11   18   22   27   33   40   45   48   52   55   59   62   63   66   70   73   78   83   86 
LCS_GDT     P      87     P      87     15   29   72     6   11   18   22   27   33   40   45   48   52   55   59   62   63   66   70   73   78   83   86 
LCS_GDT     K      88     K      88     15   29   72     4    5   11   20   27   33   40   45   48   52   55   59   62   63   66   70   73   78   83   86 
LCS_GDT     R      89     R      89     16   29   72     7   14   18   22   27   33   40   45   48   52   55   59   62   63   66   70   73   78   83   86 
LCS_GDT     W      90     W      90     16   29   72     9   14   18   22   25   32   40   45   48   52   55   59   62   63   66   70   73   78   83   86 
LCS_GDT     L      91     L      91     16   29   72     9   14   17   22   25   32   40   45   48   52   55   59   62   63   66   70   73   78   83   86 
LCS_GDT     D      92     D      92     16   29   72     9   14   18   22   27   33   40   45   48   52   55   59   62   63   66   70   73   78   83   86 
LCS_GDT     F      93     F      93     16   29   72     9   14   18   22   27   33   40   45   48   52   55   59   62   63   66   70   73   78   83   86 
LCS_GDT     Y      94     Y      94     16   29   72     9   14   18   22   27   33   40   45   48   52   55   59   62   63   66   70   73   78   83   86 
LCS_GDT     A      95     A      95     16   29   72     9   14   18   22   27   33   40   45   48   52   55   59   62   63   66   70   73   78   83   86 
LCS_GDT     A      96     A      96     16   29   72     9   14   18   22   27   33   40   45   48   52   55   59   62   63   66   70   73   78   83   86 
LCS_GDT     M      97     M      97     16   29   72     6   14   18   22   27   33   40   45   48   52   55   59   62   63   66   70   73   78   83   86 
LCS_GDT     T      98     T      98     16   29   72     8   14   18   22   27   33   40   45   48   52   55   59   62   63   66   70   73   78   83   86 
LCS_GDT     E      99     E      99     16   29   72     9   14   18   22   27   33   40   45   48   52   55   59   62   63   66   70   73   78   83   86 
LCS_GDT     F     100     F     100     16   29   72     9   14   18   22   27   33   40   45   48   52   55   59   62   63   66   70   73   78   83   86 
LCS_GDT     L     101     L     101     16   29   72     4   14   18   22   27   33   40   45   48   52   55   59   62   63   66   70   73   78   83   86 
LCS_GDT     G     102     G     102     16   29   72     4   13   18   22   27   33   40   45   48   52   55   59   62   63   66   70   73   78   83   86 
LCS_GDT     L     103     L     103     16   29   72     4   13   18   22   27   33   40   45   48   52   55   59   62   63   66   70   73   78   83   86 
LCS_GDT     F     104     F     104     16   27   72     4   10   16   22   25   31   40   45   48   52   55   59   62   63   66   70   73   78   83   86 
LCS_GDT     V     105     V     105      4   22   72     3    4    6   12   17   22   25   33   41   50   54   59   62   63   65   68   71   77   81   85 
LCS_GDT     D     106     D     106      4    6   72     3    4    4    4    5    8   11   20   23   29   33   37   48   56   64   65   68   69   72   77 
LCS_GDT     E     107     E     107      4    6   70     3    4    4    7    9   12   14   15   18   27   31   34   37   39   45   49   52   61   69   71 
LCS_GDT     K     108     K     108      3    6   24     3    3    3    4    7   12   14   15   18   20   24   31   32   36   37   40   42   46   49   54 
LCS_GDT     K     109     K     109      3    4   24     3    3    4    6    9   11   13   14   17   19   22   25   29   32   33   36   38   43   49   53 
LCS_AVERAGE  LCS_A:  27.43  (   8.55   16.63   57.12 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA      9     15     18     22     27     33     40     45     48     52     55     59     62     63     66     70     73     78     83     86 
GDT PERCENT_CA   8.26  13.76  16.51  20.18  24.77  30.28  36.70  41.28  44.04  47.71  50.46  54.13  56.88  57.80  60.55  64.22  66.97  71.56  76.15  78.90
GDT RMS_LOCAL    0.27   0.69   0.88   1.22   1.68   2.14   2.42   2.63   2.80   3.12   3.23   3.60   3.84   3.90   4.21   4.86   5.36   6.37   6.64   6.91
GDT RMS_ALL_CA  14.37  16.40  16.14  14.33  14.67  14.17  14.26  14.42  14.37  14.32  14.41  14.17  14.08  14.55  14.08  13.55  13.24  12.17  12.17  12.04

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         36.244
LGA    N       2      N       2         34.071
LGA    I       3      I       3         32.786
LGA    E       4      E       4         37.767
LGA    R       5      R       5         37.049
LGA    L       6      L       6         30.008
LGA    T       7      T       7         25.975
LGA    T       8      T       8         25.042
LGA    L       9      L       9         19.797
LGA    Q      10      Q      10         22.178
LGA    P      11      P      11         18.259
LGA    V      12      V      12         18.326
LGA    W      13      W      13         16.895
LGA    D      14      D      14         19.255
LGA    R      15      R      15         16.566
LGA    Y      16      Y      16         16.107
LGA    D      17      D      17         21.403
LGA    T      18      T      18         22.722
LGA    Q      19      Q      19         19.492
LGA    I      20      I      20         20.608
LGA    H      21      H      21         26.510
LGA    N      22      N      22         26.815
LGA    Q      23      Q      23         24.681
LGA    K      24      K      24         24.689
LGA    D      25      D      25         23.895
LGA    N      26      N      26         23.276
LGA    D      27      D      27         19.030
LGA    N      28      N      28         19.630
LGA    E      29      E      29         15.526
LGA    V      30      V      30         17.654
LGA    P      31      P      31         13.793
LGA    V      32      V      32         14.015
LGA    H      33      H      33         15.057
LGA    Q      34      Q      34         15.551
LGA    V      35      V      35         12.713
LGA    S      36      S      36         11.381
LGA    Y      37      Y      37          9.258
LGA    T      38      T      38          4.782
LGA    N      39      N      39          7.202
LGA    L      40      L      40          7.688
LGA    A      41      A      41          4.473
LGA    E      42      E      42          2.650
LGA    M      43      M      43          3.833
LGA    V      44      V      44          3.823
LGA    G      45      G      45          3.994
LGA    E      46      E      46          3.790
LGA    M      47      M      47          2.074
LGA    N      48      N      48          5.461
LGA    K      49      K      49          6.905
LGA    L      50      L      50          5.133
LGA    L      51      L      51          5.756
LGA    E      52      E      52          8.607
LGA    P      53      P      53          8.789
LGA    S      54      S      54          6.015
LGA    Q      55      Q      55          3.441
LGA    V      56      V      56          3.870
LGA    H      57      H      57          8.400
LGA    L      58      L      58          5.532
LGA    K      59      K      59          6.661
LGA    F      60      F      60          3.424
LGA    E      61      E      61          2.244
LGA    L      62      L      62          2.865
LGA    H      63      H      63          2.966
LGA    D      64      D      64          2.294
LGA    K      65      K      65          4.877
LGA    L      66      L      66          7.449
LGA    N      67      N      67          7.252
LGA    E      68      E      68          7.170
LGA    Y      69      Y      69          3.364
LGA    Y      70      Y      70          3.800
LGA    V      71      V      71          5.153
LGA    K      72      K      72          4.808
LGA    V      73      V      73          5.810
LGA    I      74      I      74          4.842
LGA    E      75      E      75          0.495
LGA    D      76      D      76          3.801
LGA    S      77      S      77          2.945
LGA    T      78      T      78          2.822
LGA    N      79      N      79          0.997
LGA    E      80      E      80          1.808
LGA    V      81      V      81          3.802
LGA    I      82      I      82          1.977
LGA    R      83      R      83          1.220
LGA    E      84      E      84          2.868
LGA    I      85      I      85          1.695
LGA    P      86      P      86          1.439
LGA    P      87      P      87          1.488
LGA    K      88      K      88          2.724
LGA    R      89      R      89          1.631
LGA    W      90      W      90          2.820
LGA    L      91      L      91          3.518
LGA    D      92      D      92          2.021
LGA    F      93      F      93          1.074
LGA    Y      94      Y      94          2.474
LGA    A      95      A      95          2.249
LGA    A      96      A      96          1.502
LGA    M      97      M      97          0.985
LGA    T      98      T      98          1.393
LGA    E      99      E      99          1.341
LGA    F     100      F     100          1.312
LGA    L     101      L     101          1.892
LGA    G     102      G     102          1.914
LGA    L     103      L     103          2.510
LGA    F     104      F     104          3.525
LGA    V     105      V     105          8.395
LGA    D     106      D     106         14.946
LGA    E     107      E     107         18.521
LGA    K     108      K     108         25.293
LGA    K     109      K     109         27.889

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  117  109    4.0     45    2.63    34.862    31.319     1.648

LGA_LOCAL      RMSD =  2.631  Number of atoms =   45  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 14.413  Number of atoms =  109 
Std_ALL_ATOMS  RMSD = 10.492  (standard rmsd on all 109 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.490203 * X  +   0.653552 * Y  +   0.576689 * Z  +   1.719796
  Y_new =  -0.076057 * X  +   0.691188 * Y  +  -0.718661 * Z  +   0.470986
  Z_new =  -0.868283 * X  +   0.308429 * Y  +   0.388530 * Z  + -20.202063 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   0.670971   -2.470622  [ DEG:    38.4438   -141.5562 ]
  Theta =   1.051731    2.089861  [ DEG:    60.2598    119.7402 ]
  Phi   =  -0.153927    2.987666  [ DEG:    -8.8194    171.1806 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0350TS168_5                                  
REMARK     2: T0350.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0350TS168_5.T0350.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  117  109   4.0   45   2.63  31.319    10.49
REMARK  ---------------------------------------------------------- 
MOLECULE T0350TS168_5
PFRMAT TS
TARGET T0350
MODEL 5
PARENT N/A
ATOM      1  CA  MET     1       9.893 -22.669 -24.380  1.00 25.00           C
ATOM      2  CA  ASN     2       8.953 -18.958 -24.300  1.00 25.00           C
ATOM      3  CA  ILE     3       5.408 -19.050 -25.673  1.00 25.00           C
ATOM      4  CA  GLU     4       2.069 -20.269 -27.029  1.00 25.00           C
ATOM      5  CA  ARG     5       0.783 -17.722 -29.456  1.00 25.00           C
ATOM      6  CA  LEU     6       2.352 -14.537 -28.140  1.00 25.00           C
ATOM      7  CA  THR     7       1.546 -11.545 -25.888  1.00 25.00           C
ATOM      8  CA  THR     8      -0.707  -9.806 -28.440  1.00 25.00           C
ATOM      9  CA  LEU     9      -2.834  -8.678 -25.421  1.00 25.00           C
ATOM     10  CA  GLN    10      -6.631  -8.891 -25.150  1.00 25.00           C
ATOM     11  CA  PRO    11      -7.933  -9.406 -21.611  1.00 25.00           C
ATOM     12  CA  VAL    12     -10.404  -6.589 -22.124  1.00 25.00           C
ATOM     13  CA  TRP    13      -7.992  -4.518 -20.009  1.00 25.00           C
ATOM     14  CA  ASP    14     -10.562  -2.158 -18.430  1.00 25.00           C
ATOM     15  CA  ARG    15      -9.182   0.763 -20.487  1.00 25.00           C
ATOM     16  CA  TYR    16      -9.409  -1.344 -23.677  1.00 25.00           C
ATOM     17  CA  ASP    17     -13.031  -2.266 -22.839  1.00 25.00           C
ATOM     18  CA  THR    18     -13.865   1.428 -22.266  1.00 25.00           C
ATOM     19  CA  GLN    19     -12.274   2.334 -25.630  1.00 25.00           C
ATOM     20  CA  ILE    20     -14.312  -0.408 -27.360  1.00 25.00           C
ATOM     21  CA  HIS    21     -17.515   0.905 -25.722  1.00 25.00           C
ATOM     22  CA  ASN    22     -16.684   4.458 -26.887  1.00 25.00           C
ATOM     23  CA  GLN    23     -17.376   4.687 -30.605  1.00 25.00           C
ATOM     24  CA  LYS    24     -21.165   4.208 -30.552  1.00 25.00           C
ATOM     25  CA  ASP    25     -24.463   4.758 -28.640  1.00 25.00           C
ATOM     26  CA  ASN    26     -25.698   6.691 -25.561  1.00 25.00           C
ATOM     27  CA  ASP    27     -24.737   6.426 -21.880  1.00 25.00           C
ATOM     28  CA  ASN    28     -24.047   8.938 -19.056  1.00 25.00           C
ATOM     29  CA  GLU    29     -20.725   9.805 -17.418  1.00 25.00           C
ATOM     30  CA  VAL    30     -17.609  11.146 -15.682  1.00 25.00           C
ATOM     31  CA  PRO    31     -13.990  10.293 -16.337  1.00 25.00           C
ATOM     32  CA  VAL    32     -11.630  10.865 -19.213  1.00 25.00           C
ATOM     33  CA  HIS    33     -11.362  14.267 -20.861  1.00 25.00           C
ATOM     34  CA  GLN    34      -8.966  15.305 -23.582  1.00 25.00           C
ATOM     35  CA  VAL    35      -8.435  13.442 -26.902  1.00 25.00           C
ATOM     36  CA  SER    36      -7.579  15.180 -30.215  1.00 25.00           C
ATOM     37  CA  TYR    37      -5.326  12.142 -30.623  1.00 25.00           C
ATOM     38  CA  THR    38      -2.535  14.700 -30.049  1.00 25.00           C
ATOM     39  CA  ASN    39      -3.481  14.939 -26.346  1.00 25.00           C
ATOM     40  CA  LEU    40      -3.416  11.120 -26.058  1.00 25.00           C
ATOM     41  CA  ALA    41       0.037  11.030 -27.712  1.00 25.00           C
ATOM     42  CA  GLU    42       1.301  13.702 -25.277  1.00 25.00           C
ATOM     43  CA  MET    43      -0.063  11.687 -22.320  1.00 25.00           C
ATOM     44  CA  VAL    44       1.676   8.537 -23.633  1.00 25.00           C
ATOM     45  CA  GLY    45       4.964  10.468 -23.986  1.00 25.00           C
ATOM     46  CA  GLU    46       4.613  11.770 -20.401  1.00 25.00           C
ATOM     47  CA  MET    47       3.975   8.209 -19.145  1.00 25.00           C
ATOM     48  CA  ASN    48       7.076   6.967 -21.017  1.00 25.00           C
ATOM     49  CA  LYS    49       9.165   9.782 -19.475  1.00 25.00           C
ATOM     50  CA  LEU    50       7.867   8.868 -15.989  1.00 25.00           C
ATOM     51  CA  LEU    51       8.757   5.193 -16.593  1.00 25.00           C
ATOM     52  CA  GLU    52      12.275   6.205 -17.720  1.00 25.00           C
ATOM     53  CA  PRO    53      12.691   8.351 -14.575  1.00 25.00           C
ATOM     54  CA  SER    54      11.585   5.663 -12.079  1.00 25.00           C
ATOM     55  CA  GLN    55      14.563   4.627  -9.940  1.00 25.00           C
ATOM     56  CA  VAL    56      14.523   1.463 -12.001  1.00 25.00           C
ATOM     57  CA  HIS    57      15.103  -1.058 -14.858  1.00 25.00           C
ATOM     58  CA  LEU    58      11.788   0.256 -16.163  1.00 25.00           C
ATOM     59  CA  LYS    59      12.856   1.318 -19.660  1.00 25.00           C
ATOM     60  CA  PHE    60      10.777   3.662 -21.904  1.00 25.00           C
ATOM     61  CA  GLU    61      11.450   6.254 -24.615  1.00 25.00           C
ATOM     62  CA  LEU    62       8.841   6.370 -27.358  1.00 25.00           C
ATOM     63  CA  HIS    63      10.602   7.268 -30.590  1.00 25.00           C
ATOM     64  CA  ASP    64       9.885   6.306 -34.187  1.00 25.00           C
ATOM     65  CA  LYS    65       8.493   3.458 -36.248  1.00 25.00           C
ATOM     66  CA  LEU    66       7.898   0.035 -34.677  1.00 25.00           C
ATOM     67  CA  ASN    67      11.339  -1.407 -34.093  1.00 25.00           C
ATOM     68  CA  GLU    68      14.051   0.527 -32.158  1.00 25.00           C
ATOM     69  CA  TYR    69      10.814   2.290 -31.274  1.00 25.00           C
ATOM     70  CA  TYR    70      12.419   2.354 -27.784  1.00 25.00           C
ATOM     71  CA  VAL    71      14.810   2.511 -24.777  1.00 25.00           C
ATOM     72  CA  LYS    72      16.287   5.681 -23.364  1.00 25.00           C
ATOM     73  CA  VAL    73      16.992   6.947 -19.817  1.00 25.00           C
ATOM     74  CA  ILE    74      17.179   6.621 -16.065  1.00 25.00           C
ATOM     75  CA  GLU    75      17.983   2.924 -15.910  1.00 25.00           C
ATOM     76  CA  ASP    76      19.371   3.506 -12.399  1.00 25.00           C
ATOM     77  CA  SER    77      22.570   1.866 -13.738  1.00 25.00           C
ATOM     78  CA  THR    78      23.226   5.358 -15.166  1.00 25.00           C
ATOM     79  CA  ASN    79      22.983   5.683 -18.951  1.00 25.00           C
ATOM     80  CA  GLU    80      20.728   3.352 -20.970  1.00 25.00           C
ATOM     81  CA  VAL    81      20.703   0.021 -19.017  1.00 25.00           C
ATOM     82  CA  ILE    82      17.428  -0.480 -20.919  1.00 25.00           C
ATOM     83  CA  ARG    83      14.659  -2.420 -22.702  1.00 25.00           C
ATOM     84  CA  GLU    84      11.670  -4.328 -24.078  1.00 25.00           C
ATOM     85  CA  ILE    85      10.091  -0.946 -24.811  1.00 25.00           C
ATOM     86  CA  PRO    86       8.191  -1.431 -28.036  1.00 25.00           C
ATOM     87  CA  PRO    87       5.557   1.148 -28.770  1.00 25.00           C
ATOM     88  CA  LYS    88       2.182  -0.502 -28.023  1.00 25.00           C
ATOM     89  CA  ARG    89       3.892  -2.991 -25.668  1.00 25.00           C
ATOM     90  CA  TRP    90       5.672  -0.111 -23.878  1.00 25.00           C
ATOM     91  CA  LEU    91       2.343   1.743 -23.499  1.00 25.00           C
ATOM     92  CA  ASP    92       0.719  -1.415 -22.065  1.00 25.00           C
ATOM     93  CA  PHE    93       3.611  -1.807 -19.586  1.00 25.00           C
ATOM     94  CA  TYR    94       3.230   1.854 -18.525  1.00 25.00           C
ATOM     95  CA  ALA    95      -0.531   1.340 -18.016  1.00 25.00           C
ATOM     96  CA  ALA    96       0.156  -1.776 -15.898  1.00 25.00           C
ATOM     97  CA  MET    97       2.678   0.186 -13.786  1.00 25.00           C
ATOM     98  CA  THR    98       0.114   2.986 -13.282  1.00 25.00           C
ATOM     99  CA  GLU    99      -2.518   0.418 -12.213  1.00 25.00           C
ATOM    100  CA  PHE   100      -0.041  -1.125  -9.733  1.00 25.00           C
ATOM    101  CA  LEU   101       0.730   2.345  -8.307  1.00 25.00           C
ATOM    102  CA  GLY   102      -3.016   3.049  -7.927  1.00 25.00           C
ATOM    103  CA  LEU   103      -3.486  -0.300  -6.129  1.00 25.00           C
ATOM    104  CA  PHE   104      -0.579   0.525  -3.778  1.00 25.00           C
ATOM    105  CA  VAL   105       2.650  -1.057  -5.160  1.00 25.00           C
ATOM    106  CA  ASP   106       3.993  -4.561  -5.426  1.00 25.00           C
ATOM    107  CA  GLU   107       5.064  -7.279  -2.996  1.00 25.00           C
ATOM    108  CA  LYS   108       4.697 -10.999  -2.164  1.00 25.00           C
ATOM    109  CA  LYS   109       8.249 -11.659  -3.436  1.00 25.00           C
ATOM    110  CA  LEU   110       6.454 -14.230  -5.614  1.00 25.00           C
ATOM    111  CA  GLU   111       2.806 -13.648  -6.177  1.00 25.00           C
ATOM    112  CA  HIS   112       2.092 -17.037  -7.687  1.00 25.00           C
ATOM    113  CA  HIS   113       0.314 -19.666  -5.630  1.00 25.00           C
ATOM    114  CA  HIS   114      -3.278 -18.387  -6.040  1.00 25.00           C
ATOM    115  CA  HIS   115      -6.111 -20.901  -6.235  1.00 25.00           C
ATOM    116  CA  HIS   116      -8.813 -18.668  -7.712  1.00 25.00           C
ATOM    117  CA  HIS   117      -9.049 -17.486 -11.371  1.00 25.00           C
TER
END
